BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3619
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 96 IDDCA--SEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL 153
+D+C+ + PC++ G C++ L F CQC G+ G +CE D++EC+S+PC + T CLD
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT--CLDQ 62
Query: 154 DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
+FQC C GY GV CE N D+C S+PCL+ G C D + +F C+CP G+TG C+ D+
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
G C + +G F C C G+TG C+ +++C S PCQN +C+D + F C C PG+ G+
Sbjct: 19 GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH 78
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNI 174
CE + DEC S PC G +CLD N+FQCEC G+TG +C+ ++
Sbjct: 79 CEVNTDECASSPCLHNG--RCLDKINEFQCECPTGFTGHLCQVDL 121
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 133 DIDECL--SDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRD 190
D+DEC ++PC G KC++ F+C+C GYTG CE ++++C SNPC N C D
Sbjct: 4 DVDECSLGANPCEHAG--KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 191 GVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQA 250
+ +F C C PG+ G CE + C + PC ++ C+D +F C G +
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDL 121
Query: 251 H 251
H
Sbjct: 122 H 122
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 59 VINDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM 118
V N ND+ TC D +G F C C G+ G HC+ D+CAS PC + G C+D ++ F
Sbjct: 49 VSNPCQNDA---TCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQ 105
Query: 119 CQCRPGFVGLQCEADIDECL 138
C+C GF G C+ D+ L
Sbjct: 106 CECPTGFTGHLCQVDLHHIL 125
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 96 IDDCA--SEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL 153
+D+C+ + PC++ G C++ L F CQC G+ G +CE D++EC+S+PC + T CLD
Sbjct: 3 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT--CLDQ 60
Query: 154 DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
+FQC C GY GV CE N D+C S+PCL+ G C D + +F C+CP G+TG C+
Sbjct: 61 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ 116
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
G C + +G F C C G+TG C+ +++C S PCQN +C+D + F C C PG+ G+
Sbjct: 17 GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH 76
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
CE + DEC S PC G +CLD N+FQCEC G+TG +C+
Sbjct: 77 CEVNTDECASSPCLHNG--RCLDKINEFQCECPTGFTGHLCQ 116
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Query: 133 DIDECL--SDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRD 190
D+DEC ++PC G KC++ F+C+C GYTG CE ++++C SNPC N C D
Sbjct: 2 DVDECSLGANPCEHAG--KCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 59
Query: 191 GVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFC 235
+ +F C C PG+ G CE + C + PC ++ C+D +F C
Sbjct: 60 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQC 104
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 173 NIDDCK--SNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLF 230
++D+C +NPC + G C + + F C C G+TG RCE D+ C + PCQNDA C+D
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQI 61
Query: 231 QDFFCVSSHSVQG 243
+F C+ +G
Sbjct: 62 GEFQCICMPGYEG 74
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 19/132 (14%)
Query: 97 DDCASEPCQNGGSCVDML-DG-FMCQCRPGFVGLQCEADID------------ECLSDPC 142
D C PC+NGG C+ L DG F C+C GF C + ++ C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 143 SPEGTDKCL-----DLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTC 197
GT + D + C+C G+ G+ C+ NI++C+ PC NGGIC D VA ++C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 198 DCPPGWTGSRCE 209
+CP + G C+
Sbjct: 121 ECPGEFMGRNCQ 132
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 21/114 (18%)
Query: 77 GGFSCSCDLGFTGKHCQHLID------------DCASEPCQNGGSCV-------DMLDGF 117
G FSC C GFT +C +++ C PC NGG+C D G+
Sbjct: 21 GSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGY 80
Query: 118 MCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
+C+C GF G+ C+ +I+EC +PC G C DL + CEC + G C+
Sbjct: 81 VCKCPRGFNGIHCQHNINECEVEPCKNGGI--CTDLVANYSCECPGEFMGRNCQ 132
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 74 DLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D G+ C C GF G HCQH I++C EPC+NGG C D++ + C+C F+G C+
Sbjct: 75 DTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMGRNCQ 132
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 32 SIAYRANGAVANLCLKPTFISPTPLFPVINDTPNDSIP--GTCTDLVGGFSCSCDLGFTG 89
S AYR + + +C P + IN+ + G CTDLV +SC C F G
Sbjct: 69 SEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFMG 128
Query: 90 KHCQH 94
++CQ+
Sbjct: 129 RNCQY 133
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG---IC 188
+D D+C S PC G+ C D + C C + G CET+ DD NGG C
Sbjct: 45 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYC 102
Query: 189 RDGVA-KFTCDCPPGWT 204
D K +C C G++
Sbjct: 103 SDHTGTKRSCRCHEGYS 119
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
D C + PCQN +C D Q + C + +GR
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 22/144 (15%)
Query: 74 DLVGGFSC------SCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVG 127
D G ++C +C G+ G C I P GSC D C+C+ G+ G
Sbjct: 39 DFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSP--KHGSCKLPGD---CRCQYGWQG 93
Query: 128 LQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN-PCLNGG 186
L C D+C+ P G + +QC C + G +C+ +++ C ++ PCLNGG
Sbjct: 94 LYC----DKCIPHPGCVHGI-----CNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGG 144
Query: 187 ICRD-GVAKFTCDCPPGWTGSRCE 209
C + G K+ C CP G++G CE
Sbjct: 145 TCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 121 CRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN 180
C G++G +C I CSP+ L D C C G+ G+ C D C +
Sbjct: 54 CMEGWMGPECNRAI---CRQGCSPKHGSCKLPGD----CRCQYGWQGLYC----DKCIPH 102
Query: 181 PCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC-TNMPCQNDANCIDLFQDFF 234
P GIC + + C C W G C+KD+ C T+ PC N C + D +
Sbjct: 103 PGCVHGICNE---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKY 154
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG---IC 188
+D D+C S PC G+ C D + C C + G CET+ DD NGG C
Sbjct: 45 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYC 102
Query: 189 RDGVA-KFTCDCPPGWT 204
D K +C C G++
Sbjct: 103 SDHTGTKRSCRCHEGYS 119
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
D C + PCQN +C D Q + C + +GR
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>pdb|1O5D|L Chain L, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2B7D|L Chain L, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|L Chain L, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|L Chain L, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2FLR|L Chain L, Novel 5-azaindole Factor Viia Inhibitors
pdb|3ELA|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 152
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG---IC 188
+D D+C S PC G+ C D + C C + G CET+ DD NGG C
Sbjct: 45 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYC 102
Query: 189 RDGVA-KFTCDCPPGWT 204
D K +C C G++
Sbjct: 103 SDHTGTKRSCRCHEGYS 119
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
D C + PCQN +C D Q + C + +GR
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 107
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 108 TKRSCRCHEGYSLLADGVSCTPTVE 132
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 82
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG---IC 188
+D D+C S PC G+ C D + C C + G CET+ DD NGG C
Sbjct: 45 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYC 102
Query: 189 RDGVA-KFTCDCPPGWT 204
D K +C C G++
Sbjct: 103 SDHTGTKRSCRCHEGYS 119
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
D C + PCQN +C D Q + C + +GR
Sbjct: 46 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
>pdb|2YGQ|A Chain A, Wif Domain-Epidermal Growth Factor (Egf)-Like Domains 1-3
Of Human Wnt Inhibitory Factor 1 In Complex With
1,2-Dipalmitoylphosphatidylcholine
Length = 324
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 69 PGTCTDLVGGFS-----CSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRP 123
PG C + GGF C C GF G HC+ + + C NGG CV GF C C P
Sbjct: 152 PGGCRN--GGFCNERRICECPDGFHGPHCEKAL---CTPRCMNGGLCVT--PGF-CICPP 203
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKF---QCECNVGYTGVMCETNIDDCKSN 180
GF G+ C D C + C + F +C C G G CE I C
Sbjct: 204 GFYGVNC--DKANC---------STTCFNGGTCFYPGKCICPPGLEGEQCE--ISKC-PQ 249
Query: 181 PCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
PC NGG C + K C C G+ G C K +
Sbjct: 250 PCRNGGKC---IGKSKCKCSKGYQGDLCSKPV 278
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 104 CQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNV 163
C+NGG C + +C+C GF G CE + C+P + L + F C C
Sbjct: 155 CRNGGFCNERR---ICECPDGFHGPHCEKAL-------CTPRCMNGGLCVTPGF-CICPP 203
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQND 223
G+ GV C+ +C S C NGG C C CPPG G +CE I C PC+N
Sbjct: 204 GFYGVNCDK--ANC-STTCFNGGTC---FYPGKCICPPGLEGEQCE--ISKCPQ-PCRNG 254
Query: 224 ANCI 227
CI
Sbjct: 255 GKCI 258
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK----CLDLD 154
C S+PC + GSC D + G+ C C PG+ G CE +E C PE TD CL
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNE-----CHPERTDGCQHFCLPGQ 62
Query: 155 NKFQCECNVGY 165
+ C C GY
Sbjct: 63 ESYTCSCAQGY 73
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC 215
C S PCL+ G C+D + +TC C PG+ GS CE C
Sbjct: 8 CISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNEC 46
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEP---CQNGGSCVDMLDGFMCQCRPGF 125
G+C D + G++C+C G+ G +C+ ++C E CQ+ C+ + + C C G+
Sbjct: 17 GSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGY 73
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDC---KSNPCLNGGICRDGVA 193
C+S PC G+ C D + C C+ GY G CE ++C +++ C + C G
Sbjct: 8 CISQPCLHNGS--CQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQE 63
Query: 194 KFTCDCPPGW 203
+TC C G+
Sbjct: 64 SYTCSCAQGY 73
>pdb|1DVA|L Chain L, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|M Chain M, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
Length = 101
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 66
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 67 TKRSCRCHEGYSLLADGVSCTPTVE 91
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 7 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 41
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG---IC 188
+D D+C S PC G+ C D + C C + G CET+ DD NGG C
Sbjct: 4 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYC 61
Query: 189 RDGVA-KFTCDCPPGWT 204
D K +C C G++
Sbjct: 62 SDHTGTKRSCRCHEGYS 78
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
D C + PCQN +C D Q + C + +GR
Sbjct: 5 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 38
>pdb|1J9C|L Chain L, Crystal Structure Of Tissue Factor-Factor Viia Complex
Length = 95
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LD 154
D CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTG 60
Query: 155 NKFQCECNVGYT----GVMCETNID 175
K C C+ GY+ GV C ++
Sbjct: 61 TKRSCRCHEGYSLLADGVSCTPTVE 85
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 1 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 35
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 215 CTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
C + PCQN +C D Q + C + +GR
Sbjct: 3 CASSPCQNGGSCKDQLQSYICFCLPAFEGR 32
>pdb|1QFK|L Chain L, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
Length = 104
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LDNK 156
CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D K
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 157 FQCECNVGYT----GVMCETNID 175
C C+ GY+ GV C ++
Sbjct: 62 RSCRCHEGYSLLADGVSCTPTVE 84
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
C S+PC NGG C+D + + C C P + G CE
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 34
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 215 CTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
C + PCQN +C D Q + C + +GR
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGR 31
>pdb|1F7E|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, 20 Structures
pdb|1F7M|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii, Nmr, Minimized Average Structure
pdb|1FF7|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, 20 Structures
pdb|1FFM|A Chain A, The First Egf-Like Domain From Human Blood Coagulation
Fvii (Fucosylated At Ser-60), Nmr, Minimized Average
Structure
Length = 46
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDE 136
D CAS PCQNGGSC D L ++C C P F G CE D+
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDD 43
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 172 TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE--KDIGS 214
++ D C S+PC NGG C+D + + C C P + G CE KD GS
Sbjct: 1 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDGS 45
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDD 176
+D D+C S PC G+ C D + C C + G CET+ DD
Sbjct: 1 SDGDQCASSPCQNGGS--CKDQLQSYICFCLPAFEGRNCETHKDD 43
>pdb|2PUQ|L Chain L, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
Length = 94
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK-CLD-LDNK 156
CAS PCQNGGSC D L ++C C P F G CE D+ L G ++ C D K
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTK 61
Query: 157 FQCECNVGYT----GVMCETNID 175
C C+ GY+ GV C ++
Sbjct: 62 RSCRCHEGYSLLADGVSCTPTVE 84
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
C S+PC NGG C+D + + C C P + G CE
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 34
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 215 CTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
C + PCQN +C D Q + C + +GR
Sbjct: 2 CASSPCQNGGSCKDQLQSYICFCLPAFEGR 31
>pdb|1BF9|A Chain A, N-Terminal Egf-Like Domain From Human Factor Vii, Nmr, 23
Structures
Length = 41
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 23/35 (65%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D CAS PCQNGGSC D L ++C C P F G CE
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C S+PC NGG C+D + + C C P + G CE
Sbjct: 4 DQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE 38
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 24/142 (16%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKDI------GSC---TNMPCQNDANC 226
C SNPC N G+CRDG ++ CDC G+ G CE++ GS +P
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEA 681
Query: 227 IDLFQDF----------FCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFHEYATI 276
D+ F S S R + A + V+L + F ++ +
Sbjct: 682 EDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLGKGPETLFAGYN----L 737
Query: 277 NDGQWHHVAIVWTQGTLTLITE 298
ND +WH V +V +L L +
Sbjct: 738 NDNEWHTVRVVRRGKSLKLTVD 759
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCR-PGFVGLQCEAD 133
C S PC+N G C D + ++C C G++G CE +
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 657
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 32/231 (13%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKC 150
H + C + NG + D C G + CE C D CS +G C
Sbjct: 977 HAKEGFQGCLASVDLNGRLPDLISDALFCN---GQIERGCEGPSTTCQEDSCSNQGV--C 1031
Query: 151 LDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPG-WTGSRC 208
L + F C+C++ ++G +C N I G + T PP +R
Sbjct: 1032 LQQWDGFSCDCSMTSFSGPLC---------NDPGTTYIFSKGGGQITYKWPPNDRPSTRA 1082
Query: 209 EK-DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAF 267
++ IG T Q +A + V S S G + H + V D
Sbjct: 1083 DRLAIGFST---VQKEAVLVR-------VDSSSGLGDYLELHIHQGKIGVKFNVGTDD-- 1130
Query: 268 LAFHEY-ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQY 317
+A E A INDG++H V + G TL + +E Y +G+ L +
Sbjct: 1131 IAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPV--IERYPAGRQLTIF 1179
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 182 CLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ-------DF 233
CLNGG+C + CDC G+ G C + ++ C DL Q D
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDE 257
Query: 234 FCVSSHSVQGRRPLIQAHSSG---------VQVSLFPEL-QDAFLAFHE--YATINDGQW 281
+S ++Q ++ S VSL L AF A E ND W
Sbjct: 258 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAW 317
Query: 282 HHVAIVWTQGTLTLITEGLI 301
H V + +T+ +G++
Sbjct: 318 HDVKVTRNLRQVTISVDGIL 337
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGY-TGVMCETN---IDDCKSNPCL-NGGI 187
DIDEC P G +C++ F+C+C+ GY +G M N ID+C+ +P L GG+
Sbjct: 2 DIDECRISP-DLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 188 CRDGVAKFTCDCPPG 202
C + + C+CPPG
Sbjct: 61 CHNTEGSYRCECPPG 75
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 96 IDDCASEPCQNG-GSCVDMLDGFMCQC----RPGFVGLQCEADIDECLSDPCSPEGTDKC 150
ID+C P G G CV+ F C+C GF+ ++ DIDEC DP G C
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGG-VC 61
Query: 151 LDLDNKFQCECNVGY 165
+ + ++CEC G+
Sbjct: 62 HNTEGSYRCECPPGH 76
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 70 GTCTDLVGGFSCSCDLGFTG-----KHCQHLIDDCASEPCQ-NGGSCVDMLDGFMCQCRP 123
G C + G F C CD G+ K+C ID+C +P GG C + + C+C P
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMD-IDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 124 G 124
G
Sbjct: 75 G 75
>pdb|3FLP|A Chain A, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|B Chain B, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|C Chain C, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|D Chain D, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|E Chain E, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|F Chain F, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|G Chain G, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|H Chain H, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|I Chain I, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|J Chain J, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|K Chain K, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|L Chain L, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|M Chain M, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLP|N Chain N, Crystal Structure Of Native Heptameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLR|A Chain A, Crystal Structure Of Native Octameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLR|B Chain B, Crystal Structure Of Native Octameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLT|A Chain A, Crystal Structure Of Pe-Bound Octameric Sap-Like Pentraxin
From Limulus Polyphemus
pdb|3FLT|B Chain B, Crystal Structure Of Pe-Bound Octameric Sap-Like Pentraxin
From Limulus Polyphemus
Length = 217
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 276 INDGQWHHVAIVWT--QGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAY 333
I GQW+HV VW+ G + + G G +EN G G + G VV+G+ + +
Sbjct: 94 IELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKGHQISAGGTVVIGQEQDKIGGGF 153
Query: 334 TE-AGFEGKLTKVQIWNRAL 352
E + G+L+ +Q+W+ AL
Sbjct: 154 EEQESWSGELSDLQVWDEAL 173
>pdb|1EDM|B Chain B, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1EDM|C Chain C, Epidermal Growth Factor-Like Domain From Human Factor Ix
pdb|1IXA|A Chain A, The Three-Dimensional Structure Of The First Egf-Like
Module Of Human Factor Ix: Comparison With Egf And Tgf-A
Length = 39
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+SNPCLNGG C+D + + C CP G+ G CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C S PC NGGSC D ++ + C C GF G CE
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKD 211
C SNPC N G+CRDG ++ CDC G+ G CE++
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 432
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCR-PGFVGLQCEAD 133
C S PC+N G C D + ++C C G++G CE +
Sbjct: 397 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 432
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 84/228 (36%), Gaps = 32/228 (14%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKC 150
H + C + NG + D C G + CE C D CS +G C
Sbjct: 761 HAKEGFQGCLASVDLNGRLPDLISDALFCN---GQIERGCEGPSTTCQEDSCSNQGV--C 815
Query: 151 LDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPG-WTGSRC 208
L + F C+C++ ++G +C N I G + T PP +R
Sbjct: 816 LQQWDGFSCDCSMTSFSGPLC---------NDPGTTYIFSKGGGQITYKWPPNDRPSTRA 866
Query: 209 EK-DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAF 267
++ IG T Q +A + V S S G + H + V D
Sbjct: 867 DRLAIGFST---VQKEAVLVR-------VDSSSGLGDYLELHIHQGKIGVKFNVGTDD-- 914
Query: 268 LAFHEY-ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSL 314
+A E A INDG++H V + G TL + +E Y +G+ L
Sbjct: 915 IAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPV--IERYPAGRQL 960
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKD 211
C SNPC N G+CRDG ++ CDC G+ G CE++
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 657
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCR-PGFVGLQCEAD 133
C S PC+N G C D + ++C C G++G CE +
Sbjct: 622 CLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCERE 657
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 32/231 (13%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKC 150
H + C + NG + D C G + CE C D CS +G C
Sbjct: 986 HAKEGFQGCLASVDLNGRLPDLISDALFCN---GQIERGCEGPSTTCQEDSCSNQGV--C 1040
Query: 151 LDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPG-WTGSRC 208
L + F C+C++ ++G +C N I G + T PP +R
Sbjct: 1041 LQQWDGFSCDCSMTSFSGPLC---------NDPGTTYIFSKGGGQITYKWPPNDRPSTRA 1091
Query: 209 EK-DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAF 267
++ IG T Q +A + V S S G + H + V D
Sbjct: 1092 DRLAIGFST---VQKEAVLVR-------VDSSSGLGDYLELHIHQGKIGVKFNVGTDD-- 1139
Query: 268 LAFHEY-ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQY 317
+A E A INDG++H V + G TL + +E Y +G+ L +
Sbjct: 1140 IAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPV--IERYPAGRQLTIF 1188
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 182 CLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ-------DF 233
CLNGG+C + CDC G+ G C + ++ C DL Q D
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDE 257
Query: 234 FCVSSHSVQGRRPLIQAHSSG---------VQVSLFPEL-QDAFLAFHE--YATINDGQW 281
+S ++Q ++ S VSL L AF A E ND W
Sbjct: 258 ITLSFKTLQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAW 317
Query: 282 HHVAIVWTQGTLTLITEGLI 301
H V + +T+ +G++
Sbjct: 318 HDVKVTRNLRQVTISVDGIL 337
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKD 211
D C+ NPCLNGG+C+D + + C C G+ G CE D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEAD 133
D C PC NGG C D ++ + C C+ GF G CE D
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELD 85
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID-DCKSNPCLNGGICRD 190
D D+C +PC G C D N ++C C VG+ G CE + + K+ C C+
Sbjct: 46 VDGDQCEPNPCLNGGL--CKDDINSYECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKT 101
Query: 191 GV-AKFTCDCPPGWTGSRCEKDIGSCTNMPC 220
G +K C C G+ + +K PC
Sbjct: 102 GADSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQ 93
G C D + + C C +GF GK+C+
Sbjct: 60 GLCKDDINSYECWCQVGFEGKNCE 83
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+ +PCLN G C+DG+ +TC C G+ G CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C PC N G C D + + C C GF G CE
Sbjct: 4 DQCEGHPCLNQGHCKDGIGDYTCTCAEGFEGKNCE 38
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQ 93
G C D +G ++C+C GF GK+C+
Sbjct: 15 GHCKDGIGDYTCTCAEGFEGKNCE 38
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 61/146 (41%), Gaps = 30/146 (20%)
Query: 83 CDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADID-----EC 137
C+ G C HL C + C N G C + D C C PGF+G CE +
Sbjct: 189 CEAQKWGPECNHL---CTA--CMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRT 241
Query: 138 LSDPCSPEGTDKCLD----LDNKFQCECNVGYTGVMCETNID------DCKSN-PCLNGG 186
+ CS G + C L + + C C G+ G+ C DCK C NG
Sbjct: 242 CKERCS--GQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGE 299
Query: 187 ICRDGVAKFT-CDCPPGWTGSRCEKD 211
+C +F C C PGW G +CE++
Sbjct: 300 MC----DRFQGCLCSPGWQGLQCERE 321
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Query: 79 FSCSCDLGFTGKHCQHLID------DCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEA 132
+ CSC G+ G C DC N G D G C C PG+ GLQCE
Sbjct: 263 YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG--CLCSPGWQGLQCER 320
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETN 173
+ P T K +DL + E N G +C+ +
Sbjct: 321 E--------GIPRMTPKIVDLPDHI--EVNSGKFNPICKAS 351
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKF 195
EC+ + CS E + + +K N G CET+ PC N G C+DG+ ++
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETS-------PCQNQGKCKDGLGEY 63
Query: 196 TCDCPPGWTGSRCE 209
TC C G+ G CE
Sbjct: 64 TCTCLEGFEGKNCE 77
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL----CSLDNGDCDQFCHEE 98
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 99 QNSVVCSCARGYT 111
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDD-CASEPCQNGGSCVDMLDGFMCQCRPGFV 126
G C D +G ++C+C GF GK+C+ C+ + C + + +C C G+
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYT 111
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 77
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE CS + D C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFT----RKLCSLDNGDCDQFCHEE 98
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 99 QNSVVCSCARGYT 111
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQ 93
G C D +G ++C+C GF GK+C+
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCE 77
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
+++C S PCQN +C+D + F C C PG+ G+ CE
Sbjct: 2 VNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
++++C SNPC N C D + +F C C PG+ G CE
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEGVYCE 37
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
D++EC+S+PC + T CLD +FQC C GY GV CE
Sbjct: 1 DVNECISNPCQNDAT--CLDQIGEFQCICMPGYEGVYCE 37
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQG 243
D+ C + PCQNDA C+D +F C+ +G
Sbjct: 1 DVNECISNPCQNDATCLDQIGEFQCICMPGYEG 33
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+ +PCLN G C+ G+ +TC C G+ G CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C PC N G C + + C C GF G CE
Sbjct: 48 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 82
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 82
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 48 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 103
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 104 QNSVVCSCARGYT 116
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL----CSLDNGDCDQFCHEE 58
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 59 QNSVVCSCARGYT 71
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQ 93
G C D +G ++C+C GF GK+C+
Sbjct: 14 GKCKDGLGEYTCTCLEGFEGKNCE 37
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C + PCQN G C D L + C C GF G CE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG----IC 188
D D+C + PC +G KC D ++ C C G+ G CE S L+ G C
Sbjct: 3 DGDQCETSPCQNQG--KCKDGLGEYTCTCLEGFEGKNCELFTRKLCS---LDNGDCDQFC 57
Query: 189 RDGVAKFTCDCPPGWT 204
+ A C C G+T
Sbjct: 58 HEEQASVVCSCARGYT 73
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+ +PCLN G C+ G+ +TC C G+ G CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C PC N G C + + C C GF G CE
Sbjct: 4 DQCEGHPCLNQGHCKXGIGDYTCTCAEGFEGKNCE 38
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 39
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 5 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 60
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 61 QNSVVCSCARGYT 73
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 38
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 4 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 59
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 60 QNSVVCSCARGYT 72
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+DG+ ++TC C G+ G CE
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE 37
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C D L + C C GF G CE + CS + D C +
Sbjct: 3 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 58
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 59 QNSVVCSCARGYT 71
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKD 211
D C+ NPCLNGG+C+ + + C C G+ G CE D
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELD 85
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNK 156
D C PC NGG C ++ + C C+ GF G CE D + + + D+K
Sbjct: 49 DQCEPNPCLNGGLCKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQFCK--TGADSK 106
Query: 157 FQCECNVGY 165
C C GY
Sbjct: 107 VLCSCTTGY 115
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID-DCKSNPCLNGGICRD 190
D D+C +PC G C N ++C C VG+ G CE + + K+ C C+
Sbjct: 46 VDGDQCEPNPCLNGGL--CKXDINSYECWCQVGFEGKNCELDATCNIKNGRCKQ--FCKT 101
Query: 191 GV-AKFTCDCPPGWTGSRCEKDIGSCTNMPC 220
G +K C C G+ + +K PC
Sbjct: 102 GADSKVLCSCTTGYRLAPDQKSCKPAVPFPC 132
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADID 135
C + C G CV+ ++ + C+C PGF GL+CE ++
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM 218
C + C G C + + +TC C PG++G +CE+ I +CT +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ-IVNCTAL 162
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLID 97
G C + + ++C CD GF+G C+ +++
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCEQIVN 158
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID 175
C + CS G +C++ N + C+C+ G++G+ CE ++
Sbjct: 122 CTNTSCSGHG--ECVETINNYTCKCDPGFSGLKCEQIVN 158
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
C + C G CV+ ++ + C+C PGF GL+CE
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLI 96
G C + + ++C CD GF+G C+ ++
Sbjct: 131 GECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
C + C G C + + +TC C PG++G +CE+ +
Sbjct: 122 CTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
C + CS G +C++ N + C+C+ G++G+ CE
Sbjct: 122 CTNTSCSGHG--ECVETINNYTCKCDPGFSGLKCE 154
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
D C+++PC N G C+ G+ ++TC C G+ G CE
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCE 38
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD---KCLDL 153
D C + PCQN G C L + C C GF G CE + CS + D C +
Sbjct: 4 DQCETSPCQNQGKCKXGLGEYTCTCLEGFEGKNCELFTRK----LCSLDNGDCDQFCHEE 59
Query: 154 DNKFQCECNVGYT 166
N C C GYT
Sbjct: 60 QNSVVCSCARGYT 72
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGS 214
C++NPCL+GG C + C CP G+TG C+ D +
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVDTAA 85
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 91 HCQHLIDD-CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEAD 133
HCQ L C + PC +GG C+++ +C C G+ G C+ D
Sbjct: 39 HCQRLASQACRTNPCLHGGRCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETN 173
C ++PC G +CL+++ C C VGYTG C+ +
Sbjct: 48 CRTNPCLHGG--RCLEVEGHRLCHCPVGYTGPFCDVD 82
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 15/48 (31%)
Query: 365 CRTEPVLHTGLVLTWTGYDDINGGVERVVPSHCSQHICPPGYTGPECD 412
CRT P LH G L G+ + CP GYTGP CD
Sbjct: 48 CRTNPCLHGGRCLEVEGHRLCH---------------CPVGYTGPFCD 80
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 87 FTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDE 136
KH C C G C++ + + C C PGF G +CE D+
Sbjct: 110 LKKKHALCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 67 SIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDD 98
S G C + +G ++CSC GF G C+++ DD
Sbjct: 128 SKQGECLETIGNYTCSCYPGFYGPECEYVRDD 159
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
C+ C G C + + +TC C PG+ G CE
Sbjct: 122 CQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 154
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 182 CLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
C G C DG+ F+CDC GW G C++++
Sbjct: 15 CCGHGTCIDGIGSFSCDCRSGWEGRFCQREV 45
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLID--DCASEPCQNGGS---CVDMLDGFMCQCRPG 124
GTC D +G FSC C G+ G+ CQ + +C+ + NGG C++ + C C PG
Sbjct: 19 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWRRCSCAPG 75
Query: 125 F 125
+
Sbjct: 76 Y 76
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 95 LIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLD 154
L CAS C +G +C+D + F C CR G+ G C+ ++ + T CL+
Sbjct: 7 LEHPCASLCCGHG-TCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEV 65
Query: 155 NKFQCECNVGY 165
+C C GY
Sbjct: 66 GWRRCSCAPGY 76
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 138 LSDPCSPE--GTDKCLDLDNKFQCECNVGYTGVMCETNID--DCKSNPCLNGG---ICRD 190
L PC+ G C+D F C+C G+ G C+ + +C + NGG C +
Sbjct: 7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLE 63
Query: 191 GVAKFTCDCPPGW 203
V C C PG+
Sbjct: 64 EVGWRRCSCAPGY 76
>pdb|1TPG|A Chain A, F1-G Module Pair Residues 1-91 (C83s) Of Tissue-Type
Plasminogen Activator (T-Pa) (Nmr, 298k, Ph2.95,
Representative Structure)
Length = 91
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 159 CECNVGYTGVMCETNIDDCKSNPCLNGGICRDGV--AKFTCDCPPGWTGSRCEKD 211
C CN G + C C NGG C+ + + F C CP G+ G CE D
Sbjct: 34 CWCNSGRAQCH-SVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 96 IDDCASEPCQNGGSCVDML--DGFMCQCRPGFVGLQCEAD 133
+ C+ C NGG+C L F+CQC GF G CE D
Sbjct: 48 VKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEID 87
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGY--TGVMCETNIDDCK-SNPCLNGGIC 188
D+DEC G +C++ D ++CEC GY G C + D+C NPC N G C
Sbjct: 3 VDMDECKEPDVCKHG--QCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPCGN-GTC 58
Query: 189 RDGVAKFTCDCPPGW 203
++ + F C C G+
Sbjct: 59 KNVIGGFECTCEEGF 73
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 70 GTCTDLVGGFSCSCDLGF--TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
G C + G + C C G+ G C + PC NG +C +++ GF C C GF
Sbjct: 17 GQCINTDGSYRCECPFGYILAGNECVDTDECSVGNPCGNG-TCKNVIGGFECTCEEGF 73
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFV--GLQCEADIDEC-LSDPCSPEGTDKCLD 152
+D+C G C++ + C+C G++ G +C D DEC + +PC G C +
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNEC-VDTDECSVGNPC---GNGTCKN 60
Query: 153 LDNKFQCECNVGY 165
+ F+C C G+
Sbjct: 61 VIGGFECTCEEGF 73
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 96 IDDCASEPC--QNGG---SCVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEG 146
I +C + C NGG C D+ G+ C C GF +CE DIDEC D CS
Sbjct: 35 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--- 90
Query: 147 TDKCLDLDNKFQCECNVGY 165
C++L+ ++C+C G+
Sbjct: 91 -QLCVNLEGGYKCQCEEGF 108
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 53 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 108
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 51/237 (21%)
Query: 110 CVDMLDGF------MCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNV 163
V MLD F M Q L E++ + EG +
Sbjct: 124 VVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA-----EGIHRT------------- 165
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICR----DGVAKFTCDCPPGWTGSRCEKDIGSCTNMP 219
Y ++ E +D PC+ I R +G + D W+ + TNM
Sbjct: 166 KYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHN--------FTNML 217
Query: 220 CQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFHEYATINDG 279
DA +L + + + S G + AH+S + S L D +L+F G
Sbjct: 218 GYTDAQFTELMRLYLTIHSDHEGGN---VSAHTSHLVGS---ALSDPYLSFAAAMNGLAG 271
Query: 280 QWHHVA----IVWTQGTLTLITEGLIAGKVENY-----GSGKSLPQYGWVVLGKPRP 327
H +A +VW + + + K+ +Y SG+ +P YG VL K P
Sbjct: 272 PLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 328
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 83/237 (35%), Gaps = 51/237 (21%)
Query: 110 CVDMLDGF------MCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNV 163
V MLD F M Q L E++ + EG +
Sbjct: 124 VVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYA-----EGIHRT------------- 165
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICR----DGVAKFTCDCPPGWTGSRCEKDIGSCTNMP 219
Y ++ E +D PC+ I R +G + D W+ + TNM
Sbjct: 166 KYWELIYEDCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHN--------FTNML 217
Query: 220 CQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFHEYATINDG 279
DA +L + + + S G + AH+S + S L D +L+F G
Sbjct: 218 GYTDAQFTELMRLYLTIHSDHEGGN---VSAHTSHLVGS---ALSDPYLSFAAAMNGLAG 271
Query: 280 QWHHVA----IVWTQGTLTLITEGLIAGKVENY-----GSGKSLPQYGWVVLGKPRP 327
H +A +VW + + + K+ +Y SG+ +P YG VL K P
Sbjct: 272 PLHGLANQEVLVWLTQLQKEVGKDVSDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 328
>pdb|1HRE|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
pdb|1HRF|A Chain A, Solution Structure Of The Epidermal Growth Factor-Like
Domain Of Heregulin-Alpha, A Ligand For P180erb4
Length = 67
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 9/55 (16%)
Query: 182 CLNGGIC-----RDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ 231
C+NGG C +++ C C PG+TG+RC +++ M QN +L+Q
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV----PMKVQNQEKAEELYQ 66
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 104 CQNGGSCVDMLD-----GFMCQCRPGFVGLQCEADI 134
C NGG C + D ++C+C+PGF G +C ++
Sbjct: 16 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 51
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCEK 210
CLNGG+C + + +TC+C G++G RCE
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCEH 44
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 182 CLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
C G C G+ F+CDC GW G C++++
Sbjct: 22 CCGHGTCIXGIGSFSCDCRSGWEGRFCQREV 52
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLID--DCASEPCQNGGS---CVDMLDGFMCQCRPG 124
GTC +G FSC C G+ G+ CQ + +C+ + NGG C++ + C C PG
Sbjct: 26 GTCIXGIGSFSCDCRSGWEGRFCQREVSFLNCSLD---NGGCTHYCLEEVGWRRCSCAPG 82
Query: 125 F 125
+
Sbjct: 83 Y 83
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 68
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 105 QNGG---SCVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKF 157
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ +
Sbjct: 6 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS----QLCVNLEGGY 60
Query: 158 QCECNVGY 165
+C+C G+
Sbjct: 61 KCQCEEGF 68
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 96 IDDCASEPC--QNGG---SCVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEG 146
I +C + C NGG C D+ G+ C C GF +CE DIDEC D CS
Sbjct: 307 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--- 362
Query: 147 TDKCLDLDNKFQCECNVGY 165
C++L+ ++C+C G+
Sbjct: 363 -QLCVNLEGGYKCQCEEGF 380
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 72 CTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 326 CNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 380
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 29/124 (23%)
Query: 104 CQNGGSCVDMLDGFMCQCRPGFVG--------LQCEADIDEC--LSDPCSPEGTDKCLDL 153
C SCV+ C+C PGF ++ DI+EC LS + +D C +
Sbjct: 9 CPQDSSCVNAT---ACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSD-CWNT 64
Query: 154 DNKFQCECNVGYTGV------------MCETNIDDCKS--NPCLNGGICRDGVAKFTCDC 199
+ + C C+ GY V C+ ++D+C S + C + +C + V ++C C
Sbjct: 65 EGSYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSCRC 123
Query: 200 PPGW 203
PGW
Sbjct: 124 RPGW 127
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGY 165
C S+PC PE C + ++ + C CN GY
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 14/79 (17%)
Query: 96 IDDCASEPC--QNGG---SCVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEG 146
I +C + C NGG C D+ G+ C C GF +CE DIDEC D CS
Sbjct: 289 IKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--- 344
Query: 147 TDKCLDLDNKFQCECNVGY 165
C++L+ ++C+C G+
Sbjct: 345 -QLCVNLEGGYKCQCEEGF 362
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 307 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 362
>pdb|3CFW|A Chain A, L-selectin Lectin And Egf Domains
Length = 164
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHL 95
G C +++ ++C+CD+G+ G CQ +
Sbjct: 131 GECVEIINNYTCNCDVGYYGPQCQFV 156
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
C C G CV++++ + C C G+ G QC+
Sbjct: 122 CQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 137 CLSDPCSP---EGTDKCLDLDNKFQCECNVGYTGVMCE 171
C + C P G +C+++ N + C C+VGY G C+
Sbjct: 117 CYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGY----TGVMCETNIDDCKSNPCLNGGIC 188
D+DEC P S GT C ++ F+CEC GY CE +ID+C N C +C
Sbjct: 2 DVDECSLKP-SICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCAQ--LC 57
Query: 189 RDGVAKFTCDCPPGWTGSRCEKDIGSC 215
+ +TC C G G + +D SC
Sbjct: 58 VNYPGGYTCYC-DGKKGFKLAQDQKSC 83
>pdb|1HAE|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
20 Structures
pdb|1HAF|A Chain A, Heregulin-Alpha Epidermal Growth Factor-Like Domain, Nmr,
Minimized Average Structure
Length = 63
Score = 31.6 bits (70), Expect = 0.90, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 182 CLNGGIC-----RDGVAKFTCDCPPGWTGSRCEKDI 212
C+NGG C +++ C C PG+TG+RC +++
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 104 CQNGGSCVDMLD-----GFMCQCRPGFVGLQCEADI 134
C NGG C + D ++C+C+PGF G +C ++
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 98 DCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
C C G C++ + + C C PGF G +CE
Sbjct: 3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 176 DCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
C+ C G C + + +TC C PG+ G CE
Sbjct: 3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE 36
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 67 SIPGTCTDLVGGFSCSCDLGFTGKHCQHLID 97
S G C + +G ++CSC GF G C+++ +
Sbjct: 10 SKQGECLETIGNYTCSCYPGFYGPECEYVRE 40
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures Of
Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CLNGG+C + + +TC+C G++G RC+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 172 TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEK----DIGSC 215
TN+ D + C NGG C + V C CP +TG CEK + GSC
Sbjct: 363 TNVCDNELLHCQNGGTCHNNVR---CLCPAAYTGILCEKLRCEEAGSC 407
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 43
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 42
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDC 199
+ID+C+S+PC+N G+C++ F C+C
Sbjct: 3 DIDECESSPCIN-GVCKNSPGSFICEC 28
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 41
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 97 DDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
+ C S PCQN G C+ D + C C R GF G C
Sbjct: 19 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 54
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 97 DDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
+ C S PCQN G C+ D + C C R GF G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 97 DDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
+ C S PCQN G C+ D + C C R GF G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 97 DDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
+ C S PCQN G C+ D + C C R GF G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 37
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 99 CASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQC 130
C S PCQN G C+ D + C C R GF G C
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENC 60
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 97
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 36 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS----QLCVNLEGGYK 90
Query: 159 CECNVGY 165
C+C G+
Sbjct: 91 CQCEEGF 97
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 42 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 97
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 36 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS----QLCVNLEGGYK 90
Query: 159 CECNVGY 165
C+C G+
Sbjct: 91 CQCEEGF 97
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 65 NDSIPGTCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC 121
N C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQC 66
Query: 122 RPGF 125
GF
Sbjct: 67 EEGF 70
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ----LCVNLEGGYK 63
Query: 159 CECNVGY 165
C+C G+
Sbjct: 64 CQCEEGF 70
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 65 NDSIPGTCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC 121
N C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQC 66
Query: 122 RPGF 125
GF
Sbjct: 67 EEGF 70
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 9 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ----LCVNLEGGYK 63
Query: 159 CECNVGY 165
C+C G+
Sbjct: 64 CQCEEGF 70
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 45/131 (34%), Gaps = 17/131 (12%)
Query: 71 TCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC--RPGFVGL 128
T TD + ++ + Q + C PCQ G V +L G C C G GL
Sbjct: 421 TATDFAYSSTVRQNMKQALEEFQKEVSSCHCAPCQGNG--VPVLKGSRCDCICPVGSQGL 478
Query: 129 QCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGIC 188
CE K +D K+ C N +T C + P NGG
Sbjct: 479 ACEVSYR-------------KNTPIDGKWNCWSNWSSCSGRRKTRQRQCNNPPPQNGGSP 525
Query: 189 RDGVAKFTCDC 199
G A T DC
Sbjct: 526 CSGPASETLDC 536
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 71 TCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF 125
C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC GF
Sbjct: 18 VCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQCEEGF 73
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 12 NGGCSYVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ----LCVNLEGGYK 66
Query: 159 CECNVGY 165
C+C G+
Sbjct: 67 CQCEEGF 73
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 65 NDSIPGTCTDLVGGFSCSCDLGF---TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC 121
N C DL G+ C C GF + C+ ID+C +P CV++ G+ CQC
Sbjct: 12 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCED-IDEC-QDPDTCSQLCVNLEGGYKCQC 69
Query: 122 RPGF 125
GF
Sbjct: 70 EEGF 73
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 106 NGGS---CVDMLDGFMCQCRPGF---VGLQCEADIDECLS-DPCSPEGTDKCLDLDNKFQ 158
NGG C D+ G+ C C GF +CE DIDEC D CS C++L+ ++
Sbjct: 12 NGGCSHVCNDLKIGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ----LCVNLEGGYK 66
Query: 159 CECNVGY 165
C+C G+
Sbjct: 67 CQCEEGF 73
>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6
Length = 410
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 85/231 (36%), Gaps = 32/231 (13%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKC 150
H + C + NG + D C G + CE C D CS +G C
Sbjct: 145 HAKEGFQGCLASVDLNGRLPDLISDALFCN---GQIERGCEGPSTTCQEDSCSNQGV--C 199
Query: 151 LDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPG-WTGSRC 208
L + F C+C++ ++G +C N I G + T PP +R
Sbjct: 200 LQQWDGFSCDCSMTSFSGPLC---------NDPGTTYIFSKGGGQITYKWPPNDRPSTRA 250
Query: 209 EK-DIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAF 267
++ IG T Q +A + V S S G + H + V D
Sbjct: 251 DRLAIGFST---VQKEAVLVR-------VDSSSGLGDYLELHIHQGKIGVKFNVGTDD-- 298
Query: 268 LAFHEY-ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQY 317
+A E A INDG++H V + G TL + +E Y +G+ L +
Sbjct: 299 IAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPV--IERYPAGRQLTIF 347
>pdb|4G1E|B Chain B, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 738
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQC---EADIDECLSDPCSP-EGTDKCLDLDNK 156
S C NG + +C+C PG++G QC E D D CSP EG C
Sbjct: 445 SHRCNNGNG---TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 157 F--QCECNVG----YTGVMCETNIDDC---KSNPCLNGGICRDGVAKFTCDCPPGWTGSR 207
QC C+ TG CE + C K C G C G C C WTG
Sbjct: 502 LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYY 557
Query: 208 C 208
C
Sbjct: 558 C 558
>pdb|4G1M|B Chain B, Re-Refinement Of Alpha V Beta 3 Structure
Length = 692
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQC---EADIDECLSDPCSP-EGTDKCLDLDNK 156
S C NG + +C+C PG++G QC E D D CSP EG C
Sbjct: 445 SHRCNNGNG---TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 157 F--QCECNVG----YTGVMCETNIDDC---KSNPCLNGGICRDGVAKFTCDCPPGWTGSR 207
QC C+ TG CE + C K C G C G C C WTG
Sbjct: 502 LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYY 557
Query: 208 C 208
C
Sbjct: 558 C 558
>pdb|1JV2|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|B Chain B, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|B Chain B, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 692
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQC---EADIDECLSDPCSP-EGTDKCLDLDNK 156
S C NG + +C+C PG++G QC E D D CSP EG C
Sbjct: 445 SHRCNNGNG---TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 157 F--QCECNVG----YTGVMCETNIDDC---KSNPCLNGGICRDGVAKFTCDCPPGWTGSR 207
QC C+ TG CE + C K C G C G C C WTG
Sbjct: 502 LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYY 557
Query: 208 C 208
C
Sbjct: 558 C 558
>pdb|3IJE|B Chain B, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 695
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQC---EADIDECLSDPCSP-EGTDKCLDLDNK 156
S C NG + +C+C PG++G QC E D D CSP EG C
Sbjct: 445 SHRCNNGNG---TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 157 F--QCECNVG----YTGVMCETNIDDC---KSNPCLNGGICRDGVAKFTCDCPPGWTGSR 207
QC C+ TG CE + C K C G C G C C WTG
Sbjct: 502 LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYY 557
Query: 208 C 208
C
Sbjct: 558 C 558
>pdb|3FCS|B Chain B, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|D Chain D, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 690
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQC---EADIDECLSDPCSP-EGTDKCLDLDNK 156
S C NG + +C+C PG++G QC E D D CSP EG C
Sbjct: 445 SHRCNNGNG---TFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGEC 501
Query: 157 F--QCECNVG----YTGVMCETNIDDC---KSNPCLNGGICRDGVAKFTCDCPPGWTGSR 207
QC C+ TG CE + C K C G C G C C WTG
Sbjct: 502 LCGQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYY 557
Query: 208 C 208
C
Sbjct: 558 C 558
>pdb|3TX3|A Chain A, Cysz, A Putative Sulfate Permease
pdb|3TX3|B Chain B, Cysz, A Putative Sulfate Permease
Length = 249
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 299 GLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIK 331
GL+A KVE Y SG+SL G++ L K P +K
Sbjct: 106 GLLAEKVERYESGESLGDEGFLGLFKDIPRTLK 138
>pdb|1XX7|A Chain A, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|B Chain B, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|C Chain C, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|D Chain D, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|E Chain E, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
pdb|1XX7|F Chain F, Conserved Hypothetical Protein From Pyrococcus Furiosus
Pfu- 403030-001
Length = 184
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 9/40 (22%)
Query: 291 GTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNI 330
G++ LI L+AGK+ K +P+ GW++ G P P+++
Sbjct: 8 GSIDLI---LLAGKL------KRIPRMGWLIKGVPNPESV 38
>pdb|1A3P|A Chain A, Role Of The 6-20 Disulfide Bridge In The Structure And
Activity Of Epidermal Growth Factor, Nmr, 20 Structures
Length = 45
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CLNGG+ + + +TC+C G++G RC+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
>pdb|1P9J|A Chain A, Solution Structure And Dynamics Of The EgfTGF-Alpha
Chimera T1e
Length = 54
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 172 TNIDDC---KSNPCLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
++ +DC CL+ G+C + + K+ C+C G+ G RC+
Sbjct: 3 SHFNDCPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 45
>pdb|3T3M|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3M|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|B Chain B, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
pdb|3T3P|D Chain D, A Novel High Affinity Integrin Alphaiibbeta3 Receptor
Antagonist That Unexpectedly Displaces Mg2+ From The
Beta3 Midas
Length = 472
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 177 CKSNPCLNGGICRDGVAKF---TCDCPPGWTGSRCE 209
C++ N C +G F C C PGW GS+CE
Sbjct: 437 CQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCE 472
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 86 GFTGKHCQHLIDDCASEPCQN---GGSCVDMLDGFMCQCRPGFV 126
GF + ID+C P + C + L GF C CR G+V
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 119 CQCRPGFVG--LQCEADIDECLSD---PCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
C+C PGF G QCE + CL+ CS G +C CEC+ GY +C+
Sbjct: 540 CRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC------NVCECHSGYQLPLCQ 591
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,472,567
Number of Sequences: 62578
Number of extensions: 660347
Number of successful extensions: 1900
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 1355
Number of HSP's gapped (non-prelim): 532
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)