RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3618
         (136 letters)



>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 101

 Score = 25.7 bits (55), Expect = 1.0
 Identities = 7/76 (9%), Positives = 18/76 (23%), Gaps = 5/76 (6%)

Query: 8  AEDAKNRIKNGEEARLEDVNTDDENDEDS-----EEDILKRDFSSATLDDHFDKTVLPKV 62
            D +  +    E  L DV  +D   +          + + +          D  +    
Sbjct: 6  FHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTPITVYD 65

Query: 63 MQVKNFGRSGRTKYSH 78
                  + +  +  
Sbjct: 66 DGEGLAPVAAQRLHDL 81


>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
          dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
          844]}
          Length = 137

 Score = 25.6 bits (55), Expect = 1.5
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 5  EVRAEDAKNRIKNGEEARLEDVNTDDE 31
           +  +DA   ++   +  L DV   DE
Sbjct: 24 MLSPKDAYKLLQENPDITLIDVRDPDE 50


>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
          [TaxId: 9606]}
          Length = 96

 Score = 25.0 bits (54), Expect = 2.1
 Identities = 6/60 (10%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 1  MVEDEVRAEDAKNRIKNGEE-ARLEDVNTDDENDEDSEEDILKRDFSSATLDDHFDKTVL 59
          + E   +  +A  ++K+G     +    ++D+  +  +        +  ++   F +   
Sbjct: 9  LCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLG----WMTRGSMVGPFQEAAF 64


>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
          [TaxId: 562]}
          Length = 92

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 1  MVEDEVRAEDAKNRIKNGEEARLEDVNTDDENDEDSEEDILKRDFSSATLDDHFDKTVL 59
          +V++E  A D   +IKNG +     +          +      +F    +   FDK V 
Sbjct: 10 LVKEEKLALDLLEQIKNGAD--FGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVF 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,841
Number of extensions: 18409
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 7
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.0 bits)