RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3621
         (136 letters)



>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 89.9 bits (223), Expect = 7e-25
 Identities = 41/93 (44%), Positives = 53/93 (56%)

Query: 5  TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGYL 64
          T +D ++ ++AY  VR D S   W  FKY  S I    +G  +  F  Q   D R F ++
Sbjct: 2  TKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFV 61

Query: 65 RMMTGDEMSRRLKFLLITWVGCEVGVIQRAKTG 97
          R  TGD MS+R KF LITW+G  V  +QRAKTG
Sbjct: 62 RFTTGDAMSKRSKFALITWIGENVSGLQRAKTG 94


>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding
          protein abp1p {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 139

 Score = 64.9 bits (158), Expect = 5e-15
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 4/89 (4%)

Query: 9  SKSIKSAYEDV-RSDASQTQWAVFKYQDSK-ISCTARGQSFDKFRAQFRPDERSFGYLRM 66
          S+ I + Y  + R     T W +      K     + G SF  F   F   +  +G  R+
Sbjct: 10 SREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDETKVQYGLARV 69

Query: 67 MTGDEMSRRLKFLLITWVGCEVGVIQRAK 95
                S   K ++I W      +  RA 
Sbjct: 70 --SPPGSDVEKIIIIGWCPDSAPLKTRAS 96


>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
          {Acanthamoeba castellanii, actophorin [TaxId: 5755]}
          Length = 134

 Score = 49.5 bits (118), Expect = 3e-09
 Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 6/92 (6%)

Query: 9  SKSIKSAYEDVRSDASQTQWAVFKYQDSKISCT-----ARGQSFDKFRAQFRPDERSFGY 63
          S      + +++    Q ++  FK   S              +++ F++Q    +  +  
Sbjct: 5  SDDCVQKFNELKLG-HQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAI 63

Query: 64 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAK 95
                 +  +R K   I W      +  +  
Sbjct: 64 FDYEFQVDGGQRNKITFILWAPDSAPIKSKMM 95


>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
           {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
          Length = 166

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 22/108 (20%)

Query: 9   SKSIKSAYEDVRSDASQT--------QWAVFKYQD----------SKISCTARGQS---- 46
           S  +   + D++   S T        +  +F   +           +I     GQ+    
Sbjct: 8   SDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDP 67

Query: 47  FDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRA 94
           +  F       +  +         + S++   + I W      +  + 
Sbjct: 68  YATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKM 115


>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 318

 Score = 26.5 bits (58), Expect = 1.2
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 16  YEDVRSDASQTQWAVFK---YQDSKISCTARGQSFDKFRAQFRPDERSFGY-LRMMTGDE 71
              V  DA     A        + K       +S    R  F       G+ +      E
Sbjct: 166 DAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRE 225

Query: 72  MSRRLKFLLITWVGC 86
            S  L+ LL+  V  
Sbjct: 226 TSGNLENLLLAVVKS 240


>d1n7oa2 b.24.1.1 (A:815-890) Hyaluronate lyase {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 76

 Score = 24.1 bits (52), Expect = 3.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 22 DASQTQWAVFKYQDSK 37
          DA Q  W + KY DS 
Sbjct: 15 DAKQGVWGIVKYDDSV 30


>d1f1sa3 b.24.1.1 (A:912-984) Hyaluronate lyase {Streptococcus
          agalactiae [TaxId: 1311]}
          Length = 73

 Score = 23.8 bits (51), Expect = 3.5
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 22 DASQTQWAVFKYQDSK 37
          D +   WAV K+ + +
Sbjct: 16 DKNSQTWAVIKHDNQE 31


>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal
           domain {Spiny lobster (Panulirus interruptus) [TaxId:
           6735]}
          Length = 255

 Score = 24.8 bits (54), Expect = 3.9
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 8/31 (25%)

Query: 33  YQDSKISCTARGQSFDKFRAQFRPDERSFGY 63
           Y  +   C   G+++        PD R  GY
Sbjct: 204 YGGTHAQCGVHGEAY--------PDNRPLGY 226


>d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio
           vulgaris [TaxId: 881]}
          Length = 69

 Score = 22.7 bits (49), Expect = 9.9
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 114 CEVGVIQRAKVSIDKALVKSV 134
           C    ++  K+ I    V ++
Sbjct: 23  CPTAAVRPTKLEIGDKKVNTI 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.406 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 471,212
Number of extensions: 19193
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 14
Length of query: 136
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,364,116
Effective search space: 81846960
Effective search space used: 81846960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.3 bits)