RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3619
(418 letters)
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 174 bits (443), Expect = 1e-53
Identities = 54/129 (41%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 96 IDDCA--SEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL 153
+D+C+ + PC++ G C++ L F CQC G+ G +CE D++EC+S+PC + T CLD
Sbjct: 5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDAT--CLDQ 62
Query: 154 DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIG 213
+FQC C GY GV CE N D+C S+PCL+ G C D + +F C+CP G+TG C+ D+
Sbjct: 63 IGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVDLH 122
Query: 214 SCTNMPCQN 222
+
Sbjct: 123 HILDAQKMV 131
Score = 163 bits (415), Expect = 1e-49
Identities = 46/117 (39%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
G C + +G F C C G+TG C+ +++C S PCQN +C+D + F C C PG+ G+
Sbjct: 19 GKCINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVH 78
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG 186
CE + DEC S PC G CLD N+FQCEC G+TG +C+ ++ +
Sbjct: 79 CEVNTDECASSPCLHNGR--CLDKINEFQCECPTGFTGHLCQVDLHHILDAQKMVWN 133
Score = 130 bits (328), Expect = 1e-36
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 133 DIDEC--LSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRD 190
D+DEC ++PC G C++ F+C+C GYTG CE ++++C SNPC N C D
Sbjct: 4 DVDECSLGANPCEHAGK--CINTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLD 61
Query: 191 GVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCV 236
+ +F C C PG+ G CE + C + PC ++ C+D +F C
Sbjct: 62 QIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCE 107
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 166 bits (421), Expect = 9e-50
Identities = 36/162 (22%), Positives = 49/162 (30%), Gaps = 4/162 (2%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
+ D + D C + PCQN G C D L + C C GF G
Sbjct: 16 TCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN 75
Query: 130 CEADIDE-CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGIC 188
CE + C D + C + N C C GYT PC +
Sbjct: 76 CELFTRKLCSLDNGDCDQF--CHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Query: 189 RDGVAKFTCDCPPGWT-GSRCEKDIGSCTNMPCQNDANCIDL 229
R + G S K + P +N + +D
Sbjct: 134 RRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFDLLDF 175
Score = 138 bits (350), Expect = 2e-39
Identities = 25/137 (18%), Positives = 42/137 (30%), Gaps = 4/137 (2%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDD-CASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
G C D +G ++C+C GF GK+C+ C+ + C + + +C C G+
Sbjct: 54 GKCKDGLGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113
Query: 129 QCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYT-GVMCETNIDDCKSNPCLNGGI 187
PC + + Q + G + D +P N
Sbjct: 114 DNGKACIPTGPYPCGKQTL--ERRKRSVAQATSSSGEAPDSITWKPYDAADLDPTENPFD 171
Query: 188 CRDGVAKFTCDCPPGWT 204
D T
Sbjct: 172 LLDFNQTQPERGDNNLT 188
Score = 136 bits (345), Expect = 1e-38
Identities = 30/146 (20%), Positives = 42/146 (28%), Gaps = 8/146 (5%)
Query: 94 HLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL 153
HL +C E C + D D+C + PC +G C D
Sbjct: 7 HLERECMEETCSYEEAR-----EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGK--CKDG 59
Query: 154 DNKFQCECNVGYTGVMCETNIDD-CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
++ C C G+ G CE C + C + C C G+T + K
Sbjct: 60 LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKAC 119
Query: 213 GSCTNMPCQNDANCIDLFQDFFCVSS 238
PC SS
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSS 145
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 149 bits (378), Expect = 5e-44
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 97 DDCASEPCQNGGSCVDML--DGFMCQCRPGFVGLQCEADID------------ECLSDPC 142
D C PC+NGG C+ L F C+C GF C + ++ C +PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 143 SPEGT-----DKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTC 197
GT D + C+C G+ G+ C+ NI++C+ PC NGGIC D VA ++C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSC 120
Query: 198 DCPPGWTGSRCEKDIGSCTN 217
+CP + G C+ G +
Sbjct: 121 ECPGEFMGRNCQYKGGGHHH 140
Score = 98.6 bits (246), Expect = 6e-25
Identities = 26/71 (36%), Positives = 36/71 (50%)
Query: 67 SIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFV 126
D G+ C C GF G HCQH I++C EPC+NGG C D++ + C+C F+
Sbjct: 68 ISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFM 127
Query: 127 GLQCEADIDEC 137
G C+
Sbjct: 128 GRNCQYKGGGH 138
Score = 70.9 bits (174), Expect = 5e-15
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 21/83 (25%)
Query: 175 DDCKSNPCLNGGICRDGVAK--FTCDCPPGWTGSRCEKDIGS------------CTNMPC 220
D C NPC NGGIC G+A F+C+CP G+T C + CT PC
Sbjct: 1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPC 60
Query: 221 QNDANCI-------DLFQDFFCV 236
N C D F + C
Sbjct: 61 HNGGTCEISEAYRGDTFIGYVCK 83
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 141 bits (358), Expect = 4e-41
Identities = 30/121 (24%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
+ D + D C + PCQN G C D L + C C GF G
Sbjct: 16 TCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN 75
Query: 130 CEADIDE-CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGIC 188
CE + C D + C + N C C GYT PC +
Sbjct: 76 CELFTRKLCSLDNGDCDQF--CHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133
Query: 189 R 189
R
Sbjct: 134 R 134
Score = 139 bits (353), Expect = 2e-40
Identities = 24/125 (19%), Positives = 35/125 (28%), Gaps = 3/125 (2%)
Query: 103 PCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECN 162
C + D D+C + PC +G C D ++ C C
Sbjct: 11 ECMEETCSYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGK--CKDGLGEYTCTCL 68
Query: 163 VGYTGVMCETNIDD-CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQ 221
G+ G CE C + C + C C G+T + K PC
Sbjct: 69 EGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCG 128
Query: 222 NDANC 226
Sbjct: 129 KQTLE 133
Score = 108 bits (271), Expect = 1e-28
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFT 196
L C E + + + + + D C+++PC N G C+DG+ ++T
Sbjct: 7 HLERECMEETC--SYEEAREVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYT 64
Query: 197 CDCPPGWTGSRCEKDIG-SCTNMPCQNDANCIDLFQDFFC 235
C C G+ G CE C+ D C + C
Sbjct: 65 CTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVC 104
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 130 bits (329), Expect = 8e-37
Identities = 27/127 (21%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 70 GTCTDLVGGFSCSCDL------GFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRP 123
C + F + ++ D C PC NGG C D ++ + C C+
Sbjct: 16 RECIEEKCSFEEAREVFENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQV 75
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCL 183
GF G CE D + + + D+K C C GY + + PC
Sbjct: 76 GFEGKNCELDATCNIKNGRCKQFC--KTGADSKVLCSCTTGYRLAPDQKSCKPAVPFPCG 133
Query: 184 NGGICRD 190
+
Sbjct: 134 RVSVSHS 140
Score = 126 bits (319), Expect = 2e-35
Identities = 27/130 (20%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQ 158
C E C + + D D+C +PC G C D N ++
Sbjct: 18 CIEEKCSFEEAR-----EVFENTEKTNEFWKQYVDGDQCEPNPCLNGGL--CKDDINSYE 70
Query: 159 CECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM 218
C C VG+ G CE + N +K C C G+ + +K
Sbjct: 71 CWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF 130
Query: 219 PCQNDANCID 228
PC +
Sbjct: 131 PCGRVSVSHS 140
Score = 95.1 bits (237), Expect = 1e-23
Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKF 195
EC+ + CS E + + D C+ NPCLNGG+C+D + +
Sbjct: 17 ECIEEKCSFEEAREVF-------ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSY 69
Query: 196 TCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCV 236
C C G+ G CE D C
Sbjct: 70 ECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCS 110
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 130 bits (328), Expect = 1e-36
Identities = 35/122 (28%), Positives = 44/122 (36%), Gaps = 3/122 (2%)
Query: 70 GTCTDLVGGFSCSCD-LGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
C+ D CAS PCQNGGSC D L ++C C P F G
Sbjct: 20 EQCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 79
Query: 129 QCEADIDECLSDPCSPEGTD-KCLDL-DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG 186
CE D+ L G + C D K C C+ GY+ + + PC
Sbjct: 80 NCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPCGKIP 139
Query: 187 IC 188
I
Sbjct: 140 IL 141
Score = 120 bits (304), Expect = 3e-33
Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 13/133 (9%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRP-GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKF 157
C E C + + + + +D D+C S PC G+ C D +
Sbjct: 17 CKEEQCSFEEAR------EIFKDAERTKLFWISYSDGDQCASSPCQNGGS--CKDQLQSY 68
Query: 158 QCECNVGYTGVMCETNIDDCKSNPCLNGG---ICRDGV-AKFTCDCPPGWTGSRCEKDIG 213
C C + G CET+ DD NGG C D K +C C G++
Sbjct: 69 ICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCT 128
Query: 214 SCTNMPCQNDANC 226
PC
Sbjct: 129 PTVEYPCGKIPIL 141
Score = 93.9 bits (234), Expect = 3e-23
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%)
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
EC + CS E + + + ++ D C S+PC NGG C+D +
Sbjct: 16 ECKEEQCSFEEA--------REIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQS 67
Query: 195 FTCDCPPGWTGSRCEKDIGSCTNMPCQN---DANCIDLFQDFF 234
+ C C P + G CE +N + C D
Sbjct: 68 YICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKR 110
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 127 bits (321), Expect = 1e-33
Identities = 46/153 (30%), Positives = 59/153 (38%), Gaps = 23/153 (15%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
G C V C C GF G +C S C NGG+C C C PG G Q
Sbjct: 191 GLC---VTPGFCICPPGFYGVNCDK---ANCSTTCFNGGTCFY---PGKCICPPGLEGEQ 241
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICR 189
CE I +C PC G C+ K +C+C+ GY G +C + + C G C
Sbjct: 242 CE--ISKC-PQPCRNGGK--CI---GKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTCH 290
Query: 190 DGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQN 222
+ C C GW G C K + +
Sbjct: 291 EP---NKCQCQEGWHGRHCNKRYEASLIGTKHH 320
Score = 122 bits (308), Expect = 6e-32
Identities = 50/162 (30%), Positives = 61/162 (37%), Gaps = 26/162 (16%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
G C + C C GF G HC+ + C NGG CV C C PGF G+
Sbjct: 159 GFCNE---RRICECPDGFHGPHCEK---ALCTPRCMNGGLCVT---PGFCICPPGFYGVN 209
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICR 189
C+ S C GT C +C C G G CE I C PC NGG C
Sbjct: 210 CDKA---NCSTTCFNGGT--CF---YPGKCICPPGLEGEQCE--ISKC-PQPCRNGGKC- 257
Query: 190 DGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ 231
+ K C C G+ G C K + C C + +
Sbjct: 258 --IGKSKCKCSKGYQGDLCSKPVCEP---GCGAHGTCHEPNK 294
Score = 120 bits (303), Expect = 3e-31
Identities = 43/163 (26%), Positives = 55/163 (33%), Gaps = 23/163 (14%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
+ K CQ C+NGG C + +C+C GF G
Sbjct: 123 VIVMNSEGNTILKTPQNAIFFKTCQQ---AECPGGCRNGGFCN---ERRICECPDGFHGP 176
Query: 129 QCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGIC 188
CE + C G C+ C C G+ GV C+ S C NGG C
Sbjct: 177 HCEKA---LCTPRCMNGGL--CV---TPGFCICPPGFYGVNCDK---ANCSTTCFNGGTC 225
Query: 189 RDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ 231
C CPPG G +CE PC+N CI +
Sbjct: 226 ---FYPGKCICPPGLEGEQCEISKCPQ---PCRNGGKCIGKSK 262
Score = 98.0 bits (244), Expect = 5e-23
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
GTC C C G G+ C+ I C +PC+NGG C+ C+C G+ G
Sbjct: 223 GTC---FYPGKCICPPGLEGEQCE--ISKC-PQPCRNGGKCIG---KSKCKCSKGYQGDL 273
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG 186
C + E C GT C + +C+C G+ G C + +
Sbjct: 274 CSKPVCEP---GCGAHGT--CHE---PNKCQCQEGWHGRHCNKRYEASLIGTKHHHH 322
Score = 73.3 bits (180), Expect = 1e-14
Identities = 24/123 (19%), Positives = 31/123 (25%), Gaps = 12/123 (9%)
Query: 109 SCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGV 168
V +L + VG C D N
Sbjct: 88 VNVPLLGTVPHKASVVQVGFPCLGKQDGV---AAFEVDVIVMNSEGNTILKTPQNAIFFK 144
Query: 169 MCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCID 228
C+ C NGG C + C+CP G+ G CEK C N C+
Sbjct: 145 TCQQAEC---PGGCRNGGFCNER---RICECPDGFHGPHCEKA---LCTPRCMNGGLCVT 195
Query: 229 LFQ 231
Sbjct: 196 PGF 198
Score = 51.0 bits (122), Expect = 2e-07
Identities = 11/97 (11%), Positives = 21/97 (21%), Gaps = 4/97 (4%)
Query: 135 DECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
D + L + +V G C D + + +
Sbjct: 74 SLRSLDKGIMADPTVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEV-DVIVMNSEGNT 132
Query: 195 FTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ 231
C++ C C+N C +
Sbjct: 133 ILKTPQNAIFFKTCQQAE--CPG-GCRNGGFCNERRI 166
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 121 bits (305), Expect = 4e-33
Identities = 40/161 (24%), Positives = 58/161 (36%), Gaps = 20/161 (12%)
Query: 75 LVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADI 134
+ G + +CD + G C C G D C G++G +C I
Sbjct: 13 IEGRSAVTCDDYYYGFGCN---KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECNRAI 67
Query: 135 DECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
C G+ C C C G+ G+ C D C +P GIC +
Sbjct: 68 --CRQGCSPKHGS--CKL---PGDCRCQYGWQGLYC----DKCIPHPGCVHGICNEP--- 113
Query: 195 FTCDCPPGWTGSRCEKDIGSCT-NMPCQNDANCIDLFQDFF 234
+ C C W G C+KD+ C + PC N C + D +
Sbjct: 114 WQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKY 154
Score = 118 bits (298), Expect = 4e-32
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 18/150 (12%)
Query: 62 DTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC 121
+D D G + +C G+ G C C GSC C+C
Sbjct: 35 RPRDDFFGHYACDQNG--NKTCMEGWMGPECN--RAICRQGCSPKHGSCKL---PGDCRC 87
Query: 122 RPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN- 180
+ G+ GL C D+C+ P G C + +QC C + G +C+ +++ C ++
Sbjct: 88 QYGWQGLYC----DKCIPHPGCVHGI--C---NEPWQCLCETNWGGQLCDKDLNYCGTHQ 138
Query: 181 PCLNGGICRD-GVAKFTCDCPPGWTGSRCE 209
PCLNGG C + G K+ C CP G++G CE
Sbjct: 139 PCLNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 95.5 bits (238), Expect = 2e-23
Identities = 27/133 (20%), Positives = 35/133 (26%), Gaps = 19/133 (14%)
Query: 99 CASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQ 158
S + GS C + G C C D
Sbjct: 2 RGSHHHHHHGSIE---GRSAVTCDDYYYGFGCN---KFCRPRDDFFGHY----ACDQNGN 51
Query: 159 CECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM 218
C G+ G C I C+ G C+ C C GW G C+K C
Sbjct: 52 KTCMEGWMGPECNRAI--CRQGCSPKHGSCKLP---GDCRCQYGWQGLYCDK----CIPH 102
Query: 219 PCQNDANCIDLFQ 231
P C + +Q
Sbjct: 103 PGCVHGICNEPWQ 115
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 97.1 bits (242), Expect = 1e-24
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 89 GKHCQHL-IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADID--ECLSDPCSPE 145
G C L ++ + C G+C+D + F C CR G+ G C+ ++ C D
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT 65
Query: 146 GTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRD 190
CL+ +C C GY PC +
Sbjct: 66 HY--CLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 93.2 bits (232), Expect = 3e-23
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 5/105 (4%)
Query: 127 GLQCEA-DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID--DCKSNPCL 183
G QC ++ + C GT C+D F C+C G+ G C+ + +C +
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGT--CIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGG 63
Query: 184 NGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCID 228
C + V C C PG+ PC ++
Sbjct: 64 CTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
Score = 87.5 bits (217), Expect = 3e-21
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLID--DCASEPCQNGGSCVDMLDGFMCQCRPGFVG 127
GTC D +G FSC C G+ G+ CQ + +C+ + C++ + C C PG+
Sbjct: 26 GTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKL 85
Query: 128 LQCEADIDECLSDPC 142
+ PC
Sbjct: 86 GDDLLQCHPAVKFPC 100
Score = 69.4 bits (170), Expect = 9e-15
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 162 NVGYTGVMCETN-IDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIG--SCTNM 218
+ G C ++ ++ C G C DG+ F+CDC GW G C++++ +C+
Sbjct: 1 SKHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLD 60
Query: 219 PCQNDANCIDLFQDFFC 235
C++ C
Sbjct: 61 NGGCTHYCLEEVGWRRC 77
Score = 54.3 bits (131), Expect = 2e-09
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVD 112
C + VG CSC G+ PC ++
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKFPCGRPWKRME 108
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 94.7 bits (236), Expect = 2e-23
Identities = 31/150 (20%), Positives = 43/150 (28%), Gaps = 8/150 (5%)
Query: 63 TPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCR 122
P I G C + G + C C F + D S C C
Sbjct: 8 DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNE 67
Query: 123 PGFV--GLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETN---IDDC 177
G C + + PC + K C G+ ID+C
Sbjct: 68 IGVGVSKASCCCSLGKAWGTPCEMCPA--VNTSEYKILCPGGEGFRPNPITVILEDIDEC 125
Query: 178 KSNP-CLNGGICRDGVAKFTCDCPPGWTGS 206
+ P GG C + F C CP G+ +
Sbjct: 126 QELPGLCQGGKCINTFGSFQCRCPTGYYLN 155
Score = 77.4 bits (191), Expect = 3e-17
Identities = 23/142 (16%), Positives = 40/142 (28%), Gaps = 20/142 (14%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEA---DIDECLSDPCSPEGTDKCLD 152
+++C G+CV+ ++C C P F D C +
Sbjct: 3 VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG---NCYLDIR--PRG 57
Query: 153 LDNKFQCECNVGY--TGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSR--- 207
+ C +G + C ++ PC K C G+ +
Sbjct: 58 DNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITV 117
Query: 208 -------CEKDIGSCTNMPCQN 222
C++ G C C N
Sbjct: 118 ILEDIDECQELPGLCQGGKCIN 139
Score = 69.7 bits (171), Expect = 2e-14
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGV 192
D++ECL G C++ + C+C + D +S C R
Sbjct: 2 DVNECLDPTTCISGN--CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 193 AKFTCDCPPGWTGSR--CEKDIGSCTNMPCQNDANCIDLFQDFFC 235
C G S+ C +G PC+ C
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILC 104
Score = 39.3 bits (92), Expect = 6e-04
Identities = 13/64 (20%), Positives = 22/64 (34%)
Query: 172 TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQ 231
T++++C G C + + CDCPP + + + C D
Sbjct: 1 TDVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNG 60
Query: 232 DFFC 235
D C
Sbjct: 61 DTAC 64
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer,
pentraxin fold, cyclic heptamer, invertebrate lectin,
sugar binding protein; 2.30A {Limulus polyphemus} PDB:
3flr_A 3flt_A
Length = 217
Score = 90.5 bits (224), Expect = 3e-21
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 274 ATINDGQWHHVAIVWTQ--GTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIK 331
I GQW+HV VW+ G + + G G +EN G G + G VV+G+ +
Sbjct: 92 IEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKGHQISAGGTVVIGQEQDKIGG 151
Query: 332 AY-TEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTWTGYD-DINGGV 389
+ + + G+L+ +Q+W+ AL T+++ P G V++W + GV
Sbjct: 152 GFEEQESWSGELSDLQVWDEALT-THQVSTVASCNGIRP---RGNVISWMEDSFVADDGV 207
Query: 390 ERVVPSHCS 398
+ CS
Sbjct: 208 IVGISHMCS 216
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 90.7 bits (224), Expect = 1e-19
Identities = 43/260 (16%), Positives = 77/260 (29%), Gaps = 37/260 (14%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCK 178
+ R F G + + L+ P + G ++ +
Sbjct: 144 VREREPFKGWIRDVRVQSSLALPVDSGEVK---------LDDEPPNSGGGSPCEAGEEGE 194
Query: 179 SNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCVS 237
CLNGG+C + CDC G+ G C + ++ C DL Q+ S
Sbjct: 195 GGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSS 254
Query: 238 SHSVQGR-RP------LIQAHSSGVQVSLFPELQDAFLAFH--------------EYATI 276
S + + ++ S V+L L++ ++
Sbjct: 255 SDEITLSFKTLQRNGLMLHTGKSADYVNL--ALKNGAVSLVINLGSGAFEALVEPVNGKF 312
Query: 277 NDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEA 336
ND WH V + +T+ +G++ L + +G P
Sbjct: 313 NDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGG-SPSTADLPGSP 371
Query: 337 ---GFEGKLTKVQIWNRALD 353
F G L +V N +
Sbjct: 372 VSNNFMGCLKEVVYKNNDVR 391
Score = 71.8 bits (175), Expect = 1e-13
Identities = 48/244 (19%), Positives = 74/244 (30%), Gaps = 33/244 (13%)
Query: 122 RPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNP 181
G+VG C+ D + D+ + + G C SNP
Sbjct: 579 NYGYVG---------CIRDLFI---DGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNP 626
Query: 182 CLNGGICRDGVAKFTCDCPP-GWTGSRCEKDI-----GSCTNMPCQNDANCIDLFQDFFC 235
C N G+CRDG ++ CDC G+ G CE++ M Q +D
Sbjct: 627 CKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSL 686
Query: 236 -VSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFH-----------EYATINDGQWHH 283
S G + S + L EL + +ND +WH
Sbjct: 687 RFRSQRAYGILMATTSRDSADTLRL--ELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHT 744
Query: 284 VAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEAGFEGKLT 343
V +V +L L + A + G L + + + F G L
Sbjct: 745 VRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPS-NFIGHLQ 803
Query: 344 KVQI 347
+
Sbjct: 804 SLTF 807
Score = 66.4 bits (161), Expect = 7e-12
Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 30/226 (13%)
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQN 222
G CE C+ + C N G+C F+CDC ++G C +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 1066
Query: 223 DANCIDLFQDFFCVSSHSV-------QGRRPLIQAHSSGVQVS-LFPELQDAFLAFH--- 271
D + + Q L++ SS L + +
Sbjct: 1067 QITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 1126
Query: 272 ---------EYATINDGQWHHVAIVWTQGTLTL-ITEGLIAGKVENYGSGKSLPQYGWVV 321
A INDG++H V + G TL + + + ++
Sbjct: 1127 GTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATII 1186
Query: 322 LGKPRPDNIKAYTEAGFEGKLTKVQIWNRA-LDFTNEIQKQVRDCR 366
+G F+G+L+ + L+ E +
Sbjct: 1187 IGGKEQGQ-------PFQGQLSGLYYNGLKVLNMAAENDANIAIVG 1225
Score = 62.2 bits (150), Expect = 2e-10
Identities = 46/347 (13%), Positives = 82/347 (23%), Gaps = 66/347 (19%)
Query: 115 DGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQ---CECNVGYTGVMCE 171
D + Q +D L+ + L D+ F G
Sbjct: 314 DNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVS 373
Query: 172 TNIDDCKSNPCLNGG-----ICRDGVAKFTCDCPPGWTGSRCEKDI----------GSCT 216
N C + R G +CE S
Sbjct: 374 NNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFI 433
Query: 217 NMPCQNDANCIDLFQDF---------FCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAF 267
++P N + DF + ++ E+ D
Sbjct: 434 SLPKWNAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAI--EMLDGH 491
Query: 268 LAFH------------EYATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLP 315
L +NDG+W+HV + T+ L G + L
Sbjct: 492 LYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRT-PYTAPGESEILD 550
Query: 316 QYGWVVLG---------KPRPDNIKAYTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCR 366
+ LG + A G+ G + + I ++ D + Q
Sbjct: 551 LDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQST--- 607
Query: 367 TEPVLHTGLVLTWTGYDDINGGVERVVPSHCS-QHICPPGYTGPECD 412
G+ + + + + + C +C G+ CD
Sbjct: 608 ------AGVKPSCSRETA-----KPCLSNPCKNNGMCRDGWNRYVCD 643
Score = 56.4 bits (135), Expect = 1e-08
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 59 VINDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM 118
+ + + L G ++ C NGG C + D +
Sbjct: 158 RVQSSLALPVDSGEVKL-----DDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 119 CQCR-PGFVGLQCEADIDECLSDPC 142
C C GF G C +E ++
Sbjct: 213 CDCSRTGFRGKDCSQGKEEYIATFK 237
Score = 54.5 bits (130), Expect = 5e-08
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 26/126 (20%)
Query: 134 IDECLSDPCSPEGTDKCLDLDNKFQ-------------------CECNVGYTGVMCETNI 174
ID+ + + + + + + + G + + +
Sbjct: 100 IDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRV 159
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFF 234
+ P +G + D PP G + C N C +
Sbjct: 160 QSSLALPVDSGEVK-------LDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAV 212
Query: 235 CVSSHS 240
C S +
Sbjct: 213 CDCSRT 218
Score = 50.6 bits (120), Expect = 7e-07
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRP-GFVGL 128
G D+ G + C S PC+N G C D + ++C C G++G
Sbjct: 593 GQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGR 652
Query: 129 QCEADIDECLSDPCS 143
CE + D
Sbjct: 653 SCEREATVLSYDGSM 667
Score = 48.7 bits (115), Expect = 3e-06
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 86 GFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCR-PGFVGLQCEADIDECLSDPC 142
G + C+ C + C N G C+ DGF C C F G C +
Sbjct: 1007 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKG 1064
Score = 40.6 bits (94), Expect = 0.001
Identities = 42/314 (13%), Positives = 76/314 (24%), Gaps = 51/314 (16%)
Query: 134 IDECLSDPCSPEGTDKCLDLDNKFQC---------ECNVGYTGVMCETNIDDCKSNPCLN 184
+D+ + G L+ N + G + +
Sbjct: 758 VDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNGMAYIDLCK 817
Query: 185 GGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCVSSHSV--- 241
G K S + + LF F S +
Sbjct: 818 NGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAYTSMHLFFQFKTTSLDGLILY 877
Query: 242 -QGRRP---LIQAHSSGVQVSLFPELQDAFLAFHEYATINDGQWHHVAIVWTQGTLTLI- 296
G +++ + + +ND QWH+V I L +
Sbjct: 878 NSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVK 937
Query: 297 ----TEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEAGFEGKLTKVQIWNRAL 352
I N L G V + + + GF+G L V + R
Sbjct: 938 IDTKITTQITAGARNLDLKSDL-YIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLP 996
Query: 353 DFTNEIQKQVRD-----------CRTEPVLHTGL-VLTWTGYDDINGGVERVVPSHCSQH 400
D ++ C+ + + G+ + W G+ C
Sbjct: 997 DLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGF-------------SCD-- 1041
Query: 401 ICP-PGYTGPECDQ 413
C ++GP C+
Sbjct: 1042 -CSMTSFSGPLCND 1054
Score = 40.6 bits (94), Expect = 0.001
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 11/152 (7%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG---------KP 325
+NDG WH+V I TL + + A VE + + + + +G
Sbjct: 78 PVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAAL 137
Query: 326 RPDNIKAYTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTWTGYDDI 385
+ F+G + V++ + + + ++ D + G +
Sbjct: 138 KLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGGV 197
Query: 386 --NGGVERVVPSHCSQHICPPGYTGPECDQLT 415
NGGV VV G+ G +C Q
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGK 229
Score = 31.7 bits (71), Expect = 0.60
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 70 GTCTDLVGGFSCSCDL-GFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
G C GFSC C + F+G C G R + +
Sbjct: 1029 GVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGG-GQITYKWPPNDRPSTRADRLAI 1087
Query: 129 Q 129
Sbjct: 1088 G 1088
Score = 28.3 bits (62), Expect = 5.9
Identities = 11/90 (12%), Positives = 23/90 (25%), Gaps = 11/90 (12%)
Query: 88 TGKHCQHLIDDCASEPCQNGGSCVDM-----------LDGFMCQCRPGFVGLQCEADIDE 136
GK + +DD + Q G + ++ F+G +
Sbjct: 750 RGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLTFNG 809
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYT 166
G +L+ +F +
Sbjct: 810 MAYIDLCKNGDIDYCELNARFGFRNIIADP 839
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 89.4 bits (221), Expect = 1e-19
Identities = 36/177 (20%), Positives = 51/177 (28%), Gaps = 25/177 (14%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCA-----SEPCQNGGSCVDML----DGFMCQ 120
G C + G C C GF G+ C+ + E C C + D + C
Sbjct: 209 GVCHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS 266
Query: 121 CRPGFVGLQCEADIDECLSDP-------CSPEGTDKCLDLDNKFQCECNVGYTGVMCET- 172
C G+ GLQC P C+ D C C+ G+ G+ CE
Sbjct: 267 CATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMC-----DRFQGCLCSPGWQGLQCERE 321
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQNDANCID 228
I KF C GW E+ + + +
Sbjct: 322 GIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEMTLVKPDGTVLHPKDFNH 378
Score = 78.2 bits (192), Expect = 7e-16
Identities = 33/178 (18%), Positives = 46/178 (25%), Gaps = 28/178 (15%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVD--MLDGFMCQCRPGFV 126
G+ V L H Q D GG+ + +C
Sbjct: 136 NGSFIHSVPRHEVPDILEVHLPHAQPQ-DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKW 194
Query: 127 GLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCK-----SNP 181
G +C L C G C + +C C G+ G CE +
Sbjct: 195 GPEC-----NHLCTACMNNGV--CHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKER 245
Query: 182 CLNGGICRDGVAK----FTCDCPPGWTGSRCEKDIGSCT-------NMPCQNDANCID 228
C C+ V + C C GW G +C + C N C
Sbjct: 246 CSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR 303
Score = 75.1 bits (184), Expect = 6e-15
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 77 GGFSCSCDLGFTGKHCQHLIDDCA-------SEPCQNGGSCVDMLDGFMCQCRPGFVGLQ 129
+ CSC G+ G C C NG C C C PG+ GLQ
Sbjct: 261 DPYGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDR---FQGCLCSPGWQGLQ 317
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNV-GYTGVMCETNIDDCKSNPCLNGGIC 188
CE + ++ P + D KF C G+ E K + +
Sbjct: 318 CEREGIPRMT-PKIVDLPDHIEVNSGKFNPICKASGWPLPTNEEM-TLVKPDGTVLHPKD 375
Query: 189 RDGVAKFTCDCPPGWTGSRCEKDIGSCT 216
+ F+ + + C+
Sbjct: 376 FNHTDHFSVAIFTIHRILPPDSGVWVCS 403
Score = 61.3 bits (148), Expect = 2e-10
Identities = 23/130 (17%), Positives = 31/130 (23%), Gaps = 13/130 (10%)
Query: 104 CQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNV 163
GS + + + D + G C
Sbjct: 133 IYKNGSFIHSVPRHEVPDILEVHLPHAQPQ-DAGVYSARYIGGNLFTSAFTRLIVRRCEA 191
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI-----GSCTNM 218
G C C+N G+C + C CPPG+ G CEK G
Sbjct: 192 QKWGPECN-----HLCTACMNNGVCHEDT--GECICPPGFMGRTCEKACELHTFGRTCKE 244
Query: 219 PCQNDANCID 228
C C
Sbjct: 245 RCSGQEGCKS 254
Score = 49.3 bits (117), Expect = 1e-06
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 8/113 (7%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQH-LIDDCASEPCQNGGSCVDMLDGFMCQCR-PGFVG 127
C G C C G+ G C+ I + F C+ G+
Sbjct: 299 EMCDRFQG---CLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPL 355
Query: 128 LQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN 180
E + L P K + + F + + ++ + C N
Sbjct: 356 PTNE---EMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVN 405
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 83.6 bits (207), Expect = 2e-19
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGF--VG 127
G C + G F C C T + + + C C+ +
Sbjct: 15 GVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID------GRCEININGATLK 68
Query: 128 LQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCET--NIDDCKSNPCL-N 184
QC + + PC+ C GY+ + +ID+C+ P +
Sbjct: 69 SQCCSSLGAAWGSPCTLCQ----------VDPICGKGYSRIKGTQCEDIDECEVFPGVCK 118
Query: 185 GGICRDGVAKFTCDCPPGWTGS 206
G+C + F C CP G T
Sbjct: 119 NGLCVNTRGSFKCQCPSGMTLD 140
Score = 70.5 bits (173), Expect = 8e-15
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 24/147 (16%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDN 155
ID+C S PC NG C + F+C+C + E + C D
Sbjct: 4 IDECESSPCING-VCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID------- 55
Query: 156 KFQCECNVGY--TGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT---GSRCEK 210
+CE N+ C +++ +PC C G++ G++CE
Sbjct: 56 -GRCEININGATLKSQCCSSLGAAWGSPCTLCQ--------VDPICGKGYSRIKGTQCE- 105
Query: 211 DIGSCTNMPCQ-NDANCIDLFQDFFCV 236
DI C P + C++ F C
Sbjct: 106 DIDECEVFPGVCKNGLCVNTRGSFKCQ 132
Score = 65.4 bits (160), Expect = 4e-13
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDG 191
ADIDEC S PC C + F CEC+ T +T + C I
Sbjct: 2 ADIDECESSPC---INGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVID--- 55
Query: 192 VAKFTCDCPPGWTGSRCEKDIGSCTNMPCQN 222
+ + S+C +G+ PC
Sbjct: 56 -GRCEININGATLKSQCCSSLGAAWGSPCTL 85
Score = 63.9 bits (156), Expect = 1e-12
Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 15/108 (13%)
Query: 65 NDSIPGTCTDLVGGFSCSCDLGF--TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCR 122
++I GTC V C ++ C + PC C
Sbjct: 42 IETIKGTCWQTVIDGRCEININGATLKSQCCSSLGAAWGSPCTLC--------QVDPICG 93
Query: 123 PGFV---GLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTG 167
G+ G QCE DIDEC P + C++ F+C+C G T
Sbjct: 94 KGYSRIKGTQCE-DIDECEVFPGVCKNG-LCVNTRGSFKCQCPSGMTL 139
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 80.5 bits (199), Expect = 5e-17
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNK 156
C S+PC + GSC D + G+ C C PG+ G CE +EC + CL
Sbjct: 6 SPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDG-CQHFCLPGQES 64
Query: 157 FQCECNVGYTGVMCETNIDDCKSNPC 182
+ C C GY C
Sbjct: 65 YTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 70.9 bits (174), Expect = 7e-14
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 3/89 (3%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG-ICRDG 191
C+S PC G+ C D + C C+ GY G CE ++C C G
Sbjct: 4 GGSPCISQPCLHNGS--CQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPG 61
Query: 192 VAKFTCDCPPGWTGSRCEKDIGSCTNMPC 220
+TC C G+ K C
Sbjct: 62 QESYTCSCAQGYRLGEDHKQCVPHDQCAC 90
Score = 68.2 bits (167), Expect = 6e-13
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 172 TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC---TNMPCQNDANCID 228
C S PCL+ G C+D + +TC C PG+ GS CE C CQ+ C+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHF--CLP 60
Query: 229 LFQDFFC 235
+ + C
Sbjct: 61 GQESYTC 67
Score = 60.9 bits (148), Expect = 2e-10
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGS-CVDMLDGFMCQCRPGFVGL 128
G+C D + G++C+C G+ G +C+ ++C E C+ + + C C G+
Sbjct: 17 GSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLG 76
Query: 129 QCEADIDECLSDPCSP 144
+ C
Sbjct: 77 EDHKQCVPHDQCACGV 92
Score = 30.4 bits (69), Expect = 0.94
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 210 KDIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
K C + PC ++ +C D + C S +G
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGS 37
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 81.0 bits (199), Expect = 7e-17
Identities = 29/139 (20%), Positives = 41/139 (29%), Gaps = 16/139 (11%)
Query: 91 HCQHLIDDCASEPCQNGGS-CVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDK 149
+ I C + CV C+C G C P SP
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGS--- 342
Query: 150 CLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
L + C + + ++ C NGG C + V C CP +TG CE
Sbjct: 343 YLPIPKGAANACIPSISSIGTNVCDNEL--LHCQNGGTCHNNV---RCLCPAAYTGILCE 397
Query: 210 KDIGSCTNMPCQNDANCID 228
K C+ +C
Sbjct: 398 K----L---RCEEAGSCGS 409
Score = 76.8 bits (188), Expect = 2e-15
Identities = 31/152 (20%), Positives = 43/152 (28%), Gaps = 17/152 (11%)
Query: 57 FPVINDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDG 116
V + C +C C+ TG C + P GS + + G
Sbjct: 291 IKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWS-PGSYLPIPKG 349
Query: 117 FMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDD 176
C P + +E L C GT N +C C YTG++CE
Sbjct: 350 AANACIPSISSIGTNVCDNELL--HCQNGGT-----CHNNVRCLCPAAYTGILCEK---- 398
Query: 177 CKSNPCLNGGICRDGVAKFTCDCPPGWTGSRC 208
+ C G C P G
Sbjct: 399 LR---CEEAGSCGSDSG--QGAPPHGTHHHHH 425
Score = 66.4 bits (161), Expect = 4e-12
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 130 CEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICR 189
+DI C+ T C+ ++K CEC TG C + + P + G
Sbjct: 287 AISDIKVRGRCKCNLHAT-VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPW-SPGSYL 344
Query: 190 DGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQD 232
C P + CQN C + +
Sbjct: 345 PIPKGAANACIPSISSIGTNVCDNELL--HCQNGGTCHNNVRC 385
Score = 41.8 bits (97), Expect = 3e-04
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 170 CETNIDDCKSNPCLN-GGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCID 228
++I C +C +K TC+C TG C K + P + +
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSP-GSYLP 345
Query: 229 LFQDFFC 235
+ +
Sbjct: 346 IPKGAAN 352
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 80.1 bits (197), Expect = 2e-16
Identities = 31/164 (18%), Positives = 47/164 (28%), Gaps = 26/164 (15%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLID-----DCASEPCQNGGSCVDMLDGFMCQCRP 123
PG G C C GF G CQ + C G C +C+C
Sbjct: 530 PGRGLCFCG--KCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NVCECHS 583
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETN-IDDCKSNPC 182
G+ C+ PC + C + + G G C SN
Sbjct: 584 GYQLPLCQ--ECPGCPSPCGKYIS--CAEC-----LKFEKGPFGKNCSAACPGLQLSNNP 634
Query: 183 LNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
+ G C++ + + C +T + D + C
Sbjct: 635 VKGRTCKE---RDSEGCWVAYTLEQQ--DGMDRYLIYVDESREC 673
Score = 74.0 bits (181), Expect = 3e-14
Identities = 38/173 (21%), Positives = 54/173 (31%), Gaps = 37/173 (21%)
Query: 81 CSCDLGFTGKHCQHLID-------------DCASEPCQNGGSCVDMLDGFMCQCRPG--- 124
C CD G+ GK+C+ D S C G CV C C
Sbjct: 448 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC----GQCLCHTSDVP 503
Query: 125 ---FVGLQCEADIDECLSDPCSP-EGTDKCLDLDNKFQCECNVGYTGVMCETNID----- 175
G CE D C G + L +C C+ G+ G C+
Sbjct: 504 GKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCERTTEGCL 561
Query: 176 DCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCID 228
+ + C G CR C+C G+ C++ PC +C +
Sbjct: 562 NPRRVECSGRGRCRCN----VCECHSGYQLPLCQE--CPGCPSPCGKYISCAE 608
Score = 69.4 bits (169), Expect = 7e-13
Identities = 31/192 (16%), Positives = 49/192 (25%), Gaps = 31/192 (16%)
Query: 60 INDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMC 119
+ T +G C+ C G +C
Sbjct: 393 VTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLEC----GIC 448
Query: 120 QCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLD-------NKFQCECNVG------YT 166
+C G++G CE S + QC C+
Sbjct: 449 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIY 508
Query: 167 GVMCETNIDDC-----KSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCT----- 216
G CE + +C + G+C G C C PG+ GS C+ + +
Sbjct: 509 GQYCECDTINCERYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQCERTTEGCLNPR 564
Query: 217 NMPCQNDANCID 228
+ C C
Sbjct: 565 RVECSGRGRCRC 576
Score = 61.7 bits (149), Expect = 2e-10
Identities = 31/169 (18%), Positives = 40/169 (23%), Gaps = 32/169 (18%)
Query: 81 CSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSD 140
CD + A+E Q + L +C
Sbjct: 376 GDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRS 435
Query: 141 PCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID-------------DCKSNPCLNGGI 187
C +G +C C C+ GY G CE D S C G
Sbjct: 436 LCHGKGFLEC------GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGD 489
Query: 188 CRDGVAKFTCDCPPGWT------GSRCEKDIGSC---TNMPCQNDANCI 227
C G C C G CE D +C C +
Sbjct: 490 CVCG----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGL 534
Score = 28.5 bits (63), Expect = 4.8
Identities = 5/70 (7%), Positives = 10/70 (14%)
Query: 159 CECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM 218
+C+ V + + + C S
Sbjct: 376 GDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRS 435
Query: 219 PCQNDANCID 228
C
Sbjct: 436 LCHGKGFLEC 445
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 72.1 bits (177), Expect = 5e-16
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 157 FQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVA--KFTCDCPPGWTGSRCEKDI 212
C CN G + C C NGG C+ + F C CP G+ G CE D
Sbjct: 32 EYCWCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT 88
Score = 67.9 bits (166), Expect = 1e-14
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 64 PNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDML--DGFMCQC 121
+ S C C+ G H + C+ C NGG+C L F+CQC
Sbjct: 17 QHQSWLRPVLRSNRVEYCWCNSGRAQCHSVP-VKSCSEPRCFNGGTCQQALYFSDFVCQC 75
Query: 122 RPGFVGLQCEADIDE 136
GF G CE D
Sbjct: 76 PEGFAGKSCEIDTRA 90
Score = 45.9 bits (109), Expect = 8e-07
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 157 FQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCT 216
+Q C T ++ + + P L C C G + SC+
Sbjct: 2 YQVICRDEKTQMIYQQH--QSWLRPVLRSN------RVEYCWCNSGRAQC-HSVPVKSCS 52
Query: 217 NMPCQNDANCIDL--FQDFFC 235
C N C F DF C
Sbjct: 53 EPRCFNGGTCQQALYFSDFVC 73
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo
sapiens} PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A
Length = 206
Score = 74.0 bits (181), Expect = 2e-15
Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
Query: 274 ATINDGQWHHVAIVWTQ--GTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIK 331
H+ W G + +G + ++ G ++ ++LG+ +
Sbjct: 86 VPEVTVAPVHICTSWESASGIVEFWVDGKPRVR-KSLKKGYTVGAEASIILGQEQDSFGG 144
Query: 332 AYTEA-GFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTWTGYD-DINGGV 389
+ + G + V +W+ L +EI + VL W ++ G V
Sbjct: 145 NFEGSQSLVGDIGNVNMWDFVLS-PDEINTIYLGGP-----FSPNVLNWRALKYEVQGEV 198
Query: 390 E 390
Sbjct: 199 F 199
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin,
metal-binding secreted; HET: NAG; 1.50A {Homo sapiens}
PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A*
3d5o_A* 2w08_A*
Length = 204
Score = 73.5 bits (180), Expect = 2e-15
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 273 YATINDGQWHHVAIVWT--QGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNI 330
H+ + W G G K + G + +VLG+ +
Sbjct: 83 KVIEKFPAPVHICVSWESSSGIAEFWINGTPLVK-KGLRQGYFVEAQPKIVLGQEQDSYG 141
Query: 331 KAYTEA-GFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTWTGYD-DINGG 388
+ + F G++ + +W+ L I + +L W + +I G
Sbjct: 142 GKFDRSQSFVGEIGDLYMWDSVL-PPENILSAYQGTPLP-----ANILDWQALNYEIRGY 195
Query: 389 VE 390
V
Sbjct: 196 VI 197
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 68.3 bits (168), Expect = 3e-15
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCE 209
+ D C+SNPCLNGG C+D + + C CP G+ G CE
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 61.0 bits (149), Expect = 1e-12
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
D C S PC NGGSC D ++ + C C GF G CE
Sbjct: 3 GDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38
Score = 47.9 bits (115), Expect = 4e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
D D+C S+PC G+ C D N ++C C G+ G CE
Sbjct: 2 DGDQCESNPCLNGGS--CKDDINSYECWCPFGFEGKNCE 38
Score = 41.7 bits (99), Expect = 7e-06
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQ 93
G+C D + + C C GF GK+C+
Sbjct: 15 GSCKDDINSYECWCPFGFEGKNCE 38
Score = 29.0 bits (66), Expect = 0.21
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 211 DIGSCTNMPCQNDANCIDLFQDFFCV 236
D C + PC N +C D + C
Sbjct: 2 DGDQCESNPCLNGGSCKDDINSYECW 27
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 73.5 bits (180), Expect = 2e-14
Identities = 35/225 (15%), Positives = 63/225 (28%), Gaps = 30/225 (13%)
Query: 164 GYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCP-PGWTGSRCEKDIGSCTNMPCQN 222
G CE C+ + C N G+C F+CDC ++G C +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Query: 223 DANCIDLFQDFFCVSSHSV-------QGRRPLIQAHSSGVQVSLFP-ELQDAFLAFH--- 271
D + + Q L++ SS + +
Sbjct: 235 QITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNV 294
Query: 272 ---------EYATINDGQWHHVAIVWTQGTLTL-ITEGLIAGKVENYGSGKSLPQYGWVV 321
A INDG++H V + G TL + + + ++
Sbjct: 295 GTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATII 354
Query: 322 LGKPRPDNIKAYTEAGFEGKLTKVQIWNRA-LDFTNEIQKQVRDC 365
+G F+G+L+ + L+ E +
Sbjct: 355 IGGKEQGQ-------PFQGQLSGLYYNGLKVLNMAAENDANIAIV 392
Score = 51.5 bits (123), Expect = 3e-07
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 86 GFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCR-PGFVGLQCEADIDECLSDPCSP 144
G + C+ C + C N G C+ DGF C C F G C +
Sbjct: 175 GQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGG 234
Query: 145 EGTDKCLDLDNKFQ 158
+ T K D
Sbjct: 235 QITYKWPPNDRPST 248
Score = 40.4 bits (94), Expect = 9e-04
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 37/158 (23%)
Query: 275 TINDGQWHHVAIVWTQGTLTLIT-EGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAY 333
+ND QWH+V I L + + I ++ ++L + +G + K+
Sbjct: 83 PLNDNQWHNVMISRDTSNLHTVKIDTKITTQIT--AGARNLDLKSDLYIGGVAKETYKSL 140
Query: 334 TEA-----GFEGKLTKVQIWNRALDFTNEIQKQVRD-----------CRTEPVLHTGL-V 376
+ GF+G L V + R D ++ C+ + + G+ +
Sbjct: 141 PKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCL 200
Query: 377 LTWTGYDDINGGVERVVPSHCSQHICP-PGYTGPECDQ 413
W G+ C C ++GP C+
Sbjct: 201 QQWDGF-------------SCD---CSMTSFSGPLCND 222
Score = 33.1 bits (75), Expect = 0.18
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 70 GTCTDLVGGFSCSCDL-GFTGKHCQHLIDDCASEPCQNGGSCV 111
G C GFSC C + F+G C D + GG +
Sbjct: 197 GVCLQQWDGFSCDCSMTSFSGPLCN---DPGTTYIFSKGGGQI 236
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 69.7 bits (169), Expect = 4e-14
Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 19/156 (12%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLID-----------DCASEPCQNGGSCVDMLDGFM 118
G + F C C+ G + C ++ +
Sbjct: 16 GQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYX 75
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEG--TDKCLDLDNKFQCECNVGYTGVMCE----- 171
C C G+ + +D C C G + L C C +G +
Sbjct: 76 CGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCT 135
Query: 172 -TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGS 206
T C+ + +C + + C C G+T
Sbjct: 136 XTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFD 171
Score = 60.0 bits (144), Expect = 8e-11
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 19/157 (12%)
Query: 98 DCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEA--DIDECLSD----PCSPEGT---D 148
+ G V M + F C C G V L + +EC + C G +
Sbjct: 6 AVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIEN 65
Query: 149 KCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGG----ICRDGVAKFTCDCPPGWT 204
N + C C GYT +D C+ C G + C C G
Sbjct: 66 PDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXV 125
Query: 205 GSRCEK------DIGSCTNMPCQNDANCIDLFQDFFC 235
+ ++ +C ++ C ++ + C
Sbjct: 126 PNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXC 162
Score = 55.8 bits (133), Expect = 2e-09
Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 62 DTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGG----SCVDMLDGF 117
I V + C C G+T ++D C C G + +
Sbjct: 57 GEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSA 116
Query: 118 MCQCRPGFVGLQCE----ADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTG 167
C C G V + E + C +++ + C+C G+T
Sbjct: 117 GCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170
Score = 42.3 bits (98), Expect = 7e-05
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 11/87 (12%)
Query: 61 NDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLI------DDCASEPCQNGGSCVDML 114
N + + CSC +G C + C ++
Sbjct: 98 NCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVE 157
Query: 115 DGFMCQCRPGFVG----LQCEADIDEC 137
+ CQC GF C
Sbjct: 158 GVYXCQCMEGFTFDXEXNVCL-GPHHH 183
Score = 41.9 bits (97), Expect = 1e-04
Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 13/108 (12%)
Query: 131 EADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID-----------DCKS 179
EA+ D G + + N F C CN G + T + C
Sbjct: 1 EAEASAVTVDTICXNGQ--LVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGE 58
Query: 180 NPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCI 227
V + C C G+T + C C CI
Sbjct: 59 FGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECI 106
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 72.8 bits (178), Expect = 6e-14
Identities = 40/184 (21%), Positives = 55/184 (29%), Gaps = 41/184 (22%)
Query: 71 TCTDLVGGFSCSCDLGFTGKHCQHLIDDCA----------SEPCQNGGSCVDMLDGFMCQ 120
C +GF + DC S C NG + +C+
Sbjct: 405 GCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGT---FECGVCR 461
Query: 121 CRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKF-----------QCECNVGYTGVM 169
C PG++G QCE C + P D+C + + QC C+ G +
Sbjct: 462 CGPGWLGSQCE-----CSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKI 516
Query: 170 CET-------NIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQN 222
+ K C G C G C C WTG C + T M N
Sbjct: 517 TGKYCECDDFSCVRYKGEMCSGHGQCSCG----DCLCDSDWTGYYCNCTTRTDTCM-SSN 571
Query: 223 DANC 226
C
Sbjct: 572 GLLC 575
Score = 60.1 bits (145), Expect = 6e-10
Identities = 31/153 (20%), Positives = 42/153 (27%), Gaps = 34/153 (22%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCA-----SEPCQNGGSCVDMLDGFMCQCRPG 124
G C+ C CD +TG +C C G C G +PG
Sbjct: 540 GQCSC----GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCEC---GSCVCIQPG 592
Query: 125 FVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLN 184
G CE C D C+ + EC G + + N +
Sbjct: 593 SYGDTCE-KCPTC-PDACTFKKE----------CVECKKFDRGALHDENTCNRY------ 634
Query: 185 GGICRDGVAKFTCDCPPGWTGSRC-EKDIGSCT 216
CRD + G C K+ C
Sbjct: 635 ---CRDEIESVKELKDTGKDAVNCTYKNEDDCV 664
Score = 59.3 bits (143), Expect = 1e-09
Identities = 30/179 (16%), Positives = 47/179 (26%), Gaps = 36/179 (20%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
+C L G + S + + C + + + + F C C
Sbjct: 383 LKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA------ 436
Query: 129 QCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN-------- 180
C+A + + GT +C C C G+ G CE + +D + +
Sbjct: 437 -CQAQAEPNSHRCNNGNGTFEC------GVCRCGPGWLGSQCECSEEDYRPSQQDECSPR 489
Query: 181 ----PCLNGGICRDGVAKFTCDCPPGWTGSRCEK-------DIGSCTNMPCQNDANCID 228
C G C G C C G K C C
Sbjct: 490 EGQPVCSQRGECLCG----QCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC 544
Score = 39.7 bits (92), Expect = 0.002
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 3/128 (2%)
Query: 102 EPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCEC 161
E SC+ + G C + ++ + P G L + F C+C
Sbjct: 378 EVIPGLKSCMGLKIGDTVSFSIEAKVRGCPQEKEKSFT--IKPVGFKDSLIVQVTFDCDC 435
Query: 162 NVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMP-C 220
++ C G C+C + + P C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC 495
Query: 221 QNDANCID 228
C+
Sbjct: 496 SQRGECLC 503
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 61.6 bits (150), Expect = 4e-12
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL- 128
+ + + ++C C D+ G+ C C GF +
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQGAMG-TNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVA 62
Query: 129 --QCEADIDECLS-DPCSPEGTDKCLDLDNKFQCECNVGYT----GVMCE 171
+CE DIDEC D CS C++L+ ++C+C G+ C+
Sbjct: 63 QRRCE-DIDECQDPDTCS----QLCVNLEGGYKCQCEEGFQLDPHTKACK 107
Score = 50.0 bits (120), Expect = 4e-08
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 106 NGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDP--CSPEGTDKCLDLDNKFQCECNV 163
+ + +ECL + CS C DL ++C C
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCS----YVCNDLKIGYECLCPD 56
Query: 164 GYTGV---MCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT 204
G+ V CE +ID+C +P +C + + C C G+
Sbjct: 57 GFQLVAQRRCE-DIDEC-QDPDTCSQLCVNLEGGYKCQCEEGFQ 98
Score = 38.1 bits (89), Expect = 6e-04
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 150 CLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT---GS 206
+ + ++C N +C D + C CP G+
Sbjct: 6 HHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR 64
Query: 207 RCEKDIGSC-TNMPCQNDANCIDLFQDFFC 235
RCE DI C C C++L + C
Sbjct: 65 RCE-DIDECQDPDTCS--QLCVNLEGGYKC 91
Score = 29.2 bits (66), Expect = 0.71
Identities = 5/53 (9%), Positives = 11/53 (20%), Gaps = 1/53 (1%)
Query: 183 LNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFC 235
+ ++ + C + C DL + C
Sbjct: 1 MKHHHHHHPMSDYDIPTTENLYFQGAM-GTNECLDNNGGCSYVCNDLKIGYEC 52
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 64.7 bits (157), Expect = 2e-11
Identities = 38/194 (19%), Positives = 56/194 (28%), Gaps = 29/194 (14%)
Query: 70 GTCTDLV-GGFSC-SCDLGFT--GKHCQHLIDDCASE-----PCQNGGSCVDMLDGFMC- 119
C+ G +SC C +GF G HC+ +D+CA CV+ GF C
Sbjct: 15 AQCSSFPDGSWSCGFCPVGFLGNGTHCED-LDECALVPDICFSTSKVPRCVNTQPGFHCL 73
Query: 120 QCRPGFVGLQCEA--------------DIDECL--SDPCSP--EGTDKCLDLDNKFQCEC 161
C P + G Q + C + C E D ++CEC
Sbjct: 74 PCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCEC 133
Query: 162 NVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQ 221
GY G D +C + ++D
Sbjct: 134 QTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDAC 193
Query: 222 NDANCIDLFQDFFC 235
+D + D D
Sbjct: 194 DDDDDNDGVTDEKD 207
Score = 63.9 bits (155), Expect = 4e-11
Identities = 41/178 (23%), Positives = 60/178 (33%), Gaps = 35/178 (19%)
Query: 96 IDDCASEPCQNGGSCVDMLDG-FMCQ-CRPGFV--GLQCEADIDECLSDP---CSPEGTD 148
D C S PC G C DG + C C GF+ G CE D+DEC P S
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVP 61
Query: 149 KCLDLDNKFQCE-CNVGYTGVMCE--------------TNIDDCK--SNPCLNGGIC--- 188
+C++ F C C Y G + CK ++ C C
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYL 121
Query: 189 -RDGVAKFTCDCPPGWTG--SRCEKDI----GSCTNMPCQNDANCIDLFQDFFCVSSH 239
+ C+C G+ G C +D N+ C +A + + + +
Sbjct: 122 GHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNS 179
Score = 49.6 bits (118), Expect = 1e-06
Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 29/127 (22%)
Query: 132 ADIDECLSDPCSPEGTDKCLDLDN-KFQC-ECNVGYT--GVMCETNIDDCKSN-----PC 182
AD D CLS+PC P C + + C C VG+ G C ++D+C
Sbjct: 1 ADPDGCLSNPCFPGAQ--CSSFPDGSWSCGFCPVGFLGNGTHC-EDLDECALVPDICFST 57
Query: 183 LNGGICRDGVAKFTCD-CPPGWTGSRCE--------------KDIGSCTNM--PCQNDAN 225
C + F C CPP + G++ + C + C A
Sbjct: 58 SKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAE 117
Query: 226 CIDLFQD 232
CI L
Sbjct: 118 CIYLGHF 124
Score = 49.6 bits (118), Expect = 1e-06
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 71 TCTDLVGGFSC-SCDLGFTGKHCQHLIDDCASE---PCQNGGSCVDMLDG---------- 116
C + GF C C + G + + A C+ C D
Sbjct: 62 RCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYL 121
Query: 117 -------FMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVM 169
+ C+C+ G+ G D L P C + N +
Sbjct: 122 GHFSDPMYKCECQTGYAGDGLICGEDSDLDGW--PNLNLVCATNATYHCIKDNCPHLPNS 179
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMP--CQNDANCI 227
+ + D + DGV +C + + + D + C N
Sbjct: 180 GQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPA 239
Query: 228 DLFQD 232
+ D
Sbjct: 240 QIDTD 244
Score = 48.1 bits (114), Expect = 3e-06
Identities = 32/181 (17%), Positives = 49/181 (27%), Gaps = 7/181 (3%)
Query: 62 DTPNDSIP---GTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM 118
D+ D P C + Q D + D +
Sbjct: 147 DSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEK 206
Query: 119 CQCRPGFVGLQCEADIDEC--LSDPCSPEGTDKCLDLDNKFQ-CECNVGYTGVMCETNID 175
C+ F Q + D DE D C +D DN + C+V G D
Sbjct: 207 DNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERD 266
Query: 176 DCKSNPCLNGG-ICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFF 234
+C + DGV +CP + + D + N+ D Q+
Sbjct: 267 NCPYVYNTDQRDTDGDGVGDHCDNCPLVHNPDQTDVDNDLVGDQCDNNEDIDDDGHQNNQ 326
Query: 235 C 235
Sbjct: 327 D 327
Score = 43.9 bits (103), Expect = 9e-05
Identities = 25/171 (14%), Positives = 44/171 (25%), Gaps = 7/171 (4%)
Query: 61 NDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEP-----CQNGGSCVDMLD 115
+ + D V +C L F + + D+ N +
Sbjct: 187 DGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNN 246
Query: 116 GFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNID 175
G C G + D C + D D C + + + + D
Sbjct: 247 GEGDACSVDIDGDDVFNERDNCPYVYN-TDQRDTDGDGVGDHCDNCPLVHNPDQTDVDND 305
Query: 176 DCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
N I DG +CP ++ + D + C D +
Sbjct: 306 LVGDQCDNNEDIDDDGHQNNQDNCPYISNANQADHDRDGQGD-ACDPDDDN 355
Score = 43.5 bits (102), Expect = 1e-04
Identities = 21/172 (12%), Positives = 39/172 (22%), Gaps = 15/172 (8%)
Query: 64 PNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDC------ASEPCQNGGSCVDMLDGF 117
+ + C C G+ G D + C + + D
Sbjct: 114 KHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNC 173
Query: 118 MCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL---DNKFQCECNVGYTGVMCETNI 174
G + D C D + TD+ + N Q + + G C+
Sbjct: 174 PHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCDNCP 233
Query: 175 DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
N C G + +C + + +
Sbjct: 234 YVH------NPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVYNTDQRDT 279
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 55.7 bits (135), Expect = 2e-10
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFV--GLQCEADIDECLSDPCSPEGTDKCLDL 153
+D+C G C++ + C+C G++ G +C D DEC GT C ++
Sbjct: 5 MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGNGT--CKNV 61
Query: 154 DNKFQCECNVGYTG 167
F+C C G+
Sbjct: 62 IGGFECTCEEGFEP 75
Score = 54.9 bits (133), Expect = 4e-10
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYT--GVMCETNIDDCKSNPCLNGGICRD 190
D+DEC G C++ D ++CEC GY G C + D+C G C++
Sbjct: 4 DMDECKEPDVCKHGQ--CINTDGSYRCECPFGYILAGNECV-DTDECSVGNPCGNGTCKN 60
Query: 191 GVAKFTCDCPPGWTGSRCEKDIGSC 215
+ F C C G+ + +C
Sbjct: 61 VIGGFECTCEEGFEPG----PMMTC 81
Score = 51.8 bits (125), Expect = 6e-09
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 63 TPNDSIPGTCTDLVGGFSCSCDLGFT--GKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQ 120
P+ G C + G + C C G+ G C D+C+ G+C +++ GF C
Sbjct: 10 EPDVCKHGQCINTDGSYRCECPFGYILAGNECVD-TDECSVGNPCGNGTCKNVIGGFECT 68
Query: 121 CRPGFVG 127
C GF
Sbjct: 69 CEEGFEP 75
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 54.4 bits (131), Expect = 2e-09
Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 29/134 (21%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHL--------IDDCASE---PCQNGGSCVDMLDGFM 118
+ V +C C+ GF+ I++CA+ C C + +
Sbjct: 10 PQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYD 69
Query: 119 CQCRPGFV------------GLQCEADIDECLS--DPCSPEGTDKCLDLDNKFQCECNVG 164
C C PG+ C+ D+DEC S C C + + C C G
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTV--CFNTVGSYSCRCRPG 126
Query: 165 YTGVMCE-TNIDDC 177
+ N D
Sbjct: 127 WKPRHGIPNNQKDT 140
Score = 54.1 bits (130), Expect = 4e-09
Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 32/136 (23%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL---------QCEADIDECLSD---PCS 143
CA C SCV+ C+C PGF C+ DI+EC + C
Sbjct: 2 SRGCA-RWCPQDSSCVN---ATACRCNPGFSSFSEIITTPMETCD-DINECATLSKVSCG 56
Query: 144 PEGTDKCLDLDNKFQCECNVGYTGVMCETN-----------IDDCKSNP--CLNGGICRD 190
C + + + C C+ GY V +D+C S C + +C +
Sbjct: 57 KFSD--CWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 191 GVAKFTCDCPPGWTGS 206
V ++C C PGW
Sbjct: 115 TVGSYSCRCRPGWKPR 130
Score = 45.6 bits (108), Expect = 3e-06
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 70 GTCTDLVGGFSCSCDLGFT------------GKHCQHLIDDCASEP--CQNGGSCVDMLD 115
C + G + C C G+ CQ +D+C+S C + C + +
Sbjct: 59 SDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQD-VDECSSGQHQCDSSTVCFNTVG 117
Query: 116 GFMCQCRPGFVGLQCE---ADIDEC 137
+ C+CRPG+ C
Sbjct: 118 SYSCRCRPGWKPRHGIPNNQKDTVC 142
Score = 29.4 bits (66), Expect = 1.2
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 15/75 (20%)
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGS--RCEKDIGSCT---------NMPCQ 221
+ C + C C + C C PG++ + +C + C
Sbjct: 1 DSRGC-ARWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56
Query: 222 NDANCIDLFQDFFCV 236
++C + + CV
Sbjct: 57 KFSDCWNTEGSYDCV 71
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 53.9 bits (130), Expect = 3e-09
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 96 IDDCASEPCQNGGSCVDMLDG-FMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLD 154
+D C C+ C + ++C C GF + E + + + C D +
Sbjct: 4 VDPCFRANCEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPAD--C-DPN 58
Query: 155 NKFQCECNVGYT---GVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGS 206
+ CEC GY G +C +ID+C N G+C + F C C P +
Sbjct: 59 TQASCECPEGYILDDGFICT-DIDEC-ENGGFCSGVCHNLPGTFECICGPDSALA 111
Score = 50.8 bits (122), Expect = 3e-08
Identities = 23/108 (21%), Positives = 31/108 (28%), Gaps = 15/108 (13%)
Query: 76 VGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFV---GLQCEA 132
+ C C GF + C D C+C G++ G C
Sbjct: 21 QTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILDDGFICT- 78
Query: 133 DIDECLS-DPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKS 179
DIDEC + CS C +L F+C C
Sbjct: 79 DIDECENGGFCS----GVCHNLPGTFECICGPDSAL-----AGQIGTD 117
Score = 44.7 bits (106), Expect = 4e-06
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDN-KFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDG 191
+D C C + C LD + C C G+ + E + N C
Sbjct: 3 PVDPCFRANCEYQ----CQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPN 58
Query: 192 VAKFTCDCPPGWT---GSRCEKDIGSCTN 217
+C+CP G+ G C DI C N
Sbjct: 59 TQ-ASCECPEGYILDDGFICT-DIDECEN 85
Score = 36.6 bits (85), Expect = 0.003
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 62 DTPNDSIPGTCTDLVGGFSCSCDLGFT---GKHCQHLIDDCASE-PCQNGGSCVDMLDGF 117
N + D SC C G+ G C ID+C + C G C ++ F
Sbjct: 44 MFCNQTACPADCDPNTQASCECPEGYILDDGFICTD-IDECENGGFCS--GVCHNLPGTF 100
Query: 118 MCQCRPGFVG 127
C C P
Sbjct: 101 ECICGPDSAL 110
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating,
carbohydrate binding protein; 1.60A {Myxococcus xanthus}
PDB: 4fbv_A*
Length = 267
Score = 53.9 bits (129), Expect = 2e-08
Identities = 29/216 (13%), Positives = 58/216 (26%), Gaps = 58/216 (26%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDD------CASEPCQNGGSCVDMLDGFMCQCRP 123
G ++ +GF G S P Q GG V
Sbjct: 44 GKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWV------------ 91
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDD------C 177
+G + + +I +S + G K L + E +G+ + + +
Sbjct: 92 --LGARDKQNI-VAVSIKSNDGG--KTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGG 146
Query: 178 KSNPCLNGGIC-----------------------RDGVAKFTCDCPPGWTGSRCEKDIGS 214
+ P +GG+ G + + P G+ G+ D +
Sbjct: 147 SAAPWHSGGVWVLGTRGKQNVINVDAKSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYT 206
Query: 215 ------CTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
+ P + ++ V + +V
Sbjct: 207 VENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASS 242
Score = 44.7 bits (105), Expect = 2e-05
Identities = 20/172 (11%), Positives = 43/172 (25%), Gaps = 52/172 (30%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDD------CASEPCQNGGSCVDMLDGFMCQCRP 123
G ++ +GF + ++ P +GG V
Sbjct: 111 GKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWV------------ 158
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDD------C 177
+G + + ++ + + G K L + E +G+ G + +
Sbjct: 159 --LGTRGKQNV-INVDAKSNDGG--KTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGG 213
Query: 178 KSNPCLNGGIC-----------------------RDGVAKFTCDCPPGWTGS 206
+ P GG G + + P G+
Sbjct: 214 STAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGTMIYNGEGPIGFRAR 265
Score = 38.5 bits (89), Expect = 0.002
Identities = 21/134 (15%), Positives = 34/134 (25%), Gaps = 29/134 (21%)
Query: 106 NGGSCVDMLDGFMCQCRPGFVGLQCEADIDE------CLSDPCSPEGTDKCLDLDNKFQC 159
+GG + + + GF G A+ S P P G +
Sbjct: 42 DGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGV---------WVL 92
Query: 160 ECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM- 218
V S +GG G + + P G+ + D S N
Sbjct: 93 GARDKQNIV--------AVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQW 144
Query: 219 -----PCQNDANCI 227
P + +
Sbjct: 145 GGSAAPWHSGGVWV 158
Score = 35.4 bits (81), Expect = 0.024
Identities = 13/106 (12%), Positives = 26/106 (24%), Gaps = 23/106 (21%)
Query: 70 GTCTDLVGGFSCSCDLGFTGKHCQHLIDD------CASEPCQNGGSCVDMLDGFMCQCRP 123
G ++ +GF G ++ P GG +
Sbjct: 178 GKTLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGGFWMI----------- 226
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVM 169
G Q ++ + K L + E +G+ +
Sbjct: 227 GARNGQNVVALN------VASSDGGKTLAGTMIYNGEGPIGFRARL 266
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735,
laminin_G_3 concanavalin A- lectin/glucanases
superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}
Length = 355
Score = 52.1 bits (124), Expect = 1e-07
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 274 ATINDGQWHHVAIVW--TQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIK 331
+ +W+HVA+ + G + G + G +G+
Sbjct: 216 KPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDGFDPNSDMGFYIGR---IYGF 272
Query: 332 AYTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTW 379
+ E F GK+++V++W+ A N++++ + GL L +
Sbjct: 273 KWGERPFHGKMSEVRVWSVART-ENQLKQ---NMLGVDPASEGLALYY 316
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 47.7 bits (114), Expect = 2e-07
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 96 IDDCASEPCQNG-GSCVDMLDGFMCQCRPGFV-----GLQCEADIDECLSDPCSPEGTDK 149
ID+C P G G CV+ F C+C G+ C DIDEC DP G
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGG-V 60
Query: 150 CLDLDNKFQCECNVGYT 166
C + + ++CEC G+
Sbjct: 61 CHNTEGSYRCECPPGHQ 77
Score = 45.0 bits (107), Expect = 2e-06
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE----TNIDDCKSNPCL-NGGI 187
DIDEC P G +C++ F+C+C+ GY +ID+C+ +P L GG+
Sbjct: 2 DIDECRISPDLC-GRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 188 CRDGVAKFTCDCPPGWTGS 206
C + + C+CPPG S
Sbjct: 61 CHNTEGSYRCECPPGHQLS 79
Score = 44.2 bits (105), Expect = 3e-06
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 70 GTCTDLVGGFSCSCDLGFT-----GKHCQHLIDDCASEPCQ-NGGSCVDMLDGFMCQCRP 123
G C + G F C CD G+ K+C ID+C +P GG C + + C+C P
Sbjct: 16 GQCVNTPGDFECKCDEGYESGFMMMKNCMD-IDECQRDPLLCRGGVCHNTEGSYRCECPP 74
Query: 124 GF 125
G
Sbjct: 75 GH 76
Score = 31.1 bits (71), Expect = 0.11
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 172 TNIDDCKSNPCLNG-GICRDGVAKFTCDCPPGWTGSR-----------CEKDIGSCTNMP 219
T+ID+C+ +P L G G C + F C C G+ C++D C
Sbjct: 1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGV 60
Query: 220 CQN 222
C N
Sbjct: 61 CHN 63
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 51.6 bits (123), Expect = 3e-07
Identities = 39/178 (21%), Positives = 62/178 (34%), Gaps = 39/178 (21%)
Query: 72 CTDLVGGFSC-SCDLGFTGKHCQHLIDDCASEPC-------QNGGSCVDMLDGFM----- 118
C G +C C + + + D EPC +NGG C D +
Sbjct: 348 CQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAG 407
Query: 119 -CQCRPGFVGLQCE-----------ADIDECLSDPCSPEGTDKCLDLDNKF--QCECNVG 164
C+C+ G +C+ D C S C+P GT + + C C
Sbjct: 408 QCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRL 467
Query: 165 YTGVMCE----------TNIDDCKSNPCLNGGICRDGVAKFT--CDCPPGWTGSRCEK 210
TG C+ ++D C+ C GG + ++ + C C P G +C +
Sbjct: 468 VTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 41.2 bits (96), Expect = 6e-04
Identities = 40/212 (18%), Positives = 57/212 (26%), Gaps = 66/212 (31%)
Query: 64 PNDSIPGTCTDLVGGFSCSCDLGFTGKHCQH--------------LIDDCASEPCQ-NGG 108
P D + +V G C C G +C+ + A + C N
Sbjct: 265 PVDGVNEEVEGMVHG-HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 323
Query: 109 SCVDMLDGFMCQ------------CRPGFVGLQCEA--------------DIDECLSDPC 142
S D + C+ +G CE D + C C
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTC 383
Query: 143 SPEGTDKCLDLDNKF---------QCECNVGYTGVMCE-----------TNIDDCKSNPC 182
P G++ D QC C + G C+ + CKS C
Sbjct: 384 DPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCAC 443
Query: 183 LNGGICRDG----VAKFTCDCPPGWTGSRCEK 210
G G C C TG RC++
Sbjct: 444 NPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQ 475
Score = 38.9 bits (90), Expect = 0.002
Identities = 24/145 (16%), Positives = 40/145 (27%), Gaps = 32/145 (22%)
Query: 77 GGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQ-CRPGFVGLQCEADID 135
GG +C G++C+ +P D+ D +C+ C G + D
Sbjct: 342 GGVCDNCQHNTMGRNCEQ------CKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICD 395
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKF 195
QC C + G C+ +C++G
Sbjct: 396 GYTDFSVGLIAG----------QCRCKLHVEGERCD---------------VCKEGFYDL 430
Query: 196 TCDCPPGWTGSRCEKDIGSCTNMPC 220
+ + P G C PC
Sbjct: 431 SAEDPYGCKSCACNPLGTIPGGNPC 455
Score = 34.7 bits (79), Expect = 0.057
Identities = 31/192 (16%), Positives = 51/192 (26%), Gaps = 30/192 (15%)
Query: 65 NDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM-CQCRP 123
+ + G C C+ G + + C G +C +D + RP
Sbjct: 247 DMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRP 306
Query: 124 GFVGLQ--CEADIDECLSDPCSPEGTDKCLDLDNKFQC--ECNVGYTGVMCE-------- 171
C+ S C + + C G CE
Sbjct: 307 AEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQ 366
Query: 172 ------TNIDDCKSNPC-----LNGGICRD------GVAKFTCDCPPGWTGSRCEKDIGS 214
+ + C+ C NGGIC G+ C C G RC+
Sbjct: 367 HPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEG 426
Query: 215 CTNMPCQNDANC 226
++ ++ C
Sbjct: 427 FYDLSAEDPYGC 438
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 46.9 bits (112), Expect = 4e-07
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 96 IDDCASEP--CQNGGSCVDMLDGFMCQCRPGFV----GLQCEADIDECLSDPCSPEGTDK 149
+D+C+ +P C C ++ F C+C G+ CE DIDEC + C+
Sbjct: 3 VDECSLKPSICGTA-VCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA----QL 56
Query: 150 CLDLDNKFQCECNV--GYT 166
C++ + C C+ G+
Sbjct: 57 CVNYPGGYTCYCDGKKGFK 75
Score = 45.7 bits (109), Expect = 8e-07
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 13/73 (17%)
Query: 70 GTCTDLVGGFSCSCDLGFT----GKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQC--RP 123
C ++ G F C C G+ K C+ ID+C+ C CV+ G+ C C +
Sbjct: 16 AVCKNIPGDFECECPEGYRYNLKSKSCED-IDECSENMCA--QLCVNYPGGYTCYCDGKK 72
Query: 124 GFV----GLQCEA 132
GF CE
Sbjct: 73 GFKLAQDQKSCEV 85
Score = 40.3 bits (95), Expect = 6e-05
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYT----GVMCETNIDDCKSNPCLNGGIC 188
D+DEC P GT C ++ F+CEC GY CE +ID+C N C +C
Sbjct: 2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMC--AQLC 57
Query: 189 RDGVAKFTCDC--PPGWT----GSRCE 209
+ +TC C G+ CE
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQDQKSCE 84
Score = 29.2 bits (66), Expect = 0.51
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 174 IDDCKSNPCL-NGGICRDGVAKFTCDCPPGWT----GSRCEKDIGSCTNMPCQ 221
+D+C P + +C++ F C+CP G+ CE DI C+ C
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCE-DIDECSENMCA 54
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 48.8 bits (116), Expect = 7e-07
Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 26/137 (18%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKC 150
C+ C G +C+C G++G CE S
Sbjct: 85 ECRCRDQSRDRSLCHGKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 140
Query: 151 LDLD-------NKFQCECNVG------YTGVMCETNIDDCKSN-----PCLNGGICRDGV 192
+ QC C+ G CE + +C+ G+C G
Sbjct: 141 NSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCG- 199
Query: 193 AKFTCDCPPGWTGSRCE 209
C C PG+ GS C+
Sbjct: 200 ---KCRCHPGFEGSACQ 213
Score = 33.0 bits (75), Expect = 0.11
Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 144 PEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGW 203
G + + QCEC + C G G+ C C G+
Sbjct: 69 ALGFTDIVTVQVLPQCECRCRDQS---------RDRSLCHGKGFLECGI----CRCDTGY 115
Query: 204 TGSRCEKDIGSCTNMPCQNDANCIDLFQDFFC 235
G CE + + + +C C
Sbjct: 116 IGKNCECQ--TQGRSSQELEGSCRKDNNSIIC 145
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 47.1 bits (112), Expect = 1e-06
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC 215
C T C+ C G C + + +TC C PG+ G CE
Sbjct: 117 CYT--ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 42.5 bits (100), Expect = 5e-05
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 79 FSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDEC 137
C C C C G C++ + + C C PGF G +CE D+
Sbjct: 107 EHCLKKKHAL---CY--TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 36.7 bits (85), Expect = 0.005
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLIDDC 99
G C + +G ++CSC GF G C+++ DD
Sbjct: 130 QGECLETIGNYTCSCYPGFYGPECEYVRDDD 160
Score = 35.9 bits (83), Expect = 0.009
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDC 177
C CS +G CL+ + C C G+ G CE DD
Sbjct: 122 CQDMSCSKQGE--CLETIGNYTCSCYPGFYGPECEYVRDDD 160
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 48.9 bits (116), Expect = 2e-06
Identities = 30/212 (14%), Positives = 59/212 (27%), Gaps = 34/212 (16%)
Query: 173 NIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDA----NCID 228
C + ++ + P + G + + + +
Sbjct: 352 KYSGCLKDIEISRT-------PYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVS 404
Query: 229 LFQDF---FCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFH-------------- 271
+ S+ + G +I S G Q L L H
Sbjct: 405 IDVGTEINLSFSTRNESG---IILLGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIK 461
Query: 272 -EYATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNI 330
E +DG+ H V + T+G T+ + ++N + + V G P
Sbjct: 462 PEPNRFHDGREHSVHVERTRGIFTVQIDED-RRHMQNLTEEQPIEVKKLFVGGAPPEFQP 520
Query: 331 KAY-TEAGFEGKLTKVQIWNRALDFTNEIQKQ 361
F+G + + I + +DF I +
Sbjct: 521 SPLRNIPAFQGCVWNLVINSIPMDFAQPIAFK 552
Score = 42.8 bits (100), Expect = 2e-04
Identities = 33/226 (14%), Positives = 65/226 (28%), Gaps = 37/226 (16%)
Query: 177 CKSNPCLNGG-ICRDGVAKFTCDCPPGWTGSRCEKDIGSCT---------NMPCQNDANC 226
C + I + DC + E G+ + P + N
Sbjct: 167 CMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNI 226
Query: 227 IDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFH-----------EYAT 275
+ F SS ++ L+ + ++ + EL D +
Sbjct: 227 STVMFKFRTFSSSAL-----LMYLATRDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQN 281
Query: 276 INDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVL--------GKPRP 327
NDG+W + Q + + + + EN + S +G + G P
Sbjct: 282 HNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTL 341
Query: 328 DNIKA-YTEAGFEGKLTKVQIWNRALDFTNEIQK--QVRDCRTEPV 370
N++ + G L ++I + + + C E V
Sbjct: 342 RNLRPEVNVKKYSGCLKDIEISRTPYNILSSPDYVGVTKGCSLENV 387
Score = 30.8 bits (69), Expect = 0.85
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 275 TINDGQWHHVAIVWTQGTLTLI 296
TI+D W+ + T ++
Sbjct: 88 TIDDSYWYRIEASRTGRNGSIS 109
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 48.7 bits (116), Expect = 3e-06
Identities = 10/122 (8%), Positives = 21/122 (17%), Gaps = 6/122 (4%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSD-----PCSPEGTDKCL 151
+G S C F + + C T+
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVR 326
Query: 152 DLDNKFQCE-CNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEK 210
+ + C + S + G ++ +
Sbjct: 327 CQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKP 386
Query: 211 DI 212
I
Sbjct: 387 RI 388
Score = 34.1 bits (78), Expect = 0.092
Identities = 5/62 (8%), Positives = 10/62 (16%), Gaps = 3/62 (4%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIG-SCTNMPCQN--DANC 226
K + L+G + C + C
Sbjct: 262 SGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLC 321
Query: 227 ID 228
+
Sbjct: 322 TN 323
Score = 32.5 bits (74), Expect = 0.24
Identities = 20/128 (15%), Positives = 29/128 (22%), Gaps = 17/128 (13%)
Query: 43 NLCLKPTFISPTPLFPVINDTPNDSIPG-TCTDLVGGFSCSCDLGFTGKHCQHLIDDCAS 101
NLCL T S P + + ++ G + C F +
Sbjct: 253 NLCLLKTSESGLPSTRI---KKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIV 309
Query: 102 -----EPCQNGGSCVDMLD--GFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLD 154
E CQ C + + F C +C S K L
Sbjct: 310 AAKSHEACQK--LCTNAVRCQFFTYTPAQA----SCNEGKGKCYLKLSSNGSPTKILHGR 363
Query: 155 NKFQCECN 162
Sbjct: 364 GGISGYTL 371
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 46.0 bits (109), Expect = 5e-06
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG----KPRPDNI 330
+N +W + +L + L G + LG P +
Sbjct: 92 KVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQAL 151
Query: 331 KAYTEAGFEGKLTKVQIWNRALDFTNEIQKQ--VRDCRT 367
GF G L V + +R L + + +R C T
Sbjct: 152 PKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRPCPT 190
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 45.1 bits (107), Expect = 6e-06
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
C T C + C G C + + +TC C PG++G +CE+ +
Sbjct: 117 CYT--AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 157
Score = 41.7 bits (98), Expect = 9e-05
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 80 SCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
CS C C + C G CV+ ++ + C+C PGF GL+CE
Sbjct: 108 RCSKKKLAL---CY--TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE 154
Score = 34.7 bits (80), Expect = 0.020
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
C + + C C + CS G C++ N + C+C+ G++G+ CE
Sbjct: 109 CSKKKLAL---CY--TAACTNTSCSGHGE--CVETINNYTCKCDPGFSGLKCE 154
Score = 33.6 bits (77), Expect = 0.044
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLI 96
G C + + ++C CD GF+G C+ ++
Sbjct: 130 HGECVETINNYTCKCDPGFSGLKCEQIV 157
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 42.1 bits (99), Expect = 7e-06
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 176 DCKSNPCLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CLNGG+C + + +TC+C G++G RC+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 37.9 bits (88), Expect = 3e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 98 DCASEPCQNGGSC--VDMLDGFMCQCRPGFVGLQCE 131
C NGG C ++ LD + C C G+ G +C+
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ 43
Score = 32.1 bits (73), Expect = 0.028
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 70 GTCTDL--VGGFSCSCDLGFTGKHCQH 94
G C + + ++C+C +G++G CQ
Sbjct: 18 GVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 27.5 bits (61), Expect = 1.0
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCET 172
C G ++ + + C C +GY+G C+T
Sbjct: 8 SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module,
bacterial pathogen, sialic acid, sugar-binding protein;
HET: SIA; 2.2A {Clostridium perfringens}
Length = 191
Score = 45.1 bits (106), Expect = 1e-05
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 7/98 (7%)
Query: 267 FLAFHEYATINDGQWHHVAIVWTQGT-LTLITEG-LIA-GKVENYGSGKSLPQYGWVVLG 323
F H + + +A+ +G + G L+ N ++ +
Sbjct: 93 FNVHHSADVTFNRGINTLALKIEKGIGAKIFLNGSLVKTVSDPNIKFLNAINLNSGFIGK 152
Query: 324 KPRPDNIKAYTEAGFEGKLTKVQIWNRALDFTNEIQKQ 361
R + Y F G + + I+++ + N + ++
Sbjct: 153 TDRANGYNEY---LFRGNIDFMNIYDKPVS-DNYLLRK 186
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 44.8 bits (105), Expect = 3e-05
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 8/145 (5%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFV--GLQCEADIDECLS-DPCSPEGTDKCLDL 153
++C C D+ G+ C C GF + DIDEC D CS C++L
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ----LCVNL 56
Query: 154 DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIG 213
+ ++C+C G+ S L R V K T D + +++
Sbjct: 57 EGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVV 115
Query: 214 SCTNMPCQNDANCIDLFQDFFCVSS 238
+ N DL Q C +
Sbjct: 116 ALDTEVASNRIYWSDLSQRMICSTQ 140
Score = 40.2 bits (93), Expect = 0.001
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 8/133 (6%)
Query: 71 TCTDLVGGFSCSCDLGFT--GKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFV-- 126
C DL G+ C C GF + ID+C +P CV++ G+ CQC GF
Sbjct: 13 VCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLD 71
Query: 127 -GLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNG 185
+ + + + + ++ + SN
Sbjct: 72 PHTKACKAVGSIAYLFFTN--RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS 129
Query: 186 GICRDGVAKFTCD 198
+ + + D
Sbjct: 130 DLSQRMICSTQLD 142
Score = 28.7 bits (63), Expect = 4.5
Identities = 11/47 (23%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 169 MCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT----GSRCEKD 211
+ C CL KFTC CP G C +
Sbjct: 354 RTTLSNGGC-QYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 43.7 bits (103), Expect = 4e-05
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG----KPRPDNI 330
IN W H+ Q +L + L G + LG +
Sbjct: 105 PINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKL 164
Query: 331 KAYTEAGFEGKLTKVQIWNRALDFTNEIQKQ--VRDC 365
GF G + V + + L + + C
Sbjct: 165 PKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHC 201
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 40.5 bits (94), Expect = 4e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 175 DDCKSNPCLNGGICR-----DGVAKFTCDCPPGWTGSRCE 209
+ + C+NGG C +++ C C PG+TG+RC
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 34.3 bits (78), Expect = 0.006
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 97 DDCASEPCQNGGSC-----VDMLDGFMCQCRPGFVGLQCE 131
+ C NGG C + ++C+C+PGF G +C
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT 46
Score = 25.5 bits (55), Expect = 8.3
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 11/45 (24%)
Query: 141 PCSPEGTDKCL-----------DLDNKFQCECNVGYTGVMCETNI 174
C+ + C+ +++ C+C G+TG C N+
Sbjct: 5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENV 49
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 39.8 bits (93), Expect = 4e-05
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 175 DDCKSNPCLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CL+ G+C + + K+ C+C G+ G RC+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 33.7 bits (77), Expect = 0.008
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 97 DDCASEPCQNGGSC--VDMLDGFMCQCRPGFVGLQCE 131
C + G C ++ LD + C C G++G +C+
Sbjct: 7 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
Score = 30.2 bits (68), Expect = 0.12
Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 70 GTCT--DLVGGFSCSCDLGFTGKHCQH 94
G C + + ++C+C +G+ G+ CQ+
Sbjct: 18 GVCMYIEALDKYACNCVVGYIGERCQY 44
Score = 27.5 bits (61), Expect = 1.3
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 140 DPCSPEGTDKCL--------DLDNKFQCECNVGYTGVMCE 171
C CL + +K+ C C VGY G C+
Sbjct: 4 SECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ 43
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 42.5 bits (100), Expect = 6e-05
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNM 218
C T C+ C G C + + +TC+C G+ G +C+ + +
Sbjct: 117 CYT--ASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQF-VQVDPRL 162
Score = 37.5 bits (87), Expect = 0.003
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 79 FSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
+C C C C G CV++++ + C C G+ G QC+
Sbjct: 107 DACHKLKAAL---CY--TASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQ 154
Score = 32.5 bits (74), Expect = 0.13
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 67 SIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDD 98
S G C +++ ++C+CD+G+ G CQ + D
Sbjct: 128 SGHGECVEIINNYTCNCDVGYYGPQCQFVQVD 159
Score = 32.1 bits (73), Expect = 0.17
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCE 171
C + C C CS G C+++ N + C C+VGY G C+
Sbjct: 109 CHKLKAAL---CY--TASCQPWSCSGHGE--CVEIINNYTCNCDVGYYGPQCQ 154
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 44.1 bits (103), Expect = 6e-05
Identities = 19/113 (16%), Positives = 29/113 (25%), Gaps = 15/113 (13%)
Query: 103 PCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECN 162
++ G C + C + G + L ++ C+CN
Sbjct: 402 KAEDRGQCNHVRINQTVTFWVSLQATHCLPEPHLLRL---RALGFSEELIVELHTLCDCN 458
Query: 163 VGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC 215
C + G + GV C C PG G CE
Sbjct: 459 -------CSDTQPQA-PHCSDGQGHLQCGV----CSCAPGRLGRLCESRGLEN 499
Score = 34.9 bits (79), Expect = 0.048
Identities = 14/61 (22%), Positives = 18/61 (29%), Gaps = 12/61 (19%)
Query: 78 GFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDEC 137
C C+ C G G +C C PG +G CE+ E
Sbjct: 452 HTLCDCN-------CSDTQPQA-PHCSDGQGHLQC---G-VCSCAPGRLGRLCESRGLEN 499
Query: 138 L 138
L
Sbjct: 500 L 500
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 43.2 bits (101), Expect = 9e-05
Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 10/132 (7%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFV----GLQCEADIDECLSDP-CSPEGTDKC 150
++C C + C C G+ G C+ D++EC + CS C
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYCSQ----GC 57
Query: 151 LDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEK 210
+ + FQC C GY + P L D + E
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 211 DIGSCTNMPCQN 222
I + +
Sbjct: 118 AIALDFHHRREL 129
Score = 41.7 bits (97), Expect = 3e-04
Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 8/111 (7%)
Query: 133 DIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYT----GVMCETNIDDCKSNPCLNGGIC 188
+ C + KC + QC C+ GY G C+ ++++C C
Sbjct: 2 GEENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQ-DVNECAEEGYC-SQGC 57
Query: 189 RDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCVSSH 239
+ F C C G+ + + P AN ID+ Q S +
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEY 108
Score = 35.9 bits (82), Expect = 0.019
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 172 TNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTN-MPCQNDANC 226
T ++C N C+ C C G+ R +D +C + C + C
Sbjct: 1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGY---RLTEDGRTCQDVNECAEEGYC 53
Score = 35.1 bits (80), Expect = 0.038
Identities = 24/131 (18%), Positives = 41/131 (31%), Gaps = 18/131 (13%)
Query: 71 TCTDLVGGFSCSCDLGFT----GKHCQHLIDDCASEP-CQNGGSCVDMLDGFMCQCRPGF 125
C + G C+C G+ G+ CQ +++CA E C G C + F C C G+
Sbjct: 16 KCQMIRGAVQCTCHTGYRLTEDGRTCQD-VNECAEEGYCSQG--CTNSEGAFQCWCEAGY 72
Query: 126 VGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNG 185
D S + L + + T + + N
Sbjct: 73 EL----------RPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD 122
Query: 186 GICRDGVAKFT 196
R + ++
Sbjct: 123 FHHRRELVFWS 133
Score = 28.2 bits (62), Expect = 6.3
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 3/49 (6%)
Query: 165 YTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT---GSRCEK 210
+ C N +C +TC CP G+ C +
Sbjct: 338 LHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACAQ 386
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 43.3 bits (102), Expect = 9e-05
Identities = 14/140 (10%), Positives = 24/140 (17%), Gaps = 9/140 (6%)
Query: 70 GTCTDLVGGFSC----SCDLGFTGKHCQHLI-DDCASEPCQNGGSCVDMLDGFMCQCRPG 124
G G C S KH C+N + + ++
Sbjct: 25 GRLAVTTHGLPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGD 84
Query: 125 FVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLN 184
F C G D D + C
Sbjct: 85 FGYCDLNY----CEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGL 140
Query: 185 GGICRDGVAKFTCDCPPGWT 204
+ + + +
Sbjct: 141 RPLFEKKSLEDKTERELLES 160
Score = 41.0 bits (96), Expect = 5e-04
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 13/83 (15%)
Query: 146 GTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTG 205
+ N N C N +GV + P +
Sbjct: 38 AWASAQAKALSKHQDFNSA----------VQLVENFCRNPDGDEEGVWCYVAGKPGDFGY 87
Query: 206 S---RCEKDIGSCTNMPCQNDAN 225
CE+ + T D++
Sbjct: 88 CDLNYCEEAVEEETGDGLDEDSD 110
Score = 28.7 bits (64), Expect = 4.5
Identities = 8/82 (9%), Positives = 16/82 (19%), Gaps = 10/82 (12%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGL 128
P + V + F + + + DG G
Sbjct: 67 PDGDEEGVWCYVAGKPGDFGYCDLNYCEEAV----------EEETGDGLDEDSDRAIEGA 116
Query: 129 QCEADIDECLSDPCSPEGTDKC 150
++ + G C
Sbjct: 117 TATSEYQTFFNPATFGSGEADC 138
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 38.7 bits (90), Expect = 1e-04
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 175 DDCKSNPCLNGGICR----DGVAKFTCDCPPGWTGSRCE 209
+ + CLN C + ++C+C G+ G RCE
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 31.4 bits (71), Expect = 0.045
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 97 DDCASEPCQNGGSCVDMLDG----FMCQCRPGFVGLQCE 131
+ + C N C + + C+C GF+G +CE
Sbjct: 9 ETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 24.9 bits (54), Expect = 10.0
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 70 GTCTDLVGG----FSCSCDLGFTGKHCQH 94
C + +SC C +GF G+ C++
Sbjct: 20 AHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 42.2 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 129 QCEADIDECLSDPC-----SPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCL 183
EA + C + P G L + F C+C C+ + S+ C
Sbjct: 398 SIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCA-------CQAQAEPN-SHRCN 449
Query: 184 NG-GICRDGVAKFTCDCPPGWTGSRCE 209
NG G GV C C PGW GS+CE
Sbjct: 450 NGNGTFECGV----CRCGPGWLGSQCE 472
Score = 32.6 bits (73), Expect = 0.28
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 77 GGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
F C C CQ + + G+ G +C+C PG++G QCE
Sbjct: 429 VTFDCDCA-------CQAQAEPNSHRCNNGNGTFEC---G-VCRCGPGWLGSQCE 472
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 40.3 bits (94), Expect = 3e-04
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 274 ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRP-DNIKA 332
++DG+WH V + ++ L +G ++ + + G P N++
Sbjct: 81 PRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGHPIMRIA---LGGLLFPASNLRL 137
Query: 333 YTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDC 365
+G L + ++ + + +R C
Sbjct: 138 PLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 170
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 40.7 bits (94), Expect = 3e-04
Identities = 20/117 (17%), Positives = 29/117 (24%), Gaps = 9/117 (7%)
Query: 96 IDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDN 155
+ + V +L VG C D + D +
Sbjct: 75 LRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCL-----GXQDGVAAFEVDVIVMNSE 129
Query: 156 KFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDI 212
+C C NGG C + C+CP G+ G CE
Sbjct: 130 GNTILXTPQNAIFFKTCQQAEC-PGGCRNGGFC---NERRICECPDGFHGPHCEGTK 182
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 39.9 bits (93), Expect = 5e-04
Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSG--KSLPQYGWVVLG--KPRPDNI 330
++DG+WH V + ++ L +G ++ + LG N+
Sbjct: 94 RLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNL 153
Query: 331 KAYTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDC 365
+ +G L + ++ + + +R C
Sbjct: 154 RLPLVPALDGCLRRDSWLDKQAEISASAPTSLRSC 188
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 40.5 bits (94), Expect = 9e-04
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 97 DDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQCE 131
+ C S PCQN G C+ D + C C R GF G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 39.3 bits (91), Expect = 0.002
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 175 DDCKSNPCLNGGIC-RDGVAKFTCDCPP-GWTGSRCEK 210
+ C SNPC N G C G ++ CDC G+ G C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT 39
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 39.1 bits (91), Expect = 0.001
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 5/96 (5%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG---KPRPDNIK 331
I G W V + L E+ L + +G
Sbjct: 92 PIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARG 151
Query: 332 AYTEAGFEGKLTKVQIWNRALDFTNEIQKQ--VRDC 365
A +GF+G + V + L + + V
Sbjct: 152 AAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVAPF 187
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 40.0 bits (93), Expect = 0.001
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 96 IDDCASEPCQNGGSCVDM-LDGFMCQC-RPGFVGLQCE 131
++ C PCQ+ G CV LD + C C R G+ G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 40.0 bits (93), Expect = 0.001
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 174 IDDCKSNPCLNGGIC-RDGVAKFTCDC-PPGWTGSRCEK 210
++ C PC + GIC R G+ ++ CDC G++G C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI 40
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 40.0 bits (93), Expect = 0.001
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCK 178
C+ C + C+P G +C C+ G+ G C T K
Sbjct: 381 CRATVQPAQTLTSECSRLCRNGYCTPTG-----------KCCCSPGWEGDFCRT----AK 425
Query: 179 SNP-CLNGGICRDGVAKFTCDCPPGWTGSRCEK 210
P C +GG+C V C C G+ G +CE+
Sbjct: 426 CEPACRHGGVC---VRPNKCLCKKGYLGPQCEQ 455
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 38.7 bits (90), Expect = 0.001
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG-KPRPDNI-KA 332
ND WH V + +T+ +G++ L + +G P ++ +
Sbjct: 85 KFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGS 144
Query: 333 YTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCR 366
F G L +V N + + D +
Sbjct: 145 PVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPK 178
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 39.8 bits (92), Expect = 0.001
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 275 TINDGQWHHVAIVWTQGTLTLI------TEGLIAGKVENYGSGKSLPQYGWVVL---GKP 325
+ DGQ H V + G TL + A +++ + V+ G P
Sbjct: 312 KVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLP 371
Query: 326 RPDNIKAYTEAGFEGKLTKVQIWNRALDFTNEIQKQV 362
A A + G + +++ R LD K
Sbjct: 372 DVPVTSAPVTAFYRGCM-TLEVNRRLLDLDEAAYKHS 407
Score = 34.8 bits (79), Expect = 0.051
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 27/168 (16%)
Query: 159 CECNVGYTGVMCETNIDDCKSN-PCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTN 217
C+ G G+ ++D C+ PC+ + + + + G R T
Sbjct: 4 AHCD-GRGGLKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTR 62
Query: 218 MPCQ-----NDANCIDLF------QDFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDA 266
+ + D I LF + ++ ++ R +Q +GV
Sbjct: 63 LVAEFDFRTFDPEGILLFAGGHQDSTWIVLA---LRAGRLELQLRYNGVGRVTSSG---- 115
Query: 267 FLAFHEYATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSL 314
IN G W +++ L + K+ G
Sbjct: 116 -------PVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQP 156
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 38.8 bits (90), Expect = 0.002
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAY- 333
INDGQWH + IV + L + + + + V G P +
Sbjct: 113 KINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVGGLPINYTTRRIG 172
Query: 334 -TEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEPVLHTGLVLTWTGY 382
+G + + + +D +G TG+
Sbjct: 173 PVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANA-ESGTYFDGTGF 221
Score = 35.8 bits (82), Expect = 0.025
Identities = 32/205 (15%), Positives = 55/205 (26%), Gaps = 27/205 (13%)
Query: 168 VMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQ---NDA 224
M + +D + + G C T G+ + +G + +
Sbjct: 186 HMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTGFAKAVGGFKVGLDLLVEFEFRTTRP 245
Query: 225 NCIDLFQ-----DFFCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFHEYATINDG 279
+ L D + +I V A + +G
Sbjct: 246 TGVLLGVSSQKMDGMGIE---------MIDEKLM-FHVDNGAGRFTAIYDAEIPGHMCNG 295
Query: 280 QWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAY---TEA 336
QWH V + L L+ +G + S V +G P + + T
Sbjct: 296 QWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGG-FPGGLNQFGLTTNI 354
Query: 337 GFEG-----KLTKVQIWNRALDFTN 356
F G KLTK ++F
Sbjct: 355 RFRGCIRSLKLTKGTGKPLEVNFAK 379
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 38.1 bits (88), Expect = 0.006
Identities = 32/213 (15%), Positives = 52/213 (24%), Gaps = 37/213 (17%)
Query: 60 INDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNG--GSCVDMLDGF 117
I + + + + + + +G CQ + P +G S +
Sbjct: 159 ILECEEECMHCSGEN----YDGKISKTMSGLECQA---WDSQSPHAHGYIPSKFPNKNLK 211
Query: 118 MCQCR--------------PGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNK-FQCECN 162
CR P C DI C + P S T +CL + ++
Sbjct: 212 KNYCRNPDRELRPWCFTTDPNKRWELC--DIPRCTTPPPSSGPTYQCLKGTGENYRGNVA 269
Query: 163 VGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFT-CDCPPGWTGSRC----------EKD 211
V +G C+ C P G C
Sbjct: 270 VTVSGHTCQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHTTNSQVRWEYCK 329
Query: 212 IGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGR 244
I SC + P + + V G
Sbjct: 330 IPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGD 362
Score = 33.9 bits (77), Expect = 0.099
Identities = 27/201 (13%), Positives = 35/201 (17%), Gaps = 17/201 (8%)
Query: 17 CVSEDTQQADYHIVASIAYRANGAVANLCLKPTFISPTPLFPVINDTPNDSIPGTCTDLV 76
C Q H + N C P T + C
Sbjct: 277 CQHWSAQTPHTHNRTPENFPCKNLDENYCRNPDGKRAPWCHT----TNSQVRWEYCKI-- 330
Query: 77 GGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM--CQCRPGFVGLQCEADI 134
SC T + A DG G +C++
Sbjct: 331 --PSCDSSPVSTEQLAP-----TAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWS 383
Query: 135 DECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
L + C G C T + C N C A
Sbjct: 384 SMTPHRHQKTPENYPNAGLTMNY-CRNPDADKGPWCFTTDPSVRWEYC-NLKKCSGTEAS 441
Query: 195 FTCDCPPGWTGSRCEKDIGSC 215
P C
Sbjct: 442 VVAPPPVVLLPDVETPSEEDC 462
Score = 30.0 bits (67), Expect = 1.9
Identities = 19/142 (13%), Positives = 29/142 (20%), Gaps = 16/142 (11%)
Query: 81 CSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSD 140
C G C E C+ C P
Sbjct: 305 CRNPDGKRAPWCHTTNSQVRWEYCKIPS----------CDSSPVSTEQLAP-----TAPP 349
Query: 141 PCSPEGTDKCLDLDNKFQCECNVGYTGVMCET-NIDDCKSNPCLNGGICRDGVAKFTCDC 199
+P D ++ + TG C++ + + G+ C
Sbjct: 350 ELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQSWSSMTPHRHQKTPENYPNAGLTMNYCRN 409
Query: 200 PPGWTGSRCEKDIGSCTNMPCQ 221
P G C S C
Sbjct: 410 PDADKGPWCFTTDPSVRWEYCN 431
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 36.8 bits (85), Expect = 0.006
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYT 334
+ND +WH V +V +L L + A + G L ++ + G +
Sbjct: 83 NLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRL-EFHNIETGIITERRYLSSV 141
Query: 335 EAGFEGKLTKVQI 347
+ F G L +
Sbjct: 142 PSNFIGHLQSLTF 154
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 33.7 bits (77), Expect = 0.006
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 182 CLNGGIC----RDGVAKFTCDCPPGWTGSRCE 209
CLN C + ++C+C G+ G RCE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
Score = 30.3 bits (68), Expect = 0.13
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 104 CQNGGSC--VDMLDG--FMCQCRPGFVGLQCE 131
C N C V + D + C+C GF+G +CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCE 47
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 37.3 bits (86), Expect = 0.008
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 23/137 (16%)
Query: 177 CKSNPCLNGG---ICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDF 233
C +NG R A C + GS + Q
Sbjct: 168 CIGEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFE--GSGYAALVKEGYKVRLDLQIT 225
Query: 234 FCVSSHSVQGRRPLIQAHSSGVQVSLFPELQDAFLAFH---------------EYATIND 278
+ S G ++ SS ++ E+ D + FH + D
Sbjct: 226 LEFRTTSKNG---VLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCD 282
Query: 279 GQWHHVAIVWTQGTLTL 295
G+WH + ++ + L
Sbjct: 283 GKWHTLQAHKSKHRIVL 299
Score = 36.1 bits (83), Expect = 0.017
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLP-QYGWVVLGKPRPDNIKAY 333
++DG+WH V + + + +G + V G +L + + G P +
Sbjct: 99 LLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNI 158
Query: 334 TEA--GFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEP 369
+ ++ + + LD + D
Sbjct: 159 GTITHSIPACIGEIMVNGQQLDKDRPLSASAVDRCYVV 196
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 37.2 bits (85), Expect = 0.009
Identities = 25/147 (17%), Positives = 36/147 (24%), Gaps = 17/147 (11%)
Query: 72 CTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFM-----CQCRPGFV 126
L+G + + I C D D C C+
Sbjct: 236 LGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTC 295
Query: 127 GLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVG---YTGVMCETNIDDCKSNPCL 183
G C+ P P T + C + Y + + N
Sbjct: 296 GGSCDRCCPGFNQQPWKP-ATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQ 354
Query: 184 NGGICRDGVAKFTCDCPPGWTGSRCEK 210
GG+C DC TG CE+
Sbjct: 355 GGGVC--------LDCQHHTTGINCER 373
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.010
Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 42/136 (30%)
Query: 236 VSSHSVQGRRPLIQAHSSGVQVSLF-P--------ELQDAFLAFHEYATINDGQW----- 281
+ ++S RPL +H S ++ L P +LQ+ F T +G
Sbjct: 1 MDAYST---RPLTLSHGS-LEHVLLVPTASFFIASQLQEQFNKILPEPT--EGFAADDEP 54
Query: 282 -----------HHVAIVWTQGTLTLITEGLIAGKVE---NYGSGK-------SLPQYGWV 320
+V+ + + + L E Y G L Q
Sbjct: 55 TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 321 VLGKPRPDNIKAYTEA 336
L K + IK Y A
Sbjct: 115 TLVK-TKELIKNYITA 129
Score = 35.4 bits (81), Expect = 0.040
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 24/89 (26%)
Query: 346 QIWNRALDFTNE-----IQKQVRDCRTEPVLHTG-----------LVLTWTGYDDINGGV 389
+WNRA + + I V + +H G + + D
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKT 1703
Query: 390 ERVVPS---HCSQHICPPGYTGPECDQLT 415
E++ H + + + + L+
Sbjct: 1704 EKIFKEINEHSTSYT----FRSEK-GLLS 1727
Score = 33.5 bits (76), Expect = 0.15
Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 75/200 (37%)
Query: 227 IDLFQDF--FCVSSHSVQGRRP-----LIQA---HSSGVQVSLFPELQDAFLAFHEYATI 276
I + Q + V++ + G P ++ HS G+ ++ D++ +F
Sbjct: 241 IGVIQ-LAHYVVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-- 296
Query: 277 NDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEA 336
AI L I G+ E Y + SLP P ++ E
Sbjct: 297 ------RKAITV----LFFI--GV-RCY-EAYPN-TSLP-----------PSILEDSLEN 330
Query: 337 GFEGKLT---KVQIWNRALDFTNEIQKQVRDCRT----EPVLHTGLVLTWTGYDDINGGV 389
EG + + L ++Q V + + LV NG
Sbjct: 331 N-EGVPSPMLSI----SNLTQE-QVQDYVNKTNSHLPAGKQVEISLV---------NGAK 375
Query: 390 ERVVPSHCSQHICPPGYTGP 409
VV +GP
Sbjct: 376 NLVV-------------SGP 382
Score = 31.2 bits (70), Expect = 0.91
Identities = 48/237 (20%), Positives = 76/237 (32%), Gaps = 69/237 (29%)
Query: 120 QCRPGFVGLQCEADIDECLSD-PCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCK 178
Q + F + E D P +P +L KF +GY + E + +
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTP------AELVGKF-----LGYVSSLVEPS-KVGQ 79
Query: 179 SNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCT-NMPCQNDANCI---DLFQDFF 234
+ LN + F G DI + + +ND + +L +++
Sbjct: 80 FDQVLNLCLTE-----FENCYLEG-------NDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 235 ---CVSSHSVQGRRP--LIQAHSSGVQVSL-------------FPELQDAFLAFHEYATI 276
++ + L +A G L F EL+D L + Y +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRD--L-YQTYHVL 183
Query: 277 NDGQWHHVA--IVWTQGTL-TLITEGLIAGKVENYGSGKSLPQYGWVVLGKP--RPD 328
V I ++ TL LI L A KV + G L W L P PD
Sbjct: 184 -------VGDLIKFSAETLSELIRTTLDAEKV--FTQG--LNILEW--LENPSNTPD 227
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 35.7 bits (82), Expect = 0.014
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 275 TINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG--KPRPDNIKA 332
INDG+WH V + ++ +G + G ++ G V +G
Sbjct: 91 PINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGG 150
Query: 333 YTEAGFEGKLTKVQIWNRALDFTNE 357
+G G + + + +
Sbjct: 151 RFSSGITGCVKNLVLHSARPGAPPP 175
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 34.0 bits (77), Expect = 0.015
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 97 DDCASEPCQNGGSCVDMLDG-FMCQCRPGF--VGLQC-EADIDECLSDP--CSPEGT--- 147
C + C C LD C+C + G +C E C + C +
Sbjct: 5 HQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTE 64
Query: 148 DKCLDLDNKFQCECNVGYTG 167
+ K CEC +
Sbjct: 65 EDSGSNGKKITCECTKPDSY 84
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 35.2 bits (81), Expect = 0.017
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 274 ATINDGQWHHVAIVWTQGTLTL-ITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKA 332
A INDG++H V + G TL + + + +++G
Sbjct: 86 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ--- 142
Query: 333 YTEAGFEGKLTKVQIWN--RALDFTNEIQKQVR 363
F+G+L+ + N + L+ E +
Sbjct: 143 ----PFQGQLSGLYY-NGLKVLNMAAENDANIA 170
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 36.5 bits (83), Expect = 0.018
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 4/71 (5%)
Query: 158 QCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTN 217
+ T + I D + C G C G +C C W G C++ S
Sbjct: 517 PAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPT 572
Query: 218 MPCQNDANCID 228
N
Sbjct: 573 QLKDNFNRAPS 583
Score = 29.2 bits (64), Expect = 2.9
Identities = 8/69 (11%), Positives = 15/69 (21%), Gaps = 9/69 (13%)
Query: 158 QCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTN 217
C C+ + G+ C+ + N W K C
Sbjct: 551 SCVCDEQWGGLYCDEPETSLPTQLKDNFN---------RAPSNQNWLTVSGGKLSTVCGA 601
Query: 218 MPCQNDANC 226
+ +
Sbjct: 602 VASGLALHF 610
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 35.5 bits (81), Expect = 0.025
Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 96 IDDCASEPCQNGGSCV--DMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDL 153
C S + D MC C+ G+ CE + P +
Sbjct: 249 FAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESA--- 305
Query: 154 DNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEK 210
C+CN G E D +GG C +C G++CE+
Sbjct: 306 SECLPCDCN----GRSQECYFDPELYRSTGHGGHC--------TNCRDNTDGAKCER 350
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 35.2 bits (80), Expect = 0.033
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 19/135 (14%)
Query: 101 SEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCE 160
+ Q G C + + +C + + G + + QCE
Sbjct: 130 THRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIR----ALGFTDIVTVQVLPQCE 185
Query: 161 CNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPC 220
C + C G G+ C C G+ G CE +
Sbjct: 186 CRCRDQS---------RDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRS--SQ 230
Query: 221 QNDANCIDLFQDFFC 235
+ + +C C
Sbjct: 231 ELEGSCRKDNNSIIC 245
Score = 28.7 bits (63), Expect = 3.2
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 25/98 (25%)
Query: 91 HCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADID----ECLSDPCSPEG 146
C+ C G + +C+C G++G CE + L C +
Sbjct: 185 ECRCRDQSRDRSLCHGKGFL----ECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDN 240
Query: 147 TD-------KCLDLDNKFQCECNVG------YTGVMCE 171
C+ QC C+ G CE
Sbjct: 241 NSIICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCE 274
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 33.6 bits (77), Expect = 0.046
Identities = 28/145 (19%), Positives = 41/145 (28%), Gaps = 37/145 (25%)
Query: 103 PCQNGGSCV---DMLDGFMCQCRPGFVGLQCE--------------ADIDECLSDPCSPE 145
PC G SC + C G G +CE + C C+
Sbjct: 2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN 61
Query: 146 GTDKCLDLDNKF--QC-ECNVGYTGVMCE-------------TNIDDCKSNPCLNGGICR 189
+ N+ +C +C G C+ D CK+ C G +
Sbjct: 62 IDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQ 121
Query: 190 DGVA--KFT--CDCPPGWTGSRCEK 210
+ T C C P +G C
Sbjct: 122 QQSSCNPVTGQCQCLPHVSGRDCGT 146
Score = 27.1 bits (60), Expect = 7.1
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 20/89 (22%)
Query: 61 NDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQH-------------LIDDCASEPCQNG 107
ND + + G C + + G C G +C D C + C
Sbjct: 59 NDNIDPNAVGNC-NRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPY 117
Query: 108 GSCV-----DMLDGFMCQCRPGFVGLQCE 131
G+ + + G CQC P G C
Sbjct: 118 GTVQQQSSCNPVTGQ-CQCLPHVSGRDCG 145
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 34.6 bits (80), Expect = 0.047
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 186 GICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQ--NDANC 226
GI + GV + W + + + + P + NDA+
Sbjct: 84 GIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVINDADA 126
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 32.8 bits (74), Expect = 0.050
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 97 DDCASEPCQNGGSCVDMLDG-FMCQCRPGF--VGLQCEADIDECLSDP--CSPEGTDKCL 151
C +C LDG +C GF VG +C C + C+PE C
Sbjct: 11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAE--CT 68
Query: 152 DLD-NKFQCECNVGYTG 167
D + +C+C +
Sbjct: 69 MDDKKEVECKCTKEGSE 85
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain,
repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1
Length = 45
Score = 31.2 bits (70), Expect = 0.051
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CLNGG+ + + +TC+C G++G RC+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
Score = 25.4 bits (55), Expect = 5.7
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 104 CQNGGSC--VDMLDGFMCQCRPGFVGLQCE 131
C NGG ++ LD + C C G+ G +C+
Sbjct: 11 CLNGGVXMHIESLDSYTCNCVIGYSGDRCQ 40
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 33.8 bits (77), Expect = 0.053
Identities = 27/135 (20%), Positives = 39/135 (28%), Gaps = 12/135 (8%)
Query: 97 DDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLD-- 154
+ ++ C N C G+ C + G C+ S G C +
Sbjct: 5 EQGSNMECPNNLCCSQ--YGY-CGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCC 61
Query: 155 -NKFQCECNVGYTGVMCETNI--DDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKD 211
C Y G C+ D K G +C + C G+ G E
Sbjct: 62 SQYGYCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNN----LCCSQWGFCGLGSEFC 117
Query: 212 IGSCTNMPCQNDANC 226
G C + C D C
Sbjct: 118 GGGCQSGACSTDKPC 132
Score = 31.5 bits (71), Expect = 0.31
Identities = 25/149 (16%), Positives = 38/149 (25%), Gaps = 21/149 (14%)
Query: 80 SCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGF-----MCQCRPGFVGLQCEADI 134
C + GK CQ+ + G + C + G C+
Sbjct: 23 YCGMGGDYCGKGCQNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGP 82
Query: 135 DECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
S G C + C G+ G+ E C+S C C
Sbjct: 83 CRADIKCGSQAGGKLCPN----NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGG 138
Query: 195 FTCD------------CPPGWTGSRCEKD 211
C PG+ G+ C+
Sbjct: 139 RVCTNNYCCSKWGSCGIGPGYCGAGCQSG 167
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A
{Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A
1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A*
1yxw_A* 1yyn_A* 1diw_A*
Length = 452
Score = 34.6 bits (78), Expect = 0.066
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 273 YATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKA 332
+ +W + I + + + I G + + G + +
Sbjct: 160 FNAYLANKWVFITITNDRLSSANLY---INGVLMG---SAEITGLGAIREDNNITLKLDR 213
Query: 333 YTEAGFEGKLTKVQIWNRALDFTNEIQK 360
+ K +I+ +AL+ EI+K
Sbjct: 214 CNNNNQYVSIDKFRIFCKALN-PKEIEK 240
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 33.6 bits (76), Expect = 0.094
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 71 TCTDLVGGFSCSCDLGFT--GKHCQHLIDDCASEPCQNGGSC 110
C D GF C C +T G+ C P + G
Sbjct: 20 ECRDYATGFCCRCVANYTGNGRQCV-----AEGSPQRVNGKV 56
Score = 33.2 bits (75), Expect = 0.13
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 97 DDCAS--EPCQNGGSCVDMLDGFMCQCRPGFV--GLQCEADID-ECLSDPCSPEGTDKCL 151
CA+ C C D GF C+C + G QC A+ + ++
Sbjct: 6 QTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSS 65
Query: 152 DLDNKFQCECNVGYTGV---MCETNIDDCKSN--PCLNGGICRDGVAKFTCDCPPG 202
+ F+ Y + T I L G+ +
Sbjct: 66 QVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQD 121
Score = 29.7 bits (66), Expect = 1.8
Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 11/101 (10%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGS--RCE-KDIGSCTNMPCQNDANC 226
C N C + CRD F C C +TG+ +C + N +
Sbjct: 8 CANNRHQCSVH-----AECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFV 62
Query: 227 IDLFQD--FFCVSSHS-VQGRRPLIQAHSSGVQVSLFPELQ 264
F HS V S + ++ L
Sbjct: 63 GSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETVGYSLL 103
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 33.8 bits (77), Expect = 0.095
Identities = 15/76 (19%), Positives = 19/76 (25%)
Query: 135 DECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAK 194
C CS G K N + L+ +
Sbjct: 337 LLCSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVE 396
Query: 195 FTCDCPPGWTGSRCEK 210
F C C PGW CE+
Sbjct: 397 FKCRCYPGWQAPWCER 412
Score = 31.5 bits (71), Expect = 0.47
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 102 EPCQNGGSCVDMLDGFMCQCRPGFVGLQCE 131
+ M F C+C PG+ CE
Sbjct: 382 RGALSLEDQAQMAVEFKCRCYPGWQAPWCE 411
Score = 29.6 bits (66), Expect = 2.3
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 69 PGTCTDLVGGFSCSCDLGFTGKHCQH 94
+ F C C G+ C+
Sbjct: 387 LEDQAQMAVEFKCRCYPGWQAPWCER 412
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 33.2 bits (75), Expect = 0.12
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 275 TINDGQWHHVAIVWTQGTLTL 295
INDG++H V + G TL
Sbjct: 93 IINDGKYHVVRFTRSGGNATL 113
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 30.2 bits (67), Expect = 0.14
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 137 CLSDPCSPEGTDKCLDLDNKFQCECNVGY 165
C S+PC PE C + ++ + C CN GY
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Score = 29.0 bits (64), Expect = 0.41
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 99 CASEPC--QNGGSCVDMLDGFMCQCRPGF 125
C+S PC + G+C + G++C+C G+
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
Score = 27.9 bits (61), Expect = 0.94
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 177 CKSNPC--LNGGICRDGVAKFTCDCPPGW 203
C SNPC G C++ + + C C G+
Sbjct: 14 CSSNPCGPEAAGTCKETNSGYICRCNQGY 42
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 31.2 bits (70), Expect = 0.14
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 14/91 (15%)
Query: 97 DDCASEPCQNGGSCVDMLDG-FMCQCRPGF--VGLQC-EADIDECLSD--PCSPEGTDKC 150
C +C LDG +C F +C A C C+PE C
Sbjct: 5 HRCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAE--C 62
Query: 151 -LDLDNKFQCECNVGYT-----GVMCETNID 175
++ N+ C+C + GV C +
Sbjct: 63 KMNDKNEIVCKCTKEGSEPLFEGVFCSHHHH 93
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A
{Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A*
3d3d_A*
Length = 158
Score = 32.0 bits (72), Expect = 0.17
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 22/90 (24%)
Query: 261 PELQDAFLAFHEYATINDGQWHHVAIVWTQ--GTLTLITEGLIAGKVEN-YGSGKSLPQY 317
P+ QDA VA+ + G L +I G I ++ SLP
Sbjct: 88 PKSQDA-----------------VALQQIKERGALPMIDRGDIRQAIDRCSNIXASLPGA 130
Query: 318 GWVVLGKPRPDNIKAYTEAGFEGKLTKVQI 347
G+ I + EAG G + ++ +
Sbjct: 131 GYGQFEHKADSLIAKFKEAG--GTVREIDV 158
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 30.6 bits (69), Expect = 0.19
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 341 KLTKVQIWNRALDFTNEIQKQVRDCRTE 368
+ T + + +A +++ R +
Sbjct: 35 RHTTLSLLTKAKLHIKKLEDSDRKAVHQ 62
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 29.4 bits (66), Expect = 0.20
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 70 GTCTDLVG--GFSCSCDLGFTGKHCQHLI 96
G C LV C C++G+TG C+H
Sbjct: 17 GQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45
Score = 28.6 bits (64), Expect = 0.44
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
CL+G C +++ C C G+TG RCE
Sbjct: 14 CLHGQ-CIYLVDMSQNYCRCEVGYTGVRCE 42
Score = 25.6 bits (56), Expect = 5.4
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 141 PCSPEGTDKCL--------DLDNKFQCECNVGYTGVMCE 171
CS + CL D+ + C C VGYTGV CE
Sbjct: 5 KCSSDMNGYCLHGQCIYLVDMS-QNYCRCEVGYTGVRCE 42
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding
protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A
1z78_A
Length = 209
Score = 32.4 bits (73), Expect = 0.20
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 236 VSSHSVQGRRPLIQAHSSGVQVSL-----FPELQDAFLAFHEYATINDGQWHHVAIVWTQ 290
++ + S+G +L Q A + GQW + + +
Sbjct: 81 LALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEE--ALLATGQWKSITLFVQE 138
Query: 291 GTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEAGFEGKLTKVQI 347
L + E +S+ + + R K F+G L V+
Sbjct: 139 DRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLR--IAKGGVNDNFQGVLQNVRF 193
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 30.1 bits (67), Expect = 0.24
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 68 IPGTCTDLV--GGFSCSCDLGFTGKHCQHL 95
I G C + SC C G+ G+ C L
Sbjct: 49 IHGECKYVKELRAPSCICHPGYHGERCHGL 78
Score = 30.1 bits (67), Expect = 0.24
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCE 209
C++G C+ + +C C PG+ G RC
Sbjct: 48 CIHG-ECKYVKELRAPSCICHPGYHGERCH 76
Score = 26.6 bits (58), Expect = 4.0
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 131 EADIDECLSDPCSPEGTDKCL--------DLDNKFQCECNVGYTGVMCE 171
+ DPC + D C+ +L C C+ GY G C
Sbjct: 29 KGKGLGKKRDPCLRKYKDFCIHGECKYVKELRAPS-CICHPGYHGERCH 76
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 31.8 bits (72), Expect = 0.25
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 86 GFTGKHCQHLIDDCASEPCQNGG---SCVDMLDGFMCQCRPGFVGLQCEADI-DECL 138
GF + ID+C P + C + L GF C CR G+V + + ++ L
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQSL 170
Score = 31.4 bits (71), Expect = 0.27
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 164 GYTGVMCETNIDDCKSNPCLNGG---ICRDGVAKFTCDCPPGWTGSRCEKD 211
G+ +ID+C+ P C + + F C C G+ R ++
Sbjct: 114 GFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT 164
Score = 31.1 bits (70), Expect = 0.43
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 123 PGFVGLQCEADIDECLSDPCSPEGTD-KCLDLDNKFQCECNVGYTGVMCETNIDD 176
GF DIDEC P D C + F C C GY + +
Sbjct: 113 TGFEAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 29.1 bits (65), Expect = 1.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 61 NDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQH 94
+ C + +GGF CSC G+ +
Sbjct: 130 APGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR 163
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease,
polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB:
1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 29.4 bits (66), Expect = 0.25
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 70 GTCTDLVG--GFSCSCDLGFTGKHCQHL 95
GTC LV +C C G+ G C+H
Sbjct: 19 GTCRFLVQEDKPACVCHSGYVGARCEHA 46
Score = 28.6 bits (64), Expect = 0.41
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCEK 210
C +G CR K C C G+ G+RCE
Sbjct: 16 CFHG-TCRFLVQEDKPACVCHSGYVGARCEH 45
Score = 25.5 bits (56), Expect = 5.6
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 140 DPCSPEGTDKCL--------DLDNKFQCECNVGYTGVMCE 171
+ C T C D K C C+ GY G CE
Sbjct: 6 NDCPDSHTQFCFHGTCRFLVQED-KPACVCHSGYVGARCE 44
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 32.5 bits (73), Expect = 0.26
Identities = 28/176 (15%), Positives = 44/176 (25%), Gaps = 21/176 (11%)
Query: 78 GFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDEC 137
G C +I+ E C C + C+ + EC
Sbjct: 156 GDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKV---CPTICKSHGCTAEGLCCHSEC 212
Query: 138 LSDPCSPEGTDKCLD-----LDNKFQCECNVGY--TGVMCETNIDDCKSNPCLNGGICRD 190
L + P+ KC+ LD + C Y N C+ R
Sbjct: 213 LGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQ 272
Query: 191 GVAKFTCD-------CPPGWT----GSRCEKDIGSCTNMPCQNDANCIDLFQDFFC 235
G ++ CP G+T C +G C + +
Sbjct: 273 GCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 32.3 bits (72), Expect = 0.27
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 157 FQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCT 216
+ NV G+ + C + C G C GV C C G+T ++
Sbjct: 174 SSSQKNVPPFGLDGVYISEPC-PSYCSGHGDCISGV----CFCDLGYTAAQGT------C 222
Query: 217 NMPCQNDANCIDLFQDFFCVSSHSVQGRRPLIQAHSSGVQVSLF 260
N + D F+ + + G + + SL+
Sbjct: 223 VSNTPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLY 266
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 31.9 bits (72), Expect = 0.29
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 275 TINDGQWHHVAIVWTQGTLTL-ITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAY 333
INDG++H V + G TL + + + +++G
Sbjct: 121 IINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ---- 176
Query: 334 TEAGFEGKLTKVQI 347
F+G+L+ +
Sbjct: 177 ---PFQGQLSGLYY 187
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural
protein, NC4, collagen IX, polymorphism, extracellular
matrix; 1.8A {Homo sapiens}
Length = 245
Score = 31.7 bits (71), Expect = 0.34
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 269 AFHEYATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPD 328
AF +++ D QWH + I + + TL + + G + G+ VLGK +
Sbjct: 145 AFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKPRG-PIDIDGFAVLGKLADN 203
Query: 329 NIKAYTEAGFEGKLTKVQIWNRALDFTNEIQKQVRDCRTEP 369
+ +L + I L E ++ T
Sbjct: 204 P-----QVSVPFELQWMLIHCDPLRPRRETCHELPARITPS 239
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 32.1 bits (72), Expect = 0.35
Identities = 27/169 (15%), Positives = 42/169 (24%), Gaps = 29/169 (17%)
Query: 78 GFSCSCDLGF--------TGKHCQHLIDDCASEPCQNGGS-------CVDMLDGFMCQCR 122
G+ + G C+ C C + C D D C
Sbjct: 2 GWKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCL 61
Query: 123 PGFVG---LQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKS 179
C ++ C+ +G C + ++ C C + C
Sbjct: 62 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKT------CSQDEFRCHD 115
Query: 180 NPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANCID 228
C I R V DC G + C + C + CI
Sbjct: 116 GKC----ISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST-CIP 159
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein,
progenitor toxin complex, VHH bound interlocked complex;
HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Length = 1196
Score = 32.1 bits (72), Expect = 0.37
Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 276 INDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTE 335
+++ WH++ I+ + ++ + + + NI +
Sbjct: 960 VSNNSWHYIT----------ISVDRLKEQLLIFIDDNLVANESIKEILNIYSSNIISLLS 1009
Query: 336 AGFEGKLTKVQIWNRALDFTNEIQK 360
+ + I N+ + E+
Sbjct: 1010 ENNPSYIEGLTILNKPTT-SQEVLS 1033
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 28.6 bits (64), Expect = 0.38
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 182 CLNGGICR--DGVAKFTCDCPPGWTGSRCEK 210
C+ G CR +C C G+ G+RCE+
Sbjct: 16 CIKG-RCRFVVAEQTPSCVCDEGYIGARCER 45
Score = 28.2 bits (63), Expect = 0.58
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 70 GTCTDLVG--GFSCSCDLGFTGKHCQHL 95
G C +V SC CD G+ G C+ +
Sbjct: 19 GRCRFVVAEQTPSCVCDEGYIGARCERV 46
Score = 25.1 bits (55), Expect = 7.3
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 9/39 (23%)
Query: 141 PCSPEGTDKCL--------DLDNKFQCECNVGYTGVMCE 171
C + C+ C C+ GY G CE
Sbjct: 7 RCPKQYKHYCIKGRCRFVVAEQTPS-CVCDEGYIGARCE 44
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET:
SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A
2ouj_A
Length = 251
Score = 31.7 bits (71), Expect = 0.40
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 7/116 (6%)
Query: 236 VSSHSVQGRRPLIQAHSSG----VQVSLFPELQDAFLAFHEYATINDGQWHHVAIVWTQG 291
++ + S+G + +SL + + ++ E + GQW + + +
Sbjct: 91 LALERKDHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEAL-LATGQWKSITLFVQED 149
Query: 292 TLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIKAYTEAGFEGKLTKVQI 347
L + E +S+ + + R K F+G L V+
Sbjct: 150 RAQLYIDCEKMENAELDVPIQSVFTRDLASIARLR--IAKGGVNDNFQGVLQNVRF 203
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 31.7 bits (72), Expect = 0.42
Identities = 18/129 (13%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 102 EPCQNGGSCVDMLDGFMCQCRPGFV----GLQCEADIDECLSDPCSPEGTDKCLDLDNKF 157
+ Q D F+ C+ G+ + C D +C D
Sbjct: 16 QNLQPQYQF---RDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQ 72
Query: 158 QCECNVGYTGVMCETNIDDCKS---NPC--------LNGGICRDGVAKFTCDCPPGWTGS 206
G ++ K+ C G +TC W
Sbjct: 73 PRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNE 132
Query: 207 RCEKDIGSC 215
+ + I C
Sbjct: 133 QKGEKIPRC 141
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 31.8 bits (72), Expect = 0.46
Identities = 29/176 (16%), Positives = 45/176 (25%), Gaps = 25/176 (14%)
Query: 57 FPVINDTPNDSIPGTCTDLVGGFSCS---CDLGFTGKHCQHLIDDCASEPCQNGGSCVDM 113
++ + + C G S C FT + D A C + M
Sbjct: 153 LSDLSINSTECLHVHC----RGLETSLAECT--FTKRRT-MGYQDFADVVCYTQKADSPM 205
Query: 114 LDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTD--KCLDLDNK-FQCECNVGYTGVMC 170
D F C ++ I++C + +D C K F C+ V C
Sbjct: 206 DDFFQCVNGKYISQMKACDGINDC------GDQSDELCCKACQGKGFHCKSGV------C 253
Query: 171 ETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
+ C G G A F + D +C
Sbjct: 254 IPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSC 309
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 30.3 bits (67), Expect = 0.52
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 177 CKSNPCLNGGICRD---GVAKFTCDCPPGWTGSRCEKD 211
+ CLNGG C C+CP + G CE D
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEID 47
Score = 28.0 bits (61), Expect = 3.3
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 99 CASEPCQNGGSCVDML---DGFMCQCRPGFVGLQCEADIDEC 137
++ C NGG+CV + C C F G CE D +
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKT 51
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 31.2 bits (71), Expect = 0.59
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 175 DDCKSNPCLNGG---ICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQN 222
++C +P G C G +TC C G+ K C
Sbjct: 3 NEC--HPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 51
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation
factor domain, heparin binding domain, angiogene protein
binding-cytokine complex; 2.65A {Homo sapiens} PDB:
1kmx_A 1vgh_A 2vgh_A
Length = 218
Score = 30.4 bits (68), Expect = 0.81
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQ 221
+ + PC TC C T SRC+ C+
Sbjct: 161 VDGSGSGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCR 212
Score = 30.0 bits (67), Expect = 1.1
Identities = 9/52 (17%), Positives = 14/52 (26%)
Query: 92 CQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCS 143
PC + + D C+C +C+A E C
Sbjct: 161 VDGSGSGSPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCR 212
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.88
Identities = 46/304 (15%), Positives = 74/304 (24%), Gaps = 111/304 (36%)
Query: 208 CEKDIGSCTNMPCQNDANCIDLFQDF------------FCVSSHSVQGRRPLI----QAH 251
KDI S ++ +C D+ QD +S +V G L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDV-QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 252 SSGVQVSLFPELQD--AFL--AFHE-----------YATINDGQWHHVAI-----VWTQG 291
VQ + L+ FL Y D ++ + V
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 292 TLTLITEGLIAGKVENY-------GSGKS------LPQYG----------WVVLGK---- 324
+ + L+ + GSGK+ Y W+ L
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 325 -------------------PRPD---NIKAYTEAGFEGK--LTKVQIWNRALDFTNEIQ- 359
R D NIK + L K + + L +Q
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255
Query: 360 KQVRD-----CRTEPVLHTGLVLTWTGYDDINGGVERVVPSHCSQHIC----PPGYTGPE 410
+ + C+ L+ T V + + + HI T E
Sbjct: 256 AKAWNAFNLSCKI-------LLTTR------FKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 411 CDQL 414
L
Sbjct: 303 VKSL 306
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site,
GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum}
PDB: 3fuq_A
Length = 413
Score = 30.3 bits (67), Expect = 1.1
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 272 EYATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLGKPRPDNIK 331
+ +W V I + + I Y +G + + LG +
Sbjct: 134 ISISDYINKWIFVTITNNRLGNSRI-----------YINGNLIDEKSISNLGDIHVSDNI 182
Query: 332 AYTEAG----FEGKLTKVQIWNRALDFTNEIQK 360
+ G + ++++ L EI+
Sbjct: 183 LFKIVGCNDTRYVGIRYFKVFDTELG-KTEIET 214
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 105 QNGG---SCVDMLDGFMCQCRPGFV----GLQCEADIDECLSDPC 142
NG C + + +C C G+ G C PC
Sbjct: 7 DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI-PTGPY---PC 47
Score = 25.0 bits (55), Expect = 8.4
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 71 TCTDLVGGFSCSCDLGFT----GKHCQ 93
C + CSC G+T GK C
Sbjct: 14 FCHEEQNSVVCSCARGYTLADNGKACI 40
>3n7l_A Neurotoxin; HCR/D-SA, ganglioside binding loop; 2.00A {Clostridium
botulinum} PDB: 3azw_A 3azv_A 3n7m_A 3n7k_A 3r4s_A*
3r4u_A
Length = 424
Score = 30.3 bits (67), Expect = 1.2
Identities = 12/93 (12%), Positives = 21/93 (22%), Gaps = 13/93 (13%)
Query: 275 TINDGQWHHVAIVW-TQGTLT------LITEGLIAGKVENYGSGKSLPQYGWVVLGKPRP 327
+W V I G + LI + S + K
Sbjct: 136 AAGYNKWFFVTITTNMMGNMMIYINGKLIDTIKVKELTGINFSKTIT-----FQMNKIPN 190
Query: 328 DNIKAYTEAGFEGKLTKVQIWNRALDFTNEIQK 360
+ + I+ + LD +I
Sbjct: 191 TGLITSDSDNINMWIRDFYIFAKELD-DKDINI 222
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 30.4 bits (68), Expect = 1.2
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC 215
+ C CL KFTC CP G + +D+ SC
Sbjct: 273 TTLSNGGC-QYLCLPAPQINPHSPKFTCACPDGMLLA---RDMRSC 314
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.3 bits (67), Expect = 1.2
Identities = 14/115 (12%), Positives = 25/115 (21%), Gaps = 8/115 (6%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCET---NID 175
+C + CLS + +N C C
Sbjct: 15 SLSAGSVQRARCASR---CLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKESG 71
Query: 176 DCKSNPCLNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSC--TNMPCQNDANCID 228
D + + C + + C + G C A C++
Sbjct: 72 DLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVE 126
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease;
NMR {Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 27.4 bits (61), Expect = 1.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 71 TCTDLVGGFSCSCDLGFT----GKHCQ 93
C + VGG+ CSC G+ CQ
Sbjct: 25 LCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 24.7 bits (54), Expect = 10.0
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 133 DIDECLSDPCSPEGTDK------CLDLDNKFQCECNVGYT 166
D+DEC S S E + C + + C C GY
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase,
apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus
atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Length = 419
Score = 30.0 bits (67), Expect = 1.4
Identities = 28/138 (20%), Positives = 44/138 (31%), Gaps = 22/138 (15%)
Query: 107 GGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYT 166
G ++ G C C G + C + C + +C D QC+ + +
Sbjct: 215 GNELLE--VGEECDC-----GTPENCQNECCDAATCKLKSGSQCGHGDCCEQCKFS--KS 265
Query: 167 GVMCETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT---GSRCEKDIGSCTNMPCQN- 222
G C ++ +C G + +CP G C + G C N C
Sbjct: 266 GTECRASMSECDPAEHCTGQ---------SSECPADVFHKNGQPCLDNYGYCYNGNCPIM 316
Query: 223 DANCIDLFQDFFCVSSHS 240
C DLF + S
Sbjct: 317 YHQCYDLFGADVYEAEDS 334
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 29.9 bits (67), Expect = 1.7
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 141 PCSPEGTDKC--LDLDNKFQCECNVGYTGVMCETNIDDCKSN 180
CS G + + +CECN YTG C I C ++
Sbjct: 19 NCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSAD 60
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 29.7 bits (66), Expect = 2.0
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 170 CETNIDDCKSNPCLNGGICRDGVAKFTCDCPPGWT----GSRCEKDIGSCTN 217
TN + C + + + C CP G G C+ D S +
Sbjct: 265 NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCK-DGNSHHH 315
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 28.3 bits (62), Expect = 2.2
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 182 CLNGGICRD---GVAKFTCDCPPGWTGSRCEKDIGSCT 216
CLNGG C C+CP + G CE D
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTC 40
Score = 27.9 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 104 CQNGGSCVDML---DGFMCQCRPGFVGLQCEADIDEC 137
C NGG+CV + C C F G CE D +
Sbjct: 3 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKT 39
>2gh0_A GFR-alpha-3, GDNF family receptor alpha-3; cystine-knot, helix
bundle, hormone-growth factor complex; HET: NAG BMA MAN;
1.92A {Homo sapiens}
Length = 213
Score = 29.0 bits (64), Expect = 2.4
Identities = 27/113 (23%), Positives = 34/113 (30%), Gaps = 12/113 (10%)
Query: 82 SCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSDP 141
+C L +C L C S+P C L F C P + C + CL
Sbjct: 88 NCALPPVAPNCLELRRLCFSDP-----LCRSRLVDFQTHCHPMDILGTCATEQSRCLRAY 142
Query: 142 CSPEGTD------KCLDLDNKFQCEC-NVGYTGVMCETNIDDCKSNPCLNGGI 187
GT ++ C C G CE NPCL I
Sbjct: 143 LGLIGTAMTPNFVSNVNTSVALSCTCRGSGNLQEECEMLEGFFSHNPCLTEAI 195
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe
disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus
musculus} PDB: 3zr6_A*
Length = 656
Score = 29.5 bits (65), Expect = 2.7
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 274 ATINDGQWHHVAIVWTQGTLTLITEGLIAGKVENYGSGKSLPQYGWVVLG 323
A + +W+ + + G++ G + P +GW +G
Sbjct: 593 ADVTAKRWYTLTLGIKGYFAF----GMLNGTILWKNVRVKYPGHGWAAIG 638
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 26.0 bits (57), Expect = 3.3
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 178 KSNPCLNG-------GICR--DGVAKFTCDCPPGWTGSRCEK 210
K NPC G C+ + + TC C + G RC +
Sbjct: 8 KKNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGE 49
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 29.0 bits (64), Expect = 3.8
Identities = 21/149 (14%), Positives = 41/149 (27%), Gaps = 8/149 (5%)
Query: 83 CDLGFTGKHCQHLIDDCASEPCQNGGSCVDML---DGFMCQCRPGFVGLQCEADIDECLS 139
C ++C C +G +C+ D C+ + C
Sbjct: 201 CKDKSDEENCAVATCRPDEFQCSDG-NCIHGSRQCDR-EYDCKDMSDEVGCVNVTLCEGP 258
Query: 140 DPCSPEGTDKCLDLDNK--FQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKFTC 197
+ + +C+ LD +C + E ++C N +C D + C
Sbjct: 259 NKFKC-HSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYEC 317
Query: 198 DCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
CP G+ + +
Sbjct: 318 LCPDGFQLVAQRRCEDIDECQDPDTCSQL 346
Score = 29.0 bits (64), Expect = 3.8
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 17/132 (12%)
Query: 69 PGTCTDLVGGFSCS----------------CDLGFTGKHCQHLIDDCASEPCQNGGSCVD 112
T + F C C + ++C C D
Sbjct: 251 NVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCND 310
Query: 113 MLDGFMCQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCET 172
+ G+ C C GF + D + C++L+ ++C+C G+
Sbjct: 311 LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC-SQLCVNLEGGYKCQCEEGFQLDPHTK 369
Query: 173 NIDDCKSNPCLN 184
S L
Sbjct: 370 ACKAVGSIAYLF 381
>3fgr_A Putative phospholipase B-like 2 28 kDa form; alpha beta,
glycosylated, disulphide bonds, N-terminal nucle
hydrolase fold, two chain form; HET: NAG; 1.80A {Mus
musculus} PDB: 3fgt_A*
Length = 202
Score = 28.1 bits (62), Expect = 3.9
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 313 SLPQYGWVVL----GKPRPDNIKAYTEAGFEGKLTKVQIWN 349
++ + GW L D+++AY E +++ I+
Sbjct: 51 AIRETGWAYLDLSTNGRYNDSLQAYAAGVVEASVSEELIYM 91
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 29.0 bits (63), Expect = 4.5
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 121 CRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGY 165
G + C D C + C T+K + L+++ C G
Sbjct: 1495 KEDGMLSKLCHKDTCRCAEENCFMHHTEKEVTLEDRLDKACEPGV 1539
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 28.1 bits (62), Expect = 5.6
Identities = 19/139 (13%), Positives = 26/139 (18%), Gaps = 14/139 (10%)
Query: 81 CSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVGLQCEADIDECLSD 140
C+ G C +D CA C + + P G C
Sbjct: 236 CNLTFGPEYSVCPG-MDVCARLWCAVVRQG---QMVCLTKKLPAVEGTPCGKGRICLQGK 291
Query: 141 PCSPEGTDKCLDLDNKFQCECNV-GYTGVMCETNI----DDCKSNPCLNGGICRDGVAKF 195
+ G C + C + N G G
Sbjct: 292 CVDKTKKKYYSTSSHGNWGSWGSWGQCSRSCGGGVQFAYRHCNNPAPRNNGRYCTGKRAI 351
Query: 196 -----TCDCPPGWTGSRCE 209
CPP
Sbjct: 352 YRSCSLMPCPPNGKSFGSA 370
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 25.4 bits (56), Expect = 6.6
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 72 CTDLVGGFSCSCDLGFT----GKHCQ 93
C + CSC G+ K C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCV 37
Score = 25.0 bits (55), Expect = 8.3
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 11/45 (24%)
Query: 105 QNGG---SCVDMLDGFMCQCRPGFV----GLQCEADIDECLSDPC 142
NGG C + C C G+V C + PC
Sbjct: 4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCV-STERF---PC 44
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 27.1 bits (60), Expect = 7.0
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 86 GFTGKHCQHLIDDCASEPCQN-GGSCVDMLDGFMCQCRPGFV 126
GF + I++C C + + G+ C C P +
Sbjct: 107 GFAAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYF 148
Score = 26.7 bits (59), Expect = 9.8
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 124 GFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSN 180
GF DI+EC P + C + + C C Y + + ++ +C N
Sbjct: 107 GFAAYYVATDINECTDFVDVP-CSHFCNNFIGGYFCSCPPEYF--LHD-DMKNCGVN 159
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 27.9 bits (61), Expect = 7.2
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 4/68 (5%)
Query: 72 CTDLVGGFSCSCDLGF----TGKHCQHLIDDCASEPCQNGGSCVDMLDGFMCQCRPGFVG 127
CT+ G F C C+ G+ + C+ L + + +
Sbjct: 14 CTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLE 73
Query: 128 LQCEADID 135
D
Sbjct: 74 NAIALDFH 81
Score = 27.9 bits (61), Expect = 7.4
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 9/98 (9%)
Query: 134 IDECLSDP-CSPEGTDKCLDLDNKFQCECNVGY----TGVMCETNIDDCKSNPCLNGGIC 188
++EC + CS C + + FQC C GY C+ + I
Sbjct: 1 VNECAEEGYCS----QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIR 56
Query: 189 RDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQNDANC 226
+ + + D + +D
Sbjct: 57 QVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTL 94
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated,
disulphide bonds, oxidized cystein glycoprotein,
hydrolase, lipid degradation, lysosome; HET: NAG PG4
PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Length = 559
Score = 27.9 bits (61), Expect = 8.1
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 313 SLPQYGWVVL---GKPR-PDNIKAYTEAGFEGKLTKVQIWN 349
++ + GW L R D+++AY E +++ I+
Sbjct: 51 AIRETGWAYLDLSTNGRYNDSLQAYAAGVVEASVSEELIYM 91
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2,
NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch
repeat, CY rich, HD domain; 2.00A {Homo sapiens}
Length = 234
Score = 27.5 bits (60), Expect = 8.6
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 81 CSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDML---DGFMCQCRPGFVGLQCEADIDEC 137
CD CQ DC+ +C L D QC ++C D EC
Sbjct: 16 GVCDEACNSHACQWDGGDCSLTMENPWANCSSPLPCWDYINNQCDELCNTVECLFDNFEC 75
Query: 138 LSDPCSPEGTDKCLDLDNKFQC--ECNV---GYTGVMCETNIDDCKSNPCL 183
+ + + C D C CN G+ G+ C + + + L
Sbjct: 76 QGNSKTCKYDKYCADHFKDNHCNQGCNSEECGWDGLDCAADQPENLAEGTL 126
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 27.7 bits (61), Expect = 9.0
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 119 CQCRPGFVGLQCEADIDECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCK 178
C C G C + C + +C + +QC+ G +C D+C
Sbjct: 227 CDC-----GSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIK--TAGTVCRRARDECD 279
Query: 179 SNPCLNGGICRDGVAKFTCDCPPGWT---GSRCEKDIGSCTNMPCQN-DANCIDLFQDFF 234
G + +CP G C+ + G C N C CI LF
Sbjct: 280 VPEHCTGQ---------SAECPRDQLQQNGKPCQNNRGYCYNGDCPIMRNQCISLFGSRA 330
Query: 235 CVSSHS 240
V+ S
Sbjct: 331 NVAKDS 336
>1nl1_A Prothrombin; hydrolase; HET: CGU NAG; 1.90A {Bos taurus} SCOP:
g.14.1.1 g.32.1.1 PDB: 2pf2_A* 2pf1_A* 1nl2_A* 2spt_A*
Length = 147
Score = 26.9 bits (58), Expect = 9.4
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 2/111 (1%)
Query: 136 ECLSDPCSPEGTDKCLDLDNKFQCECNVGYTGVMCETNIDDCKSNPCLNGGICRDGVAKF 195
ECL +PCS E + L+ + K N CL G +
Sbjct: 17 ECLEEPCSREEAFEALESLSATDAFWAKYTACESA--RNPREKLNECLEGNCAEGVGMNY 74
Query: 196 TCDCPPGWTGSRCEKDIGSCTNMPCQNDANCIDLFQDFFCVSSHSVQGRRP 246
+ +G C+ + P N + P
Sbjct: 75 RGNVSVTRSGIECQLWRSRYPHKPEINSTTHPGADLRENFCRNPDGSITGP 125
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 27.5 bits (60), Expect = 9.6
Identities = 28/197 (14%), Positives = 49/197 (24%), Gaps = 27/197 (13%)
Query: 60 INDTPNDSIPGTCTDLVGGFSCSCDLGFTGKHCQHLIDDCASEPCQNGGSCVDMLDGFMC 119
++ N+ I G G C + + I++ + C C M
Sbjct: 131 LDAVSNNYIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCP---S 187
Query: 120 QCRPGFVGLQCEADIDECLSDPCSPEGTDKCLD-----LDNKFQCECNVGY--------- 165
C E ECL +P+ C+ C
Sbjct: 188 TCGKRACTENNECCHPECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCV 247
Query: 166 TGVMCETNIDDCKSNPC---LNGGICRDGVAKFTCDCPPGWTGSRCEKDIGSCTNMPCQN 222
C + S+ ++ G C +CP G+ + + PC
Sbjct: 248 DRDFCANILSAESSDSEGFVIHDGEC-------MQECPSGFIRNGSQSMYCIPCEGPCPK 300
Query: 223 DANCIDLFQDFFCVSSH 239
+ V+S
Sbjct: 301 VCEEEKKTKTIDSVTSA 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.467
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,639,344
Number of extensions: 413800
Number of successful extensions: 2342
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1527
Number of HSP's successfully gapped: 589
Length of query: 418
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 322
Effective length of database: 4,021,377
Effective search space: 1294883394
Effective search space used: 1294883394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)