RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3621
(136 letters)
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo
sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A
1tmw_A 1wnj_A 1udm_A 1wm4_A
Length = 141
Score = 96.2 bits (239), Expect = 9e-27
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 5 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGYL 64
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F ++
Sbjct: 2 TKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFV 61
Query: 65 RMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG---DEMSRRLK 105
R TGD MS+R KF LITW+G V +QRAKTG + ++
Sbjct: 62 RFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQ 105
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding
protein, SH3P7, MABP1, T-cell lymphocyte signaling and
regulation; NMR {Homo sapiens}
Length = 146
Score = 73.9 bits (181), Expect = 6e-18
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 5 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSK--ISCTARGQ-SFDKFRAQFRPDERSF 61
+ + +++ AY V ++ S T WA+F Y+ + I G+ ++ + + +
Sbjct: 12 LSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMY 71
Query: 62 GYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG---DEMSRRLK 105
+ R+ D S KF+LI W G V +++ M+ LK
Sbjct: 72 AFCRVK--DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFLK 116
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX
researc for structural genomics, NYSGXRC, structural
genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP:
d.109.1.2
Length = 141
Score = 73.4 bits (180), Expect = 8e-18
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 5 TTLDSKSIKSAYEDV-RSDASQTQWAVFKYQDSK-ISCTARGQSFDKFRAQFRPDERSFG 62
T S+ I + Y + R T W + K + G SF F F + +G
Sbjct: 8 YTTHSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDETKVQYG 67
Query: 63 YLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTGDEMSRRLKFLL 108
R+ S K ++I W + RA + L
Sbjct: 68 LARV--SPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVANNLF 111
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle;
2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB:
1ahq_A
Length = 137
Score = 45.4 bits (107), Expect = 4e-07
Identities = 11/90 (12%), Positives = 28/90 (31%), Gaps = 6/90 (6%)
Query: 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSKIS-----CTARGQSFDKFRAQFRPDERSFGY 63
S + +++ Q ++ FK S +++ F++Q + +
Sbjct: 6 SDDCVQKFNELKLG-HQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAI 64
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQR 93
+ +R K I W + +
Sbjct: 65 FDYEFQVDGGQRNKITFILWAPDSAPIKSK 94
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA;
1.72A {Schizosaccharomyces pombe}
Length = 137
Score = 43.0 bits (101), Expect = 2e-06
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSK----ISCTARGQSFDKFRAQFRPDERSFGYL 64
S A+++++ ++ VFK D+K + + + FD F + +
Sbjct: 9 SPECLEAFQELKLG-KSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIY 67
Query: 65 RMMTGDEMSRRLKFLLITWVGCEVGVIQR 93
R K + I+W + +
Sbjct: 68 DFEFNLGEGVRNKIIFISWSPDVAPIKSK 96
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein;
2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB:
1cof_A 1qpv_A
Length = 143
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISC----TARGQSFDKFRAQFRPDERSFGYL 64
+ +A+ D++ + ++ +F D+K T+ S+D F + ++ +
Sbjct: 9 ADESLTAFNDLKLG-KKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIY 67
Query: 65 RM--MTGDEMSRRLKFLLITWVGCEVGVIQRA 94
+R K + TW V +
Sbjct: 68 DFEYEINGNEGKRSKIVFFTWSPDTAPVRSKM 99
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 9 SKSIKSAYEDVRSDASQTQWAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGY 63
+S++ A +D+R ++++ + R ++ + +F ++ +
Sbjct: 9 EESVRGAIDDLRMK--KSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVA 66
Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQR 93
D S+R K +LI W+ ++
Sbjct: 67 FDFEYNDAGSKREKLILIQWIPDTARPREK 96
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 25.3 bits (56), Expect = 8.2
Identities = 7/47 (14%), Positives = 11/47 (23%), Gaps = 7/47 (14%)
Query: 28 WAVFKYQD-------SKISCTARGQSFDKFRAQFRPDERSFGYLRMM 67
W++ KY D I + G + L
Sbjct: 65 WSITKYNDIMHVDTNHDIFSSDAGYGGIIIDDGIQKGGDGGLDLPNF 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.406
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,948,847
Number of extensions: 101573
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 15
Length of query: 136
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 52
Effective length of database: 4,356,429
Effective search space: 226534308
Effective search space used: 226534308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)