RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3618
         (136 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 5   EVRAEDAKNR--IKNGEEARLEDVNTDDENDEDSEEDILKRDFSSATLDD---------- 52
           E      + +  +   E+A +++ +  D       +D+ K   S   +D           
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDV------QDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 53  ---HFDKTVLPKVMQVKNF-GRSGRTKYSHLVDQDTTQFDSPWLSETSQNHKFHLNQAAG 108
               F   +  +   V+ F     R  Y  L+    T+   P  S  ++ +    ++   
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYN 121

Query: 109 MKQVFVKPSLSKRKP 123
             QVF K ++S+ +P
Sbjct: 122 DNQVFAKYNVSRLQP 136


>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
          homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
          Length = 137

 Score = 27.6 bits (62), Expect = 0.85
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 5  EVRAEDAKNRIKNGEEARLEDVNTDDENDEDSEEDI 40
           +  +DA   ++   +  L DV   DE     + D+
Sbjct: 24 MLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDV 59


>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact;
          peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB:
          3ui5_A 1fjd_A 1eq3_A
          Length = 101

 Score = 24.9 bits (55), Expect = 5.3
 Identities = 4/19 (21%), Positives = 9/19 (47%)

Query: 2  VEDEVRAEDAKNRIKNGEE 20
           E   +  +A  ++K+G  
Sbjct: 15 CEKHGKIMEAMEKLKSGMR 33


>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
           chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
           cerevisiae}
          Length = 800

 Score = 25.5 bits (56), Expect = 7.2
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 3   EDEVRAEDAKNRIKNGEEARLEDVNTDDENDEDSEEDILKR 43
           ++E  A +    +K G        +   + ++ + +D+L  
Sbjct: 718 KNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNH 758


>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43,
           alpha-L- arabinofuranosidase; HET: B3P; 1.30A
           {Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A*
          Length = 538

 Score = 25.3 bits (55), Expect = 9.7
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 4   DEVRAEDAKNRIKNGEEARLEDVNTDDENDEDSEEDILKRDFSSATLDDHF 54
            ++  +D    +  G++  LE    D    E +     + DF   TL+ +F
Sbjct: 295 QKIEWQDGWPVVVGGQQGSLEVEAPDLPQQEWAPTYEERDDFDKDTLNINF 345


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,870,065
Number of extensions: 98364
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 15
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (23.8 bits)