RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3621
(136 letters)
>gnl|CDD|200438 cd11282, ADF_coactosin_like, Coactosin-like members of the ADF
homology domain family. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present
in a family of essential eukaryotic actin regulatory
proteins. Many of these proteins enhance the turnover
rate of actin and interact with actin monomers as well
as actin filaments. The function of coactosins is not
well understood. They appear to interfere with the
capping of actin filaments in Dictyostelium, and may
not be able to bind monomeric globular actin. A role
for coactosins as chaperones stabilizing 5-lipoxygenase
(5LO) has been suggested; 5LO plays a crucial role in
leukotriene synthesis.
Length = 114
Score = 100 bits (252), Expect = 1e-28
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 11 SIKSAYEDVRSDASQTQWAVFKYQDS-KISCTARGQSF-DKFRAQFRPDERSFGYLRMMT 68
I+ AY DVRSD S T W + Y+ S + G D+ +AQ DE FGY+R+
Sbjct: 1 EIREAYNDVRSDVSDTNWVLLGYESSNTLVLRGSGSGGIDELKAQLPDDEVLFGYVRITL 60
Query: 69 GDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
GD S+R KF+ ITW+G V V++RAK
Sbjct: 61 GDGESKRSKFVFITWIGENVSVLRRAKVS 89
>gnl|CDD|200437 cd11281, ADF_drebrin_like, ADF homology domain of drebrin and
actin-binding protein 1 (abp1). Actin depolymerization
factor/cofilin-like domains (ADF domains) are present
in a family of essential eukaryotic actin regulatory
proteins. Many of these proteins enhance the turnover
rate of actin and interact with actin monomers as well
as actin filaments. Abp1 and drebrin (developmentally
regulated brain protein) are multidomain proteins with
an N-terminal ADF homology domain and one or more
C-terminal SH3 domains. They have been shown to
interact with polymeric F-actin, but not with monomeric
G-actin, and do not appear to promote the disassembly
of actin filaments. Drebrin rather stabilizes actin
filaments by inducing changes in the helical twist and
may promote or interfere with the interactions of other
proteins with actin filaments.
Length = 136
Score = 47.2 bits (113), Expect = 1e-07
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 9 SKSIKSAYEDVRSDASQTQWAVFKYQDS----KISCTARGQSFDKFRAQFRPDERSFGYL 64
S I +AYEDV S T WA+F Y+ K++ T G ++ +F + +G+
Sbjct: 7 SPEILAAYEDVVDGKSSTDWALFTYEGKSNDLKVADTGDG-GLEELVEEFSDGKVQYGFA 65
Query: 65 RM-MTGDEMSRRLKFLLITWVG 85
R+ + KF+LI W G
Sbjct: 66 RVKDPNSGLP---KFVLINWCG 84
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like
domains. Severs actin filaments and binds to actin
monomers.
Length = 127
Score = 43.8 bits (104), Expect = 2e-06
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 4/87 (4%)
Query: 13 KSAYEDVRSD--ASQTQWAVFKYQDSKI--SCTARGQSFDKFRAQFRPDERSFGYLRMMT 68
K A+ +++ S + + K + + + S+D+F + DE +
Sbjct: 4 KEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKF 63
Query: 69 GDEMSRRLKFLLITWVGCEVGVIQRAK 95
E S++ K + I W V +
Sbjct: 64 TTEESKKSKIVFIFWSPDGAPVKSKML 90
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding
protein. Severs actin filaments and binds to actin
monomers.
Length = 127
Score = 37.3 bits (87), Expect = 5e-04
Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 13 KSAYEDVRSDASQTQWAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGYLRMM 67
K+++ +++ + + +FK K G S+D+F + E + +
Sbjct: 4 KASFNELKKR-KKHNYIIFKIDKDKDQIVVEQVGDTGDSYDEFVEELPERECRYAVYDVE 62
Query: 68 TGDEMSRRLKFLLITWVGCEVGVIQRAK 95
+ S++ K + ++W G ++K
Sbjct: 63 YTTDGSKKSKIVFVSW--SPDGAPVKSK 88
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and
gelsolin-like domains. Actin depolymerization
factor/cofilin-like domains are present in a family of
essential eukaryotic actin regulatory proteins; these
proteins enhance the turnover rate of actin and interact
with actin monomers as well as actin filaments.
Length = 97
Score = 34.0 bits (78), Expect = 0.006
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 28 WAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLIT 82
W +FK K S A D+F + D+ + + R +R KF+ I+
Sbjct: 2 WVLFKVDAKKEEIVVGSTGAGFL--DEFLEELPEDDPRYAFYRFKYPHSDDKRSKFVFIS 59
Query: 83 WVGCEVGVIQRAKTGDEMSRRLKFL 107
W+ V + Q+ + L
Sbjct: 60 WIPDGVSIKQKMVYATNKQTLKEAL 84
Score = 30.9 bits (70), Expect = 0.065
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 93 RAKTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSV 134
R K +R KF+ I+W+ V + Q+ + +K +K
Sbjct: 42 RFKYPHSDDKRSKFVFISWIPDGVSIKQKMVYATNKQTLKEA 83
>gnl|CDD|234404 TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein,
Rv3446c family, C-terminal domain. Members of this
protein family occur as part of the ESX-4 cluster of
type VII secretion system (T7SS) proteins in
Mycobacterium tuberculosis and in similar T7SS clusters
in other Actinobacteria genera, including
Corynebacterium, Nocardia, Rhodococcus, and
Saccharopolyspora. This model describes the
better-conserved C-terminal region [Protein fate,
Protein and peptide secretion and trafficking].
Length = 172
Score = 29.7 bits (67), Expect = 0.29
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 15 AYEDVRSDASQTQWAVF---KYQDSKISCTARGQSFDKFRAQFR 55
Y + D S W V+ +Q S + C +R + + RA R
Sbjct: 121 TYRETPGDGSTVLWHVWVDDGHQVS-VGCQSRPGANEVVRAACR 163
>gnl|CDD|185689 cd02180, GH16_fungal_KRE6_glucanase, Saccharomyces cerevisiae KRE6
and related glucanses, member of glycosyl hydrolase
family 16. KRE6 is a Saccharomyces cerevisiae glucanase
that participates in the synthesis of beta-1,6-glucan, a
major structural component of the cell wall. It is a
golgi membrane protein required for normal
beta-1,6-glucan levels in the cell wall. KRE6 is
closely realted to laminarinase, a glycosyl hydrolase
family 16 member that hydrolyzes 1,3-beta-D-glucosidic
linkages in 1,3-beta-D-glucans such as laminarins,
curdlans, paramylons, and pachymans, with very limited
action on mixed-link (1,3-1,4-)-beta-D-glucans.
Length = 295
Score = 29.2 bits (66), Expect = 0.67
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 33 YQDSKISCTAR---------GQSFDKFRAQFRPDERSFGYLRMMTGDE 71
+Q + ISC R G F + ++RPD+ GY+ DE
Sbjct: 188 FQQA-ISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDE 234
>gnl|CDD|146396 pfam03735, ENT, ENT domain. This presumed domain is named after
Emsy N Terminus (ENT). Emsy is a protein that is
amplified in breast cancer and interacts with BRCA2.
The N terminus of this protein is found to be similar
to other vertebrate and plant proteins of unknown
function. This domain has a completely conserved
histidine residue that may be functionally important.
Length = 74
Score = 25.3 bits (56), Expect = 5.3
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 30 VFKYQDSKISCTARGQSFDKFRAQFR-PDERSFGYLRMMTGDEMSRRLK 77
F+ Q +S + + + R + R DE LR + DE ++
Sbjct: 19 AFRAQGDALS-WEKEELLTELRKELRISDEEHRELLRRVNSDERLLTIR 66
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 26.6 bits (58), Expect = 5.4
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
Query: 14 SAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRP----DERSFGY-----L 64
S ED + A A+ + D+F A FR +FG L
Sbjct: 110 SGAEDSDASHLDFDEAPPDAAGPVPLAQAKLKHDDEFLAHFRVIDDLPAGAFGKIFICAL 169
Query: 65 RMMTGDEMSRRLKFLLITWVG-CEVGVIQRAKTGDEMSRRLK 105
R T + +RR CE + +R K G + +L+
Sbjct: 170 RASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLE 211
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.134 0.406
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,551,686
Number of extensions: 557119
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 16
Length of query: 136
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 49
Effective length of database: 7,078,804
Effective search space: 346861396
Effective search space used: 346861396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)