BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3621
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TMW|A Chain A, Solution Structure Of Human Coactosin Like Protein D123n
Length = 149
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G V +QRAKTG
Sbjct: 61 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTG 94
>pdb|1WNJ|A Chain A, Nmr Structure Of Human Coactosin-Like Protein
Length = 145
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 5 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 64
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G V +QRAKTG
Sbjct: 65 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTG 98
>pdb|1VFQ|A Chain A, The Crystal Structure Of Human Coactosin-Like Protein At
1.9 A Resolution
Length = 143
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 3 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 62
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G V +QRAKTG
Sbjct: 63 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTG 96
>pdb|1T3X|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
pdb|1T3Y|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
Length = 141
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 53/94 (56%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G V +QRAKTG
Sbjct: 61 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTG 94
>pdb|1WM4|A Chain A, Solution Structure Of Mouse Coactosin, An Actin Filament
Binding Protein
Length = 142
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W F+Y + I +G + F Q D R F +
Sbjct: 2 ATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAF 61
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G +V +QRAKTG
Sbjct: 62 VRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTG 95
>pdb|1UDM|A Chain A, Solution Structure Of Coactosin-Like Protein (Cofilin
Family) From Mus Musculus
Length = 149
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W F+Y + I +G + F Q D R F +
Sbjct: 9 ATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAF 68
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD MS+R KF LITW+G +V +QRAKTG
Sbjct: 69 VRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTG 102
>pdb|1T2L|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
pdb|1T2L|B Chain B, Three Crystal Structures Of Human Coactosin-Like Protein
Length = 141
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 52/94 (55%)
Query: 4 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
+R TGD S+R KF LITW+G V +QRAKTG
Sbjct: 61 VRFTTGDAXSKRSKFALITWIGENVSGLQRAKTG 94
>pdb|1X67|A Chain A, Solution Structure Of The Cofilin Homology Domain Of
Hip-55 (Drebrin-Like Protein)
Length = 146
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 56/125 (44%), Gaps = 11/125 (8%)
Query: 8 DSKSIKSAYEDVRSDASQTQWAVFKYQ----DSKISCTARGQSFDKFRAQFRPDERSFGY 63
+ +++ AY V ++ S T WA+F Y+ D +++ T G ++ + + + +
Sbjct: 15 NGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEG-GLEEMVEELNSGKVMYAF 73
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAK 123
R+ D S KF+LI W G V +++ +S FL G V + RA+
Sbjct: 74 CRVK--DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLK----GAHVTINARAE 127
Query: 124 VSIDK 128
++
Sbjct: 128 EDVEP 132
>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein
From Shigella Flexneri
Length = 457
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 5 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQS 46
T DS+ +++ D+ D TQW + Y K+ + G +
Sbjct: 314 TPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHA 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,602,862
Number of Sequences: 62578
Number of extensions: 123200
Number of successful extensions: 354
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 19
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)