BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3622
(964 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WIX|A Chain A, The Solution Structure Of Rsgi Ruh-026, Conserved Domain
Of Hook1 Protein From Mouse
Length = 164
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 12/147 (8%)
Query: 19 LVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLR-----NASVRIK 73
L+ WL + D + L +G+ + +V ID +S + ++ N ++
Sbjct: 14 LIIWLQT-FKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKAS 72
Query: 74 NFNTIVKNIKSLYEEELCQIVL--VLPDVLIIGREPESKQGLENMKXXXXXXXGCAVQCP 131
N ++ I S Y E L Q + ++PD + + E +E + GCAV C
Sbjct: 73 NLKKVLHGITSYYHEFLGQQISEELIPD---LNQITECADPVE-LGRLLQLILGCAVNCE 128
Query: 132 NKETFIERIKELPVESQHALVDCIKQV 158
K+ I+ I L QH ++ I+++
Sbjct: 129 KKQEHIKNIMTLEESVQHVVMTAIQEL 155
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 465 DELDNMNREKQKLEWKNKE-LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
DE+ +N+ ++L + E ++++ I K S + I+ L L
Sbjct: 109 DEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168
Query: 524 SKAE---SLDKLTNK-LESMEKEHVSLTK-QIEDQENEL--KKYNDLKREMDELDSKYQV 576
S+ LD T K L+ + K SL +IED E+ K+ R L +
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV-- 226
Query: 577 DKNTLSVLQNDLVNEK--LKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKK 634
++ L+V++ D +N LKT + N +D GL D+ + I+E P LNA+
Sbjct: 227 -RDMLTVVKADRINTDIVLKTMEVLN-IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAA 284
Query: 635 KLGVE 639
LGVE
Sbjct: 285 SLGVE 289
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 216 LAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKAL 275
LA A+ + +LR L E E DE + ++ NR +LELR EA+ +
Sbjct: 997 LAQAQAEGRCRLRPGALGGAADVEDTKEGEDEAKRYQEFQNRQVQSLLELR-EAQ----V 1051
Query: 276 ESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEEN 327
++E QR R+E LRQ + + E+ L DAN + ++L E N
Sbjct: 1052 DAEAQR-------------RLEHLRQALQRLREVVL--DANTTQFKRLKEMN 1088
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 465 DELDNMNREKQKLEWKNKE-LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
DE+ +N+ ++L + E ++++ I K S + I+ L L
Sbjct: 109 DEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168
Query: 524 SKAE---SLDKLTNK-LESMEKEHVSLTK-QIEDQENEL--KKYNDLKREMDELDSKYQV 576
S+ LD T K L+ + K SL +IED E+ K+ R L +
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV-- 226
Query: 577 DKNTLSVLQNDLVNEK--LKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKK 634
++ L+V++ D +N LKT + N +D GL D+ + I+E P LNA+
Sbjct: 227 -RDMLTVVKADRINTDIVLKTMEVLN-IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAA 284
Query: 635 KLGVE 639
LGVE
Sbjct: 285 SLGVE 289
>pdb|2Q9R|A Chain A, Crystal Structure Of A Duf416 Family Protein (Sbal_3149)
From Shewanella Baltica Os155 At 1.91 A Resolution
Length = 200
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 819 DAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHE------LLTHSLEDKDHYH---E 869
DA+ A+S L Q K+E+D + + ++ +A Y E L+ +L+D H E
Sbjct: 97 DAVVAISTLLGAIQGKIEEDIVNISKLSSSTVANYIEAISDVDLVDEALDDFVFAHEVXE 156
Query: 870 EEKNFSDKLNNLHRQKEKLEEKIMEHYRK 898
EEK + L + + K+ ++++ RK
Sbjct: 157 EEKELQNSLLEIIEENPKITAELVKGLRK 185
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 532 LTNKLESMEKEHVSLTKQIEDQENELKKYN----DLKREMDELDSKYQVDKNTL 581
+ NK+E + + + +T +EDQ N+LK+Y + K +D+L+ +Q+ + L
Sbjct: 383 IQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEAL 436
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 465 DELDNMNREKQKLEWKNKE-LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
DE+ +N+ ++L + E ++++ I K S + I+ L L
Sbjct: 109 DEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR 168
Query: 524 SKAE---SLDKLTNK-LESMEKEHVSLTK-QIEDQENEL--KKYNDLKREMDELDSKYQV 576
S+ LD T K L+ + K SL +IED E+ K+ R L +
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTGRIAIRLTKRV-- 226
Query: 577 DKNTLSVLQNDLVNEK--LKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKK 634
++ L+V++ D +N LKT + N +D GL D+ + I+E P LNA+
Sbjct: 227 -RDMLTVVKADRINTDIVLKTMEVLN-IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAA 284
Query: 635 KLGVE 639
LGVE
Sbjct: 285 SLGVE 289
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 465 DELDNMNREKQKLEWKNKE-LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
DE+ +N+ ++L + E ++++ I K S + I+ L L
Sbjct: 109 DEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATVRSGLLSSPLR 168
Query: 524 SKAE---SLDKLTNK-LESMEKEHVSLTK-QIEDQENEL--KKYNDLKREMDELDSKYQV 576
S+ LD T K L+ + K SL +IED E+ K+ R L +
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV-- 226
Query: 577 DKNTLSVLQNDLVNEK--LKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKK 634
++ L+V++ D +N LKT + N +D GL D+ + I+E P LNA+
Sbjct: 227 -RDMLTVVKADRINTDIVLKTMEVLN-IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAA 284
Query: 635 KLGVE 639
LGVE
Sbjct: 285 SLGVE 289
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 465 DELDNMNREKQKLEWKNKE-LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
DE+ +N+ ++L + E ++++ I K S + I+ L L
Sbjct: 109 DEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGSTTRSGLLSSPLR 168
Query: 524 SKAE---SLDKLTNK-LESMEKEHVSLTK-QIEDQENEL--KKYNDLKREMDELDSKYQV 576
S+ LD T K L+ + K SL +IED E+ K+ R L +
Sbjct: 169 SRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRV-- 226
Query: 577 DKNTLSVLQNDLVNEK--LKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKK 634
++ L+V++ D +N LKT + N +D GL D+ + I+E P LNA+
Sbjct: 227 -RDMLTVVKADRINTDIVLKTMEVLN-IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAA 284
Query: 635 KLGVE 639
LGVE
Sbjct: 285 SLGVE 289
>pdb|1VCS|A Chain A, Solution Structure Of Rsgi Ruh-009, An N-Terminal Domain
Of Vti1a [mus Musculus]
Length = 102
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 214 QHLAVELADLKSKL-RKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSG 272
Q AV A++ SK+ R RL +EK + + +LE + L+ +M E+ E+ ++R
Sbjct: 12 QDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRG- 70
Query: 273 KALESEIQRYKDKLTDLE--YYKSRV 296
+ ++ YK ++ LE + +SR+
Sbjct: 71 -MYSNRMRSYKQEMGKLETDFKRSRI 95
>pdb|1XI4|A Chain A, Clathrin D6 Coat
pdb|1XI4|B Chain B, Clathrin D6 Coat
pdb|1XI4|C Chain C, Clathrin D6 Coat
pdb|1XI4|D Chain D, Clathrin D6 Coat
pdb|1XI4|E Chain E, Clathrin D6 Coat
pdb|1XI4|F Chain F, Clathrin D6 Coat
pdb|1XI4|G Chain G, Clathrin D6 Coat
pdb|1XI4|H Chain H, Clathrin D6 Coat
pdb|1XI4|I Chain I, Clathrin D6 Coat
pdb|1XI5|A Chain A, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|B Chain B, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|C Chain C, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|D Chain D, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|E Chain E, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|F Chain F, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|G Chain G, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|H Chain H, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|I Chain I, Clathrin D6 Coat With Auxilin J-Domain
pdb|3IYV|A Chain A, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|B Chain B, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|C Chain C, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|D Chain D, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|E Chain E, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|F Chain F, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|G Chain G, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|H Chain H, Clathrin D6 Coat As Full-Length Triskelions
pdb|3IYV|I Chain I, Clathrin D6 Coat As Full-Length Triskelions
Length = 1630
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 706 YESVVKEIKVLKSTLRDVKNE-NKTVKEQYSQLKVS---YESLQAEMEQL-KFESHSLSN 760
Y S VK++ ++K LR V+N NK+V E + L ++ Y++L+ ++ F++ SL+
Sbjct: 1438 YFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQ 1497
Query: 761 LRAEHSKLKDDFRI---LFTANEKLK 783
R E +L + RI LF N + K
Sbjct: 1498 -RLEKHELIEFRRIAAYLFKGNNRWK 1522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.126 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,324,483
Number of Sequences: 62578
Number of extensions: 928131
Number of successful extensions: 3593
Number of sequences better than 100.0: 153
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 3255
Number of HSP's gapped (non-prelim): 382
length of query: 964
length of database: 14,973,337
effective HSP length: 108
effective length of query: 856
effective length of database: 8,214,913
effective search space: 7031965528
effective search space used: 7031965528
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)