Query psy3621
Match_columns 136
No_of_seqs 107 out of 345
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:15:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3655|consensus 100.0 3E-31 6.4E-36 226.3 12.0 127 3-135 4-133 (484)
2 PF00241 Cofilin_ADF: Cofilin/ 99.9 5.6E-24 1.2E-28 153.1 13.3 120 10-134 1-125 (127)
3 cd00013 ADF Actin depolymerisa 99.9 3.9E-23 8.4E-28 149.5 13.2 121 9-134 6-131 (132)
4 smart00102 ADF Actin depolymer 99.9 1.7E-21 3.7E-26 141.0 12.9 121 10-135 1-126 (127)
5 PLN03216 actin depolymerizing 99.8 4.7E-20 1E-24 137.0 13.1 122 9-135 13-140 (141)
6 PTZ00152 cofilin/actin-depolym 99.6 1.7E-14 3.7E-19 105.2 9.6 95 9-116 8-107 (122)
7 KOG1735|consensus 99.5 4.3E-14 9.2E-19 105.8 9.6 121 9-134 8-139 (146)
8 KOG1747|consensus 97.8 9.1E-05 2E-09 61.7 7.8 98 9-117 10-115 (342)
9 KOG1747|consensus 97.3 0.003 6.6E-08 52.8 10.1 107 9-124 180-295 (342)
10 KOG1736|consensus 96.5 0.063 1.4E-06 39.7 10.3 122 9-135 11-140 (143)
11 KOG3655|consensus 92.3 0.038 8.1E-07 48.6 -0.1 52 72-136 59-110 (484)
12 PF08756 YfkB: YfkB-like domai 77.9 2.9 6.2E-05 31.6 3.2 46 6-55 12-59 (153)
13 cd00032 CASc Caspase, interleu 54.6 66 0.0014 25.3 6.9 73 5-87 52-130 (243)
14 smart00115 CASc Caspase, inter 41.5 1.6E+02 0.0034 23.2 7.2 71 5-85 50-127 (241)
15 COG4680 Uncharacterized protei 29.4 76 0.0016 22.4 3.1 32 9-41 38-69 (98)
16 COG0855 Ppk Polyphosphate kina 28.8 1.1E+02 0.0023 28.6 4.8 70 56-135 172-248 (696)
17 PF14577 SEO_C: Sieve element 25.7 1.3E+02 0.0029 24.3 4.4 35 10-45 125-160 (235)
18 PF09987 DUF2226: Uncharacteri 25.0 1.1E+02 0.0023 25.7 3.8 36 45-82 16-51 (297)
19 COG3721 HugX Putative heme iro 24.5 1.2E+02 0.0026 23.4 3.7 66 5-82 54-125 (176)
20 PF15580 Imm33: Immunity prote 24.0 46 0.00099 23.1 1.2 38 16-55 48-87 (90)
21 KOG0445|consensus 23.9 56 0.0012 30.8 2.1 52 46-97 537-600 (919)
22 PF00145 DNA_methylase: C-5 cy 22.9 1E+02 0.0022 24.2 3.2 49 60-118 91-139 (335)
23 PRK14038 ADP-dependent glucoki 21.8 58 0.0013 28.9 1.7 47 13-59 8-55 (453)
24 PF08206 OB_RNB: Ribonuclease 21.4 1.8E+02 0.004 17.7 3.6 35 60-121 9-43 (58)
25 PF02503 PP_kinase: Polyphosph 20.4 3.8E+02 0.0083 20.7 6.0 32 103-134 89-126 (207)
26 PF11324 DUF3126: Protein of u 20.1 1.1E+02 0.0025 19.8 2.4 26 100-125 2-27 (63)
No 1
>KOG3655|consensus
Probab=99.97 E-value=3e-31 Score=226.27 Aligned_cols=127 Identities=30% Similarity=0.577 Sum_probs=117.1
Q ss_pred ccccCChHHHHHHHHHHhcCCCcccEEEEEecCC--eEEEeeeCC-CHHHHhhcCCCCceEEEEEEeEeCCCCcceeeEE
Q psy3621 3 CPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFL 79 (136)
Q Consensus 3 m~~~~~~~~i~~a~~~Vr~d~~~~nW~l~~y~~~--~l~~~~~G~-g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~Kfv 79 (136)
|.+..+..+|+++|+.|++|.+.++|+||+|+|+ +|.+.++|. |++||..+|..++++||++||. |.+++++|||
T Consensus 4 l~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~--D~~s~l~Kfv 81 (484)
T KOG3655|consen 4 LNTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVK--DPMSGLPKFV 81 (484)
T ss_pred ccccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEec--CcccCCcceE
Confidence 3456779999999999999999999999999996 788888888 9999999999999999999998 9999999999
Q ss_pred EEEeecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhhh
Q psy3621 80 LITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135 (136)
Q Consensus 80 fI~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~~ 135 (136)
||+|||++||.+|||+|++|.+.++.||+ |+||+++||.+.+++.+.|++-|
T Consensus 82 LI~W~GE~vp~~Rka~~ath~a~v~~~lk----g~hV~i~Ar~e~Dld~d~i~~~l 133 (484)
T KOG3655|consen 82 LINWIGEGVPVLRKAKCATHKALVKNFLK----GFHVEINARSEEDLDEDAIREKL 133 (484)
T ss_pred EEEecCCccHHHhhhhhcchHHHHHHHhh----cceEEEeccchhhcCHHHHHHHH
Confidence 99999999999999999988777766666 99999999999999999998754
No 2
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.92 E-value=5.6e-24 Score=153.13 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCCcccEEEEEecCC--eEEEeeeC--C-CHHHHhhcCCCCceEEEEEEeEeCCCCcceeeEEEEEee
Q psy3621 10 KSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARG--Q-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWV 84 (136)
Q Consensus 10 ~~i~~a~~~Vr~d~~~~nW~l~~y~~~--~l~~~~~G--~-g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~KfvfI~W~ 84 (136)
|+|.+||++++++++ ++|++|+|+++ .|.+..+| . +++||.++|++++++|+++|+....+++.+.|++||.||
T Consensus 1 ~e~~~~~~~~~~~~~-~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKS-TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTS-CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEe
Confidence 689999999999987 99999999986 79998887 5 999999999999999999999966668999999999999
Q ss_pred cCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhh
Q psy3621 85 GCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSV 134 (136)
Q Consensus 85 G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~ 134 (136)
|+++|+.+|.. ||++++.|++.+.|.++.++++...+++.+.|++=
T Consensus 80 P~~~~vk~km~----yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~k 125 (127)
T PF00241_consen 80 PDNAPVKEKML----YASSKASLKKKLGGIHIEIQASDPDDLSEEEILEK 125 (127)
T ss_dssp STTS-HHHHHH----HHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHH
T ss_pred cCCccHHHhhh----hHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHh
Confidence 99999999887 77888888888889999999999999999988763
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.90 E-value=3.9e-23 Score=149.45 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=108.6
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecC--CeEEEeeeCC---CHHHHhhcCCCCceEEEEEEeEeCCCCcceeeEEEEEe
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQD--SKISCTARGQ---SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITW 83 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~--~~l~~~~~G~---g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~KfvfI~W 83 (136)
++++.+||++++++. ..+|++|.|++ +.|++.++|. +++||+++|++++++|+++|+....+++.+.|++||.|
T Consensus 6 ~~e~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~w 84 (132)
T cd00013 6 SDECKEAFEELKSGK-KTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTEGSKKSKIVFIYW 84 (132)
T ss_pred CHHHHHHHHHHHhCC-ceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCCCccccCEEEEEE
Confidence 589999999999876 58999999998 4899988887 79999999999999999999986555788999999999
Q ss_pred ecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhh
Q psy3621 84 VGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSV 134 (136)
Q Consensus 84 ~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~ 134 (136)
||+++|+..|.. ||+++..|++.+.|.++.+.++...+++.+.|.+-
T Consensus 85 ~P~~a~~k~km~----yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~k 131 (132)
T cd00013 85 SPETAPVKSKML----YASSKAALKRELVGIQVEVQATDPDELDEEALLEK 131 (132)
T ss_pred CCCCCChhhhhh----hHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhh
Confidence 999999988877 66778888888889999999999999999888764
No 4
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.87 E-value=1.7e-21 Score=141.00 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCCcccEEEEEecCC--eEEEeeeCC---CHHHHhhcCCCCceEEEEEEeEeCCCCcceeeEEEEEee
Q psy3621 10 KSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ---SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWV 84 (136)
Q Consensus 10 ~~i~~a~~~Vr~d~~~~nW~l~~y~~~--~l~~~~~G~---g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~KfvfI~W~ 84 (136)
+++.+||+++|..+. .+|++|.+.++ .|++..+|. +++||.+.|++++++|+++|+....++++++|++||.||
T Consensus 1 ~~~~~~~~~~~~~~~-~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRK-HSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCC-ceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEEC
Confidence 478999999998764 89999999874 788887762 799999999999999999999965557889999999999
Q ss_pred cCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhhh
Q psy3621 85 GCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135 (136)
Q Consensus 85 G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~~ 135 (136)
|+++|+.+|.. |+++++.|++.+.|.++.++++...+++.+.|.+-|
T Consensus 80 P~~a~~~~km~----yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl 126 (127)
T smart00102 80 PDGAPVKSKML----YASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKL 126 (127)
T ss_pred CCCCCHHHHHH----HHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHh
Confidence 99999988777 778888888888899999999999999999887654
No 5
>PLN03216 actin depolymerizing factor; Provisional
Probab=99.84 E-value=4.7e-20 Score=137.02 Aligned_cols=122 Identities=14% Similarity=0.252 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecCC--eEEEeeeC---CCHHHHhhcCCCCceEEEEEEeE-eCCCCcceeeEEEEE
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARG---QSFDKFRAQFRPDERSFGYLRMM-TGDEMSRRLKFLLIT 82 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~~--~l~~~~~G---~g~~El~~~l~d~~v~Ygl~Rv~-~~d~~s~~~KfvfI~ 82 (136)
+++|.++|++++..+ ..+|++|.++++ .+++..+| .+++||.++|++++++|+++|.. ..++++.+.|++||.
T Consensus 13 ~~~c~~~f~~lk~~k-~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvFI~ 91 (141)
T PLN03216 13 TDECKNSFMEMKWKK-VHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIA 91 (141)
T ss_pred CHHHHHHHHHHHhCC-CceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEEEE
Confidence 789999999999764 369999999874 68887654 38999999999999999999998 456678899999999
Q ss_pred eecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhhh
Q psy3621 83 WVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135 (136)
Q Consensus 83 W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~~ 135 (136)
|||+++|+.. ||. |++.|+.|++.+.|.++.+++....+++.+.|.+-+
T Consensus 92 w~Pd~a~vk~--KMl--YAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~ 140 (141)
T PLN03216 92 WSPEASRIRA--KML--YATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRA 140 (141)
T ss_pred ECCCCCCHHH--HHH--HHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHh
Confidence 9999999965 444 899999999999999999999999999999987643
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=105.21 Aligned_cols=95 Identities=9% Similarity=0.257 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecCCeEEEeeeCC--CHHHHhhcCCCCc---eEEEEEEeEeCCCCcceeeEEEEEe
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQFRPDE---RSFGYLRMMTGDEMSRRLKFLLITW 83 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~~~l~~~~~G~--g~~El~~~l~d~~---v~Ygl~Rv~~~d~~s~~~KfvfI~W 83 (136)
+++|.++|++++..+ ..+|++|..+++.++|..+|. .++||.+.|++++ ++|++++.. .|++||.|
T Consensus 8 ~de~~~~f~~lk~~k-~~r~iifkI~~~~Ivv~~~~~~~~~~e~~~~L~~~~~~~crY~vyd~~--------~klvFI~w 78 (122)
T PTZ00152 8 NDNCVTEFNNMKIRK-TCRWIIFVIENCEIIIHSKGATTTLTELVGSIDKNDKIQCAYVVFDAV--------NKIHFFMY 78 (122)
T ss_pred CHHHHHHHHHHhcCC-cceEEEEEEcCcEEEEEecCCCCCHHHHHHhccccCCCCceEEEEccC--------CCEEEEEE
Confidence 789999999999764 479999999887888888777 8999999999988 999999863 57999999
Q ss_pred ecCCccccccccccchhhhHHHhhhhhccccee
Q psy3621 84 VGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEV 116 (136)
Q Consensus 84 ~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V 116 (136)
||+++|+.. ||. |++.|+.|++.+.|..+
T Consensus 79 ~Pd~a~ik~--KMl--YASsK~~l~~~l~Gi~~ 107 (122)
T PTZ00152 79 ARESSNSRD--RMT--YASSKQALLKKIEGVNV 107 (122)
T ss_pred CCCCCChHH--hhh--hHhHHHHHHHHhcchhH
Confidence 999999944 666 99999999999888654
No 7
>KOG1735|consensus
Probab=99.54 E-value=4.3e-14 Score=105.76 Aligned_cols=121 Identities=15% Similarity=0.257 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecCC--eEEEeeeCC---CHHHHhhcCC---CCceEEEEEEeEeC--CC-Ccceee
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ---SFDKFRAQFR---PDERSFGYLRMMTG--DE-MSRRLK 77 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~~--~l~~~~~G~---g~~El~~~l~---d~~v~Ygl~Rv~~~--d~-~s~~~K 77 (136)
.+++..++++++..+ ...+++|..+++ .+.+...|+ .+++|..+|+ +++|+||+++++.. -. +++..|
T Consensus 8 sde~~~~F~elk~kk-~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~~~~~K 86 (146)
T KOG1735|consen 8 SDECKKVFNELKVKK-RKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGNCKKSK 86 (146)
T ss_pred cHHHHHHHHHHHhhc-ceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccccceeee
Confidence 689999999999965 499999999985 566655444 8999999999 99999999999932 22 568999
Q ss_pred EEEEEeecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhh
Q psy3621 78 FLLITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSV 134 (136)
Q Consensus 78 fvfI~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~ 134 (136)
++||+|||+.+|..+ ||- |+|.+..|++.|.|.++++||..-.++.-+.|++-
T Consensus 87 i~f~~wsPd~a~vKs--KMi--YaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ek 139 (146)
T KOG1735|consen 87 IFFIAWSPDTAPVKS--KMI--YASSKDALKRELTGIQHELQATDPSEMSLDSLAEK 139 (146)
T ss_pred EEEEEECCCccchhh--hee--ehhhHHHHhhhccCceeeeecCChHHhhHHHHHHH
Confidence 999999999999966 555 89999999999999999999999888877776653
No 8
>KOG1747|consensus
Probab=97.81 E-value=9.1e-05 Score=61.70 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecCCeEEE----eeeCC---CHHHHhhcC-CCCceEEEEEEeEeCCCCcceeeEEE
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISC----TARGQ---SFDKFRAQF-RPDERSFGYLRMMTGDEMSRRLKFLL 80 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~~~l~~----~~~G~---g~~El~~~l-~d~~v~Ygl~Rv~~~d~~s~~~Kfvf 80 (136)
.+++...+++-++.+ .+=+.+..++..|.+ ..+++ ++++++.-| .+.+-.|.|+|.+ ++.++++|
T Consensus 10 ~e~l~~~l~~~~~~k--~R~ikIvI~nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrld-----s~~~~w~l 82 (342)
T KOG1747|consen 10 TEALKKFLNEAKNGK--LRLIKIVIENEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLD-----SKNAEWLL 82 (342)
T ss_pred HHHHHHHHHhcccCc--eEEEEEEEecccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeec-----CCCccEEE
Confidence 567788888877765 444555555544443 33444 888888774 6688899999985 55569999
Q ss_pred EEeecCCccccccccccchhhhHHHhhhhhcccceeE
Q psy3621 81 ITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVG 117 (136)
Q Consensus 81 I~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~ 117 (136)
|+|+||++|+-+ ||. |++-++.|++-|.|.+++
T Consensus 83 Is~vPD~apVR~--KML--YAsTrATlkrefG~~~i~ 115 (342)
T KOG1747|consen 83 ISWVPDNAPVRQ--KML--YASTRATLKREFGGAYIT 115 (342)
T ss_pred EEECCCCChHHH--HHH--HHHHHHHHHHHhccceec
Confidence 999999999966 666 889999999998888774
No 9
>KOG1747|consensus
Probab=97.29 E-value=0.003 Score=52.77 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecC--CeEEEeeeCC--CHHHHhhcCCCCceEEEEEEeE---eCCCCcceeeEEEE
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQD--SKISCTARGQ--SFDKFRAQFRPDERSFGYLRMM---TGDEMSRRLKFLLI 81 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~--~~l~~~~~G~--g~~El~~~l~d~~v~Ygl~Rv~---~~d~~s~~~KfvfI 81 (136)
++...+|.+++.+.. .|+++|..+- .+|.+..+-. .+.+|.+.++.|..+|.|+++. .||+ ..+++||
T Consensus 180 ~~~a~kAl~~L~~~~--~n~vql~ID~~nE~I~l~~t~~~~e~sdL~s~vP~d~prY~ff~~~ht~eGD~---~es~~FI 254 (342)
T KOG1747|consen 180 DRNAEKALQDLKSSK--LNYVQLSIDLENETIQLSQTDTCTEPSDLPSRVPRDGPRYHFFLFKHTHEGDP---LESIVFI 254 (342)
T ss_pred cHHHHHHHHHHHhhc--cceEEEEeccccceeeeeccCCCCChHHhhhhcCCCCCceEEEecccccCCCC---ceeEEEE
Confidence 445678899988876 7999999995 3799887666 9999999999999999999987 5665 5688999
Q ss_pred EeecC-CccccccccccchhhhHHHhhhhhcc-cceeEEEeeccc
Q psy3621 82 TWVGC-EVGVIQRAKTGDEMSRRLKFLLITWV-GCEVGVIQRAKV 124 (136)
Q Consensus 82 ~W~G~-~v~~~~r~k~~~~~s~~~~~~~~~~~-G~~V~~~ar~~~ 124 (136)
-=||. +..+..| |. ||++|.-|-+... -.+|.+..+-+.
T Consensus 255 YS~P~~~~sVKeR--Ml--YSScK~~fLd~~k~~~gi~i~kKiEi 295 (342)
T KOG1747|consen 255 YSMPGYGCSVKER--ML--YSSCKSGFLDSLKNDLGIVISKKIEI 295 (342)
T ss_pred EECCCCCcchhhh--hH--hhhcchhHHHHHHHhcCeeEEEEEee
Confidence 98888 7777664 44 8888877666554 345555554433
No 10
>KOG1736|consensus
Probab=96.49 E-value=0.063 Score=39.74 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHhcC-CCcccEEE-EEecCC--eEEEee---eCCCHHHHhhcCCCCceEEEEEEeE-eCCCCcceeeEEE
Q psy3621 9 SKSIKSAYEDVRSD-ASQTQWAV-FKYQDS--KISCTA---RGQSFDKFRAQFRPDERSFGYLRMM-TGDEMSRRLKFLL 80 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d-~~~~nW~l-~~y~~~--~l~~~~---~G~g~~El~~~l~d~~v~Ygl~Rv~-~~d~~s~~~Kfvf 80 (136)
+++..+.+...|-- +.+.|.++ .+.+.. .|++.+ .+...+||++.|++.+-+|-++-.. ..+++....-.+|
T Consensus 11 ~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stPL~~ 90 (143)
T KOG1736|consen 11 GTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTPLCF 90 (143)
T ss_pred CHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccccEEE
Confidence 56777788876655 44455554 455543 466653 3337789999999999999999887 4566677778999
Q ss_pred EEeecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhhh
Q psy3621 81 ITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135 (136)
Q Consensus 81 I~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~~ 135 (136)
|-|.|.+++.=.+ | .|+..|.-|... .+.+=-.-+|+.+|++.+.+.+.|
T Consensus 91 Iyw~P~~~~~e~~--M--mYAgak~~~~~~-~~~~KvfEir~tdD~t~e~l~E~L 140 (143)
T KOG1736|consen 91 IYWSPVGCKPEQQ--M--MYAGAKNMLVQT-AELTKVFEIRSTDDLTEEWLREKL 140 (143)
T ss_pred EEecCccCCHHHH--H--HHHHHHHHHHHH-hhheEEEEecccccccHHHHHHHh
Confidence 9999998876552 2 266666666544 345555667888999998887765
No 11
>KOG3655|consensus
Probab=92.29 E-value=0.038 Score=48.57 Aligned_cols=52 Identities=37% Similarity=0.553 Sum_probs=42.6
Q ss_pred CcceeeEEEEEeecCCccccccccccchhhhHHHhhhhhcccceeEEEeeccccCCHHHHhhhhC
Q psy3621 72 MSRRLKFLLITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136 (136)
Q Consensus 72 ~s~~~KfvfI~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar~~~~~~~~~i~~~~~ 136 (136)
++...-|+|+. +++-.|...+|+-..|+|+.|.+.+|++.+.|+..|++||+
T Consensus 59 ~~~kv~yg~~r-------------v~D~~s~l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lk 110 (484)
T KOG3655|consen 59 DSGKVMYGFCR-------------VKDPMSGLPKFVLINWIGEGVPVLRKAKCATHKALVKNFLK 110 (484)
T ss_pred ccCceeEEEEE-------------ecCcccCCcceEEEEecCCccHHHhhhhhcchHHHHHHHhh
Confidence 34556666666 55556777788888899999999999999999999999985
No 12
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=77.88 E-value=2.9 Score=31.61 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=35.7
Q ss_pred cCChHHHHHHHHHHhcCCCcccEEEEEecCCeEEEeeeCC--CHHHHhhcCC
Q psy3621 6 TLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQFR 55 (136)
Q Consensus 6 ~~~~~~i~~a~~~Vr~d~~~~nW~l~~y~~~~l~~~~~G~--g~~El~~~l~ 55 (136)
.++-+++++|+..+.+-..+--||||| +|-++.-.. .=.+|++.|.
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFG----TLPfy~Cs~~eeD~~Ll~RL~ 59 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFG----TLPFYPCSDDEEDLALLKRLR 59 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEec----ccccccCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999 777777555 3334566653
No 13
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=54.60 E-value=66 Score=25.30 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=51.0
Q ss_pred ccCChHHHHHHHHHHhc-CCCcccEEEEEecCC----eEEEeeeCC-CHHHHhhcCCCCceEEEEEEeEeCCCCcceeeE
Q psy3621 5 TTLDSKSIKSAYEDVRS-DASQTQWAVFKYQDS----KISCTARGQ-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKF 78 (136)
Q Consensus 5 ~~~~~~~i~~a~~~Vr~-d~~~~nW~l~~y~~~----~l~~~~~G~-g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~Kf 78 (136)
.|++..++.+++.++.. +....+-+++-|-+. .|....... .++++.+.|..+.+. . ...+||+
T Consensus 52 ~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~~~------s----l~~kPKl 121 (243)
T cd00032 52 NNLTAEEILEELKEFASPDHSDSDSFVCVILSHGEEGGIYGTDGDVVPIDEITSLFNGDNCP------S----LAGKPKL 121 (243)
T ss_pred CCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCCCCCEEEEecCcEEEHHHHHHhhccCCCc------c----ccCCCcE
Confidence 57889999999999885 666677877777652 344333233 899999999876653 1 1236889
Q ss_pred EEEEeecCC
Q psy3621 79 LLITWVGCE 87 (136)
Q Consensus 79 vfI~W~G~~ 87 (136)
+||.=|-.+
T Consensus 122 ~~iqACRg~ 130 (243)
T cd00032 122 FFIQACRGD 130 (243)
T ss_pred EEEECCCCC
Confidence 998755443
No 14
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=41.50 E-value=1.6e+02 Score=23.22 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=48.0
Q ss_pred ccCChHHHHHHHHHHhc--CCCcccEEEEEecCC---eEEEeeeC-C-CHHHHhhcCCCCceEEEEEEeEeCCCCcceee
Q psy3621 5 TTLDSKSIKSAYEDVRS--DASQTQWAVFKYQDS---KISCTARG-Q-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLK 77 (136)
Q Consensus 5 ~~~~~~~i~~a~~~Vr~--d~~~~nW~l~~y~~~---~l~~~~~G-~-g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~K 77 (136)
.|++..++.++++++.. +....+-+++-|-+. ...+...| . .++++.+.|..+.+. ....+||
T Consensus 50 ~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG~~~~l~~~D~~~v~l~~i~~~f~~~~c~----------~L~~kPK 119 (241)
T smart00115 50 NNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHGEEGGIYGTDHSPLPLDEIFSLFNGDNCP----------SLAGKPK 119 (241)
T ss_pred cCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCCCCCeEEEecCCEEEHHHHHHhccccCCh----------hhcCCCc
Confidence 57889999999999876 344577777777652 22222334 3 889999999776552 1123689
Q ss_pred EEEEEeec
Q psy3621 78 FLLITWVG 85 (136)
Q Consensus 78 fvfI~W~G 85 (136)
++||.=|-
T Consensus 120 lffiqACR 127 (241)
T smart00115 120 LFFIQACR 127 (241)
T ss_pred EEEEeCCC
Confidence 99998663
No 15
>COG4680 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.41 E-value=76 Score=22.36 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhcCCCcccEEEEEecCCeEEEe
Q psy3621 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISCT 41 (136)
Q Consensus 9 ~~~i~~a~~~Vr~d~~~~nW~l~~y~~~~l~~~ 41 (136)
.+++++++- +-.+.-..||++|...||.++|.
T Consensus 38 P~diK~~f~-~d~~~~~Dnr~Vfdi~GN~yRLI 69 (98)
T COG4680 38 PEDIKSVFP-LDNFKYLDNRVVFDIGGNKYRLI 69 (98)
T ss_pred HHHHHHhcC-cccceeccceEEEEcCCCEEEEE
Confidence 446666664 23333446899999999876654
No 16
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=28.84 E-value=1.1e+02 Score=28.65 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=48.3
Q ss_pred CCceEEEEEEeEeCCCCcceeeEEEEEeecCCccccccccccchh-hhHHHhhhhhcccceeE------EEeeccccCCH
Q psy3621 56 PDERSFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTGDEM-SRRLKFLLITWVGCEVG------VIQRAKVSIDK 128 (136)
Q Consensus 56 d~~v~Ygl~Rv~~~d~~s~~~KfvfI~W~G~~v~~~~r~k~~~~~-s~~~~~~~~~~~G~~V~------~~ar~~~~~~~ 128 (136)
+....||++++. +..++||-.. ++...-.++.+ -+ +=+..++.++|.|+.|. +++.|...++.
T Consensus 172 ~~~~~~Alv~iP-----~~lpRfv~LP---~~~~~~~~~~f--~Le~ii~~~l~~LFpG~~v~~~~~FRiTRdaDl~v~E 241 (696)
T COG0855 172 AFGEHYALVKIP-----SVLPRFVELP---SELAGRGRGPV--LLESIIAAFLDELFPGYEVLGCYAFRITRDADLEVEE 241 (696)
T ss_pred CCcceeEEEECC-----cccchheECC---ccccccccccc--cHHHHHHHHHHHhCCCCeeecceeEEEeecccccccc
Confidence 344789999986 4567888776 33444444443 24 45678899999999875 67788888888
Q ss_pred HHHhhhh
Q psy3621 129 ALVKSVI 135 (136)
Q Consensus 129 ~~i~~~~ 135 (136)
+...+++
T Consensus 242 e~a~dL~ 248 (696)
T COG0855 242 EEAEDLL 248 (696)
T ss_pred hhHHHHH
Confidence 8666654
No 17
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=25.72 E-value=1.3e+02 Score=24.35 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCC-CcccEEEEEecCCeEEEeeeCC
Q psy3621 10 KSIKSAYEDVRSDA-SQTQWAVFKYQDSKISCTARGQ 45 (136)
Q Consensus 10 ~~i~~a~~~Vr~d~-~~~nW~l~~y~~~~l~~~~~G~ 45 (136)
+.+.+-+..+.+=+ ++.-|+|++ .|+.+.+.|.|+
T Consensus 125 D~i~qEV~~LLs~d~~~~GWavls-kGs~v~~~ghG~ 160 (235)
T PF14577_consen 125 DPIMQEVKKLLSYDQDEQGWAVLS-KGSNVMVKGHGE 160 (235)
T ss_pred cHHHHHHHHHhCCCCCCCceEEEe-cCCceeeecccc
Confidence 33444477766544 779999997 566788889997
No 18
>PF09987 DUF2226: Uncharacterized protein conserved in archaea (DUF2226); InterPro: IPR019249 This entry includes hypothetical proteins of unknown function.
Probab=25.00 E-value=1.1e+02 Score=25.73 Aligned_cols=36 Identities=14% Similarity=0.440 Sum_probs=28.9
Q ss_pred CCHHHHhhcCCCCceEEEEEEeEeCCCCcceeeEEEEE
Q psy3621 45 QSFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLIT 82 (136)
Q Consensus 45 ~g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~~~KfvfI~ 82 (136)
..+.||.+.|+...- ||+|++.++++.-..-|+|+.
T Consensus 16 ~~~~El~~~l~~~~~--GyIRis~k~~~~~~egyIfv~ 51 (297)
T PF09987_consen 16 GNFKELLDELKSNEF--GYIRISVKSNEKFKEGYIFVE 51 (297)
T ss_pred cCHHHHHHhhcccCC--CeEEEEEecCCceeeEEEEEE
Confidence 479999999998655 999999776665666788887
No 19
>COG3721 HugX Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=24.54 E-value=1.2e+02 Score=23.43 Aligned_cols=66 Identities=9% Similarity=0.282 Sum_probs=46.4
Q ss_pred ccCChHHHHHHHHHHhcCCCcccEEEEEecCCeEEEeeeCCCHHHHhhcCCCCceEEEEEEeEeCCCCcc------eeeE
Q psy3621 5 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGYLRMMTGDEMSR------RLKF 78 (136)
Q Consensus 5 ~~~~~~~i~~a~~~Vr~d~~~~nW~l~~y~~~~l~~~~~G~g~~El~~~l~d~~v~Ygl~Rv~~~d~~s~------~~Kf 78 (136)
+.+..+.....|++++. | |+...+.-++..+-|+...||.+.+.-|++-+.-.++.+. .+++
T Consensus 54 ~vvpgdrfd~iw~~m~e------W------G~vttiv~tad~IlEvkg~lP~G~~~hGyfNL~gk~~l~GHiK~eNcs~I 121 (176)
T COG3721 54 VVVPGDRFDTIWDEMCE------W------GNVTTIVHTADVILEVKGPLPSGTHRHGYFNLRGKDGLSGHIKAENCSHI 121 (176)
T ss_pred eecchHHHHHHHHHhhc------c------CceeEEEEecceEEEecCCCCCCccccceEeecCCCCCcceeecccccee
Confidence 45667777777777764 3 2345667777788899999999999999998874454443 2455
Q ss_pred EEEE
Q psy3621 79 LLIT 82 (136)
Q Consensus 79 vfI~ 82 (136)
.|+.
T Consensus 122 alv~ 125 (176)
T COG3721 122 ALVE 125 (176)
T ss_pred eEec
Confidence 5554
No 20
>PF15580 Imm33: Immunity protein 33
Probab=24.01 E-value=46 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=28.2
Q ss_pred HHHHhcCCCcccEEEEEecCCeEEEeeeCC--CHHHHhhcCC
Q psy3621 16 YEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQFR 55 (136)
Q Consensus 16 ~~~Vr~d~~~~nW~l~~y~~~~l~~~~~G~--g~~El~~~l~ 55 (136)
+..+..+.+..+|+.+.-+++. +.|.|. -|.+++..|.
T Consensus 48 ~~~i~~~~~~~DW~~~~v~~~~--F~g~ggp~~L~~iL~~F~ 87 (90)
T PF15580_consen 48 FEWIIIERSENDWIHCKVEDGK--FEGAGGPSNLEEILHIFK 87 (90)
T ss_pred cceEeccCCCCCeEEEEEEccE--EEEecCHHHHHHHHHHHH
Confidence 4455566667899999988855 566666 8899888764
No 21
>KOG0445|consensus
Probab=23.87 E-value=56 Score=30.84 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=37.7
Q ss_pred CHHHHhhcCCCCceEEE--EEEeEe-------C---CCCcceeeEEEEEeecCCcccccccccc
Q psy3621 46 SFDKFRAQFRPDERSFG--YLRMMT-------G---DEMSRRLKFLLITWVGCEVGVIQRAKTG 97 (136)
Q Consensus 46 g~~El~~~l~d~~v~Yg--l~Rv~~-------~---d~~s~~~KfvfI~W~G~~v~~~~r~k~~ 97 (136)
.++++..||...+++-- .+++.. | .-...|.|.||+.|.|....+.++|.++
T Consensus 537 ~~~~~~ghF~s~~~YvvrWky~Is~~Vr~~~~g~~~~r~~Gr~rcvyf~WqG~hst~~ekG~~A 600 (919)
T KOG0445|consen 537 RLPQSIGHFHSGDAYVVRWKYMISTAVRSRQKGEHSVRAAGRERCVYFFWQGRHSTVSEKGTSA 600 (919)
T ss_pred hhhhhhhccccCceEEEEEEEEeehhhhhhhcCccchhhcccceEEEEEEccccCCccccccee
Confidence 56789999988776421 123321 1 1124589999999999999999999987
No 22
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=22.90 E-value=1e+02 Score=24.24 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=35.8
Q ss_pred EEEEEEeEeCCCCcceeeEEEEEeecCCccccccccccchhhhHHHhhhhhcccceeEE
Q psy3621 60 SFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGV 118 (136)
Q Consensus 60 ~Ygl~Rv~~~d~~s~~~KfvfI~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~ 118 (136)
.+-++|+. ...+||++++ |+|+.+.+.+.+..+..+.+.|.++ ||+|..
T Consensus 91 ~~~~~~~v----~~~~Pk~~~~----ENV~~l~~~~~~~~~~~i~~~l~~l--GY~v~~ 139 (335)
T PF00145_consen 91 FFEFLRIV----KELKPKYFLL----ENVPGLLSSKNGEVFKEILEELEEL--GYNVQW 139 (335)
T ss_dssp HHHHHHHH----HHHS-SEEEE----EEEGGGGTGGGHHHHHHHHHHHHHT--TEEEEE
T ss_pred hHHHHHHH----hhccceEEEe----cccceeecccccccccccccccccc--ceeehh
Confidence 34455554 2346899877 6999998888777889999999876 898864
No 23
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=21.81 E-value=58 Score=28.87 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCcccEEEEEecCC-eEEEeeeCCCHHHHhhcCCCCce
Q psy3621 13 KSAYEDVRSDASQTQWAVFKYQDS-KISCTARGQSFDKFRAQFRPDER 59 (136)
Q Consensus 13 ~~a~~~Vr~d~~~~nW~l~~y~~~-~l~~~~~G~g~~El~~~l~d~~v 59 (136)
.+||+.+++.-...+-+.++|..| ++...=+|..+.++...++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~gyn~niDai~~l~~~~l~~li~~~~~~~v 55 (453)
T PRK14038 8 ASAFERVRNSIGKVKGVLLAYNTNIDAIKYLKREDLERRIEKAGKEEV 55 (453)
T ss_pred HHHHHHHHHHhhccccEEEEeccceeeeccCCHHHHHHHHHhcCchhh
Confidence 566777666656677899999998 67755667788888888877644
No 24
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.36 E-value=1.8e+02 Score=17.74 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=20.6
Q ss_pred EEEEEEeEeCCCCcceeeEEEEEeecCCccccccccccchhhhHHHhhhhhcccceeEEEee
Q psy3621 60 SFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTGDEMSRRLKFLLITWVGCEVGVIQR 121 (136)
Q Consensus 60 ~Ygl~Rv~~~d~~s~~~KfvfI~W~G~~v~~~~r~k~~~~~s~~~~~~~~~~~G~~V~~~ar 121 (136)
.|||+... + ..+-+||. ...++..+.|+.|.+.-.
T Consensus 9 GfGFv~~~--~----~~~DifIp---------------------~~~l~~A~~gD~V~v~i~ 43 (58)
T PF08206_consen 9 GFGFVIPD--D----GGEDIFIP---------------------PRNLNGAMDGDKVLVRIT 43 (58)
T ss_dssp S-EEEEEC--T-----TEEEEE----------------------HHHHTTS-TT-EEEEEEE
T ss_pred CCEEEEEC--C----CCCCEEEC---------------------HHHHCCCCCCCEEEEEEe
Confidence 48888875 2 35679998 345566688999887543
No 25
>PF02503 PP_kinase: Polyphosphate kinase middle domain; InterPro: IPR003414 Polyphosphate kinase (Ppk) (2.7.4.1 from EC) catalyzes the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules. It is a membrane protein and goes through an intermediate stage during the reaction where it is autophosphorylated with a phosphate group covalently linked to a basic amino acid residue through an N-P bond.; GO: 0008976 polyphosphate kinase activity, 0006799 polyphosphate biosynthetic process, 0009358 polyphosphate kinase complex; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=20.41 E-value=3.8e+02 Score=20.68 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=21.1
Q ss_pred HHHhhhhhccccee------EEEeeccccCCHHHHhhh
Q psy3621 103 RLKFLLITWVGCEV------GVIQRAKVSIDKALVKSV 134 (136)
Q Consensus 103 ~~~~~~~~~~G~~V------~~~ar~~~~~~~~~i~~~ 134 (136)
+..++..+|.|+.| .+++.|..+++.+...++
T Consensus 89 I~~~l~~lFpg~~v~~~~~frvTRdAdl~ided~~edl 126 (207)
T PF02503_consen 89 IRYFLDDLFPGYEVKEAYSFRVTRDADLDIDEDEAEDL 126 (207)
T ss_dssp HHCCHHHHHTTTCEEEEEEEEEEESSSS-TT-TTS-CC
T ss_pred HHHHHHHhCCCCEEEEEEEEEEEehhhcccccchHHHH
Confidence 56677788888765 578888888886555444
No 26
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.05 E-value=1.1e+02 Score=19.80 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred hhhHHHhhhhhcccceeEEEeecccc
Q psy3621 100 MSRRLKFLLITWVGCEVGVIQRAKVS 125 (136)
Q Consensus 100 ~s~~~~~~~~~~~G~~V~~~ar~~~~ 125 (136)
++...++|++.|....+.+.+|.+.+
T Consensus 2 i~klq~yLr~~f~n~~i~v~~rpk~~ 27 (63)
T PF11324_consen 2 IKKLQAYLRRTFGNPGITVKARPKKD 27 (63)
T ss_pred hHHHHHHHHHHhCCCceEEEcCCCCC
Confidence 35678899999999999999997754
Done!