Query psy3622
Match_columns 964
No_of_seqs 502 out of 1170
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:17:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4643|consensus 100.0 5.9E-49 1.3E-53 451.3 60.6 839 73-962 2-1046(1195)
2 PF05622 HOOK: HOOK protein; 100.0 1.6E-53 3.4E-58 520.9 9.5 288 13-305 6-343 (713)
3 KOG0161|consensus 99.9 1.9E-19 4.1E-24 229.3 84.2 517 306-892 1324-1880(1930)
4 KOG4643|consensus 99.9 1E-20 2.2E-25 219.6 63.3 413 503-930 174-641 (1195)
5 KOG0161|consensus 99.9 1.1E-17 2.3E-22 213.4 86.9 496 400-902 1201-1791(1930)
6 PF01576 Myosin_tail_1: Myosin 99.9 1.5E-23 3.3E-28 259.2 -1.3 506 306-854 266-858 (859)
7 PF01576 Myosin_tail_1: Myosin 99.7 5.1E-19 1.1E-23 219.1 0.0 513 383-903 127-734 (859)
8 COG1196 Smc Chromosome segrega 99.6 1.7E-07 3.7E-12 122.1 90.0 74 208-290 152-226 (1163)
9 KOG4674|consensus 99.6 4.2E-07 9E-12 116.0 87.3 106 182-289 594-708 (1822)
10 TIGR02169 SMC_prok_A chromosom 99.6 9.3E-07 2E-11 116.8 90.7 62 209-274 151-212 (1164)
11 TIGR02168 SMC_prok_B chromosom 99.5 2.2E-06 4.7E-11 113.4 91.3 57 209-276 153-209 (1179)
12 TIGR00606 rad50 rad50. This fa 99.5 2.6E-06 5.6E-11 112.5 89.9 197 506-702 744-960 (1311)
13 PRK02224 chromosome segregatio 99.4 2.2E-06 4.7E-11 109.7 74.9 73 381-454 259-331 (880)
14 TIGR02168 SMC_prok_B chromosom 99.4 2.3E-05 5E-10 103.8 89.0 25 872-896 1003-1027(1179)
15 PRK02224 chromosome segregatio 99.3 3.4E-05 7.3E-10 98.9 71.6 16 734-749 574-589 (880)
16 TIGR00606 rad50 rad50. This fa 99.3 5.4E-05 1.2E-09 100.3 94.0 22 374-395 472-493 (1311)
17 PRK03918 chromosome segregatio 99.2 0.00012 2.7E-09 93.8 74.0 14 112-125 35-48 (880)
18 KOG4674|consensus 99.2 0.00014 3E-09 93.7 87.3 198 695-894 757-976 (1822)
19 PF10174 Cast: RIM-binding pro 99.1 9.7E-05 2.1E-09 90.1 79.6 85 472-556 301-386 (775)
20 PF10174 Cast: RIM-binding pro 99.1 0.00016 3.5E-09 88.1 66.5 20 306-325 5-24 (775)
21 TIGR02169 SMC_prok_A chromosom 99.1 0.00044 9.6E-09 91.6 89.2 35 240-274 171-205 (1164)
22 COG1196 Smc Chromosome segrega 99.0 0.00073 1.6E-08 88.6 86.7 29 274-302 197-225 (1163)
23 KOG0933|consensus 98.9 0.00047 1E-08 82.9 77.5 182 641-829 678-860 (1174)
24 PRK03918 chromosome segregatio 98.6 0.0071 1.5E-07 77.7 81.5 10 211-220 145-154 (880)
25 PF07888 CALCOCO1: Calcium bin 98.3 0.017 3.7E-07 67.4 45.3 11 509-519 223-233 (546)
26 PRK04863 mukB cell division pr 98.3 0.048 1E-06 72.1 84.0 65 209-280 277-341 (1486)
27 KOG0976|consensus 98.3 0.023 5.1E-07 66.9 56.3 60 832-892 447-506 (1265)
28 KOG0976|consensus 98.1 0.048 1E-06 64.4 58.8 60 364-431 83-142 (1265)
29 PF12128 DUF3584: Protein of u 98.1 0.13 2.9E-06 67.8 86.2 75 740-814 772-846 (1201)
30 PF00038 Filament: Intermediat 98.0 0.043 9.3E-07 61.4 38.9 69 484-552 23-93 (312)
31 PF12128 DUF3584: Protein of u 98.0 0.15 3.2E-06 67.5 74.8 43 510-552 604-646 (1201)
32 PF07888 CALCOCO1: Calcium bin 98.0 0.07 1.5E-06 62.4 45.4 28 406-433 161-188 (546)
33 KOG0971|consensus 98.0 0.087 1.9E-06 63.3 42.9 174 235-438 251-432 (1243)
34 KOG0996|consensus 98.0 0.12 2.6E-06 64.2 74.3 52 700-751 823-877 (1293)
35 KOG0977|consensus 98.0 0.051 1.1E-06 63.5 36.3 91 768-858 273-370 (546)
36 PF09730 BicD: Microtubule-ass 97.9 0.13 2.7E-06 62.6 43.2 139 400-552 32-181 (717)
37 PF14662 CCDC155: Coiled-coil 97.9 0.019 4.2E-07 57.6 27.2 128 704-848 60-190 (193)
38 PRK01156 chromosome segregatio 97.8 0.27 5.8E-06 63.4 80.4 35 780-814 684-718 (895)
39 KOG0962|consensus 97.8 0.29 6.3E-06 62.4 73.8 315 506-834 740-1105(1294)
40 KOG0977|consensus 97.7 0.12 2.5E-06 60.6 33.8 171 388-571 43-217 (546)
41 PF05557 MAD: Mitotic checkpoi 97.7 5.2E-05 1.1E-09 94.4 6.8 16 559-574 258-273 (722)
42 PF15070 GOLGA2L5: Putative go 97.7 0.15 3.2E-06 61.7 35.4 30 864-893 281-310 (617)
43 PF00261 Tropomyosin: Tropomyo 97.6 0.057 1.2E-06 57.9 28.5 93 502-604 137-229 (237)
44 PF00038 Filament: Intermediat 97.5 0.27 5.8E-06 55.1 39.9 25 551-575 11-35 (312)
45 PF05557 MAD: Mitotic checkpoi 97.4 0.00077 1.7E-08 84.0 12.5 40 535-574 258-297 (722)
46 KOG0933|consensus 97.4 0.67 1.4E-05 57.0 75.2 47 703-749 814-860 (1174)
47 PF15070 GOLGA2L5: Putative go 97.4 0.64 1.4E-05 56.4 48.0 26 306-331 38-63 (617)
48 PF14662 CCDC155: Coiled-coil 97.3 0.23 4.9E-06 50.1 26.7 23 874-896 170-192 (193)
49 KOG0996|consensus 97.3 0.92 2E-05 56.8 76.7 17 117-133 209-225 (1293)
50 PRK04778 septation ring format 97.2 1.1 2.3E-05 54.6 46.1 51 404-454 277-327 (569)
51 PF05622 HOOK: HOOK protein; 97.1 0.00038 8.1E-09 86.6 5.1 53 275-327 279-331 (713)
52 PF05701 WEMBL: Weak chloropla 97.1 1.1 2.4E-05 53.7 62.1 37 778-814 380-416 (522)
53 PF05483 SCP-1: Synaptonemal c 97.1 1.1 2.4E-05 53.0 82.7 105 794-898 611-718 (786)
54 PHA02562 46 endonuclease subun 97.0 1.1 2.3E-05 54.7 33.2 35 819-853 358-395 (562)
55 PF00261 Tropomyosin: Tropomyo 97.0 0.7 1.5E-05 49.5 28.4 49 504-552 167-215 (237)
56 PRK04778 septation ring format 96.9 1.6 3.5E-05 53.0 51.6 87 500-588 166-265 (569)
57 KOG0971|consensus 96.9 1.7 3.7E-05 52.9 46.7 196 382-588 233-440 (1243)
58 KOG0964|consensus 96.9 1.9 4E-05 53.1 77.9 63 372-435 264-326 (1200)
59 PF09726 Macoilin: Transmembra 96.8 0.81 1.8E-05 56.4 29.2 67 374-441 419-499 (697)
60 PF09726 Macoilin: Transmembra 96.8 1.4 3.1E-05 54.3 31.3 115 780-898 541-658 (697)
61 PF00307 CH: Calponin homology 96.8 0.0091 2E-07 55.3 9.9 68 17-84 2-74 (108)
62 PF10473 CENP-F_leu_zip: Leuci 96.7 0.35 7.6E-06 46.8 20.1 105 448-552 21-126 (140)
63 KOG0612|consensus 96.7 3.3 7.1E-05 52.5 45.8 27 113-139 173-199 (1317)
64 PF09755 DUF2046: Uncharacteri 96.7 1.4 3E-05 48.1 31.3 66 642-707 29-101 (310)
65 KOG4673|consensus 96.6 2.3 5.1E-05 50.2 54.0 26 867-892 737-762 (961)
66 PRK11637 AmiB activator; Provi 96.6 2 4.3E-05 50.4 29.5 25 371-395 45-69 (428)
67 PF15066 CAGE1: Cancer-associa 96.5 1.5 3.3E-05 49.6 26.1 108 636-755 313-420 (527)
68 PF05701 WEMBL: Weak chloropla 96.5 2.8 6.1E-05 50.3 50.4 67 768-834 286-352 (522)
69 KOG4673|consensus 96.5 2.9 6.3E-05 49.4 67.0 34 290-326 405-438 (961)
70 PRK11637 AmiB activator; Provi 96.3 3.4 7.5E-05 48.4 29.2 45 503-547 181-225 (428)
71 PF12718 Tropomyosin_1: Tropom 96.2 1.4 2.9E-05 43.3 21.1 130 701-830 4-140 (143)
72 COG1579 Zn-ribbon protein, pos 96.1 1.2 2.6E-05 47.1 21.6 83 806-892 90-172 (239)
73 PF09755 DUF2046: Uncharacteri 96.0 3.2 6.9E-05 45.4 30.8 104 369-480 23-128 (310)
74 COG1579 Zn-ribbon protein, pos 95.9 2.9 6.3E-05 44.3 23.4 49 504-552 101-149 (239)
75 PRK01156 chromosome segregatio 95.9 8.7 0.00019 49.7 82.9 14 209-222 147-160 (895)
76 PHA02562 46 endonuclease subun 95.9 4.7 0.0001 49.0 29.0 14 799-812 359-372 (562)
77 PF05483 SCP-1: Synaptonemal c 95.8 6.3 0.00014 47.0 82.1 103 502-610 394-502 (786)
78 KOG0250|consensus 95.6 9.9 0.00021 48.1 58.2 36 98-135 62-97 (1074)
79 KOG0994|consensus 95.5 10 0.00023 47.7 50.3 39 504-542 1424-1462(1758)
80 PF06294 DUF1042: Domain of Un 95.4 0.018 3.9E-07 57.3 4.5 59 19-78 1-60 (158)
81 KOG0995|consensus 95.4 7.8 0.00017 45.5 37.4 51 502-552 435-485 (581)
82 smart00033 CH Calponin homolog 95.2 0.034 7.5E-07 50.8 5.5 69 17-85 3-74 (103)
83 PRK09039 hypothetical protein; 95.2 4.9 0.00011 45.5 23.5 66 769-834 115-180 (343)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.1 3.4 7.4E-05 39.9 19.0 23 835-857 103-125 (132)
85 PF09730 BicD: Microtubule-ass 94.9 13 0.00028 45.8 59.0 29 640-668 583-611 (717)
86 KOG4593|consensus 94.9 12 0.00025 45.1 60.0 20 785-804 601-620 (716)
87 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.9 4 8.6E-05 39.5 19.5 32 817-848 96-130 (132)
88 PF12718 Tropomyosin_1: Tropom 94.8 4.4 9.6E-05 39.7 21.0 94 721-821 3-96 (143)
89 PF10473 CENP-F_leu_zip: Leuci 94.7 4.5 9.8E-05 39.3 21.2 51 761-811 50-100 (140)
90 cd00014 CH Calponin homology d 94.7 0.098 2.1E-06 48.2 7.1 67 17-84 4-73 (107)
91 KOG1029|consensus 94.6 14 0.00031 44.6 35.6 31 645-675 435-465 (1118)
92 PF13514 AAA_27: AAA domain 94.5 24 0.00051 46.8 72.5 16 227-242 128-143 (1111)
93 PRK09039 hypothetical protein; 94.5 10 0.00022 43.0 23.8 20 702-721 44-63 (343)
94 PF06160 EzrA: Septation ring 94.3 17 0.00036 44.2 56.5 74 500-573 162-241 (560)
95 KOG0250|consensus 94.3 21 0.00046 45.2 67.3 31 645-675 659-689 (1074)
96 PF04849 HAP1_N: HAP1 N-termin 94.2 10 0.00023 41.6 27.2 139 368-537 162-300 (306)
97 PF14915 CCDC144C: CCDC144C pr 94.2 10 0.00022 41.1 37.7 81 651-735 88-175 (305)
98 PF08317 Spc7: Spc7 kinetochor 94.2 5.2 0.00011 45.0 20.7 24 700-723 159-182 (325)
99 PF09789 DUF2353: Uncharacteri 94.0 12 0.00027 41.4 23.7 30 863-892 190-219 (319)
100 PF13851 GAS: Growth-arrest sp 93.9 9.3 0.0002 39.8 23.7 70 463-532 98-169 (201)
101 PF07111 HCR: Alpha helical co 93.9 19 0.00042 43.4 67.4 45 559-603 339-383 (739)
102 PF04849 HAP1_N: HAP1 N-termin 93.8 13 0.00027 40.9 22.9 50 785-834 214-263 (306)
103 PF05667 DUF812: Protein of un 93.8 21 0.00045 43.4 34.3 45 10-57 3-50 (594)
104 PF09728 Taxilin: Myosin-like 93.7 14 0.0003 41.2 38.5 76 780-855 226-304 (309)
105 PF14915 CCDC144C: CCDC144C pr 93.5 13 0.00028 40.3 36.3 24 835-858 219-242 (305)
106 KOG0980|consensus 93.4 26 0.00056 43.3 30.2 49 765-813 468-516 (980)
107 PRK04863 mukB cell division pr 93.4 40 0.00087 45.6 80.3 14 559-572 653-666 (1486)
108 PF06785 UPF0242: Uncharacteri 93.4 13 0.00027 40.7 20.3 42 731-772 74-115 (401)
109 PF12325 TMF_TATA_bd: TATA ele 93.2 4.3 9.3E-05 38.4 14.9 89 501-589 18-106 (120)
110 PF15066 CAGE1: Cancer-associa 93.2 19 0.00042 41.2 26.9 107 374-499 318-424 (527)
111 KOG0980|consensus 93.2 28 0.00061 43.0 31.3 50 763-812 473-522 (980)
112 PF12325 TMF_TATA_bd: TATA ele 93.1 3.1 6.8E-05 39.3 13.7 39 713-751 18-56 (120)
113 PF07111 HCR: Alpha helical co 93.0 26 0.00057 42.3 59.8 33 644-676 377-409 (739)
114 COG4372 Uncharacterized protei 93.0 18 0.00039 40.3 31.1 133 420-552 106-242 (499)
115 smart00787 Spc7 Spc7 kinetocho 92.8 14 0.0003 41.3 20.7 22 700-721 154-175 (312)
116 KOG0978|consensus 92.4 33 0.00073 41.9 70.7 103 703-815 495-597 (698)
117 KOG0946|consensus 92.3 35 0.00076 41.9 28.8 31 800-830 801-831 (970)
118 KOG1853|consensus 92.1 15 0.00032 38.5 18.0 7 943-949 313-319 (333)
119 KOG0612|consensus 91.9 48 0.001 42.7 63.8 54 399-452 585-638 (1317)
120 PF05667 DUF812: Protein of un 90.7 47 0.001 40.5 37.2 42 38-87 2-43 (594)
121 PF09789 DUF2353: Uncharacteri 90.6 32 0.00069 38.2 25.9 111 462-575 76-206 (319)
122 COG1340 Uncharacterized archae 90.6 30 0.00064 37.8 29.4 34 864-897 209-242 (294)
123 PF10481 CENP-F_N: Cenp-F N-te 90.4 11 0.00024 40.1 15.3 51 502-552 77-127 (307)
124 PF15254 CCDC14: Coiled-coil d 90.3 40 0.00088 41.2 21.8 66 503-568 484-549 (861)
125 KOG0946|consensus 90.1 56 0.0012 40.2 28.6 16 67-82 275-291 (970)
126 PF10146 zf-C4H2: Zinc finger- 90.1 14 0.0003 39.3 16.2 100 728-852 4-103 (230)
127 KOG0999|consensus 90.0 45 0.00097 39.0 70.1 140 401-554 106-256 (772)
128 PF08614 ATG16: Autophagy prot 90.0 3.8 8.2E-05 42.4 12.0 63 460-522 118-181 (194)
129 KOG2129|consensus 89.9 39 0.00084 38.1 25.7 35 641-675 51-85 (552)
130 PF11559 ADIP: Afadin- and alp 89.8 22 0.00048 35.1 17.7 89 764-852 60-148 (151)
131 KOG0963|consensus 89.6 53 0.0012 39.3 39.1 84 506-589 249-341 (629)
132 PF05010 TACC: Transforming ac 89.5 29 0.00064 36.1 27.2 47 700-746 65-111 (207)
133 COG4942 Membrane-bound metallo 89.1 48 0.0011 38.1 29.5 73 373-446 38-110 (420)
134 PF08581 Tup_N: Tup N-terminal 88.5 13 0.00029 32.3 12.2 71 778-848 5-75 (79)
135 PF10481 CENP-F_N: Cenp-F N-te 88.0 26 0.00056 37.4 16.1 66 751-816 55-120 (307)
136 PF13851 GAS: Growth-arrest sp 88.0 37 0.00079 35.4 26.3 75 784-858 93-171 (201)
137 COG4372 Uncharacterized protei 87.6 53 0.0011 36.8 33.9 33 724-756 143-175 (499)
138 KOG0995|consensus 87.6 68 0.0015 38.1 46.7 21 375-395 223-243 (581)
139 PF09787 Golgin_A5: Golgin sub 87.4 74 0.0016 38.3 28.1 49 811-859 287-335 (511)
140 PF04111 APG6: Autophagy prote 87.4 9 0.00019 42.8 13.4 31 780-810 60-90 (314)
141 PF08614 ATG16: Autophagy prot 87.2 5 0.00011 41.6 10.7 26 839-864 160-185 (194)
142 KOG0964|consensus 86.9 97 0.0021 39.1 79.4 44 99-150 143-186 (1200)
143 KOG1853|consensus 86.8 45 0.00097 35.1 22.4 103 727-829 54-157 (333)
144 PF15619 Lebercilin: Ciliary p 86.8 42 0.0009 34.7 25.4 49 702-753 55-103 (194)
145 KOG4593|consensus 86.4 87 0.0019 38.1 61.9 40 535-574 276-315 (716)
146 KOG0804|consensus 86.1 51 0.0011 37.8 18.0 30 829-858 420-449 (493)
147 PF00769 ERM: Ezrin/radixin/mo 85.7 47 0.001 35.8 17.4 15 651-665 186-200 (246)
148 KOG0963|consensus 85.5 91 0.002 37.4 46.4 23 306-328 68-90 (629)
149 PF00769 ERM: Ezrin/radixin/mo 85.3 58 0.0013 35.1 18.3 18 436-453 11-28 (246)
150 KOG1003|consensus 83.9 54 0.0012 33.5 24.8 29 576-604 169-197 (205)
151 KOG0994|consensus 83.8 1.4E+02 0.0031 38.3 54.6 23 874-896 1729-1751(1758)
152 PF11559 ADIP: Afadin- and alp 83.1 50 0.0011 32.6 16.3 21 502-522 129-149 (151)
153 PF04111 APG6: Autophagy prote 82.9 27 0.00059 39.0 14.6 17 702-718 14-30 (314)
154 PF06005 DUF904: Protein of un 82.8 24 0.00052 30.2 10.8 13 811-823 52-64 (72)
155 KOG4360|consensus 82.6 1.1E+02 0.0023 35.9 23.0 64 761-824 238-301 (596)
156 PRK10884 SH3 domain-containing 82.5 22 0.00048 37.1 12.7 23 874-896 151-173 (206)
157 PF11971 CAMSAP_CH: CAMSAP CH 82.4 1.4 3.1E-05 39.0 3.4 60 30-93 10-72 (85)
158 PF15397 DUF4618: Domain of un 81.3 84 0.0018 33.9 25.4 96 372-478 12-108 (258)
159 PF06160 EzrA: Septation ring 81.1 1.4E+02 0.003 36.4 55.4 51 767-817 376-426 (560)
160 TIGR01843 type_I_hlyD type I s 80.9 1.2E+02 0.0025 35.2 23.9 22 657-678 77-98 (423)
161 KOG1899|consensus 80.7 1.4E+02 0.0029 35.9 20.1 43 839-882 269-311 (861)
162 PRK15422 septal ring assembly 80.4 36 0.00077 29.4 10.7 48 780-827 28-75 (79)
163 PF15294 Leu_zip: Leucine zipp 79.8 91 0.002 34.0 16.4 77 380-456 86-172 (278)
164 PF09738 DUF2051: Double stran 79.6 1.1E+02 0.0023 34.1 19.7 31 720-750 79-109 (302)
165 KOG1899|consensus 79.4 1.5E+02 0.0032 35.6 22.2 152 369-534 107-259 (861)
166 PF09728 Taxilin: Myosin-like 79.4 1.1E+02 0.0024 34.1 41.5 71 704-791 237-307 (309)
167 KOG0982|consensus 79.1 1.2E+02 0.0027 34.5 24.8 121 376-499 218-345 (502)
168 TIGR01843 type_I_hlyD type I s 79.1 1.3E+02 0.0028 34.8 22.6 15 656-670 83-97 (423)
169 COG5185 HEC1 Protein involved 78.9 1.3E+02 0.0029 34.7 34.8 37 636-672 483-519 (622)
170 PF10168 Nup88: Nuclear pore c 78.8 77 0.0017 39.7 17.8 55 839-893 609-663 (717)
171 COG3074 Uncharacterized protei 77.9 40 0.00086 28.2 10.4 47 780-826 28-74 (79)
172 PF13870 DUF4201: Domain of un 77.9 84 0.0018 31.9 23.5 29 691-719 43-71 (177)
173 KOG4360|consensus 77.8 1.4E+02 0.0029 35.1 17.6 26 507-532 269-294 (596)
174 COG4942 Membrane-bound metallo 77.8 1.4E+02 0.0031 34.5 32.7 19 931-949 298-318 (420)
175 PF02183 HALZ: Homeobox associ 77.3 7.7 0.00017 29.9 5.5 38 768-805 3-40 (45)
176 COG1340 Uncharacterized archae 77.2 1.2E+02 0.0026 33.3 33.0 43 449-491 205-247 (294)
177 PF10205 KLRAQ: Predicted coil 77.1 48 0.001 30.3 11.2 68 769-836 4-71 (102)
178 KOG0804|consensus 76.9 1E+02 0.0022 35.5 16.2 73 785-857 348-423 (493)
179 KOG0978|consensus 76.2 2E+02 0.0044 35.5 69.0 20 306-325 99-118 (698)
180 PRK10884 SH3 domain-containing 76.0 46 0.00099 34.8 12.6 14 734-747 95-108 (206)
181 TIGR03007 pepcterm_ChnLen poly 75.8 1.8E+02 0.0039 34.7 23.5 22 661-682 161-182 (498)
182 KOG2046|consensus 75.7 6.2 0.00013 40.1 5.9 72 12-85 23-96 (193)
183 PF15254 CCDC14: Coiled-coil d 75.6 2.1E+02 0.0046 35.4 25.8 14 943-956 665-678 (861)
184 KOG1937|consensus 74.0 1.7E+02 0.0038 33.7 33.8 47 10-60 3-52 (521)
185 PRK11281 hypothetical protein; 73.6 3.1E+02 0.0066 36.3 43.3 50 844-893 403-452 (1113)
186 COG4026 Uncharacterized protei 73.5 37 0.0008 35.1 10.7 54 802-859 153-206 (290)
187 PF09304 Cortex-I_coil: Cortex 73.2 77 0.0017 29.2 15.5 46 501-546 53-98 (107)
188 PF11932 DUF3450: Protein of u 72.9 1.2E+02 0.0026 32.7 15.6 62 766-827 38-99 (251)
189 COG4026 Uncharacterized protei 72.8 42 0.00091 34.7 10.9 39 780-818 159-197 (290)
190 KOG0018|consensus 72.3 2.9E+02 0.0064 35.5 68.8 248 641-898 653-944 (1141)
191 PF05010 TACC: Transforming ac 71.9 1.3E+02 0.0029 31.4 29.3 23 802-824 115-137 (207)
192 PF08826 DMPK_coil: DMPK coile 71.4 48 0.001 27.4 9.0 49 750-798 5-53 (61)
193 PF15397 DUF4618: Domain of un 71.2 1.6E+02 0.0034 31.9 28.3 33 866-898 197-229 (258)
194 PF09738 DUF2051: Double stran 69.3 1.9E+02 0.0041 32.1 19.8 59 272-330 107-166 (302)
195 COG2433 Uncharacterized conser 68.7 67 0.0015 38.4 12.9 30 559-588 475-504 (652)
196 COG2433 Uncharacterized conser 67.2 1.1E+02 0.0023 36.9 14.1 16 883-898 632-647 (652)
197 COG0419 SbcC ATPase involved i 66.9 3.9E+02 0.0084 34.8 73.0 7 80-86 9-15 (908)
198 PF10498 IFT57: Intra-flagella 66.5 2.2E+02 0.0048 32.5 16.4 113 780-903 216-328 (359)
199 PF15290 Syntaphilin: Golgi-lo 65.7 1.5E+02 0.0033 32.0 13.6 36 780-815 104-141 (305)
200 PF10498 IFT57: Intra-flagella 65.4 2.5E+02 0.0054 32.1 18.2 12 702-713 196-207 (359)
201 PF06008 Laminin_I: Laminin Do 65.2 2.1E+02 0.0045 31.1 27.9 22 404-425 47-68 (264)
202 COG5185 HEC1 Protein involved 64.3 2.8E+02 0.0061 32.2 40.3 40 400-439 478-517 (622)
203 PF04156 IncA: IncA protein; 64.3 1.7E+02 0.0038 29.8 17.1 13 655-667 82-94 (191)
204 KOG0046|consensus 63.5 12 0.00026 43.4 5.6 79 16-99 511-594 (627)
205 PF06008 Laminin_I: Laminin Do 63.1 2.3E+02 0.0049 30.8 28.5 60 372-432 44-103 (264)
206 PF06818 Fez1: Fez1; InterPro 62.9 2E+02 0.0042 29.9 20.7 39 642-680 12-50 (202)
207 KOG0046|consensus 61.9 6 0.00013 45.8 2.8 44 13-56 387-430 (627)
208 PF06785 UPF0242: Uncharacteri 61.3 2.7E+02 0.0058 31.0 20.0 16 842-857 206-221 (401)
209 PF09744 Jnk-SapK_ap_N: JNK_SA 60.9 1.8E+02 0.004 29.0 17.2 6 767-772 54-59 (158)
210 PLN02939 transferase, transfer 60.7 4.8E+02 0.01 33.8 28.9 103 484-588 231-340 (977)
211 PF13870 DUF4201: Domain of un 59.4 2E+02 0.0044 29.0 22.3 54 839-892 121-175 (177)
212 PRK10929 putative mechanosensi 58.1 5.8E+02 0.012 33.8 38.9 349 368-736 67-429 (1109)
213 PRK10361 DNA recombination pro 56.7 4E+02 0.0087 31.6 24.5 12 906-917 199-211 (475)
214 KOG1962|consensus 56.7 1.6E+02 0.0034 30.9 11.8 54 216-269 149-202 (216)
215 TIGR02449 conserved hypothetic 56.6 1.1E+02 0.0024 25.7 8.6 22 836-857 34-55 (65)
216 COG3883 Uncharacterized protei 56.4 3E+02 0.0064 29.9 24.4 56 374-430 39-94 (265)
217 TIGR03185 DNA_S_dndD DNA sulfu 56.1 4.9E+02 0.011 32.4 35.5 20 875-894 501-520 (650)
218 PF02183 HALZ: Homeobox associ 56.0 50 0.0011 25.5 6.1 30 691-720 6-35 (45)
219 KOG4421|consensus 55.9 2.8E+02 0.0061 30.9 13.9 59 767-825 19-77 (637)
220 PF04949 Transcrip_act: Transc 55.6 2.1E+02 0.0045 28.0 14.5 27 365-391 26-52 (159)
221 PF02403 Seryl_tRNA_N: Seryl-t 55.4 89 0.0019 28.8 9.1 55 764-818 37-94 (108)
222 PF10212 TTKRSYEDQ: Predicted 54.5 4.4E+02 0.0095 31.4 23.7 46 534-585 469-514 (518)
223 KOG1937|consensus 52.3 4.3E+02 0.0094 30.7 32.4 172 641-816 242-428 (521)
224 PF10168 Nup88: Nuclear pore c 51.6 6E+02 0.013 32.0 21.6 15 780-794 603-617 (717)
225 PF06818 Fez1: Fez1; InterPro 51.3 3E+02 0.0066 28.6 20.6 50 839-888 133-185 (202)
226 KOG0239|consensus 50.5 6E+02 0.013 31.7 18.1 18 880-897 297-314 (670)
227 KOG0288|consensus 50.4 4.5E+02 0.0097 30.2 16.3 44 780-823 30-73 (459)
228 PF08647 BRE1: BRE1 E3 ubiquit 49.1 2.1E+02 0.0045 26.0 11.1 76 508-586 5-80 (96)
229 PF09744 Jnk-SapK_ap_N: JNK_SA 48.7 2.9E+02 0.0063 27.6 19.8 13 702-714 8-20 (158)
230 PF11932 DUF3450: Protein of u 47.5 3.9E+02 0.0084 28.7 16.0 8 891-898 153-160 (251)
231 TIGR03185 DNA_S_dndD DNA sulfu 47.4 6.5E+02 0.014 31.3 37.6 19 112-130 40-59 (650)
232 KOG0962|consensus 46.3 8.7E+02 0.019 32.4 80.0 56 839-894 1010-1066(1294)
233 PF05546 She9_MDM33: She9 / Md 46.0 3.7E+02 0.008 28.0 17.5 90 500-589 33-130 (207)
234 TIGR01005 eps_transp_fam exopo 45.4 7.4E+02 0.016 31.4 26.4 21 661-681 194-214 (754)
235 KOG3000|consensus 45.1 22 0.00047 39.0 3.7 37 16-54 17-53 (295)
236 TIGR03752 conj_TIGR03752 integ 44.2 2.5E+02 0.0054 33.0 12.0 7 766-772 83-89 (472)
237 TIGR03752 conj_TIGR03752 integ 43.9 2.4E+02 0.0053 33.1 11.9 17 837-853 123-139 (472)
238 PF04012 PspA_IM30: PspA/IM30 43.1 4.2E+02 0.009 27.8 22.0 16 379-394 29-44 (221)
239 PF15233 SYCE1: Synaptonemal c 42.3 3.2E+02 0.0069 26.2 16.3 57 658-722 3-59 (134)
240 PF07106 TBPIP: Tat binding pr 42.0 3.3E+02 0.0071 27.3 11.5 52 475-526 82-136 (169)
241 PF04728 LPP: Lipoprotein leuc 42.0 1.9E+02 0.0041 23.5 8.2 48 780-827 6-53 (56)
242 PF14197 Cep57_CLD_2: Centroso 41.7 2.2E+02 0.0048 24.2 9.6 31 416-446 5-35 (69)
243 KOG1003|consensus 41.7 4.1E+02 0.009 27.4 27.0 58 779-836 139-196 (205)
244 PF10186 Atg14: UV radiation r 41.2 5.1E+02 0.011 28.2 20.7 14 885-898 146-159 (302)
245 PF10205 KLRAQ: Predicted coil 40.7 2.9E+02 0.0064 25.4 11.2 30 765-794 42-71 (102)
246 PF10234 Cluap1: Clusterin-ass 40.6 5.2E+02 0.011 28.2 18.8 44 694-737 159-202 (267)
247 PF13514 AAA_27: AAA domain 40.4 1E+03 0.023 31.7 86.1 42 642-683 675-716 (1111)
248 PF10805 DUF2730: Protein of u 39.6 2.6E+02 0.0056 25.8 9.4 33 783-815 48-82 (106)
249 COG0419 SbcC ATPase involved i 39.2 9.9E+02 0.021 31.0 80.2 15 132-146 118-132 (908)
250 KOG0249|consensus 39.0 8.4E+02 0.018 30.2 20.6 22 640-661 70-91 (916)
251 PRK09841 cryptic autophosphory 38.3 9.2E+02 0.02 30.4 17.2 7 896-902 407-413 (726)
252 KOG4809|consensus 38.1 7.7E+02 0.017 29.5 25.0 66 373-439 331-403 (654)
253 PF06156 DUF972: Protein of un 37.7 2E+02 0.0044 26.7 8.3 44 729-775 5-48 (107)
254 KOG2129|consensus 37.6 6.8E+02 0.015 28.7 25.7 34 650-683 46-79 (552)
255 KOG0249|consensus 37.5 8.9E+02 0.019 30.0 21.6 22 374-395 43-64 (916)
256 PF03148 Tektin: Tektin family 36.9 7.1E+02 0.015 28.7 39.5 44 255-298 19-64 (384)
257 PF04065 Not3: Not1 N-terminal 36.8 5.5E+02 0.012 27.4 17.2 94 228-336 4-99 (233)
258 PF14988 DUF4515: Domain of un 35.2 5.5E+02 0.012 26.9 27.1 23 835-857 161-183 (206)
259 PF14073 Cep57_CLD: Centrosome 35.0 5E+02 0.011 26.4 20.2 86 501-589 66-151 (178)
260 COG4477 EzrA Negative regulato 35.0 8.6E+02 0.019 29.1 39.7 52 218-269 90-141 (570)
261 KOG4603|consensus 34.7 4.9E+02 0.011 26.2 14.2 25 871-896 158-182 (201)
262 PF05377 FlaC_arch: Flagella a 34.4 2.2E+02 0.0047 23.1 6.7 31 528-558 8-38 (55)
263 PF10224 DUF2205: Predicted co 33.8 3.3E+02 0.0071 23.9 8.8 44 760-803 20-63 (80)
264 PF08172 CASP_C: CASP C termin 33.8 6.4E+02 0.014 27.2 13.1 51 361-419 78-131 (248)
265 cd00632 Prefoldin_beta Prefold 33.6 3.8E+02 0.0082 24.5 13.0 7 802-808 81-87 (105)
266 PF08581 Tup_N: Tup N-terminal 33.5 3.3E+02 0.0072 23.8 12.4 20 700-719 7-26 (79)
267 PF01920 Prefoldin_2: Prefoldi 33.2 2.9E+02 0.0062 25.0 8.8 87 729-815 2-100 (106)
268 PF06156 DUF972: Protein of un 33.1 2.6E+02 0.0057 26.0 8.2 8 839-846 45-52 (107)
269 PF07798 DUF1640: Protein of u 32.9 5.3E+02 0.012 26.1 16.9 25 826-850 127-151 (177)
270 KOG3091|consensus 32.6 9E+02 0.02 28.6 15.4 45 759-803 379-423 (508)
271 COG3750 Uncharacterized protei 32.4 1.5E+02 0.0032 25.7 5.7 52 868-926 13-67 (85)
272 PF11180 DUF2968: Protein of u 32.3 5.8E+02 0.013 26.3 13.7 19 765-783 128-146 (192)
273 PF03915 AIP3: Actin interacti 31.9 8.9E+02 0.019 28.4 18.7 33 463-495 204-236 (424)
274 PF10046 BLOC1_2: Biogenesis o 31.5 4E+02 0.0087 24.2 12.1 32 767-798 32-63 (99)
275 PF07889 DUF1664: Protein of u 31.1 4.8E+02 0.01 25.0 12.5 83 378-471 41-123 (126)
276 KOG2991|consensus 30.5 7E+02 0.015 26.7 25.9 41 794-834 180-232 (330)
277 PF05384 DegS: Sensor protein 30.1 5.7E+02 0.012 25.6 21.9 32 693-724 16-47 (159)
278 COG1382 GimC Prefoldin, chaper 29.7 4.9E+02 0.011 24.7 12.5 17 797-813 83-99 (119)
279 PF08232 Striatin: Striatin fa 29.5 3.9E+02 0.0084 25.9 9.2 8 808-815 21-28 (134)
280 PRK10361 DNA recombination pro 29.3 1E+03 0.022 28.3 25.9 15 880-894 279-293 (475)
281 KOG0239|consensus 28.4 1.3E+03 0.027 29.0 22.7 15 837-851 300-314 (670)
282 PRK13169 DNA replication intia 27.9 3.8E+02 0.0082 25.1 8.3 49 504-552 6-54 (110)
283 PF15450 DUF4631: Domain of un 27.9 1.1E+03 0.024 28.1 52.3 42 440-481 16-57 (531)
284 PRK13169 DNA replication intia 27.8 3.5E+02 0.0076 25.3 8.1 14 836-849 42-55 (110)
285 PRK11519 tyrosine kinase; Prov 27.8 1.3E+03 0.029 29.0 18.0 7 896-902 407-413 (719)
286 PF04880 NUDE_C: NUDE protein, 27.7 93 0.002 31.3 4.6 23 752-774 20-42 (166)
287 PRK09841 cryptic autophosphory 27.7 1.3E+03 0.029 29.0 17.2 27 649-675 269-295 (726)
288 PF05278 PEARLI-4: Arabidopsis 27.7 8.3E+02 0.018 26.6 13.7 92 491-585 171-262 (269)
289 PRK11519 tyrosine kinase; Prov 27.6 1.3E+03 0.029 29.0 18.0 19 777-795 377-395 (719)
290 PF10805 DUF2730: Protein of u 27.1 5E+02 0.011 23.9 10.0 64 794-861 38-103 (106)
291 PF15290 Syntaphilin: Golgi-lo 27.0 8.5E+02 0.018 26.6 13.2 19 536-554 119-137 (305)
292 PF02841 GBP_C: Guanylate-bind 26.9 8.8E+02 0.019 26.7 21.0 52 40-94 5-60 (297)
293 COG4467 Regulator of replicati 26.6 3.3E+02 0.0072 25.1 7.3 29 775-803 6-34 (114)
294 KOG2751|consensus 26.3 1.1E+03 0.023 27.5 16.4 37 780-816 228-264 (447)
295 PRK10869 recombination and rep 26.2 1.2E+03 0.027 28.2 23.8 31 714-744 167-197 (553)
296 PF10211 Ax_dynein_light: Axon 25.8 7.4E+02 0.016 25.5 15.6 14 840-853 166-179 (189)
297 KOG4196|consensus 25.1 2.4E+02 0.0053 26.9 6.5 40 787-826 77-116 (135)
298 PF04799 Fzo_mitofusin: fzo-li 24.6 5.2E+02 0.011 26.2 9.1 27 760-786 141-167 (171)
299 PLN03188 kinesin-12 family pro 24.5 1.8E+03 0.039 29.6 36.6 77 700-779 1158-1241(1320)
300 PF05529 Bap31: B-cell recepto 24.5 5.9E+02 0.013 26.0 10.2 31 794-824 157-187 (192)
301 KOG2264|consensus 24.5 5.2E+02 0.011 30.8 10.2 44 766-809 103-146 (907)
302 TIGR00634 recN DNA repair prot 24.3 1.3E+03 0.029 27.9 26.9 14 730-743 187-200 (563)
303 PF10212 TTKRSYEDQ: Predicted 24.3 1.3E+03 0.028 27.7 16.0 38 702-739 418-455 (518)
304 PRK00888 ftsB cell division pr 24.0 2.8E+02 0.0061 25.6 6.8 44 226-269 28-71 (105)
305 TIGR02894 DNA_bind_RsfA transc 23.9 7.4E+02 0.016 24.8 10.8 69 706-784 82-153 (161)
306 KOG4460|consensus 23.6 1.3E+03 0.029 27.6 16.0 104 795-898 585-692 (741)
307 PF05266 DUF724: Protein of un 23.3 8.3E+02 0.018 25.2 17.1 23 803-825 157-179 (190)
308 PF06548 Kinesin-related: Kine 22.8 1.3E+03 0.027 27.1 21.9 31 702-732 390-424 (488)
309 PRK13694 hypothetical protein; 22.8 2.4E+02 0.0052 24.8 5.5 44 867-917 10-53 (83)
310 TIGR02231 conserved hypothetic 22.6 7.3E+02 0.016 29.9 12.1 13 840-852 155-167 (525)
311 PF04899 MbeD_MobD: MbeD/MobD 22.1 5E+02 0.011 22.2 9.4 16 695-710 19-34 (70)
312 PF07989 Microtub_assoc: Micro 21.9 5.2E+02 0.011 22.3 8.6 64 373-437 7-71 (75)
313 KOG0999|consensus 21.5 1.4E+03 0.031 27.3 65.6 57 374-431 9-65 (772)
314 KOG4005|consensus 21.4 6.3E+02 0.014 26.7 9.2 62 762-823 89-150 (292)
315 PF12240 Angiomotin_C: Angiomo 21.3 8.5E+02 0.018 25.3 10.0 63 488-550 5-87 (205)
316 KOG2991|consensus 21.2 1E+03 0.022 25.5 23.0 15 465-479 217-231 (330)
317 PF03962 Mnd1: Mnd1 family; I 21.2 9.1E+02 0.02 24.8 14.2 28 871-898 144-171 (188)
318 PF15294 Leu_zip: Leucine zipp 20.9 1.1E+03 0.024 25.8 22.0 45 768-812 130-174 (278)
319 KOG3631|consensus 20.9 66 0.0014 34.3 2.2 67 14-84 90-160 (365)
320 PF04012 PspA_IM30: PspA/IM30 20.7 9.7E+02 0.021 25.0 24.2 7 563-569 194-200 (221)
321 PF15030 DUF4527: Protein of u 20.7 1E+03 0.023 25.3 12.8 91 643-748 12-102 (277)
322 PF11180 DUF2968: Protein of u 20.5 9.5E+02 0.021 24.8 13.9 12 797-808 153-164 (192)
323 PF07058 Myosin_HC-like: Myosi 20.3 1.2E+03 0.026 25.8 19.0 19 658-676 4-22 (351)
324 COG5199 SCP1 Calponin [Cytoske 20.2 92 0.002 30.4 2.8 63 20-85 19-83 (178)
325 COG3883 Uncharacterized protei 20.1 1.1E+03 0.025 25.5 27.3 54 403-456 39-92 (265)
No 1
>KOG4643|consensus
Probab=100.00 E-value=5.9e-49 Score=451.35 Aligned_cols=839 Identities=27% Similarity=0.338 Sum_probs=603.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHH
Q psy3622 73 KNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALV 152 (964)
Q Consensus 73 ~Nl~~i~~~i~~yy~e~l~~~~~~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~ 152 (964)
.||..++++|+.||++.+||.|+.+||..+|+.+|.|..|...|..++.++|||||+||+++-||.+|+.++.++++++|
T Consensus 2 ~n~~~~vR~~ke~~ee~lgqli~~lpd~~~lg~~p~s~ng~e~ik~ll~llLg~avqcp~kelfi~riq~ldlete~a~~ 81 (1195)
T KOG4643|consen 2 KNFECVVRNMKETDEEGLGQLIIELPDDDMLGSTPSSSNGEEAIKQLLQLLLGSAVQCPTKELFIQRIQILDLETEMAQM 81 (1195)
T ss_pred ccHHHHHHHHHHHHHHhccceeEecCchhhhccCccccchHHHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhHHHHHHH
Confidence 59999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccccCcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------CC------
Q psy3622 153 DCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRN-------------------PS------ 207 (964)
Q Consensus 153 ~~Iq~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ErD~~~~~~~~l~~~~~-------------------~~------ 207 (964)
..|++|++....|++.+|.+...+..++.|++.++.+|+..+-.|.+..+..+ ++
T Consensus 82 ~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~ 161 (1195)
T KOG4643|consen 82 RTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELY 161 (1195)
T ss_pred HHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCC
Confidence 99999999999999999999888877889999999999987777766543310 11
Q ss_pred C-----CChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 208 I-----GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRY 282 (964)
Q Consensus 208 ~-----~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~l 282 (964)
. ......||.+++||+++|||++|+|++||.+.|.+++.+|+.++.+++++++++..+...|.++..|..++..+
T Consensus 162 ~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldal 241 (1195)
T KOG4643|consen 162 KSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDAL 241 (1195)
T ss_pred CCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 1 13456799999999999999999999999999999999999999999999999999999999999988777765
Q ss_pred -----------HHHHhhHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHH
Q psy3622 283 -----------KDKLTDLEYYKSRVEELRQDNRA----------------------------------INEIALERDANA 317 (964)
Q Consensus 283 -----------k~kl~~l~~~k~~~~el~e~~~~----------------------------------l~~l~~E~d~~~ 317 (964)
|+++-|.+||+.++++++++|.+ +++|+.+++.++
T Consensus 242 re~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr 321 (1195)
T KOG4643|consen 242 REQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDR 321 (1195)
T ss_pred HHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHH
Confidence 55667889999999999999887 899999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhhcccccccccc-----cccccCCCCCCCCCchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 318 EKLQQLIEENTNLSLLSKSNQCVDNQSVSS-----VDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL 392 (964)
Q Consensus 318 e~~eel~ee~~~Le~~~~~~~~~s~~~~~~-----~~~~~~~~~~~~~~sl~~~~~~~~~~r~~kLe~E~k~L~~~ie~l 392 (964)
.++++|.+||+.|+....+ ....|. +.+. + ....|+..+....+++|+.+++-++.++-..++.+
T Consensus 322 ~kteeL~eEnstLq~q~eq-----L~~~~ellq~~se~~---E--~en~Sl~~e~eqLts~ralkllLEnrrlt~tleel 391 (1195)
T KOG4643|consen 322 HKTEELHEENSTLQVQKEQ-----LDGQMELLQIFSENE---E--LENESLQVENEQLTSDRALKLLLENRRLTGTLEEL 391 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hhhhhhHhhhhhcch---h--hhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999999866433 223332 2221 1 12344555555666789999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 393 HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNR 472 (964)
Q Consensus 393 ~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~ 472 (964)
+..++++...|...++++++.|+.+++.|...+....+..++++...+.+..|+.+++...++..+-...-+... .
T Consensus 392 qsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~----e 467 (1195)
T KOG4643|consen 392 QSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLEN----E 467 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----H
Confidence 999999999999999999999999999999999999999999999999999999999988876644332111111 1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 473 EKQKLEWKNKELELNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHV 544 (964)
Q Consensus 473 e~~~l~~~~eelEr~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~ 544 (964)
+..++....+.+..+-..+...+..++ .+..+...+..+..+......+++.....++.++..+.-++.|+.
T Consensus 468 ~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 468 ELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 111122222222222222222222222 234444455555666666777777777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhh-Hhhhh----hhH-------HHhHHHHhccccch-
Q psy3622 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLV-NEKLK----TTH-------LKNSLDKLGLAMDD- 611 (964)
Q Consensus 545 ~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~-~Ek~k----~~~-------L~~ele~L~~~~e~- 611 (964)
.|-++|..+..+......||..+.++.......++.++.|.+-.. .+++. .|+ ++..++.|+...-.
T Consensus 548 ~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kl 627 (1195)
T KOG4643|consen 548 HLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKL 627 (1195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhh
Confidence 888888888887777788888888877766667777777764211 11111 111 22223333222000
Q ss_pred ------h----------h--hHHHHHHHHhcCHHHHH----------------------------------HHH------
Q psy3622 612 ------Q----------T--DAENILEKILSSPEILN----------------------------------AVK------ 633 (964)
Q Consensus 612 ------~----------~--~le~~l~ki~~~~~~l~----------------------------------~~~------ 633 (964)
. . +.+...+++..++..++ .++
T Consensus 628 l~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lEe~qr~~~~~sn~~~~l~q~~i~~~q~~~ 707 (1195)
T KOG4643|consen 628 LKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILEERQRLGGCKSNAEIDLLQVSIRNSQIQG 707 (1195)
T ss_pred cchhHHHHHHHHhhccccchhHHHHHHHHHhCchhhccccchhhhhhhhhhhhhhhhccccccchHHHHHHHHhcccccc
Confidence 0 0 00111111111111100 000
Q ss_pred ----------------H-Hh----ch---------hh--chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 634 ----------------K-KL----GV---------EH--FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLI 681 (964)
Q Consensus 634 ----------------e-~i----~~---------e~--~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le 681 (964)
+ .+ +. .. -...++..+..+.+....+.+|+-++...+ ..|....+..
T Consensus 708 ele~teapt~lq~~~qelel~sk~~sq~a~e~a~~nst~~~~~lq~~nnklt~d~d~l~~qs~el~~~~-~rq~asrq~a 786 (1195)
T KOG4643|consen 708 ELENTEAPTKLQDELQELELGSKKRSQNADELANMNSTLLVSRLQQLNNKLTRDYDELKKQSMELRQKV-ARQNASRQQA 786 (1195)
T ss_pred hhhcCCCccccchhhHHHHhhHHHhccchhhhcccccchhhhhhhhhcccccccHHHhccccccccchH-HHhhccchhh
Confidence 0 00 00 00 225677788888888888888888887777 5555554444
Q ss_pred HH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 682 LA----------NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQL 751 (964)
Q Consensus 682 ~e----------~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L 751 (964)
.+ .+..+..+..++++.|...+++|+.+..+ |....+.+..+.+...++......++..|..+....
T Consensus 787 les~rn~~e~s~s~~e~~~~~~qlq~rh~s~sse~esl~rD---l~a~~rels~elr~a~~rq~~~~~ri~eL~qq~~qk 863 (1195)
T KOG4643|consen 787 LESNRNIRENSASLSEEKSRREQLQKRHKSCSSECESLRRD---LVATRRELSLELRRALDRQHNKNNRIDELKQQLNQK 863 (1195)
T ss_pred hhhccchhhccchhHHHHhHHHHhhcchhhhcchhhhhhhh---HHHhhhhhhhHHHHHHHhhccccccccHHHHHhhhh
Confidence 33 34456667889999999999999999988 455555666666666666555666777777766555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3622 752 KFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY 831 (964)
Q Consensus 752 ~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L 831 (964)
..+...+. ++ .+.....+...+++..++..... .+..+..+-+.+-..+....+++.-+.-.+...
T Consensus 864 ~~~s~~ls-lr------t~s~~se~vtl~rf~nEsnr~~s-------~h~~ls~qn~eLs~~~~~~sdq~~~l~kd~p~~ 929 (1195)
T KOG4643|consen 864 ISESNKLS-LR------TDSPISELVTLNRFLNESNRNLS-------QHEILSTQNKELSQRALHDSDQYHLLGKDFPDQ 929 (1195)
T ss_pred hccccCcc-cc------cCChHHHHHHHHHHHHHhhccch-------hhhhhhhhhHHHHHHHHhcccchhhhCCCCchH
Confidence 44444333 22 23444556666777777766655 455566666666666665554444333221110
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc
Q psy3622 832 QNKLEDDRRKLMEHV-TNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKS 910 (964)
Q Consensus 832 ~~~LEee~r~L~~q~-~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~~~~kk~~ 910 (964)
.+-.+.....+ ..+..+++.|.. ++++.+|+++...|..+++...+++.....+.+..|.. .| +-++++
T Consensus 930 ----cgal~~~n~kl~~~~~sqyrtlk~--~~~Kk~f~ete~~y~~rva~~~~qk~~~~s~g~~~~e~---s~-vh~~~~ 999 (1195)
T KOG4643|consen 930 ----CGALRRHNEKLPDKIMSQYRTLKP--LEDKKSFRETEQPYVKRVAKALIQKPRATSNGGSTTED---SS-VHSADE 999 (1195)
T ss_pred ----HHhhhhccccCCccchhcccccch--hhccCCcchhccccchhhhhhhcCCCCccccCCcCCCC---Cc-ccCccc
Confidence 00001000011 145567777777 89999999999999999999999999998888877765 21 234455
Q ss_pred hhhhHHHHHHhhchhhhccc----CCCCCcccccCCCCCCCCCccccchhhhhhcc
Q psy3622 911 FGANLVRKVRKAGSELINKS----RKSWHEDSLRKDRGTDSDTSLEDTLEWKVTTR 962 (964)
Q Consensus 911 ~~~~~~~k~~k~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (964)
|.+.+++.++++.+++.+|. +.+|.|+. +| |.++|.+|+++||
T Consensus 1000 rss~l~r~~~las~dl~~k~g~~~~~~~~p~~----~~-----S~~~~~~i~pd~h 1046 (1195)
T KOG4643|consen 1000 RSSPLLRVLHLASIDLFTKTGTNEDVDHLPPT----CS-----SSDDHDVISPDFH 1046 (1195)
T ss_pred ccchHHHHHHHHHHHHHhccCchhhhhhCCcc----cc-----CCCCCCCCCCchh
Confidence 77889999999999999984 56776654 44 7889999999987
No 2
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=100.00 E-value=1.6e-53 Score=520.94 Aligned_cols=288 Identities=42% Similarity=0.598 Sum_probs=117.2
Q ss_pred HhhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCC----CCCc-chHHHhhhHHHHHHHHHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVV----PSLR-NASVRIKNFNTIVKNIKSLYE 87 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~----~~~~-~~~~~~~Nl~~i~~~i~~yy~ 87 (964)
.-|++|||+||+||+ ++.||.+|+||+|||||++||++|||.||+++|. .+++ ||++|++||++||++|..||+
T Consensus 6 ~~l~~~Lv~Wv~tf~-~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~yy~ 84 (713)
T PF05622_consen 6 MELCDSLVTWVQTFN-LSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIKSYYQ 84 (713)
T ss_dssp -HHHHHHHHHHTT----SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCC-CCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999997 5889999999999999999999999999998773 3454 599999999999999999999
Q ss_pred HHhhhhcc--cCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHHHHHHhhhhccccc
Q psy3622 88 EELCQIVL--VLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIV 165 (964)
Q Consensus 88 e~l~~~~~--~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~~~Iq~v~~~~~~~ 165 (964)
++|++.|+ ++||+..||++|+ +.+|++||.|||||||+||+|+.||++||+||.+||++||.+||+||.+..++
T Consensus 85 e~L~~~i~~~~~Pd~~~Iae~~d----~~El~kLL~LlLgcAV~c~~ke~yI~~I~~Ld~~~Q~~im~~Iqev~~~~~~~ 160 (713)
T PF05622_consen 85 EELGQQISEMPLPDLQAIAENSD----PEELKKLLQLLLGCAVQCENKEEYIQRIMELDESTQHAIMEAIQEVTSNQQNV 160 (713)
T ss_dssp TTT-----TTT---HHHHHTT------HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHS-HHHHHHHHHHHHHHHHH----
T ss_pred HHcCCCcCcCCCCCHHHHHhCCC----HHHHHHHHHHHHHHhhcCccHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccc
Confidence 99999885 6899999999998 79999999999999999999999999999999999999999999999876543
Q ss_pred -cCcCCCCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHhc-------------C--------CC--CCChhhhhhHhh
Q psy3622 166 -LSLDNCEGVPTE--VMVSNVKALAKERDRYLQTWRLVEEKR-------------N--------PS--IGNSECQHLAVE 219 (964)
Q Consensus 166 -~~~~~~~~~~~~--~~~~~l~~l~~ErD~~~~~~~~l~~~~-------------~--------~~--~~~~~~~~l~~e 219 (964)
++.+++.++++. .++.++..++.+||.+.++|.++.... + .+ ++.+...++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~d~l~q~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (713)
T PF05622_consen 161 SLSQDSPEDLDSQSRRMYEELSRLVAERDELAQRCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVE 240 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHH
Confidence 333333333332 367789999999999999999884430 0 00 123456788899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Q psy3622 220 LADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK-----------------ALESEIQRY 282 (964)
Q Consensus 220 ~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~-----------------~le~~~~~l 282 (964)
+++++++++.+++++..+...+.+++..++.+..++.+|++++..|...|+.++ +++.++.+|
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~Y 320 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKY 320 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999989999999888888888888888877766665554 489999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q psy3622 283 KDKLTDLEYYKSRVEELRQDNRA 305 (964)
Q Consensus 283 k~kl~~l~~~k~~~~el~e~~~~ 305 (964)
|+|++++.+|+.+++.|++.|..
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~ 343 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAV 343 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876
No 3
>KOG0161|consensus
Probab=99.94 E-value=1.9e-19 Score=229.29 Aligned_cols=517 Identities=21% Similarity=0.262 Sum_probs=373.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccccccccccccccCCCCCCCCCchhHHhhhhHHHHHHHHHHHHHHH
Q psy3622 306 INEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL 385 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~ee~~~Le~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~r~~kLe~E~k~L 385 (964)
+..++.|++.+++++++-.+.+..|...+... .+....|..++. +....+...++.+++++
T Consensus 1324 l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~--~~e~~~~~~k~e-----------------~~~~~~~eelee~kk~l 1384 (1930)
T KOG0161|consen 1324 LRQLEHELDLLREQLEEEQEAKNELERKLSKA--NAELAQWKKKFE-----------------EEVLQRLEELEELKKKL 1384 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999888888776664 446667877762 12344688999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHH----HHHH---HHHHHHHHHH
Q psy3622 386 LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLET----EIRK---INESYQNLEL 458 (964)
Q Consensus 386 ~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~e----e~~~---lq~~~e~~~~ 458 (964)
...++.++.. ......++..|++.+.+|+++++++..++++....++.++++++.+.+ |+.. +...++...+
T Consensus 1385 ~~~lq~~qe~-~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~ 1463 (1930)
T KOG0161|consen 1385 QQRLQELEEQ-IEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQR 1463 (1930)
T ss_pred HHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 888889999999999999999999999999999999999999988544 4332 4444555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy3622 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAESLD 530 (964)
Q Consensus 459 ~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~~le 530 (964)
+.+..+..+..+......+...++++.++++.++.++.++. .+|+|++.++.++.++..++.++++.+++++
T Consensus 1464 e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1464 ELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE 1543 (1930)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777778888888888888888999999999999999998 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhhHhhhhhh-------HHHhHHH
Q psy3622 531 KLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTT-------HLKNSLD 603 (964)
Q Consensus 531 ~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~~Ek~k~~-------~L~~ele 603 (964)
..+....+++.++.+++.++++ ++.+.+.++..... ++++++++++..|.+|..... +|.++|+
T Consensus 1544 ~eE~~~lr~~~~~~~~r~e~er------~l~ek~Ee~E~~rk---~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~ 1614 (1930)
T KOG0161|consen 1544 AEEDKKLRLQLELQQLRSEIER------RLQEKDEEIEELRK---NLQRQLESLQAELEAETRSKSEALRSKKKLEGDIN 1614 (1930)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH------HHHhhhHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchH
Confidence 9999999999999999999999 99999999888876 568899999988876632211 2333444
Q ss_pred HhccccchhhhHHHHHHHHhcCHHHHHHHHHHhchhhchhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 604 KLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA 683 (964)
Q Consensus 604 ~L~~~~e~~~~le~~l~ki~~~~~~l~~~~e~i~~e~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e 683 (964)
.|...++.. ...+..++.++..++..+..|+.+.........++......
T Consensus 1615 elE~~ld~a--------------------------nk~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~---- 1664 (1930)
T KOG0161|consen 1615 ELEIQLDHA--------------------------NKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAE---- 1664 (1930)
T ss_pred HHHHHHHHH--------------------------HHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 443322210 22333444444555555555555555544444444433322
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhH
Q psy3622 684 NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESH----SLS 759 (964)
Q Consensus 684 ~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~----~~~ 759 (964)
...-...+.++.+.+....+.+....+.++.+.-.+.++++.+-.....+......|+.++. .+.
T Consensus 1665 -----------aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ele 1733 (1930)
T KOG0161|consen 1665 -----------AERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELE 1733 (1930)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 12222446777777777777778888888877777777666543332222222222222211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHH
Q psy3622 760 NLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANR--------DDAISALSVQLSKY 831 (964)
Q Consensus 760 ~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~--------~e~~~~L~~~~~~L 831 (964)
....+.+...++.+........+..+++.-++....+....+.|..+.++++..+..+ +.+++.|..++..|
T Consensus 1734 e~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~~a~~~~k~~i~~Learir~L 1813 (1930)
T KOG0161|consen 1734 EEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIREL 1813 (1930)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 2333444444555555555566666667666666667666777777777777666653 46788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhhhHHHHHHh---HHHHHHHHHHHHHHHHHHH
Q psy3622 832 QNKLEDDRRKLMEHVTNLL---AQYHELLTHSLEDKDHYHEEEKN---FSDKLNNLHRQKEKLEEKI 892 (964)
Q Consensus 832 ~~~LEee~r~L~~q~~~L~---~q~~~Ll~~~le~k~~~~ee~~~---~~~k~~~l~~q~e~l~~~l 892 (964)
..+|+.+-+.....+..++ +..+++..+.-++++++..-+.. ++.++..+.+|++..+...
T Consensus 1814 E~~l~~E~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~~~~q~~~dkl~~k~~~~krQleeaE~~~ 1880 (1930)
T KOG0161|consen 1814 ESELEGEQRRKAEAIKGLRKKERRVKELQFQVEEDKKNIERLQDLVDKLQAKIKQYKRQLEEAEEEA 1880 (1930)
T ss_pred HHHHhHhhhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999998777777776666 56788888998888887654433 5666777777777766655
No 4
>KOG4643|consensus
Probab=99.94 E-value=1e-20 Score=219.58 Aligned_cols=413 Identities=25% Similarity=0.332 Sum_probs=298.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Q psy3622 503 EYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ------- 575 (964)
Q Consensus 503 ~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~------- 575 (964)
.|+-.+..++.-+..|+.+++|+-..+..+...|.-++.++..|+.+....-....+....-.+.+.+..+..
T Consensus 174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yk 253 (1195)
T KOG4643|consen 174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYK 253 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccc
Confidence 4444445555555666666666666666666666666666666666666655555555544444444443331
Q ss_pred -------hhHhhHHHHHhH---hhHhhhhhhHHHhHHHHhccccchhhhHHHHHHHHhcCHHHHHHHHHHhchhhchhHh
Q psy3622 576 -------VDKNTLSVLQND---LVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDES 645 (964)
Q Consensus 576 -------~~~~tl~~Lq~~---l~~Ek~k~~~L~~ele~L~~~~e~~~~le~~l~ki~~~~~~l~~~~e~i~~e~~~~~L 645 (964)
..+..+..|.++ |..+| - =|..+|..+...-+. .++++.+ +..+..+ -.+..+++..
T Consensus 254 erlmDs~fykdRveelkedN~vLleek-e--MLeeQLq~lrarse~-~tlesei---iqlkqkl------~dm~~erdtd 320 (1195)
T KOG4643|consen 254 ERLMDSDFYKDRVEELKEDNRVLLEEK-E--MLEEQLQKLRARSEG-ATLESEI---IQLKQKL------DDMRSERDTD 320 (1195)
T ss_pred hhhhhhHHHHHHHHHHHhhhHHHHHHH-H--HHHHHHHHHHhcccc-CChHHHH---HHHHHHH------HHHHHhhhhH
Confidence 122333333333 11111 0 123334444333222 2233322 1111111 1224577888
Q ss_pred hHHhhhhHHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 646 SLNNAKLEVDLKTSQSQISSLTSQHTALQL-------ANSQLILA--------NHNELLQDQMTMTKLHEQLNMEYESVV 710 (964)
Q Consensus 646 q~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~-------~~~~le~e--------~~~~l~~~~~~L~~l~e~l~~E~E~l~ 710 (964)
+.+++.|.+++.+|+.+...|..+.+-++. .+..+..+ .++.++.++.-+..+++...++|++++
T Consensus 321 r~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt~tleelqsss~Ee~~ 400 (1195)
T KOG4643|consen 321 RHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLTGTLEELQSSSYEELI 400 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 888899999999999988888776666665 22222222 677888899999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 711 KEIKVLKSTLRDVKNENKTVKEQYSQLKVSY-------ESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLK 783 (964)
Q Consensus 711 ~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~-------~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~ 783 (964)
..|-+++..+++|..+++.|+++|.++..+. ..|..|++.|..++.+.+.............+.+....+.+.
T Consensus 401 SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~ 480 (1195)
T KOG4643|consen 401 SKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLE 480 (1195)
T ss_pred HHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998664444 445567777888777777777666677777766666666777
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH--
Q psy3622 784 ADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK----------LEDDRRKLMEHVTNLLA-- 851 (964)
Q Consensus 784 ~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~----------LEee~r~L~~q~~~L~~-- 851 (964)
.++..++.+++.+...+..-...++.+.+..+.+++++....++++.+.++ ++++|++|..+|+.|..
T Consensus 481 ~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~ 560 (1195)
T KOG4643|consen 481 AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTS 560 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 777777766667766677777777777788888889999999999988887 89999999999999998
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc--hhhhHHH--HHHhhchhhh
Q psy3622 852 QYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKS--FGANLVR--KVRKAGSELI 927 (964)
Q Consensus 852 q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~~~~kk~~--~~~~~~~--k~~k~~~~~~ 927 (964)
||..++++++++.+.||.+++.|.++++.+.++++.++.++|++|-.|++.| ||++. ++.++++ ++||.+.|++
T Consensus 561 qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~--~kr~ie~Lr~~~~kll~~Kkdr~ree 638 (1195)
T KOG4643|consen 561 QNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIP--LKRDIEWLRRKESKLLKEKKDRNREE 638 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCc--hhhhHHHHHHHHHhhcchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988 78777 6777777 9999999999
Q ss_pred ccc
Q psy3622 928 NKS 930 (964)
Q Consensus 928 ~~~ 930 (964)
.|+
T Consensus 639 ~ke 641 (1195)
T KOG4643|consen 639 TKE 641 (1195)
T ss_pred Hhh
Confidence 995
No 5
>KOG0161|consensus
Probab=99.93 E-value=1.1e-17 Score=213.44 Aligned_cols=496 Identities=21% Similarity=0.254 Sum_probs=368.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 400 SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEW 479 (964)
Q Consensus 400 ~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~ 479 (964)
....-..+++++..++.++.++..++........+.++.++.++..+..++..+++.++...++-.....+..++..+.+
T Consensus 1201 l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~ 1280 (1930)
T KOG0161|consen 1201 LQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSR 1280 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 33445689999999999999999999999999999999999999999999999999988888888888888888888877
Q ss_pred HHHHHH-------HhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 480 KNKELE-------LNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHV 544 (964)
Q Consensus 480 ~~eelE-------r~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~ 544 (964)
.+++.+ +.+..+..+++.++ ..+.+....++++.|+..+++++++....+..+..+++++..++.
T Consensus 1281 ~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~ 1360 (1930)
T KOG0161|consen 1281 QLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELA 1360 (1930)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765554 55666666666665 458899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHh-hHhhhhhhHHHhHHHHhccccchhhhHHHHHH---
Q psy3622 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL-VNEKLKTTHLKNSLDKLGLAMDDQTDAENILE--- 620 (964)
Q Consensus 545 ~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l-~~Ek~k~~~L~~ele~L~~~~e~~~~le~~l~--- 620 (964)
+|++.++. .....+.+++...+.+...+......++.+...- ..++.+ .+|.+++.++..+.+........+.
T Consensus 1361 ~~~~k~e~--~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k-~~l~~el~d~~~d~~~~~~~~~~le~k~ 1437 (1930)
T KOG0161|consen 1361 QWKKKFEE--EVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAK-NRLQQELEDLQLDLERSRAAVAALEKKQ 1437 (1930)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 5555788899988888887777777777777653 355666 5788888888888776433233222
Q ss_pred -H---Hh-cC-------HHHH-HHHHH-------Hh-------chhhchhHhhHHhhhhHHHHhhhHHHHHHHHH-----
Q psy3622 621 -K---IL-SS-------PEIL-NAVKK-------KL-------GVEHFNDESSLNNAKLEVDLKTSQSQISSLTS----- 668 (964)
Q Consensus 621 -k---i~-~~-------~~~l-~~~~e-------~i-------~~e~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~----- 668 (964)
. ++ .. ...+ ...++ ++ ..-...+++...++.++.++..|..++..++.
T Consensus 1438 k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~el 1517 (1930)
T KOG0161|consen 1438 KRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHEL 1517 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11 11 1111 11111 11 11236778888888888888888888887654
Q ss_pred ---------HHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhhhHH
Q psy3622 669 ---------QHTALQLANSQLILA---NHNELLQDQMTMTKLHEQLNMEYESVVKEIKV------------LKSTLRDVK 724 (964)
Q Consensus 669 ---------q~~~Lq~~~~~le~e---~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~------------Lk~~~~~Le 724 (964)
+..++|.+...++.+ .....++....+ .+++++.++-+.+.+. +.+....|+
T Consensus 1518 ek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~----~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le 1593 (1930)
T KOG0161|consen 1518 EKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLEL----QQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELE 1593 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455555544444 233333343344 3444444444333322 444455666
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q psy3622 725 NENKTVKEQYS---QLKVSYESLQAEMEQ----LKFESHSLSNLRAEHSKLKDDFRILFTANEKLKAD-------FRALQ 790 (964)
Q Consensus 725 ~e~r~l~~~~~---~Le~~~~~L~~e~~~----L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~-------~~~Lq 790 (964)
.+.+.-.+.++ .+++.+++|+...+. ....++++..++...+.++.+++..+...+.+... +..++
T Consensus 1594 ~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~ 1673 (1930)
T KOG0161|consen 1594 AETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQ 1673 (1930)
T ss_pred HHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555444 588889998877663 23445566667777777888887777777777744 44666
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh---hhhhhh
Q psy3622 791 EEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQYHELLT---HSLEDK 864 (964)
Q Consensus 791 ~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~~~Ll~---~~le~k 864 (964)
++...|+..+..+.+....++.++.++.++++.+....+.+... |+.+...|.+.++.-..+++.+.+ ++..+.
T Consensus 1674 ~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a 1753 (1930)
T KOG0161|consen 1674 AELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADA 1753 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777777777888888899999999999888665554444 999999999999999988887766 888999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy3622 865 DHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSC 902 (964)
Q Consensus 865 ~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a 902 (964)
.++.++.+...+...++.+.+..|+..+.|...+++++
T Consensus 1754 ~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~ 1791 (1930)
T KOG0161|consen 1754 AKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEA 1791 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776555
No 6
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.86 E-value=1.5e-23 Score=259.15 Aligned_cols=506 Identities=20% Similarity=0.260 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccccccccccccccCCCCCCCCCchhHHhhhhHHHHHHHHHHHHHHH
Q psy3622 306 INEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL 385 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~ee~~~Le~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~r~~kLe~E~k~L 385 (964)
+..+..+++.+++++++..+.+..++..+... +.....|+.+|+. ....+...|+..+++|
T Consensus 266 l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~--~~El~~~k~K~e~-----------------e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 266 LRQLEHELEQLREQLEEEEEAKSELERQLSKL--NAELEQWKKKYEE-----------------EAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH--hhHHHHHHHHHHH-----------------HhhhhHHHHHHHHHHH
Confidence 88888999999999999998888888776654 4467778888731 1123567788889999
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHH-------HH
Q psy3622 386 LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNL-------EL 458 (964)
Q Consensus 386 ~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~-------~~ 458 (964)
...|.++... +.+...++..|++.+.+|..+++++..+++.....+..++++++++......+...++.+ .+
T Consensus 327 ~~~L~el~e~-le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~ 405 (859)
T PF01576_consen 327 ERKLQELQEQ-LEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQR 405 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 888888999999999999999999999999999999999999999877766665554433 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH
Q psy3622 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAESLD 530 (964)
Q Consensus 459 ~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~~le 530 (964)
+...+...+..|...+..+...++.+++.++.|+.++.++. .+|+|++.++.||.++..++.++++.+++++
T Consensus 406 e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~ 485 (859)
T PF01576_consen 406 EARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALE 485 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667777777777777777889999999999999997 6799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhhHhhhhh-------hHHHhHHH
Q psy3622 531 KLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKT-------THLKNSLD 603 (964)
Q Consensus 531 ~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~~Ek~k~-------~~L~~ele 603 (964)
..+....|++.++++++.++++ ++.+.+.++..+.. ..++.|.+|+..|..|.-.. .+|.++|+
T Consensus 486 ~~E~~~lRl~~el~~~r~e~er------~l~eKeeE~E~~Rr---~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~ 556 (859)
T PF01576_consen 486 AEEQKKLRLQVELQQLRQEIER------ELQEKEEEFEETRR---NHQRQLESLEAELEEERKERAEALREKKKLESDLN 556 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHhhhhHHHHHHH---hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999998775 56889999999887542211 36778888
Q ss_pred Hhccccchh----hhHHHHHHHHhc----CHHHH---HHHHH------------H--h------------chhhchhHhh
Q psy3622 604 KLGLAMDDQ----TDAENILEKILS----SPEIL---NAVKK------------K--L------------GVEHFNDESS 646 (964)
Q Consensus 604 ~L~~~~e~~----~~le~~l~ki~~----~~~~l---~~~~e------------~--i------------~~e~~~~~Lq 646 (964)
.|...++.. ..+...++++.. +...+ ...++ + + ..+.....++
T Consensus 557 eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE 636 (859)
T PF01576_consen 557 ELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAE 636 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777762 222223332111 00000 00000 0 0 1123455566
Q ss_pred HHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 647 LNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA----------NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVL 716 (964)
Q Consensus 647 ~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e----------~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~L 716 (964)
.....+...+..|..+..++..+...|......++.+ ..+...+....+..+...|..+.+.. ..+
T Consensus 637 ~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~----~~l 712 (859)
T PF01576_consen 637 SELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEELRQEQDHN----QHL 712 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH----HHH
Confidence 6667777777777777777777766666666666555 22223333334444444455544433 556
Q ss_pred HHHhhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 717 KSTLRDVKNENKTVKEQYS---------------QLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEK 781 (964)
Q Consensus 717 k~~~~~Le~e~r~l~~~~~---------------~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~ 781 (964)
.....+|+..+++|..++. .|+.++.+|+.+ |+.+.+....+...++++...++++..+.++
T Consensus 713 e~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~---Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee 789 (859)
T PF01576_consen 713 EKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEE---LESEQRRRAEAQKQLRKLERRVKELQFQVEE 789 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6666777777777766654 356666666666 6778888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy3622 782 LKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLED---DRRKLMEHVTNLLAQYH 854 (964)
Q Consensus 782 l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEe---e~r~L~~q~~~L~~q~~ 854 (964)
-+.....++...+.++..++.+++++.+++.+.+... ..+.++...|++ .+..+.+.+..|+..++
T Consensus 790 ~~k~~~~~~d~~~kl~~k~k~~krq~eeaEe~~~~~~-------~k~Rk~q~elee~~e~~~~~e~~l~~lr~~~r 858 (859)
T PF01576_consen 790 ERKNAERLQDLVDKLQLKLKQLKRQLEEAEEEASRNL-------AKYRKLQRELEEAEERAEAAERELNKLRAKSR 858 (859)
T ss_dssp ------------------------------------------------SSSSHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999888544 556666666544 57788888888887553
No 7
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.72 E-value=5.1e-19 Score=219.15 Aligned_cols=513 Identities=20% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3622 383 KRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462 (964)
Q Consensus 383 k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~ 462 (964)
++....+.+|..+ +.....-...+++++..+..++.++...++........+++.++.++.....++..+++.++.+.+
T Consensus 127 kkh~~~~~eL~eq-le~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~e 205 (859)
T PF01576_consen 127 KKHQDAVAELNEQ-LEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNE 205 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544 444433468899999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 463 RNDELDNMNREKQKLEWKNKELE-------LNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAE 527 (964)
Q Consensus 463 le~~~~~l~~e~~~l~~~~eelE-------r~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~ 527 (964)
+......|..++..|...+++++ +.+.+|..+++++. ....|.+.++.++.++..+++++++...
T Consensus 206 l~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e 285 (859)
T PF01576_consen 206 LTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEE 285 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888876555 55666666776666 4578889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhh-HhhhhhhHHHhHHHHhc
Q psy3622 528 SLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLV-NEKLKTTHLKNSLDKLG 606 (964)
Q Consensus 528 ~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~-~Ek~k~~~L~~ele~L~ 606 (964)
+...+...+.+++.++..|++.++. ....++.++|...+.+...+......++.++.... .++.+ .+|.++++++.
T Consensus 286 ~k~~l~~qlsk~~~El~~~k~K~e~--e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k-~rL~~EleDl~ 362 (859)
T PF01576_consen 286 AKSELERQLSKLNAELEQWKKKYEE--EAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTK-KRLQGELEDLT 362 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999 66667788888888888877777888888877654 34555 57999999999
Q ss_pred cccchhhhHHHHHHH----Hhc----CHHH-------H-HHHHH-------Hh-------chhhchhHhhHHhhhhHHHH
Q psy3622 607 LAMDDQTDAENILEK----ILS----SPEI-------L-NAVKK-------KL-------GVEHFNDESSLNNAKLEVDL 656 (964)
Q Consensus 607 ~~~e~~~~le~~l~k----i~~----~~~~-------l-~~~~e-------~i-------~~e~~~~~Lq~~~~~Lq~e~ 656 (964)
.+++........+.+ +-. +... + ...++ ++ .....+..+...+..|+.++
T Consensus 363 ~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El 442 (859)
T PF01576_consen 363 SELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDEL 442 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888874332222322 211 1111 1 01111 11 11246777888888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy3622 657 KTSQSQISSLTSQHTALQLANSQLILA-----------------NHNELLQDQMTMTKLHEQLNMEYESVVKEIKV---- 715 (964)
Q Consensus 657 ~~L~sq~~sl~~q~~~Lq~~~~~le~e-----------------~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~---- 715 (964)
..|.++++..+.....|......++.+ ...+.++....| ++++++|+.-+.+.+.
T Consensus 443 ~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el----~~~r~e~er~l~eKeeE~E~ 518 (859)
T PF01576_consen 443 EDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVEL----QQLRQEIERELQEKEEEFEE 518 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHH
Confidence 888888777654444444443333333 333445555555 4455555554444332
Q ss_pred --------HHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 716 --------LKSTLRDVKNENKTVKEQY---SQLKVSYESLQAEMEQ----LKFESHSLSNLRAEHSKLKDDFRILFTANE 780 (964)
Q Consensus 716 --------Lk~~~~~Le~e~r~l~~~~---~~Le~~~~~L~~e~~~----L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e 780 (964)
+......|+.+.+.....+ ..|++.+++|+...+. .....+.+..+...++.++..+++....++
T Consensus 519 ~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~ 598 (859)
T PF01576_consen 519 TRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRARE 598 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4444445555544433322 2578888888765442 233344455566667777777776666666
Q ss_pred HHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy3622 781 KLKADFR-------ALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLL 850 (964)
Q Consensus 781 ~l~~~~~-------~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~ 850 (964)
.+...+. .|+++...++..+..+.+....++.++..+.+++..+....+.+... |+.++..|..++....
T Consensus 599 ~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~ 678 (859)
T PF01576_consen 599 ELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQ 678 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665544 56677777777777777788888899998888888888777666655 8888888888888888
Q ss_pred HHHHHHHh---hhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy3622 851 AQYHELLT---HSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCS 903 (964)
Q Consensus 851 ~q~~~Ll~---~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~ 903 (964)
.....+.+ +++.+..++..++....+...+++..+..|+.++.+....++++.
T Consensus 679 ~~~~~~~ek~kka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E 734 (859)
T PF01576_consen 679 SEAEAAEEKAKKAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAE 734 (859)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666 788888999999999999999999999999999999888866663
No 8
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.63 E-value=1.7e-07 Score=122.08 Aligned_cols=74 Identities=27% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCChhhhhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 208 IGNSECQHLAVELAD-LKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKL 286 (964)
Q Consensus 208 ~~~~~~~~l~~e~ad-~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~lk~kl 286 (964)
.+|.+++.++.|+|| ++++-|+ ++....|..+..++.++.+.+.+++.+...|..++..+.+|. .++..+
T Consensus 152 ~kp~err~iiEEaaGv~~y~~r~-----~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~----~l~~e~ 222 (1163)
T COG1196 152 AKPEERRKLIEEAAGVSKYKERK-----EEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQ----ELKAEL 222 (1163)
T ss_pred CCHHHHHHHHHHHhchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 358999999999999 8999998 899999999999999999999999999999999999999888 777777
Q ss_pred hhHH
Q psy3622 287 TDLE 290 (964)
Q Consensus 287 ~~l~ 290 (964)
+.++
T Consensus 223 ~~~~ 226 (1163)
T COG1196 223 RELE 226 (1163)
T ss_pred HHHH
Confidence 7764
No 9
>KOG4674|consensus
Probab=99.58 E-value=4.2e-07 Score=115.98 Aligned_cols=106 Identities=22% Similarity=0.364 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhhhhhHhhhhh-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy3622 182 NVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELAD-LKSKLRKQRLELE----EKSEHLTESRDELEHHKALIN 256 (964)
Q Consensus 182 ~l~~l~~ErD~~~~~~~~l~~~~~~~~~~~~~~~l~~e~ad-~k~klr~~~~ele----ek~~~L~~~~~el~~~~~~~~ 256 (964)
.|..|+.+||.|.....++....+ ..|.....-..+.+. ....+|.+..+++ ++.+.+..+..++..+..++.
T Consensus 594 ~i~sLl~erd~y~e~l~~~e~~~~--~k~nss~~~~t~~~~~~e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~ 671 (1822)
T KOG4674|consen 594 RIESLLTERDMYKELLAELEDSHQ--LKPNSSALDQTEAPRAKEKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVT 671 (1822)
T ss_pred HHHHHHHHHHHHHHhhhccccccc--CCCCchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888766665544321 111111111122222 3445666655553 667777777788888888888
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhH
Q psy3622 257 RMKAEMLELRAEARSGK----ALESEIQRYKDKLTDL 289 (964)
Q Consensus 257 ~l~~e~~~l~~~a~~~~----~le~~~~~lk~kl~~l 289 (964)
.++.++..+.....-|. -++..+..||..+..+
T Consensus 672 ~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL 708 (1822)
T KOG4674|consen 672 AIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETL 708 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766554333 2666666666666555
No 10
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.57 E-value=9.3e-07 Score=116.78 Aligned_cols=62 Identities=19% Similarity=0.287 Sum_probs=36.8
Q ss_pred CChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 209 GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKA 274 (964)
Q Consensus 209 ~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~ 274 (964)
+|.+++.++.+++|+. .+...+.+....|..+.+.+.++.+.+..|+.+...+......+.+
T Consensus 151 ~~~~r~~~~~~~~g~~----~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~ 212 (1164)
T TIGR02169 151 SPVERRKIIDEIAGVA----EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212 (1164)
T ss_pred CHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888822 2233335556666666666666666666666655555444444433
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.52 E-value=2.2e-06 Score=113.39 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=37.1
Q ss_pred CChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 209 GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALE 276 (964)
Q Consensus 209 ~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le 276 (964)
+|.++..+..+++++. .+. ..+..+..+|.++.+.+.++..++..|..++.+++++.
T Consensus 153 ~~~~~~~~~~~~~~~~----~~~-------~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~ 209 (1179)
T TIGR02168 153 KPEERRAIFEEAAGIS----KYK-------ERRKETERKLERTRENLDRLEDILNELERQLKSLERQA 209 (1179)
T ss_pred CHHHHHHHHHHHccHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667766522 111 13345666777777888888888888888888887765
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=2.6e-06 Score=112.55 Aligned_cols=197 Identities=8% Similarity=0.082 Sum_probs=115.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHhh
Q psy3622 506 TKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH---VSLTKQIEDQENELKKYNDLKREMDELDSKYQ--VDKNT 580 (964)
Q Consensus 506 ~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~---~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~--~~~~t 580 (964)
..+..++.++..+...+......++.....+..+..++ ..|.+.+..+.++..++..++..+..+...+. +...+
T Consensus 744 ~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s 823 (1311)
T TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823 (1311)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 44455566666666666666666667777777766666 55788888889999999999999999887764 33468
Q ss_pred HHHHHhHhhHhhhhhhHHHhHHHHhccccch----hhhHHHHHHHHhcCHH----HH---HHHHHHh-chhhchhHhhHH
Q psy3622 581 LSVLQNDLVNEKLKTTHLKNSLDKLGLAMDD----QTDAENILEKILSSPE----IL---NAVKKKL-GVEHFNDESSLN 648 (964)
Q Consensus 581 l~~Lq~~l~~Ek~k~~~L~~ele~L~~~~e~----~~~le~~l~ki~~~~~----~l---~~~~e~i-~~e~~~~~Lq~~ 648 (964)
+++++.++.........++..++.+....+. +..|...+..+..... .+ ..+.+.+ .+...+..+...
T Consensus 824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887653322222255556655554444 2333222222111111 11 1111111 223456666666
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q psy3622 649 NAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA---NHNELLQDQMTMTKLHEQL 702 (964)
Q Consensus 649 ~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e---~~~~l~~~~~~L~~l~e~l 702 (964)
+..+..++..|.+.+..+...+..+.......+.+ .+..+......+..++..+
T Consensus 904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 904 IKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777776666665554444 4445555555555555443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=99.44 E-value=2.2e-06 Score=109.73 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHH
Q psy3622 381 ENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454 (964)
Q Consensus 381 E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e 454 (964)
..+.+...+..++.. ..+...++..++.....+..+++.+...+.........++.+...+......++..+.
T Consensus 259 ~~~~l~~~i~~~e~~-~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~ 331 (880)
T PRK02224 259 EIEDLRETIAETERE-REELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331 (880)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333 3333344666666666666667777776666655555555555555555555554443
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.35 E-value=2.3e-05 Score=103.76 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=11.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 872 KNFSDKLNNLHRQKEKLEEKIMEHY 896 (964)
Q Consensus 872 ~~~~~k~~~l~~q~e~l~~~l~e~y 896 (964)
.++...+..|...+..+...+...|
T Consensus 1003 ~dL~~~~~~L~~~i~~i~~~~~~~f 1027 (1179)
T TIGR02168 1003 DFLTAQKEDLTEAKETLEEAIEEID 1027 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555444444444444444
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=99.28 E-value=3.4e-05 Score=98.85 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3622 734 YSQLKVSYESLQAEME 749 (964)
Q Consensus 734 ~~~Le~~~~~L~~e~~ 749 (964)
+..+..+++.+..++.
T Consensus 574 ~~~~~~~~~~l~~~~~ 589 (880)
T PRK02224 574 VAELNSKLAELKERIE 589 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=5.4e-05 Score=100.25 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy3622 374 KALRLELENKRLLSTIESLHEN 395 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~ 395 (964)
.+..++.+...+...++.....
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~ 493 (1311)
T TIGR00606 472 RILELDQELRKAERELSKAEKN 493 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666555443
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=99.16 E-value=0.00012 Score=93.81 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHH
Q psy3622 112 GLENMKLLLLLLLG 125 (964)
Q Consensus 112 ~~~el~~ll~l~lg 125 (964)
|---+..-+.++|+
T Consensus 35 GKStil~ai~~~l~ 48 (880)
T PRK03918 35 GKSSILEAILVGLY 48 (880)
T ss_pred CHHHHHHHHHHHhc
Confidence 44444444444443
No 18
>KOG4674|consensus
Probab=99.16 E-value=0.00014 Score=93.75 Aligned_cols=198 Identities=22% Similarity=0.342 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH
Q psy3622 695 MTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYS----QLKVSYESLQAEMEQLKFESHS-LSNLRAEHSKLK 769 (964)
Q Consensus 695 L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~----~Le~~~~~L~~e~~~L~~e~~~-~~~l~~e~~~l~ 769 (964)
+.....+|..+++.+..+...|...+.++...+..+..-+. .++.++..|..++..+...... ...++.-...+.
T Consensus 757 l~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~ 836 (1822)
T KOG4674|consen 757 LKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLE 836 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334556666666666666666666666655555544222 4556666666555544433221 122223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHH----
Q psy3622 770 DDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ--LSKYQNKLEDDRRKLM---- 843 (964)
Q Consensus 770 ~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~--~~~L~~~LEee~r~L~---- 843 (964)
..+..++...+.+...+..+......++..+..+...+++|...+...+.+...++.. ... ...++...+...
T Consensus 837 ~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d-~~~~~~~Lr~~~eq~~ 915 (1822)
T KOG4674|consen 837 KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNED-ATILEDTLRKELEEIT 915 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhh-hhhhhHHHHHHHHHHH
Confidence 4555556666666666666666666666666666666666666655544444444321 000 000222233333
Q ss_pred ----------HHHHHHHHHHHHHHhhhhhhhh-hHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy3622 844 ----------EHVTNLLAQYHELLTHSLEDKD-HYHEEEKNFSDKLNNLHRQKEKLEEKIME 894 (964)
Q Consensus 844 ----------~q~~~L~~q~~~Ll~~~le~k~-~~~ee~~~~~~k~~~l~~q~e~l~~~l~e 894 (964)
+++..+...+..+ +++++.-. .|++--..+..++..+...+-.++..+.+
T Consensus 916 ~l~~~L~~a~s~i~~yqe~~~s~-eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~ 976 (1822)
T KOG4674|consen 916 DLKEELTDALSQIREYQEEYSSL-EQSLESVKSELDETRLELEAKIESLHKKITSLEEELSE 976 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222 23333333 33333445677777777777777766555
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.13 E-value=9.7e-05 Score=90.06 Aligned_cols=85 Identities=19% Similarity=0.228 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 472 REKQKLEWKNKELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550 (964)
Q Consensus 472 ~e~~~l~~~~eelEr~~~~l~~el~~l~-~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~ 550 (964)
.++..++..++++.......+.-++.++ ++...+.....|-.++..++--++++...+......+..++.+...+..++
T Consensus 301 ~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei 380 (775)
T PF10174_consen 301 SELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEI 380 (775)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455555554 455566666677777777777777777777777777777777777766666
Q ss_pred HHHHHH
Q psy3622 551 EDQENE 556 (964)
Q Consensus 551 e~~~~~ 556 (964)
+.+...
T Consensus 381 ~~l~d~ 386 (775)
T PF10174_consen 381 EDLRDM 386 (775)
T ss_pred HHHHHH
Confidence 654443
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.08 E-value=0.00016 Score=88.14 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3622 306 INEIALERDANAEKLQQLIE 325 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~e 325 (964)
+..+..|.+.++..++....
T Consensus 5 l~~~q~E~e~L~~ele~~~~ 24 (775)
T PF10174_consen 5 LERLQRENERLRRELERKQS 24 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666655443
No 21
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.06 E-value=0.00044 Score=91.55 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 240 HLTESRDELEHHKALINRMKAEMLELRAEARSGKA 274 (964)
Q Consensus 240 ~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~ 274 (964)
.+..+...+.++.+.+.+++.....|..++..+.+
T Consensus 171 ~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~ 205 (1164)
T TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRR 205 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.98 E-value=0.00073 Score=88.57 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3622 274 ALESEIQRYKDKLTDLEYYKSRVEELRQD 302 (964)
Q Consensus 274 ~le~~~~~lk~kl~~l~~~k~~~~el~e~ 302 (964)
.++..+..|+...+.+..|+..-.+++..
T Consensus 197 el~~~l~~L~~q~~~a~~y~~l~~e~~~~ 225 (1163)
T COG1196 197 ELEKQLEKLERQAEKAERYQELKAELREL 225 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766665554443
No 23
>KOG0933|consensus
Probab=98.94 E-value=0.00047 Score=82.95 Aligned_cols=182 Identities=18% Similarity=0.225 Sum_probs=82.1
Q ss_pred chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 641 FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTM-TKLHEQLNMEYESVVKEIKVLKST 719 (964)
Q Consensus 641 ~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e~~~~l~~~~~~L-~~l~e~l~~E~E~l~~e~e~Lk~~ 719 (964)
...+.+.++...+.++..+..++.++..+......-..+++-..++.-+ ...++ +.-+..+..++..+..+++.....
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l-~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~ 756 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELAL-LEKRLEQNEFHKLLDDLKELLEEVEESEQQ 756 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHhhHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777777766655444433333333332111111 00001 011123444555555555555555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy3622 720 LRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHME 799 (964)
Q Consensus 720 ~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e 799 (964)
++......+.-.+.+..++....+-...++ +.+..+..+++.+..+++.-....+.-..+|..++.+++.+..+
T Consensus 757 Ike~~~~~k~~~~~i~~lE~~~~d~~~~re------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e 830 (1174)
T KOG0933|consen 757 IKEKERALKKCEDKISTLEKKMKDAKANRE------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKE 830 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455455444444333332 12233444444444444444444444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy3622 800 KRKLTLSLTELEGELANRDDAISALSVQLS 829 (964)
Q Consensus 800 ~~~lk~~l~~le~El~~~~e~~~~L~~~~~ 829 (964)
+..++.++..+......++..+..+.+.+.
T Consensus 831 ~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 831 ISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555444444444444444433
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=98.62 E-value=0.0071 Score=77.74 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=4.1
Q ss_pred hhhhhhHhhh
Q psy3622 211 SECQHLAVEL 220 (964)
Q Consensus 211 ~~~~~l~~e~ 220 (964)
+++..++..+
T Consensus 145 ~~r~~~~~~~ 154 (880)
T PRK03918 145 ESREKVVRQI 154 (880)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.31 E-value=0.017 Score=67.36 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.1
Q ss_pred HhHHHHHHHHH
Q psy3622 509 ANCEKEIKKCK 519 (964)
Q Consensus 509 ~~LE~E~~~l~ 519 (964)
..|+.++..+.
T Consensus 223 ~~LEedi~~l~ 233 (546)
T PF07888_consen 223 RELEEDIKTLT 233 (546)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 26
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.30 E-value=0.048 Score=72.14 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=45.0
Q ss_pred CChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 209 GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQ 280 (964)
Q Consensus 209 ~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~ 280 (964)
.+.+++.++.|+++++.+. .+....|......+.++.+.+..+......|..++.++.++.....
T Consensus 277 ~~eERR~liEEAag~r~rk-------~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 277 HANERRVHLEEALELRREL-------YTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999998777443 4555666666666666666677777777777777777776653333
No 27
>KOG0976|consensus
Probab=98.26 E-value=0.023 Score=66.92 Aligned_cols=60 Identities=18% Similarity=0.350 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 832 QNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKI 892 (964)
Q Consensus 832 ~~~LEee~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l 892 (964)
..+-+..++..-+|+..+.-..+.+..+ ++.+.....+...+.....+-...++-+.+-|
T Consensus 447 ke~aegsrrraIeQcnemv~rir~l~~s-le~qrKVeqe~emlKaen~rqakkiefmkEei 506 (1265)
T KOG0976|consen 447 KEHAEGSRRRAIEQCNEMVDRIRALMDS-LEKQRKVEQEYEMLKAENERQAKKIEFMKEEI 506 (1265)
T ss_pred HHhhhhhHhhHHHHHHHHHHHHHHHhhC-hhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3336677888889998888888877653 34344444443333333333333333444444
No 28
>KOG0976|consensus
Probab=98.10 E-value=0.048 Score=64.44 Aligned_cols=60 Identities=28% Similarity=0.259 Sum_probs=40.1
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 364 SEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ 431 (964)
Q Consensus 364 ~~~~~~~~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~ 431 (964)
+-+.+.-.+.-..-+|...+.++..|-.|+. +|..+|.+++.|+.-+..+++++......
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn--------~c~~lE~ekq~lQ~ti~~~q~d~ke~ete 142 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQN--------KCLRLEMEKQKLQDTIQGAQDDKKENEIE 142 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667667777777766665 48888888888888888777776554433
No 29
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.05 E-value=0.13 Score=67.83 Aligned_cols=75 Identities=24% Similarity=0.323 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3622 740 SYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGEL 814 (964)
Q Consensus 740 ~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El 814 (964)
.+..+..++..|..+++.+..-+.....++..+.......+.+......+..+...+...+..++..++....++
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 846 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEV 846 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555566655555554444444455555555555444444444444444433
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.03 E-value=0.043 Score=61.43 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHhHHHHHHhHhhHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 484 LELNMEINKQLSNNTEEI--NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 484 lEr~~~~l~~el~~l~~~--~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
||..|..|..++..+... .........++.++..++.+|.........+...+..+..++..++..++.
T Consensus 23 LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~ 93 (312)
T PF00038_consen 23 LEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE 93 (312)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 444444444444433311 222333444555555555555544444444444444444444444444443
No 31
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.03 E-value=0.15 Score=67.49 Aligned_cols=43 Identities=19% Similarity=0.413 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 510 NCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 510 ~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
.|+.++..+..++.......++++..+...+..+..++..+..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~ 646 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQ 646 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555544
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.99 E-value=0.07 Score=62.44 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy3622 406 ELEKEKKKLSLQVEDLEETKRRLSAQCT 433 (964)
Q Consensus 406 ~LEkek~~L~~eie~l~~~le~~~~~~~ 433 (964)
.|++++..|..++..+...+........
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e 188 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEME 188 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555444444444433
No 33
>KOG0971|consensus
Probab=97.99 E-value=0.087 Score=63.32 Aligned_cols=174 Identities=22% Similarity=0.291 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHH----H
Q psy3622 235 EEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEI----QRYKDKLTDLEYYKSRVEELRQDNRA----I 306 (964)
Q Consensus 235 eek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~----~~lk~kl~~l~~~k~~~~el~e~~~~----l 306 (964)
..|..+|..++.+++.+..--.++-..-..|...-..++.--.+. +.|+.-+.|. ..-++...-+... .
T Consensus 251 k~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~---ad~iEmaTldKEmAEERa 327 (1243)
T KOG0971|consen 251 KAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADT---ADAIEMATLDKEMAEERA 327 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHH
Confidence 356667777777776654433333333333333332222211122 2233333332 2222222222222 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhcccccccccccccccCCCCCCCCCchhHHhhhhHHHHHHHHHHHHHHHH
Q psy3622 307 NEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLL 386 (964)
Q Consensus 307 ~~l~~E~d~~~e~~eel~ee~~~Le~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~r~~kLe~E~k~L~ 386 (964)
+.|+.|..++.++++++..+.--|..+ |.+.. .++...+ +-.+++||..|.+|.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaE----meekG------------~~~~~~s----------s~qfkqlEqqN~rLK 381 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAE----MEEKG------------SDGQAAS----------SYQFKQLEQQNARLK 381 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcC------------CCCcccc----------hHHHHHHHHHHHHHH
Confidence 888999999999999988764444322 22210 0001111 347899999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy3622 387 STIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK 438 (964)
Q Consensus 387 ~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~ 438 (964)
..+-.|++-+.++.. -..++.++-.+...++..|...-+++......+|..
T Consensus 382 dalVrLRDlsA~ek~-d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~ 432 (1243)
T KOG0971|consen 382 DALVRLRDLSASEKQ-DHQKLQKELEKKNSELEELRRQKERLSRELDQAEST 432 (1243)
T ss_pred HHHHHHHhcchHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888885333222 133344443344444444444444444433333333
No 34
>KOG0996|consensus
Probab=97.97 E-value=0.12 Score=64.22 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy3622 700 EQLNMEYESVVKEIKVLKSTLRDVKNENKTVK---EQYSQLKVSYESLQAEMEQL 751 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~---~~~~~Le~~~~~L~~e~~~L 751 (964)
+.+.+++.++...+..++..++.++....... .+++.++..++.++.+.+.+
T Consensus 823 ~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 823 EKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776622111 24455666666666666655
No 35
>KOG0977|consensus
Probab=97.96 E-value=0.051 Score=63.51 Aligned_cols=91 Identities=22% Similarity=0.252 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK-------LEDDRR 840 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~-------LEee~r 840 (964)
++.++.+++....+....+....++...++..+..|...+.+++.....+..++..|..++.+-... .+.+..
T Consensus 273 Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~ 352 (546)
T KOG0977|consen 273 YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIA 352 (546)
T ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH
Confidence 4455555555556666666667777777777777777777777766666666666666554332222 566788
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy3622 841 KLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 841 ~L~~q~~~L~~q~~~Ll~ 858 (964)
.+.++|+.|+-+++.|+.
T Consensus 353 ~mReec~~l~~Elq~LlD 370 (546)
T KOG0977|consen 353 KMREECQQLSVELQKLLD 370 (546)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 888899998888888886
No 36
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.91 E-value=0.13 Score=62.63 Aligned_cols=139 Identities=26% Similarity=0.330 Sum_probs=98.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 400 SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEW 479 (964)
Q Consensus 400 ~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~ 479 (964)
...++..|+.+.+.+...+...+.+.+++.....++-+.+..++.++..|...+. .+...-.++-.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~k--------------e~K~rE~rll~ 97 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIK--------------EYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhh
Confidence 4556888888888888888888888888888887777777767766666655543 22222234444
Q ss_pred HHHHHHHhHHHHHHhHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHH---HHH
Q psy3622 480 KNKELELNMEINKQLSNNTE----EINEYKTKLANCEKEIKKCKEALESKAESLDK----LTNKLESMEKEHVS---LTK 548 (964)
Q Consensus 480 ~~eelEr~~~~l~~el~~l~----~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~----~e~~l~rle~e~~~---L~~ 548 (964)
.+.+||.+|-+|++.|..|+ .+..+....+.|+-|...++.++++...=.+- ++..|..++.|..+ |++
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~Lrk 177 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRK 177 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999998888 56888889999999999999999987643332 33344455555444 555
Q ss_pred HHHH
Q psy3622 549 QIED 552 (964)
Q Consensus 549 ~~e~ 552 (964)
+++.
T Consensus 178 EL~~ 181 (717)
T PF09730_consen 178 ELDQ 181 (717)
T ss_pred HHHH
Confidence 5544
No 37
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.90 E-value=0.019 Score=57.55 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 704 MEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLK 783 (964)
Q Consensus 704 ~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~ 783 (964)
..|..+..+++.|+...+.++...+.|-.+.+.++..... +..++..|+.+...+....+-+.
T Consensus 60 ~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~-----------------L~~~i~~Lqeen~kl~~e~~~lk 122 (193)
T PF14662_consen 60 QKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS-----------------LVAEIETLQEENGKLLAERDGLK 122 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhHHHHhhhhHH
Confidence 3344444444555555544444444444444333333333 33334444444444444446666
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 784 ADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALS---VQLSKYQNKLEDDRRKLMEHVTN 848 (964)
Q Consensus 784 ~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~---~~~~~L~~~LEee~r~L~~q~~~ 848 (964)
..+..|......|++.+-..+.-+..-...++.-..++..|. ..++.+...|..+..+|.+|+..
T Consensus 123 ~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q 190 (193)
T PF14662_consen 123 KRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666666666666666666666666555555555 55666666677777777777643
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=97.81 E-value=0.27 Score=63.41 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGEL 814 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El 814 (964)
..+...+..+......+.+.+..+..++..+..++
T Consensus 684 ~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 684 KKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333444444444444444444444444333333
No 39
>KOG0962|consensus
Probab=97.77 E-value=0.29 Score=62.39 Aligned_cols=315 Identities=18% Similarity=0.234 Sum_probs=144.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh---hhHh
Q psy3622 506 TKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE---LKKYNDLKREMDELDSKYQ---VDKN 579 (964)
Q Consensus 506 ~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~---~~~l~elE~e~~~L~~~~~---~~~~ 579 (964)
+....++.++......+.......+..+..+.....+...+...+...... ...+...+..+..+..++. ....
T Consensus 740 ~~i~e~~~~l~~~~~el~~~~~~~e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~ 819 (1294)
T KOG0962|consen 740 KEIPELEKELQEVYEELGDLSEEEEDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIR 819 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 344444555555555555555566666666666666655555444443333 3344444455555555442 5677
Q ss_pred hHHHHHhHhh--HhhhhhhHHHhHHHHhccccchhhhHHHHHHHHhcC-HHH---H-HHHHHHhchhhchhHhhHHhhhh
Q psy3622 580 TLSVLQNDLV--NEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSS-PEI---L-NAVKKKLGVEHFNDESSLNNAKL 652 (964)
Q Consensus 580 tl~~Lq~~l~--~Ek~k~~~L~~ele~L~~~~e~~~~le~~l~ki~~~-~~~---l-~~~~e~i~~e~~~~~Lq~~~~~L 652 (964)
++++++.+.. .++... ++.+++.+.........+.+.+..+-.- ... + ..+......+..+..++..+..+
T Consensus 820 t~~E~~~Ek~~~~~~~~~--~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~ 897 (1294)
T KOG0962|consen 820 TVDELRKEKSKKQESLDK--LRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRL 897 (1294)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888887643 333333 5666666654433311111111110000 000 0 11111223345555666666666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHH----------------H---HH
Q psy3622 653 EVDLKTSQSQISSLTSQHTALQLANSQLILA----------NHNELLQDQMTMTKLHE----------------Q---LN 703 (964)
Q Consensus 653 q~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e----------~~~~l~~~~~~L~~l~e----------------~---l~ 703 (964)
...+..+.+++..+.....+.+....++..+ ....+......|..... + ..
T Consensus 898 ~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 977 (1294)
T KOG0962|consen 898 DSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESE 977 (1294)
T ss_pred HHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHH
Confidence 6666666666666555554444444333222 00111111111111110 0 01
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 704 MEYESVVKEIKVLKSTLRDVKNENKTVKE--QYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEK 781 (964)
Q Consensus 704 ~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~--~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~ 781 (964)
...+.........+..+++....-+.+++ .++.++.++.+++.++..+..++ +.........+. -.
T Consensus 978 e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi-----~~~~~~~~~ee~-------~~ 1045 (1294)
T KOG0962|consen 978 EHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQI-----LEADIKSVKEER-------VK 1045 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHH-------HH
Confidence 11112222222233333333333344444 34455666666665555444422 222222233333 44
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHH
Q psy3622 782 LKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN-------RDDAISALSVQLSKYQNK 834 (964)
Q Consensus 782 l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~-------~~e~~~~L~~~~~~L~~~ 834 (964)
+...+..+..+...+.|+++.++.++..+..+|.. -+++-.++.+..+++.+.
T Consensus 1046 L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~ 1105 (1294)
T KOG0962|consen 1046 LEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNK 1105 (1294)
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666666666666663 235555666666666554
No 40
>KOG0977|consensus
Probab=97.71 E-value=0.12 Score=60.62 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=101.4
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 388 TIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDEL 467 (964)
Q Consensus 388 ~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~ 467 (964)
.|..|.+. +..-..|+--||.++.+|..+|..++.........+.. ..+.++..+...+++..+....++..+
T Consensus 43 El~~LNDR-LA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~------~ye~El~~ar~~l~e~~~~ra~~e~ei 115 (546)
T KOG0977|consen 43 ELQELNDR-LAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKA------KYEAELATARKLLDETARERAKLEIEI 115 (546)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhH------HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455554 44455567888888888888888887766655433211 233444445555555545555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 468 DNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT 547 (964)
Q Consensus 468 ~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~ 547 (964)
..|..+...+...+++.++....-+.. +.........++.+.+-++.-+...++++..+..+..++..++..++
T Consensus 116 ~kl~~e~~elr~~~~~~~k~~~~~re~------~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 116 TKLREELKELRKKLEKAEKERRGAREK------LDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHH------HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 666666666666665555444444333 34455566677777777777777777777777777777777777777
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHH
Q psy3622 548 KQIEDQE----NELKKYNDLKREMDELD 571 (964)
Q Consensus 548 ~~~e~~~----~~~~~l~elE~e~~~L~ 571 (964)
+.++.=+ ....++++|-.++..+.
T Consensus 190 ~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6666522 12234444444444444
No 41
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.68 E-value=5.2e-05 Score=94.39 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3622 559 KYNDLKREMDELDSKY 574 (964)
Q Consensus 559 ~l~elE~e~~~L~~~~ 574 (964)
.+..||.++..+..++
T Consensus 258 ~i~~LE~en~~l~~El 273 (722)
T PF05557_consen 258 HIRELEKENRRLREEL 273 (722)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 42
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.68 E-value=0.15 Score=61.72 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=25.1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 864 KDHYHEEEKNFSDKLNNLHRQKEKLEEKIM 893 (964)
Q Consensus 864 k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~ 893 (964)
.+..+.|+.+...++..+..+++.+..+|.
T Consensus 281 ~E~~~~ELq~~qe~Lea~~qqNqqL~~qls 310 (617)
T PF15070_consen 281 LEMAHQELQEAQEHLEALSQQNQQLQAQLS 310 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 356667788889999999999999999884
No 43
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.65 E-value=0.057 Score=57.85 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=41.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTL 581 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl 581 (964)
..++.....|+.++..+...+...+..-.........++..+..|.. ++.+.+.-.......+..+.+.|
T Consensus 137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~----------~lkeaE~Rae~aE~~v~~Le~~i 206 (237)
T PF00261_consen 137 EAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEE----------KLKEAENRAEFAERRVKKLEKEI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445444444444444444333333333333333333322 22222222222222333455666
Q ss_pred HHHHhHhhHhhhhhhHHHhHHHH
Q psy3622 582 SVLQNDLVNEKLKTTHLKNSLDK 604 (964)
Q Consensus 582 ~~Lq~~l~~Ek~k~~~L~~ele~ 604 (964)
+.|..+|...+.+...+..+++.
T Consensus 207 d~le~eL~~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 207 DRLEDELEKEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66776666665555445555543
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.51 E-value=0.27 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3622 551 EDQENELKKYNDLKREMDELDSKYQ 575 (964)
Q Consensus 551 e~~~~~~~~l~elE~e~~~L~~~~~ 575 (964)
+++..++.+|..||.+++.|..++.
T Consensus 11 dRla~YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 11 DRLASYIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4455677888888888888876553
No 45
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.44 E-value=0.00077 Score=84.02 Aligned_cols=40 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 535 KLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574 (964)
Q Consensus 535 ~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~ 574 (964)
.+..++.++..+..++..+......+.=++.++..|...+
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl 297 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKL 297 (722)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555666665555555555555556666666665544
No 46
>KOG0933|consensus
Probab=97.39 E-value=0.67 Score=57.03 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 703 NMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME 749 (964)
Q Consensus 703 ~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~ 749 (964)
..+|+.+.-+++.+...+...+..+..+...+..|+..+..+.+...
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~ 860 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD 860 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665555555555555555544433
No 47
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.37 E-value=0.64 Score=56.36 Aligned_cols=26 Identities=15% Similarity=0.348 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3622 306 INEIALERDANAEKLQQLIEENTNLS 331 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~ee~~~Le 331 (964)
+..|..+.+....++.+|......|+
T Consensus 38 v~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 38 VRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777776555543
No 48
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.32 E-value=0.23 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 874 FSDKLNNLHRQKEKLEEKIMEHY 896 (964)
Q Consensus 874 ~~~k~~~l~~q~e~l~~~l~e~y 896 (964)
|..-...|+.++.++++++...|
T Consensus 170 y~~~teeLR~e~s~LEeql~q~~ 192 (193)
T PF14662_consen 170 YRSITEELRLEKSRLEEQLSQMQ 192 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555666777777777765443
No 49
>KOG0996|consensus
Probab=97.31 E-value=0.92 Score=56.82 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy3622 117 KLLLLLLLGCAVQCPNK 133 (964)
Q Consensus 117 ~~ll~l~lg~av~~~~~ 133 (964)
..+-.|+.+..|--++|
T Consensus 209 ~~V~~lLk~~gIDleHN 225 (1293)
T KOG0996|consen 209 KDVTKLLKSHGIDLEHN 225 (1293)
T ss_pred HHHHHHHHhcCCCCccc
Confidence 34444555555555554
No 50
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.15 E-value=1.1 Score=54.56 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHH
Q psy3622 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454 (964)
Q Consensus 404 ~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e 454 (964)
+...+..+..+...|+.+...++.........++....+......+.+...
T Consensus 277 l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~ 327 (569)
T PRK04778 277 LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK 327 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455566677777788888888888888777766666666555555444443
No 51
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.15 E-value=0.00038 Score=86.59 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 275 LESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEEN 327 (964)
Q Consensus 275 le~~~~~lk~kl~~l~~~k~~~~el~e~~~~l~~l~~E~d~~~e~~eel~ee~ 327 (964)
+...+..|....+.+..|+..++.+++....+..++.+++.++++++++..-+
T Consensus 279 L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk 331 (713)
T PF05622_consen 279 LRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLK 331 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566777777777776666666666666666666654433
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.10 E-value=1.1 Score=53.75 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy3622 778 ANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGEL 814 (964)
Q Consensus 778 ~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El 814 (964)
+.+..+......+.+...++.++...+..+..++..+
T Consensus 380 Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL 416 (522)
T PF05701_consen 380 EAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL 416 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.06 E-value=1.1 Score=52.98 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=55.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH---H
Q psy3622 794 KGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHE---E 870 (964)
Q Consensus 794 ~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~e---e 870 (964)
+.|+.+.+.|+.+++---..++.|.-.++.|+..+..+....++....+...+..=..--.+|+...-..+--+.+ .
T Consensus 611 eeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK~ 690 (786)
T PF05483_consen 611 EELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVKL 690 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555544444444444444444455555555555566666666666644333222333211111111111 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3622 871 EKNFSDKLNNLHRQKEKLEEKIMEHYRK 898 (964)
Q Consensus 871 ~~~~~~k~~~l~~q~e~l~~~l~e~y~~ 898 (964)
++....++++-..++=.|.++=..+|..
T Consensus 691 q~EtdlrCQhKIAeMVALMEKHK~qYDk 718 (786)
T PF05483_consen 691 QEETDLRCQHKIAEMVALMEKHKHQYDK 718 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456777888778888888887888887
No 54
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.01 E-value=1.1 Score=54.68 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy3622 819 DAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQY 853 (964)
Q Consensus 819 e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~ 853 (964)
.....++..+..|.+. ++++...+..++..+....
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333 3344444444444444433
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.99 E-value=0.7 Score=49.53 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 504 Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
.......++..+..|...+.+.+...+..+..+.+++..+..|...+..
T Consensus 167 ~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~ 215 (237)
T PF00261_consen 167 ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEK 215 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666677777777777777777777777777666666555544
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.94 E-value=1.6 Score=53.03 Aligned_cols=87 Identities=21% Similarity=0.270 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHHHHHHHHH
Q psy3622 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ-------EN-ELKKYNDLKREMDELD 571 (964)
Q Consensus 500 ~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~-------~~-~~~~l~elE~e~~~L~ 571 (964)
....|+..+..+|.+...+-+..+. +.-..+..-+.++..++..|...++.+ .. .+..+.+|....+++.
T Consensus 166 a~~~le~~l~~~e~~f~~f~~l~~~--Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~ 243 (569)
T PRK04778 166 ALDELEKQLENLEEEFSQFVELTES--GDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELV 243 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4467777777777776665544332 122233334444444444444444443 33 5677777777777776
Q ss_pred hhh-----hhhHhhHHHHHhHh
Q psy3622 572 SKY-----QVDKNTLSVLQNDL 588 (964)
Q Consensus 572 ~~~-----~~~~~tl~~Lq~~l 588 (964)
.+- -.....+..++..+
T Consensus 244 ~~gy~~~~~~i~~~i~~l~~~i 265 (569)
T PRK04778 244 EEGYHLDHLDIEKEIQDLKEQI 265 (569)
T ss_pred HcCCCCCCCChHHHHHHHHHHH
Confidence 543 13455666666543
No 57
>KOG0971|consensus
Probab=96.92 E-value=1.7 Score=52.88 Aligned_cols=196 Identities=19% Similarity=0.269 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHH
Q psy3622 382 NKRLLSTIESLHENAFYESGERILELEK----------EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINE 451 (964)
Q Consensus 382 ~k~L~~~ie~l~~~~~~e~~~k~~~LEk----------ek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~ 451 (964)
.+.|...++.++..+. +=..|+.+|++ -+.++.....+|+.++.+.+....++-........++....+
T Consensus 233 vrdLtEkLetlR~kR~-EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad 311 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRA-EDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTAD 311 (1243)
T ss_pred HHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554421 22233444444 344444445555555555554433333333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q psy3622 452 SYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE--EINEYKTKLANCEKEIKKCKEALESKAESL 529 (964)
Q Consensus 452 ~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~--~~~~Le~~~~~LE~E~~~l~e~lee~e~~l 529 (964)
.++=.+...+-.+....+|+.+...++..+++|+...+-|+.++++-- .-..-.-...+||..+.+|++.+--+.+-.
T Consensus 312 ~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDls 391 (1243)
T KOG0971|consen 312 AIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLS 391 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 443333333346777888888888888888888887777777764433 001111244678888888888877555433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHh
Q psy3622 530 DKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588 (964)
Q Consensus 530 e~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l 588 (964)
.....-..++.+++...+.+++. |......|+.+.....-+|..|++..
T Consensus 392 A~ek~d~qK~~kelE~k~sE~~e----------L~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 392 ASEKQDHQKLQKELEKKNSELEE----------LRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555544444444 33333344444444555556666543
No 58
>KOG0964|consensus
Probab=96.91 E-value=1.9 Score=53.15 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy3622 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEY 435 (964)
Q Consensus 372 ~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~l 435 (964)
...+.++..+++.|...+..+... .+...+.-.+.-+.+..|.-++.+|+.++..-.++....
T Consensus 264 ~d~~~~~~~~i~ele~~l~~l~~e-keq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~ 326 (1200)
T KOG0964|consen 264 EDESEDLKCEIKELENKLTNLREE-KEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLA 326 (1200)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhH
Confidence 445666677777777777776663 344444445555666677777777777777655554433
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.81 E-value=0.81 Score=56.35 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy3622 374 KALRLELENKRLLSTIESLHENAFYESGER--------------ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKF 439 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k--------------~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~ 439 (964)
.+.+||.+.++|..+|...+.. ..+.... +..+.+++..|+.++..|.......+...+.+|++.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~-E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQS-EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999886664 3333333 334444444444444444444444444444444444
Q ss_pred hh
Q psy3622 440 TK 441 (964)
Q Consensus 440 k~ 441 (964)
..
T Consensus 498 ~e 499 (697)
T PF09726_consen 498 AE 499 (697)
T ss_pred HH
Confidence 33
No 60
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.80 E-value=1.4 Score=54.27 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQYHEL 856 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~~~L 856 (964)
+-.+...++|..++..|+.+++..+.++..++.++..+......-......|... +.+.+.||..-+.--.+ .+-=
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtr-iKld 619 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETR-IKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 3455556677777777888888888888888777765542211111111112221 45555555544322211 1111
Q ss_pred HhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3622 857 LTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRK 898 (964)
Q Consensus 857 l~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~ 898 (964)
|..+|-+... ++...+.++-.-+.++..|..+|.+.--+
T Consensus 620 LfsaLg~akr---q~ei~~~~~~~~d~ei~~lk~ki~~~~av 658 (697)
T PF09726_consen 620 LFSALGDAKR---QLEIAQGQLRKKDKEIEELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2244443332 23446677777788888888888775555
No 61
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=96.79 E-value=0.0091 Score=55.27 Aligned_cols=68 Identities=21% Similarity=0.462 Sum_probs=49.9
Q ss_pred hhHHHHHhhcCCC---CCCCCcc-cccccHHHHHHHHHhhCCCCCCCCCC-CCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSN---PDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSVV-PSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~---~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~~-~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..|+.|||..... +.++.++ +||.||++|..+++.+.|..++.... +...++.....|+..+++.+..
T Consensus 2 ~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~ 74 (108)
T PF00307_consen 2 KELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEK 74 (108)
T ss_dssp HHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHH
Confidence 4689999988632 3457787 99999999999999999998644433 2212566778888888774433
No 62
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.73 E-value=0.35 Score=46.82 Aligned_cols=105 Identities=19% Similarity=0.284 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKKCKEALESKA 526 (964)
Q Consensus 448 ~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~-~~~~Le~~~~~LE~E~~~l~e~lee~e 526 (964)
.+...+..+++++...+.....+..+....+..+..|+.....+..++..|. .+..+.+.+..|.+++...+..+.+++
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444 456677777788888888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 527 ESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 527 ~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
.....+.+.+..++.+..++......
T Consensus 101 ~~~~~~~~~l~~~E~ek~q~~e~~~~ 126 (140)
T PF10473_consen 101 SLNSSLENLLQEKEQEKVQLKEESKS 126 (140)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777775555444433
No 63
>KOG0612|consensus
Probab=96.66 E-value=3.3 Score=52.47 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCchhhhHH
Q psy3622 113 LENMKLLLLLLLGCAVQCPNKETFIER 139 (964)
Q Consensus 113 ~~el~~ll~l~lg~av~~~~~~~~I~~ 139 (964)
++.+.++...=+..|+-+=++-.||.|
T Consensus 173 pE~~ArFY~aEiVlAldslH~mgyVHR 199 (1317)
T KOG0612|consen 173 PEDWARFYTAEIVLALDSLHSMGYVHR 199 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccceec
Confidence 677888888777788877777778776
No 64
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.66 E-value=1.4 Score=48.09 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=34.3
Q ss_pred hhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 642 NDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA-------NHNELLQDQMTMTKLHEQLNMEYE 707 (964)
Q Consensus 642 ~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e-------~~~~l~~~~~~L~~l~e~l~~E~E 707 (964)
...|+.++..|..++.+....+..|...+..|......+... ..+.|++-...+..-.+.+...|+
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655555555544332222 344555555555555555544444
No 65
>KOG4673|consensus
Probab=96.62 E-value=2.3 Score=50.21 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=14.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 867 YHEEEKNFSDKLNNLHRQKEKLEEKI 892 (964)
Q Consensus 867 ~~ee~~~~~~k~~~l~~q~e~l~~~l 892 (964)
|.+|...+.++++++......+....
T Consensus 737 ~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 737 AQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666665555544444
No 66
>PRK11637 AmiB activator; Provisional
Probab=96.56 E-value=2 Score=50.43 Aligned_cols=25 Identities=0% Similarity=0.044 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 371 AQAKALRLELENKRLLSTIESLHEN 395 (964)
Q Consensus 371 ~~~r~~kLe~E~k~L~~~ie~l~~~ 395 (964)
...++..++.+++.+...+..++..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~ 69 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQ 69 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555565566555555555443
No 67
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.55 E-value=1.5 Score=49.64 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=71.4
Q ss_pred hchhhchhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 636 LGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKV 715 (964)
Q Consensus 636 i~~e~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~ 715 (964)
+.+...+..|...+.+-+..|..|+.....|.....+||..... + .-|-.+-..|..-.+.|+.++-.
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~k-----------Q-qvfvDiinkLk~niEeLIedKY~ 380 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITK-----------Q-QVFVDIINKLKENIEELIEDKYR 380 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhh-----------h-hHHHHHHHHHHHHHHHHHHhHhH
Confidence 33345556666667777777777777777777777777775542 1 11222334478888899888888
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 716 LKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFES 755 (964)
Q Consensus 716 Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~ 755 (964)
+.-...+++..+++|...+..-+..+.+-..+++.|..+.
T Consensus 381 viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel 420 (527)
T PF15066_consen 381 VILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLEL 420 (527)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888788888888887776666665555555555555433
No 68
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.54 E-value=2.8 Score=50.31 Aligned_cols=67 Identities=19% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK 834 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~ 834 (964)
...++............+...|+.....|+.++...+..+..+........-.+..|..++..+...
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~e 352 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSE 352 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333444444433333
No 69
>KOG4673|consensus
Probab=96.45 E-value=2.9 Score=49.44 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 290 EYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEE 326 (964)
Q Consensus 290 ~~~k~~~~el~e~~~~l~~l~~E~d~~~e~~eel~ee 326 (964)
+.|-.++..+..+ ..-+..|||.++..+.-+.++
T Consensus 405 ~e~~QRva~lEkK---vqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 405 EEYHQRVATLEKK---VQALTKERDALRREQKSLKKE 438 (961)
T ss_pred HHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHH
Confidence 3455555555443 455566777777666655554
No 70
>PRK11637 AmiB activator; Provisional
Probab=96.27 E-value=3.4 Score=48.40 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 503 EYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT 547 (964)
Q Consensus 503 ~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~ 547 (964)
.|...+..++.+...+...+.+.+.....+.......+..+..|.
T Consensus 181 ~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~ 225 (428)
T PRK11637 181 ELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE 225 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433333333333333333333333
No 71
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.19 E-value=1.4 Score=43.29 Aligned_cols=130 Identities=13% Similarity=0.271 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHH
Q psy3622 701 QLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSN-------LRAEHSKLKDDFR 773 (964)
Q Consensus 701 ~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~-------l~~e~~~l~~e~~ 773 (964)
.++.+.+......+.+....+.++..+..+...+..|..++..|+.+++.+......... ....+..|...+.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 356666666666666666666666666666666666666666666665554443332211 1112223444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3622 774 ILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSK 830 (964)
Q Consensus 774 ~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~ 830 (964)
-|-.+.++....+................+.+.+..++.+...|..++..+..+|..
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555555555566666666666666555555555443
No 72
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.13 E-value=1.2 Score=47.10 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHH
Q psy3622 806 SLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQK 885 (964)
Q Consensus 806 ~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~ 885 (964)
+++.|..++..++++...|.-++..+ .++..++..++..+......+.....+.......+..........+..+.
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l----~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~ 165 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAEL----MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444443 33444444445444444444444444444444455555555555566666
Q ss_pred HHHHHHH
Q psy3622 886 EKLEEKI 892 (964)
Q Consensus 886 e~l~~~l 892 (964)
..+..++
T Consensus 166 ~~L~~~l 172 (239)
T COG1579 166 EELKEKL 172 (239)
T ss_pred HHHHHhc
Confidence 6666665
No 73
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.98 E-value=3.2 Score=45.36 Aligned_cols=104 Identities=17% Similarity=0.234 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhhHHHHHH
Q psy3622 369 SSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTE-YESKFTKLETEIR 447 (964)
Q Consensus 369 ~~~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~-lE~~~k~l~ee~~ 447 (964)
+....++..|..+++.|...++..+.. +..|..++..|...-..+....+.....+.. +=+++..+.+++.
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~--------~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe 94 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKAR--------CKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888887766653 5555556666555555554444443333222 1233333444444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 448 KINESYQNL-ELQIQVRNDELDNMNREKQKLEWK 480 (964)
Q Consensus 448 ~lq~~~e~~-~~~~~~le~~~~~l~~e~~~l~~~ 480 (964)
.|...++.= ++-.+++.+.+..+..++..+...
T Consensus 95 ~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~ 128 (310)
T PF09755_consen 95 TLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQ 128 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433222211 222334444444444444444433
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.91 E-value=2.9 Score=44.31 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 504 Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
+......|+.++..+...++.+..........+.+.+.++...+..++.
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444454445544444444444
No 75
>PRK01156 chromosome segregation protein; Provisional
Probab=95.89 E-value=8.7 Score=49.66 Aligned_cols=14 Identities=7% Similarity=0.204 Sum_probs=9.3
Q ss_pred CChhhhhhHhhhhh
Q psy3622 209 GNSECQHLAVELAD 222 (964)
Q Consensus 209 ~~~~~~~l~~e~ad 222 (964)
+|++++.++.++.|
T Consensus 147 ~~~~r~~~ld~~~~ 160 (895)
T PRK01156 147 DPAQRKKILDEILE 160 (895)
T ss_pred CHHHHHHHHHHHhC
Confidence 35677777777665
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.87 E-value=4.7 Score=49.04 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 799 EKRKLTLSLTELEG 812 (964)
Q Consensus 799 e~~~lk~~l~~le~ 812 (964)
....++..+..++.
T Consensus 359 ~~~~l~~ei~~l~~ 372 (562)
T PHA02562 359 KAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 77
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=95.77 E-value=6.3 Score=47.04 Aligned_cols=103 Identities=27% Similarity=0.361 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESL------DKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ 575 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~l------e~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~ 575 (964)
.++.+....-+-++..++..+.+...-+ +.+...+.-.+.++..+-.. ....+++|+..+-.......
T Consensus 394 eEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~------~ekev~dLe~~l~~~~~~eq 467 (786)
T PF05483_consen 394 EEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQI------REKEVHDLEIQLTTIKESEQ 467 (786)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHhhH
Confidence 3344444444555666776666655322 22222232333333322111 12255666655544443334
Q ss_pred hhHhhHHHHHhHhhHhhhhhhHHHhHHHHhccccc
Q psy3622 576 VDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMD 610 (964)
Q Consensus 576 ~~~~tl~~Lq~~l~~Ek~k~~~L~~ele~L~~~~e 610 (964)
.-..+|.+|..++..++++...|....+.|.++..
T Consensus 468 ~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk 502 (786)
T PF05483_consen 468 HYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKK 502 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999888888777767777766543
No 78
>KOG0250|consensus
Probab=95.59 E-value=9.9 Score=48.05 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=23.8
Q ss_pred CchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchh
Q psy3622 98 PDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKET 135 (964)
Q Consensus 98 pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~ 135 (964)
|.++.|+-++-| |.-.|.--|.+.|||-....++..
T Consensus 62 ~~vNfI~G~NGS--GKSAIltAl~lglG~rAs~tnRgs 97 (1074)
T KOG0250|consen 62 PRVNFIVGNNGS--GKSAILTALTLGLGGRASATNRGS 97 (1074)
T ss_pred CCceEeecCCCC--cHHHHHHHHHHhhccccccccchh
Confidence 555566555544 677777777788888776666654
No 79
>KOG0994|consensus
Probab=95.48 E-value=10 Score=47.65 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3622 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKE 542 (964)
Q Consensus 504 Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e 542 (964)
|..++...+.-+..+++.......+.+..+..+...+.-
T Consensus 1424 l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as 1462 (1758)
T KOG0994|consen 1424 LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANAS 1462 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444333333
No 80
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=95.40 E-value=0.018 Score=57.35 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHhhcCCCCCCCCcc-cccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHH
Q psy3622 19 LVTWLLSCLSNPDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTI 78 (964)
Q Consensus 19 L~~W~~tf~~~~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i 78 (964)
|..||++++. +.+..++ -||+||+.+++|++...|....-.-..+.+....|..||..+
T Consensus 1 l~~WL~~l~l-s~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~~s~~~Kl~NW~~L 60 (158)
T PF06294_consen 1 LLKWLQSLDL-SRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNGNSVAQKLNNWETL 60 (158)
T ss_dssp HHHHHHHS---S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS----SSHHHHHHHHHHH
T ss_pred ChHHHhcCCC-CCCCCchHHHcccccHHHHHHHHHCCCCccccccCCCCCHHHHHHHHHHH
Confidence 5789999864 4445555 599999999999999999886555544444578999999988
No 81
>KOG0995|consensus
Probab=95.38 E-value=7.8 Score=45.55 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
+.-+..+-.|+.-...+...++++...+..++.++..++......++.-++
T Consensus 435 ~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee 485 (581)
T KOG0995|consen 435 HEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE 485 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555544444444444
No 82
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=95.19 E-value=0.034 Score=50.83 Aligned_cols=69 Identities=22% Similarity=0.348 Sum_probs=48.9
Q ss_pred hhHHHHHhhcCCCC--CCCCc-ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNP--DRLSD-YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSL 85 (964)
Q Consensus 17 ~~L~~W~~tf~~~~--~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~y 85 (964)
..++.|++.+.... .++.+ .++|.||++|..+++.+.|..++........+...+..|+...+..+..+
T Consensus 3 ~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~~~~~~~~~~Ni~~~l~~~~~~ 74 (103)
T smart00033 3 KTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNASLSRFKKIENINLALSFAEKL 74 (103)
T ss_pred HHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccccccHHHHHHhHHHHHHHHHHc
Confidence 56899999986422 22333 57999999999999999998765433222223456778888888777763
No 83
>PRK09039 hypothetical protein; Validated
Probab=95.15 E-value=4.9 Score=45.53 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 769 KDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK 834 (964)
Q Consensus 769 ~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~ 834 (964)
+.....+.......+..|...+.+...|+.++..|+.++..++.+++..+.+....+.++..|...
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~ 180 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRR 180 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444556666666666666777777777777777777777776665555555555554433
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.06 E-value=3.4 Score=39.94 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 835 LEDDRRKLMEHVTNLLAQYHELL 857 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~q~~~Ll 857 (964)
|+.++..+...+..|..||.-|.
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.94 E-value=13 Score=45.76 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=18.6
Q ss_pred hchhHhhHHhhhhHHHHhhhHHHHHHHHH
Q psy3622 640 HFNDESSLNNAKLEVDLKTSQSQISSLTS 668 (964)
Q Consensus 640 ~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~ 668 (964)
...+.+..++-+|..-+.|=..||+.|..
T Consensus 583 ~d~e~l~eqilKLKSLLSTKREQIaTLRT 611 (717)
T PF09730_consen 583 KDKEELQEQILKLKSLLSTKREQIATLRT 611 (717)
T ss_pred ccHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777766776667766653
No 86
>KOG4593|consensus
Probab=94.94 E-value=12 Score=45.13 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhhHHHHHHHH
Q psy3622 785 DFRALQEEHKGNHMEKRKLT 804 (964)
Q Consensus 785 ~~~~Lq~e~~~L~~e~~~lk 804 (964)
++.+++.+..........++
T Consensus 601 ev~qlk~ev~s~ekr~~rlk 620 (716)
T KOG4593|consen 601 EVAQLKKEVESAEKRNQRLK 620 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444
No 87
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.88 E-value=4 Score=39.47 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy3622 817 RDDAISALSVQLSKYQNK---LEDDRRKLMEHVTN 848 (964)
Q Consensus 817 ~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~ 848 (964)
|..+-..|...+..+... |...|+-|.+|++.
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444433 44445555555544
No 88
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.81 E-value=4.4 Score=39.70 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3622 721 RDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEK 800 (964)
Q Consensus 721 ~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~ 800 (964)
..|+.+.-+..+++..++.++..+..+...++.++. .+...+..+..+++.+.............. ....+..
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~---sL~~K~~~lE~eld~~~~~l~~~k~~lee~----~~~~~~~ 75 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEIT---SLQKKNQQLEEELDKLEEQLKEAKEKLEES----EKRKSNA 75 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhH
Confidence 345556666666666777777777666555555333 344455555555544444433333333221 1222233
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q psy3622 801 RKLTLSLTELEGELANRDDAI 821 (964)
Q Consensus 801 ~~lk~~l~~le~El~~~~e~~ 821 (964)
..|.+.+..++.++.......
T Consensus 76 E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 355566666666665544333
No 89
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.70 E-value=4.5 Score=39.29 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3622 761 LRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELE 811 (964)
Q Consensus 761 l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le 811 (964)
.++++..|..++..+.....++...+..+..+...|-..+...+..+.+++
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333333333333333333
No 90
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=94.70 E-value=0.098 Score=48.23 Aligned_cols=67 Identities=18% Similarity=0.309 Sum_probs=48.2
Q ss_pred hhHHHHHhhcCCCCC--CCC-cccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPD--RLS-DYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~--~~~-~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..++.|++.+..... ++. =.++|.||++|..+++.+.|..++..... ..+...+..|+..+++.+..
T Consensus 4 ~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~-~~~~~~~~~Ni~~~l~~~~~ 73 (107)
T cd00014 4 EELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN-PLSRFKRLENINLALNFAEK 73 (107)
T ss_pred HHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccccc-ccchhhHHHHHHHHHHHHHH
Confidence 467999999964222 132 23799999999999999999876443221 23355677899998888876
No 91
>KOG1029|consensus
Probab=94.58 E-value=14 Score=44.57 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred hhHHhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q psy3622 645 SSLNNAKLEVDLKTSQSQISSLTSQHTALQL 675 (964)
Q Consensus 645 Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~ 675 (964)
+...++.++.++.+|+-++..|......+..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~ 465 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRV 465 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 4556677888888888877776655554443
No 92
>PF13514 AAA_27: AAA domain
Probab=94.53 E-value=24 Score=46.84 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3622 227 LRKQRLELEEKSEHLT 242 (964)
Q Consensus 227 lr~~~~eleek~~~L~ 242 (964)
+..+...|+...+.|-
T Consensus 128 l~~~~~~L~~ea~~Lf 143 (1111)
T PF13514_consen 128 LSQVLKQLDKEADELF 143 (1111)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444444444443
No 93
>PRK09039 hypothetical protein; Validated
Probab=94.46 E-value=10 Score=43.00 Aligned_cols=20 Identities=20% Similarity=0.214 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy3622 702 LNMEYESVVKEIKVLKSTLR 721 (964)
Q Consensus 702 l~~E~E~l~~e~e~Lk~~~~ 721 (964)
|..+......++..+...+.
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa 63 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIA 63 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444433
No 94
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.31 E-value=17 Score=44.21 Aligned_cols=74 Identities=23% Similarity=0.363 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q psy3622 500 EINEYKTKLANCEKEIKKCKEALES-----KAESLDKLTNKLESMEKEHVSLTKQIEDQE-NELKKYNDLKREMDELDSK 573 (964)
Q Consensus 500 ~~~~Le~~~~~LE~E~~~l~e~lee-----~e~~le~~e~~l~rle~e~~~L~~~~e~~~-~~~~~l~elE~e~~~L~~~ 573 (964)
....|+..+..+|.....+.+.... ...-+..+...+..++..+..+=+-+..+. ..+..+.+|....+.+..+
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~ 241 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEE 241 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHC
Confidence 4466777777777766665544332 222333444444444444444333333322 3455666666666666544
No 95
>KOG0250|consensus
Probab=94.26 E-value=21 Score=45.23 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=14.7
Q ss_pred hhHHhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q psy3622 645 SSLNNAKLEVDLKTSQSQISSLTSQHTALQL 675 (964)
Q Consensus 645 Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~ 675 (964)
+...+..++.++..++.++..+..+..+...
T Consensus 659 ~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~ 689 (1074)
T KOG0250|consen 659 FDDEIEDLEREASRLQKEILELENQRREAEK 689 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544444444443333
No 96
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.25 E-value=10 Score=41.57 Aligned_cols=139 Identities=18% Similarity=0.202 Sum_probs=70.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Q psy3622 368 TSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIR 447 (964)
Q Consensus 368 ~~~~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~ 447 (964)
-+....++..|+.||..|......|... ....|..-+.|-..| ..++...+.....+....-.-.++..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~e--------t~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTE--------TDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH--------HhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 3446778888999999999888887764 122333333332222 22222233332222222222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAE 527 (964)
Q Consensus 448 ~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~~~~~Le~~~~~LE~E~~~l~e~lee~e~ 527 (964)
..++.+..+-.++-+++..+..+..++..+...+.. ....-..|..|+..+++.+.+..+
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~--------------------ske~Q~~L~aEL~elqdkY~E~~~ 290 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA--------------------SKESQRQLQAELQELQDKYAECMA 290 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555444322 222333455666667777776666
Q ss_pred hHHHHHHHHH
Q psy3622 528 SLDKLTNKLE 537 (964)
Q Consensus 528 ~le~~e~~l~ 537 (964)
-+.+...++.
T Consensus 291 mL~EaQEElk 300 (306)
T PF04849_consen 291 MLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHH
Confidence 6665544443
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.19 E-value=10 Score=41.15 Aligned_cols=81 Identities=15% Similarity=0.311 Sum_probs=38.7
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhH
Q psy3622 651 KLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEY-------ESVVKEIKVLKSTLRDV 723 (964)
Q Consensus 651 ~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e~~~~l~~~~~~L~~l~e~l~~E~-------E~l~~e~e~Lk~~~~~L 723 (964)
.|..++.+..+..+++...+..-++.-..++- ++.+..+.+..+++.+..+. +-|.+++....+....|
T Consensus 88 rLEtEiES~rsRLaaAi~d~dqsq~skrdlel----afqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsL 163 (305)
T PF14915_consen 88 RLETEIESYRSRLAAAIQDHDQSQTSKRDLEL----AFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSL 163 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHH----HHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHH
Confidence 45555566666566555555444443222222 34444455555555444444 44444444445555555
Q ss_pred HHHHHHHHHHHH
Q psy3622 724 KNENKTVKEQYS 735 (964)
Q Consensus 724 e~e~r~l~~~~~ 735 (964)
+.+.....+.++
T Consensus 164 e~elh~trdaLr 175 (305)
T PF14915_consen 164 EIELHHTRDALR 175 (305)
T ss_pred HHHHHHHHHHHH
Confidence 555444444333
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.17 E-value=5.2 Score=45.03 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q psy3622 700 EQLNMEYESVVKEIKVLKSTLRDV 723 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~Lk~~~~~L 723 (964)
+.+..++..+......+......+
T Consensus 159 ~~L~~D~~~L~~~~~~l~~~~~~l 182 (325)
T PF08317_consen 159 ELLQEDYAKLDKQLEQLDELLPKL 182 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333
No 99
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.95 E-value=12 Score=41.37 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=16.2
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 863 DKDHYHEEEKNFSDKLNNLHRQKEKLEEKI 892 (964)
Q Consensus 863 ~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l 892 (964)
|-|..-.|.|-+..++..++.+..-+...|
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i 219 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTI 219 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555666666665555554444
No 100
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.91 E-value=9.3 Score=39.78 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH-HH-HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy3622 463 RNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE-EI-NEYKTKLANCEKEIKKCKEALESKAESLDKL 532 (964)
Q Consensus 463 le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~-~~-~~Le~~~~~LE~E~~~l~e~lee~e~~le~~ 532 (964)
++..+..|.-+.+.+...+..++++...|........ .+ ....-+.--||+-+..+.+.+|..++.+.+.
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443332221 00 1111122245555666666666666666554
No 101
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.90 E-value=19 Score=43.40 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHhHhhHhhhhhhHHHhHHH
Q psy3622 559 KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLD 603 (964)
Q Consensus 559 ~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~~Ek~k~~~L~~ele 603 (964)
.+.+|+.+......+...+..+|.+=-+.+.-|++.++-|..++.
T Consensus 339 qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELs 383 (739)
T PF07111_consen 339 QVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELS 383 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 444555544444444444444444444444444444333444443
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.81 E-value=13 Score=40.95 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 785 DFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK 834 (964)
Q Consensus 785 ~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~ 834 (964)
++..|..+...-.-+....+.+|+.+..++..++.++..+-++..+|..+
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~ 263 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQH 263 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33333333333333333444444444444444444444444444444444
No 103
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.78 E-value=21 Score=43.42 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=30.9
Q ss_pred hHHHhhhhhHHHHHhhcCCCCCCCCcccccccHHH---HHHHHHhhCCCCC
Q psy3622 10 EIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIY---IHEVYLLIDPEPV 57 (964)
Q Consensus 10 ~~~~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~---l~~vl~~iDp~~~ 57 (964)
++|.|+-++|-.-=.. .|.++.++.+|+-..+ ...+|..|||+..
T Consensus 3 e~d~ii~~~L~~~g~~---~~~~~~sl~~ft~e~~v~~~~~cL~~I~p~~~ 50 (594)
T PF05667_consen 3 EADEIIIHSLRQIGCD---IPEDVQSLKQFTTELLVEAVVRCLRVIDPSLG 50 (594)
T ss_pred HHHHHHHHHHHHcCCc---ccCCcccHhhCCHHHHHHHHHHHHHHhCcccc
Confidence 6777766665443222 3566888888888875 4578899999883
No 104
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.75 E-value=14 Score=41.23 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQYHE 855 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~~~ 855 (964)
+.+...+..--.-...++.++..+-..+..++.+...|+.++..-+..+..+... ++.+...+..+++.|..=.+.
T Consensus 226 ~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRa 304 (309)
T PF09728_consen 226 EEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRA 304 (309)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344445555666666666666777777766665555555554443 555566666666666554433
No 105
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.53 E-value=13 Score=40.28 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 835 LEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
+++....|++..-.|++|......
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777766554444
No 106
>KOG0980|consensus
Probab=93.43 E-value=26 Score=43.35 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3622 765 HSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGE 813 (964)
Q Consensus 765 ~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~E 813 (964)
+..|.+.+..+..+..++...+.....-++.++.++..+..++..++..
T Consensus 468 ~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 468 NTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444
No 107
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.43 E-value=40 Score=45.58 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHh
Q psy3622 559 KYNDLKREMDELDS 572 (964)
Q Consensus 559 ~l~elE~e~~~L~~ 572 (964)
++..|+.++..+..
T Consensus 653 ~~~~L~~~i~~l~~ 666 (1486)
T PRK04863 653 RKQALDEEIERLSQ 666 (1486)
T ss_pred HHHHHHHHHHhhhc
Confidence 66666666666654
No 108
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.42 E-value=13 Score=40.72 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3622 731 KEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDF 772 (964)
Q Consensus 731 ~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~ 772 (964)
+.+++++...-+.|..-+++++.-+.....++..+.+|...+
T Consensus 74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL 115 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQL 115 (401)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345555555555666666666665555555555555555554
No 109
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.25 E-value=4.3 Score=38.43 Aligned_cols=89 Identities=16% Similarity=0.238 Sum_probs=59.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q psy3622 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNT 580 (964)
Q Consensus 501 ~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~t 580 (964)
+..|...++.+|.|+.-++..+.......+.+..++.++-.++..++.....+..+..++.+++.....+..=+..-...
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ 97 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEE 97 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46778888999999999999999888888888777777777777666655554444444544444444433222234455
Q ss_pred HHHHHhHhh
Q psy3622 581 LSVLQNDLV 589 (964)
Q Consensus 581 l~~Lq~~l~ 589 (964)
+++|+.|+.
T Consensus 98 veEL~~Dv~ 106 (120)
T PF12325_consen 98 VEELRADVQ 106 (120)
T ss_pred HHHHHHHHH
Confidence 666666644
No 110
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.17 E-value=19 Score=41.16 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Q psy3622 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~ 453 (964)
-+.+|...|++-+..|.+|+-. ..-|++..+.|+..+-+-+.=++.+.......|..+. .+=.
T Consensus 318 vL~kLk~tn~kQq~~IqdLq~s--------N~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIe----dKY~----- 380 (527)
T PF15066_consen 318 VLQKLKHTNRKQQNRIQDLQCS--------NLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIE----DKYR----- 380 (527)
T ss_pred HHHHHHhhhHHHHHHHHHhhhc--------cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----hHhH-----
Confidence 3455666666666666665543 3445555555554444333333333322222221111 1000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH
Q psy3622 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE 499 (964)
Q Consensus 454 e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~ 499 (964)
.-.+.++.++.+..|.......+..+.+-+.++++|+-++..++
T Consensus 381 --viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k 424 (527)
T PF15066_consen 381 --VILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIK 424 (527)
T ss_pred --hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 01122344555555555555555555555556666665554444
No 111
>KOG0980|consensus
Probab=93.16 E-value=28 Score=43.02 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3622 763 AEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEG 812 (964)
Q Consensus 763 ~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~ 812 (964)
.....+++....+....+.....+..+..++..+..++..++..+..+..
T Consensus 473 d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 473 DQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33333444444444444444444444444444444444444444444333
No 112
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.08 E-value=3.1 Score=39.33 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=19.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 713 IKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQL 751 (964)
Q Consensus 713 ~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L 751 (964)
.+.|.+.++.++.+...++.++..++..-..+..++-.|
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665555555555544444444444333
No 113
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.04 E-value=26 Score=42.33 Aligned_cols=33 Identities=15% Similarity=0.038 Sum_probs=17.6
Q ss_pred HhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3622 644 ESSLNNAKLEVDLKTSQSQISSLTSQHTALQLA 676 (964)
Q Consensus 644 ~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~ 676 (964)
+|+.+....+.....++.++.+...++..+...
T Consensus 377 tLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ea 409 (739)
T PF07111_consen 377 TLQAELSRAQEARRRLQQQTASAEEQLKLVSEA 409 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555554444433
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.01 E-value=18 Score=40.35 Aligned_cols=133 Identities=13% Similarity=0.184 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH
Q psy3622 420 DLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE 499 (964)
Q Consensus 420 ~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~ 499 (964)
....++...+......+.....+...+.+.+..+.-+..+.+++.+.+..+..+...+..+.+.|--..+.|+.-...|+
T Consensus 106 ~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk 185 (499)
T COG4372 106 AARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLK 185 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333333333333334444444444444455666677777777766666666665555555566665555555
Q ss_pred -HHHHHHHHHHhHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 500 -EINEYKTKLANCEKEIKKC---KEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 500 -~~~~Le~~~~~LE~E~~~l---~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
.+.+|...-.+.|.+-..+ +.+++..+.++............++++.-+.++.
T Consensus 186 ~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q 242 (499)
T COG4372 186 SQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQ 242 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566664443 4444444444544444444455555555444444
No 115
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.82 E-value=14 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy3622 700 EQLNMEYESVVKEIKVLKSTLR 721 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~Lk~~~~ 721 (964)
+.+..++..+......+.....
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~ 175 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKP 175 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 116
>KOG0978|consensus
Probab=92.39 E-value=33 Score=41.94 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 703 NMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKL 782 (964)
Q Consensus 703 ~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l 782 (964)
.+.|-.+..+...+......+......+..++..++.+...+......+..+..........+++ ..-.+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk----------~~~e~ 564 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKK----------KAQEA 564 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH----------HHHHH
Confidence 33444444444444444444444444444444555544444444433333333332222222222 22333
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy3622 783 KADFRALQEEHKGNHMEKRKLTLSLTELEGELA 815 (964)
Q Consensus 783 ~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~ 815 (964)
......|+.+.....+.+..++.+..++..++.
T Consensus 565 ~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele 597 (698)
T KOG0978|consen 565 KQSLEDLQIELEKSEAKLEQIQEQYAELELELE 597 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554444444
No 117
>KOG0946|consensus
Probab=92.27 E-value=35 Score=41.86 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3622 800 KRKLTLSLTELEGELANRDDAISALSVQLSK 830 (964)
Q Consensus 800 ~~~lk~~l~~le~El~~~~e~~~~L~~~~~~ 830 (964)
++....++.+++.+++.++++++.+-..+..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666666666666666655544433
No 118
>KOG1853|consensus
Probab=92.06 E-value=15 Score=38.51 Aligned_cols=7 Identities=43% Similarity=0.786 Sum_probs=3.9
Q ss_pred CCCCCCC
Q psy3622 943 RGTDSDT 949 (964)
Q Consensus 943 ~~~~~~~ 949 (964)
.||||.+
T Consensus 313 ~g~d~~~ 319 (333)
T KOG1853|consen 313 SGNDSNN 319 (333)
T ss_pred cCCCCCC
Confidence 4666643
No 119
>KOG0612|consensus
Probab=91.89 E-value=48 Score=42.66 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=28.6
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy3622 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINES 452 (964)
Q Consensus 399 e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~ 452 (964)
....++..++..+.++..+...++...+.......+.-.....+..+...++..
T Consensus 585 ~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~ 638 (1317)
T KOG0612|consen 585 DLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEET 638 (1317)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344556666666666666666666666665555444333333344344444433
No 120
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.75 E-value=47 Score=40.45 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=22.3
Q ss_pred ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHHHH
Q psy3622 38 DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYE 87 (964)
Q Consensus 38 dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~yy~ 87 (964)
+=+||++|+.+ .+++-++ +.++ +.++-=|-..||..+..+..
T Consensus 2 ee~d~ii~~~L-~~~g~~~-~~~~------~sl~~ft~e~~v~~~~~cL~ 43 (594)
T PF05667_consen 2 EEADEIIIHSL-RQIGCDI-PEDV------QSLKQFTTELLVEAVVRCLR 43 (594)
T ss_pred cHHHHHHHHHH-HHcCCcc-cCCc------ccHhhCCHHHHHHHHHHHHH
Confidence 45788888765 6666644 2221 11222244566666666544
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.60 E-value=32 Score=38.23 Aligned_cols=111 Identities=12% Similarity=0.188 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH--------------------HHHHHHHHHHhHHHHHHHHHHH
Q psy3622 462 VRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE--------------------EINEYKTKLANCEKEIKKCKEA 521 (964)
Q Consensus 462 ~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~--------------------~~~~Le~~~~~LE~E~~~l~e~ 521 (964)
+....+..|..+...|...+.++...++.|+..+.... .+..+.....+|+.++.-+-+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555554433 3456666777888888888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3622 522 LESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ 575 (964)
Q Consensus 522 lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~ 575 (964)
.+|...+.+....+..|++.|++.+-.--+. + +..|..|=.||+.|..++.
T Consensus 156 keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~--r-ivDIDaLi~ENRyL~erl~ 206 (319)
T PF09789_consen 156 KEELVTERDAYKCKAHRLNHELNYILNGDEN--R-IVDIDALIMENRYLKERLK 206 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--C-cccHHHHHHHHHHHHHHHH
Confidence 8888888888888899998888764221111 0 1134444455555554443
No 122
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.57 E-value=30 Score=37.82 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=20.6
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3622 864 KDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYR 897 (964)
Q Consensus 864 k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~ 897 (964)
.+.||++.=.+..++..+...+..+.+.|.+.-.
T Consensus 209 ade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 209 ADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666655433
No 123
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.41 E-value=11 Score=40.13 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
.+|++.+.++.+++..--.++--.++.+......+.+++.++..++.++++
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666666666666666666666666665
No 124
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=90.35 E-value=40 Score=41.19 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 503 EYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568 (964)
Q Consensus 503 ~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~ 568 (964)
+|-..++..+-|..+++-.+++.-+......-+|...++|+.-|.-.+-.-+.-+.|+.+|-+.++
T Consensus 484 ~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 484 ELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888888999999998899999999999999999887766554455555555544333
No 125
>KOG0946|consensus
Probab=90.10 E-value=56 Score=40.23 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=11.1
Q ss_pred chH-HHhhhHHHHHHHH
Q psy3622 67 NAS-VRIKNFNTIVKNI 82 (964)
Q Consensus 67 ~~~-~~~~Nl~~i~~~i 82 (964)
.|. .|+.|+..++.-|
T Consensus 275 ~W~~Qrv~Nv~~~Lqiv 291 (970)
T KOG0946|consen 275 GWSTQRVQNVIEALQIV 291 (970)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 477 6788888776544
No 126
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.06 E-value=14 Score=39.28 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy3622 728 KTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSL 807 (964)
Q Consensus 728 r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l 807 (964)
++++.+..+++.....+..+.+.++.+..-+..+..+...|..+ +.....++++...++..|...+++++.+.
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~E-------r~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQE-------RMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444444443333333333 34444444444444444444444443333
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 808 TELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQ 852 (964)
Q Consensus 808 ~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q 852 (964)
+....... . +.+++..|.+++..++..
T Consensus 77 ~~~~~~i~-------r-----------~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 77 NKRQEKIQ-------R-----------LYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHH-------H-----------HHHHHHHHHHHHHHHHHH
Confidence 33222222 1 335566667777777664
No 127
>KOG0999|consensus
Probab=90.03 E-value=45 Score=39.04 Aligned_cols=140 Identities=21% Similarity=0.310 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 401 GERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK 480 (964)
Q Consensus 401 ~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~ 480 (964)
..++..|+.+.+++.+++...+.+.+++.+..+++-.-...++.++..+...+. .+.---.++-..
T Consensus 106 l~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elK--------------e~KfRE~Rllse 171 (772)
T KOG0999|consen 106 LQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELK--------------EYKFREARLLSE 171 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 456777888888888888888888888777766655444445544544444432 222222345555
Q ss_pred HHHHHHhHHHHHHhHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHH---HHHH
Q psy3622 481 NKELELNMEINKQLSNNTE----EINEYKTKLANCEKEIKKCKEALESKAESLD----KLTNKLESMEKEHVS---LTKQ 549 (964)
Q Consensus 481 ~eelEr~~~~l~~el~~l~----~~~~Le~~~~~LE~E~~~l~e~lee~e~~le----~~e~~l~rle~e~~~---L~~~ 549 (964)
+-+||.+|-+|++.+..|. ....+....+.||-+...+..++++...-.. .++..|..++.|..+ |+++
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE 251 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6788899999999998887 5678888889999999999999988664222 344456666665554 7777
Q ss_pred HHHHH
Q psy3622 550 IEDQE 554 (964)
Q Consensus 550 ~e~~~ 554 (964)
++...
T Consensus 252 L~q~~ 256 (772)
T KOG0999|consen 252 LSQYR 256 (772)
T ss_pred HHHhc
Confidence 66533
No 128
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.00 E-value=3.8 Score=42.44 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH-HHHHHHHHHHhHHHHHHHHHHHH
Q psy3622 460 IQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKKCKEAL 522 (964)
Q Consensus 460 ~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~-~~~~Le~~~~~LE~E~~~l~e~l 522 (964)
+..+...+..|...+..+...+.+..+.+..++.++..|. .+.-++.+++.|+.|...|-+-+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555555544444 44555555556666655544433
No 129
>KOG2129|consensus
Probab=89.90 E-value=39 Score=38.13 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=23.1
Q ss_pred chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q psy3622 641 FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQL 675 (964)
Q Consensus 641 ~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~ 675 (964)
.+..+..+|+-+..++.++.-.+..++..+.-+..
T Consensus 51 rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 51 RVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 45566677777777777777777776655554433
No 130
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.76 E-value=22 Score=35.10 Aligned_cols=89 Identities=24% Similarity=0.368 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 764 EHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLM 843 (964)
Q Consensus 764 e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~ 843 (964)
.+..+..++..+.....++......++.+...+......++..+..+..-+...++.++.+...+.....+..-+.+.-.
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333334444444444444444444444444444444444444444444444444444444445555555
Q ss_pred HHHHHHHHH
Q psy3622 844 EHVTNLLAQ 852 (964)
Q Consensus 844 ~q~~~L~~q 852 (964)
.++..|..+
T Consensus 140 ~E~~kLk~r 148 (151)
T PF11559_consen 140 REIEKLKER 148 (151)
T ss_pred HHHHHHHHH
Confidence 555555543
No 131
>KOG0963|consensus
Probab=89.58 E-value=53 Score=39.27 Aligned_cols=84 Identities=21% Similarity=0.358 Sum_probs=41.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhh
Q psy3622 506 TKLANCEKEIKKCKEALESKA--------ESLDKLTNKLESMEKEHVSLTKQIEDQENELK-KYNDLKREMDELDSKYQV 576 (964)
Q Consensus 506 ~~~~~LE~E~~~l~e~lee~e--------~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~-~l~elE~e~~~L~~~~~~ 576 (964)
.....+|.|+..++.++...- ...+.....|-..+.++.+|...|+.+..... .+...-.++..+..++.-
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544322 12334444555666677777776666655433 223333444444444444
Q ss_pred hHhhHHHHHhHhh
Q psy3622 577 DKNTLSVLQNDLV 589 (964)
Q Consensus 577 ~~~tl~~Lq~~l~ 589 (964)
....+.++...|.
T Consensus 329 ~~~~leel~~kL~ 341 (629)
T KOG0963|consen 329 KISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHh
Confidence 4445555555443
No 132
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.47 E-value=29 Score=36.15 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 700 EQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQA 746 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~ 746 (964)
.....++..+..+.+.+...+.+++....++..+|..+..-+..+..
T Consensus 65 ~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~ 111 (207)
T PF05010_consen 65 ELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK 111 (207)
T ss_pred HhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33456666777777777777777777777777777666665555543
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.09 E-value=48 Score=38.12 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Q psy3622 373 AKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEI 446 (964)
Q Consensus 373 ~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~ 446 (964)
.++.....++..+.+.|...... .......+..++++...+..++-....++...+..+.+++.....+..+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~-~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQ-RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 46677777777777777765554 44444556666777777777777777777777777777766666655444
No 134
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=88.47 E-value=13 Score=32.34 Aligned_cols=71 Identities=13% Similarity=0.238 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 778 ANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTN 848 (964)
Q Consensus 778 ~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~ 848 (964)
-.|-++.+|..+..+....+.....++..++.--.|++.++..+-.|.....++..++|+++..|..+++.
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34666777777777777777777777777887778888888888888888888988899999888887754
No 135
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.04 E-value=26 Score=37.40 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy3622 751 LKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN 816 (964)
Q Consensus 751 L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~ 816 (964)
.+.+......+..++..|-..++++...++++...+..=.....-|.+.+...+.++..++.++..
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr 120 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKR 120 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555555555554444444433333344444444444444444444443
No 136
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.00 E-value=37 Score=35.39 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 784 ADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ---LSKYQNK-LEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 784 ~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~---~~~L~~~-LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
..+..+..+...|+.+...|.-.+..++.|.+.+..++...-.. -+.+.+- |+-....|...++.-..|..+.+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555444333321111 1122222 555666666666666666655555
No 137
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.63 E-value=53 Score=36.83 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 724 KNENKTVKEQYSQLKVSYESLQAEMEQLKFESH 756 (964)
Q Consensus 724 e~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~ 756 (964)
-....++..++..|-.++..|.++..+|..+.+
T Consensus 143 t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k 175 (499)
T COG4372 143 TKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQK 175 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444433333
No 138
>KOG0995|consensus
Probab=87.59 E-value=68 Score=38.06 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy3622 375 ALRLELENKRLLSTIESLHEN 395 (964)
Q Consensus 375 ~~kLe~E~k~L~~~ie~l~~~ 395 (964)
..++++.....-.+|+.++..
T Consensus 223 k~~l~~~~~~i~~~ie~l~~~ 243 (581)
T KOG0995|consen 223 KHRLEKYFTSIANEIEDLKKT 243 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666554
No 139
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=87.38 E-value=74 Score=38.25 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=23.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 811 EGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTH 859 (964)
Q Consensus 811 e~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~ 859 (964)
..++..+..++..+.++...+..++..+..++..++..+...+......
T Consensus 287 ~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 287 QEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 3333333333334444444444445556666666666666555444433
No 140
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=87.35 E-value=9 Score=42.83 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTEL 810 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~l 810 (964)
.++..++..+..+...+..++..++.+...+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 141
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.23 E-value=5 Score=41.56 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy3622 839 RRKLMEHVTNLLAQYHELLTHSLEDK 864 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll~~~le~k 864 (964)
+-.+...+..|..+|..|+++-|.-+
T Consensus 160 ~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666555533
No 142
>KOG0964|consensus
Probab=86.90 E-value=97 Score=39.09 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=28.9
Q ss_pred chhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHH
Q psy3622 99 DVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHA 150 (964)
Q Consensus 99 d~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~ 150 (964)
.+..+|--|| .+=..||.=|.|+-|--.+++.-+.- |+++-|..
T Consensus 143 kI~~La~akD-----~eRL~LLkeVaGtrvYeerreeSlki---m~ET~qK~ 186 (1200)
T KOG0964|consen 143 KINELANAKD-----SERLELLKEVAGTRVYEERREESLKI---MEETKQKR 186 (1200)
T ss_pred hhHHhhcCCc-----HHHHHHHHHhcccchhHHhHHHHHHH---HHHHhhhH
Confidence 4556777777 45567888888988887777765443 34444443
No 143
>KOG1853|consensus
Probab=86.82 E-value=45 Score=35.13 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3622 727 NKTVKEQYSQLKVSYESLQAEMEQLKFESH-SLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTL 805 (964)
Q Consensus 727 ~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~-~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~ 805 (964)
+-.++.+.+.|+.+...|..+.+.++.-+. +......+...|.+++.......+.+++-.+.|...+..|......---
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh
Confidence 333444444555555555555444433111 1122334455667777666666677777777776666666655555556
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q psy3622 806 SLTELEGELANRDDAISALSVQLS 829 (964)
Q Consensus 806 ~l~~le~El~~~~e~~~~L~~~~~ 829 (964)
.+.+++..|+.+-+++.-|..++-
T Consensus 134 sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677777777777777777766653
No 144
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.79 E-value=42 Score=34.75 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKF 753 (964)
Q Consensus 702 l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~ 753 (964)
-.+++..++..|. ...+.|....+...+.++.++..+.....++..+..
T Consensus 55 ~e~~Lpqll~~h~---eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 55 TEAELPQLLQRHN---EEVRVLRERLRKSQEQERELERKLKDKDEELLKTKD 103 (194)
T ss_pred hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443332 233344444444444444555555544444443333
No 145
>KOG4593|consensus
Probab=86.42 E-value=87 Score=38.07 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 535 KLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574 (964)
Q Consensus 535 ~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~ 574 (964)
.+.-+..|+..|..++..+..+..++-.||-++.++..++
T Consensus 276 tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL 315 (716)
T KOG4593|consen 276 TVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKL 315 (716)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444555555555555555555666666666655554
No 146
>KOG0804|consensus
Probab=86.08 E-value=51 Score=37.81 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 829 SKYQNKLEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 829 ~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
.++...+.+.+..+..+|+.|..|.+.|+.
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 333333445566666666666666666654
No 147
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.72 E-value=47 Score=35.79 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=5.9
Q ss_pred hhHHHHhhhHHHHHH
Q psy3622 651 KLEVDLKTSQSQISS 665 (964)
Q Consensus 651 ~Lq~e~~~L~sq~~s 665 (964)
.|+.++..|.+.+..
T Consensus 186 ~lq~QL~~L~~EL~~ 200 (246)
T PF00769_consen 186 RLQEQLKELKSELEQ 200 (246)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 148
>KOG0963|consensus
Probab=85.50 E-value=91 Score=37.43 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 306 INEIALERDANAEKLQQLIEENT 328 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~ee~~ 328 (964)
+..++.|+|.+-.+-..-.....
T Consensus 68 lK~yQ~EiD~LtkRsk~aE~afl 90 (629)
T KOG0963|consen 68 LKSYQSEIDNLTKRSKFAEAAFL 90 (629)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777888877666655444333
No 149
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.29 E-value=58 Score=35.05 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=6.8
Q ss_pred HHHhhhHHHHHHHHHHHH
Q psy3622 436 ESKFTKLETEIRKINESY 453 (964)
Q Consensus 436 E~~~k~l~ee~~~lq~~~ 453 (964)
+.+...+.++....+..+
T Consensus 11 e~rL~q~eee~~~a~~~L 28 (246)
T PF00769_consen 11 EERLRQMEEEMRRAQEAL 28 (246)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 150
>KOG1003|consensus
Probab=83.90 E-value=54 Score=33.49 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=14.2
Q ss_pred hhHhhHHHHHhHhhHhhhhhhHHHhHHHH
Q psy3622 576 VDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604 (964)
Q Consensus 576 ~~~~tl~~Lq~~l~~Ek~k~~~L~~ele~ 604 (964)
.+.++++.|...+...+.+...+...|+.
T Consensus 169 kLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 169 KLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45555566665555554443334444433
No 151
>KOG0994|consensus
Probab=83.78 E-value=1.4e+02 Score=38.31 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 874 FSDKLNNLHRQKEKLEEKIMEHY 896 (964)
Q Consensus 874 ~~~k~~~l~~q~e~l~~~l~e~y 896 (964)
+...+..|+...+.+...|.+.-
T Consensus 1729 ~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1729 KAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhh
Confidence 34455566666666666665543
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.14 E-value=50 Score=32.56 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEAL 522 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~l 522 (964)
......+++-+.|+..|++.+
T Consensus 129 tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 129 TQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666677777776654
No 153
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.85 E-value=27 Score=39.02 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEIKVLKS 718 (964)
Q Consensus 702 l~~E~E~l~~e~e~Lk~ 718 (964)
+..+++.+..+.+.-..
T Consensus 14 l~~~~~~~~~E~~~Y~~ 30 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQE 30 (314)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 154
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.77 E-value=24 Score=30.22 Aligned_cols=13 Identities=8% Similarity=0.159 Sum_probs=5.2
Q ss_pred HHHHHhHHHHHHH
Q psy3622 811 EGELANRDDAISA 823 (964)
Q Consensus 811 e~El~~~~e~~~~ 823 (964)
..+.+.|..++..
T Consensus 52 ~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 52 KQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 155
>KOG4360|consensus
Probab=82.61 E-value=1.1e+02 Score=35.92 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3622 761 LRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISAL 824 (964)
Q Consensus 761 l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L 824 (964)
+..++-.++.+..-+..+++.+...+.......+.+..+++.++..-.+..+.+.+.++.++.|
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444445555555555555555555555555555555555555555555555444444444333
No 156
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.48 E-value=22 Score=37.12 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 874 FSDKLNNLHRQKEKLEEKIMEHY 896 (964)
Q Consensus 874 ~~~k~~~l~~q~e~l~~~l~e~y 896 (964)
...++..++.+++.+...+.=+|
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~w 173 (206)
T PRK10884 151 AQKKVDAANLQLDDKQRTIIMQW 173 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555544333
No 157
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=82.41 E-value=1.4 Score=38.96 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=40.6
Q ss_pred CCCCCcc-cccccHHHHHHHHHhhCCCCCCCCC-C-CCCcchHHHhhhHHHHHHHHHHHHHHHhhhh
Q psy3622 30 PDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSV-V-PSLRNASVRIKNFNTIVKNIKSLYEEELCQI 93 (964)
Q Consensus 30 ~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~-~-~~~~~~~~~~~Nl~~i~~~i~~yy~e~l~~~ 93 (964)
..++.++ .||+||++|..+++..-|...+-.- . ++.-.......|+..+. .|..+.++..
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~----~~c~~~l~~~ 72 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLN----SFCQSHLGFS 72 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHH----HHHHHHcCCC
Confidence 4567788 8999999999999999998876532 2 12223556777887765 4444444433
No 158
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.26 E-value=84 Score=33.89 Aligned_cols=96 Identities=16% Similarity=0.138 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHhhhHHHHHHHHH
Q psy3622 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTE-YESKFTKLETEIRKIN 450 (964)
Q Consensus 372 ~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~-lE~~~k~l~ee~~~lq 450 (964)
.++..-|..-|..|.+.|.+....+.. ....|-.+-+.+.+-++.+...... ++.....|.+|..+..
T Consensus 12 ~~h~~~L~~~N~~L~~~IqdtE~st~~-----------~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 12 KKHEDFLTKLNKELIKEIQDTEDSTAL-----------KVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEE 80 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHhHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777776554111 1111112223333333333322221 3344444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 451 ESYQNLELQIQVRNDELDNMNREKQKLE 478 (964)
Q Consensus 451 ~~~e~~~~~~~~le~~~~~l~~e~~~l~ 478 (964)
..+..+..++..+...+.....+..-|.
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555544443
No 159
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=81.12 E-value=1.4e+02 Score=36.36 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhH
Q psy3622 767 KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANR 817 (964)
Q Consensus 767 ~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~ 817 (964)
.+...+..+....+.+...+..+......|+..-...+..+..+...+...
T Consensus 376 ~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 376 EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444443
No 160
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.92 E-value=1.2e+02 Score=35.25 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy3622 657 KTSQSQISSLTSQHTALQLANS 678 (964)
Q Consensus 657 ~~L~sq~~sl~~q~~~Lq~~~~ 678 (964)
..+..+...+..+...++....
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAEVA 98 (423)
T ss_pred chhhhHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544443
No 161
>KOG1899|consensus
Probab=80.68 E-value=1.4e+02 Score=35.88 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHH
Q psy3622 839 RRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLH 882 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~ 882 (964)
.-+...+.+.|+.-...++. +-++++.+.++++.|.+......
T Consensus 269 ~e~~~~rd~~lk~a~eslm~-ane~kdr~ie~lr~~ln~y~k~~ 311 (861)
T KOG1899|consen 269 GEHKSLRDNTLKNALESLMR-ANEQKDRFIESLRNYLNNYDKNA 311 (861)
T ss_pred ccchhhHHHHHHHHHHHHHh-hchhhhhHHHHHHHHhhhhhhhh
Confidence 33333444444443334333 44678888888988876655443
No 162
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=80.38 E-value=36 Score=29.43 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ 827 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~ 827 (964)
++++.....|..+...+++....|.....++..+.+.|++++..|-.+
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444445555555555555566666666666666555433
No 163
>PF15294 Leu_zip: Leucine zipper
Probab=79.84 E-value=91 Score=33.98 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh-----hhhhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Q psy3622 380 LENKRLLSTIESLHENAFYESG-----ERILELEKEKKK-----LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI 449 (964)
Q Consensus 380 ~E~k~L~~~ie~l~~~~~~e~~-----~k~~~LEkek~~-----L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~l 449 (964)
-||+.|...++....+...-.. ..-.+|.-.+.. +..+|.+|+.+.+.++.....++..+-...+++.++
T Consensus 86 lEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 86 LENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777776554221110 001122222222 566777777777777777777777777777777777
Q ss_pred HHHHHHH
Q psy3622 450 NESYQNL 456 (964)
Q Consensus 450 q~~~e~~ 456 (964)
+..+.++
T Consensus 166 ~~~L~~l 172 (278)
T PF15294_consen 166 EAQLKEL 172 (278)
T ss_pred HHHHHHH
Confidence 7665433
No 164
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.61 E-value=1.1e+02 Score=34.06 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 720 LRDVKNENKTVKEQYSQLKVSYESLQAEMEQ 750 (964)
Q Consensus 720 ~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~ 750 (964)
.+.++.....++++|++-.-.+.+|..++.+
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~ 109 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSA 109 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 3444555555555555554444555544443
No 165
>KOG1899|consensus
Probab=79.39 E-value=1.5e+02 Score=35.57 Aligned_cols=152 Identities=21% Similarity=0.226 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHH
Q psy3622 369 SSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448 (964)
Q Consensus 369 ~~~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~ 448 (964)
+..+.|+.+|+..+..|.-+..-|.++ +++.+.|+..||--....+.++..-..-+...--.+..+|.+.-.+.-+...
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteq-VeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSe 185 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQ-VEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSE 185 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHH-HHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHH
Confidence 345668888888888887777777776 6666666666664222222222111111111111112333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 449 INESYQNLELQIQVRNDELDNMNREKQKLEWK-NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAE 527 (964)
Q Consensus 449 lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~-~eelEr~~~~l~~el~~l~~~~~Le~~~~~LE~E~~~l~e~lee~e~ 527 (964)
|.-.+..++++-++-+++.+......+.+... ..++.. ++...+.+....-.+..-|++++.++.+
T Consensus 186 LKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~-------------erlqye~klkstk~e~a~L~Eq~~eK~~ 252 (861)
T KOG1899|consen 186 LKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQ-------------ERLQYETKLKSTKGEMAPLREQRSEKND 252 (861)
T ss_pred hHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHH-------------HHHHHHhhcccccchhhhHHHHHhhhhh
Confidence 33333333333333333333333333322211 011110 2234444555555667888888888877
Q ss_pred hHHHHHH
Q psy3622 528 SLDKLTN 534 (964)
Q Consensus 528 ~le~~e~ 534 (964)
+...+..
T Consensus 253 e~~rl~~ 259 (861)
T KOG1899|consen 253 EEMRLLR 259 (861)
T ss_pred HHHHHHH
Confidence 6554444
No 166
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=79.37 E-value=1.1e+02 Score=34.13 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 704 MEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLK 783 (964)
Q Consensus 704 ~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~ 783 (964)
.-|.....+.+.+-...+.|+.+...+..++..-..-+- .+..+......++..+..+.+.+.
T Consensus 237 e~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~-----------------~m~eer~~~~~~~~~~~~k~~kLe 299 (309)
T PF09728_consen 237 EVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALI-----------------EMAEERQKLEKELEKLKKKIEKLE 299 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666677666666555543322222 233334445555555555666666
Q ss_pred HHHHHHHH
Q psy3622 784 ADFRALQE 791 (964)
Q Consensus 784 ~~~~~Lq~ 791 (964)
..++.||.
T Consensus 300 ~LcRaLQ~ 307 (309)
T PF09728_consen 300 KLCRALQA 307 (309)
T ss_pred HHHHHHhh
Confidence 66666664
No 167
>KOG0982|consensus
Probab=79.10 E-value=1.2e+02 Score=34.54 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHhhhHHH--HHH-H
Q psy3622 376 LRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ----CTEYESKFTKLET--EIR-K 448 (964)
Q Consensus 376 ~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~----~~~lE~~~k~l~e--e~~-~ 448 (964)
..++.--..|++.+.++... ....+..-..+..++-.|.+...-|........-. ..+-++..+.+.- ++. .
T Consensus 218 ~di~~kv~flerkv~eledd-~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas 296 (502)
T KOG0982|consen 218 IDIERKVRFLERKVQELEDD-QNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS 296 (502)
T ss_pred hhHHHHHHHHHHHHHHhhcc-hhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666677776664 33344445556666666665444333322221111 1111111111110 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH
Q psy3622 449 INESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE 499 (964)
Q Consensus 449 lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~ 499 (964)
++ .+...-.++.++.++..|+...-++....+.|..+.+.....++.+.
T Consensus 297 le--~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 297 LE--KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 11 11112223456666777777777777777666666555555555554
No 168
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.06 E-value=1.3e+02 Score=34.78 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=5.6
Q ss_pred HhhhHHHHHHHHHHH
Q psy3622 656 LKTSQSQISSLTSQH 670 (964)
Q Consensus 656 ~~~L~sq~~sl~~q~ 670 (964)
+..+..+...+.++.
T Consensus 83 l~~l~~~~~~l~a~~ 97 (423)
T TIGR01843 83 AAELESQVLRLEAEV 97 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 169
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.94 E-value=1.3e+02 Score=34.73 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=20.7
Q ss_pred hchhhchhHhhHHhhhhHHHHhhhHHHHHHHHHHHHH
Q psy3622 636 LGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTA 672 (964)
Q Consensus 636 i~~e~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~ 672 (964)
|.+++++..+..-++.++..+..+.....++......
T Consensus 483 i~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~ 519 (622)
T COG5185 483 ITLEEDIKNLKHDINELTQILEKLELELSEANSKFEL 519 (622)
T ss_pred eeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666655555444333
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.75 E-value=77 Score=39.69 Aligned_cols=55 Identities=25% Similarity=0.400 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 839 RRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIM 893 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~ 893 (964)
...|...++.+.+.....+...-.++..|..|++.+.+++..+...++.+..++.
T Consensus 609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 609 QEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665555445555566778888888888888888888888877774
No 171
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.94 E-value=40 Score=28.19 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSV 826 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~ 826 (964)
++++.....|..+...++.....|.+...++..+-..|++++..|-.
T Consensus 28 eELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 28 EELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444455555555555555555556666666666666655543
No 172
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.93 E-value=84 Score=31.90 Aligned_cols=29 Identities=31% Similarity=0.264 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 691 DQMTMTKLHEQLNMEYESVVKEIKVLKST 719 (964)
Q Consensus 691 ~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~ 719 (964)
|+.++..-+..+...+++-..++..|+..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555554444444444
No 173
>KOG4360|consensus
Probab=77.79 E-value=1.4e+02 Score=35.08 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=12.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHHHH
Q psy3622 507 KLANCEKEIKKCKEALESKAESLDKL 532 (964)
Q Consensus 507 ~~~~LE~E~~~l~e~lee~e~~le~~ 532 (964)
.-+.++.|...+++.+.|+...+.+.
T Consensus 269 a~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 269 AQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554444444433
No 174
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.79 E-value=1.4e+02 Score=34.47 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=10.4
Q ss_pred CCCCCcccc--cCCCCCCCCC
Q psy3622 931 RKSWHEDSL--RKDRGTDSDT 949 (964)
Q Consensus 931 ~~~~~~~~~--~~~~~~~~~~ 949 (964)
+-+||-..+ +.-|+.+.++
T Consensus 298 ~l~~PV~G~il~rFG~~~~gg 318 (420)
T COG4942 298 QLAWPVTGRILRRFGQADGGG 318 (420)
T ss_pred CcCCCCCCcHHHHhcccCCCC
Confidence 457887765 3335554443
No 175
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.30 E-value=7.7 Score=29.92 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTL 805 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~ 805 (964)
+..+|+-|....+.+...|..|..+...|+.++..++.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555555566666666666666666655555543
No 176
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.19 E-value=1.2e+02 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.262 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3622 449 INESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEIN 491 (964)
Q Consensus 449 lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr~~~~l 491 (964)
+....+....++-++...+..+..+.-.++..+.+++.....|
T Consensus 205 ~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l 247 (294)
T COG1340 205 LRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKAL 247 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444433333
No 177
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.06 E-value=48 Score=30.34 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 769 KDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLE 836 (964)
Q Consensus 769 ~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LE 836 (964)
-.+|..|+.+..-++.-.-.-++....|...++.....+..++.|++.+..+++.|.-.+..|+.+++
T Consensus 4 a~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 4 AQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555566666666666666666666666665555555555554444433
No 178
>KOG0804|consensus
Probab=76.94 E-value=1e+02 Score=35.51 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 785 DFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQYHELL 857 (964)
Q Consensus 785 ~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~~~Ll 857 (964)
+..+....+..+-.+..+++...+.++.+......+++.++.++.++.++ +.+.+..|..........+.++.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555555566666666666666666666666777777777666 33345555444444444444333
No 179
>KOG0978|consensus
Probab=76.23 E-value=2e+02 Score=35.47 Aligned_cols=20 Identities=5% Similarity=0.215 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3622 306 INEIALERDANAEKLQQLIE 325 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~e 325 (964)
++.+..+.+.+.++...+..
T Consensus 99 le~~~~d~eki~~~~~~l~~ 118 (698)
T KOG0978|consen 99 LEDLQADLEKIRRRSNKLNK 118 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666677666666665554
No 180
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.96 E-value=46 Score=34.81 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 734 YSQLKVSYESLQAE 747 (964)
Q Consensus 734 ~~~Le~~~~~L~~e 747 (964)
+..++.++..++.+
T Consensus 95 lp~le~el~~l~~~ 108 (206)
T PRK10884 95 VPDLENQVKTLTDK 108 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=75.81 E-value=1.8e+02 Score=34.70 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3622 661 SQISSLTSQHTALQLANSQLIL 682 (964)
Q Consensus 661 sq~~sl~~q~~~Lq~~~~~le~ 682 (964)
.-..++..+...++......+.
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~ 182 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAEN 182 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666665554433
No 182
>KOG2046|consensus
Probab=75.67 E-value=6.2 Score=40.14 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=42.0
Q ss_pred HHhhhhhHHHHHhhcCCCCCC-CCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHH
Q psy3622 12 EEFLKGPLVTWLLSCLSNPDR-LSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSL 85 (964)
Q Consensus 12 ~~~~~~~L~~W~~tf~~~~~~-~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~y 85 (964)
+.-+..-|+.||......+.+ -.+|. -|-||++|..+++.+.| ....-.+.+..+|.. ..|+...+++...|
T Consensus 23 ~~~~~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p-~~~~~~~~s~~~f~q-mEnIs~Fi~a~~~y 96 (193)
T KOG2046|consen 23 DDELEKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYP-GVVKKINESKMAFVQ-MENISNFIKAAKKY 96 (193)
T ss_pred CHHHHHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCc-CcccccccccccHHH-HHHHHHHHHHHHhc
Confidence 445566789999984211221 23444 57899999999999999 222222233334442 34555555555554
No 183
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=75.58 E-value=2.1e+02 Score=35.37 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=8.9
Q ss_pred CCCCCCCccccchh
Q psy3622 943 RGTDSDTSLEDTLE 956 (964)
Q Consensus 943 ~~~~~~~~~~~~~~ 956 (964)
.|+||++-.||..-
T Consensus 665 ~~ses~Tlied~~~ 678 (861)
T PF15254_consen 665 TESESMTLIEDECN 678 (861)
T ss_pred ccccccceeccCcC
Confidence 66777766666544
No 184
>KOG1937|consensus
Probab=74.05 E-value=1.7e+02 Score=33.68 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=30.4
Q ss_pred hHHHhhhhhHHHHHhhcCCCCCCCCcccccccHH---HHHHHHHhhCCCCCCCC
Q psy3622 10 EIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGI---YIHEVYLLIDPEPVHQS 60 (964)
Q Consensus 10 ~~~~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~---~l~~vl~~iDp~~~~~~ 60 (964)
+.|.|+-++|..-=.+|++ ..++.+++--. |...+|..|||+--...
T Consensus 3 Eadriimh~lrq~g~sipp----~~~lseFTteqvveavvrcL~~Idps~q~~~ 52 (521)
T KOG1937|consen 3 EADRIIMHALRQLGCSIPP----FEDLSEFTTEQVVEAVVRCLWKIDPSKQTIS 52 (521)
T ss_pred HHHHHHHHHHHHcCCCCCC----chhHhhcCHHHHHHHHHHHHHhcCccccccc
Confidence 4566766666665444432 55666666654 56788999999875543
No 185
>PRK11281 hypothetical protein; Provisional
Probab=73.60 E-value=3.1e+02 Score=36.30 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 844 EHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIM 893 (964)
Q Consensus 844 ~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~ 893 (964)
..+..+....++|+.+-...-+.+-.+.-.++.....+....+.+...+.
T Consensus 403 ~~l~~ll~~r~~LL~~l~~~~~~~l~~~~~l~~~q~Ql~~~~~~l~~~L~ 452 (1113)
T PRK11281 403 DALLQLLDERRELLDQLNKQLNNQLNLAINLQLNQQQLLSVSDSLQSTLT 452 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777776666666665555555444555555555544443
No 186
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.51 E-value=37 Score=35.07 Aligned_cols=54 Identities=31% Similarity=0.393 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 802 KLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTH 859 (964)
Q Consensus 802 ~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~ 859 (964)
.|-..+.+++++++..++++..|..+.+. |++..+.|...+..|..+..+|...
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~----LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSR----LEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhchhHHHHHHHHHHHhccc
Confidence 33344444555555555555555555433 4555666666677777666666553
No 187
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=73.21 E-value=77 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=30.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSL 546 (964)
Q Consensus 501 ~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L 546 (964)
.....+.+..|+..+..+...++....+..+++..+.+.++...-+
T Consensus 53 ~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~l 98 (107)
T PF09304_consen 53 NASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAIL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3555666666777777777777776666666666666666655544
No 188
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.87 E-value=1.2e+02 Score=32.69 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy3622 766 SKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ 827 (964)
Q Consensus 766 ~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~ 827 (964)
...+.+.+.+..+...+..+|+.+..+.+.++...+.++..+...+.++..++.++..+...
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~ 99 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEET 99 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777777777777777777777777777666665555444433
No 189
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.83 E-value=42 Score=34.69 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRD 818 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~ 818 (964)
+++..+|...+...+.|.++.+.|...+..+.+++..++
T Consensus 159 eele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 159 EELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 333333444444444444444444444444444444333
No 190
>KOG0018|consensus
Probab=72.32 E-value=2.9e+02 Score=35.52 Aligned_cols=248 Identities=15% Similarity=0.183 Sum_probs=110.4
Q ss_pred chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 641 FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA------NHNELLQDQMTMTKLHEQLNMEYESVVKEIK 714 (964)
Q Consensus 641 ~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e------~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e 714 (964)
....|...-..|..++..++. ... ....+....+.++.. ...++.++.......-....++++..-..+.
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 444555555555555555555 111 334444444444444 2233333333332222334445554444555
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH-H-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHH
Q psy3622 715 VLKSTLRDVKNENKTVKEQYSQLKVSYES-L-----------QAEMEQLKFESHSLSNLRAEHSKLKDDF-----RILFT 777 (964)
Q Consensus 715 ~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~-L-----------~~e~~~L~~e~~~~~~l~~e~~~l~~e~-----~~l~~ 777 (964)
++...+.+.+...++|+.+.+..+.++-. . +.... .....+....+..+...+.-++ .+...
T Consensus 729 ~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~~~d~~~ 807 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEKQKDTQR 807 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhheecccHHH
Confidence 66667777777777777766665444322 0 10000 1111111222222222222221 12333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 778 ANEKLKADFRALQEEHKGNHMEKRKLTLSL--------------TELEGELANRDDAISALSVQLSKYQNKLEDDRRKLM 843 (964)
Q Consensus 778 ~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l--------------~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~ 843 (964)
.+++|......++.+.+++......+-..+ ...+.+++.++.....+..++++ |+.+...+.
T Consensus 808 ~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tk----l~~~i~~~e 883 (1141)
T KOG0018|consen 808 RVERWERSVEDLEKEIEGLKKDEEAAEKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTK----LDKEITSIE 883 (1141)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhhhh
Confidence 334444444444444444433333222222 22333444444444444444444 455566666
Q ss_pred HHHHHHHHHHHHHHhhh-hhhhh------hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3622 844 EHVTNLLAQYHELLTHS-LEDKD------HYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRK 898 (964)
Q Consensus 844 ~q~~~L~~q~~~Ll~~~-le~k~------~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~ 898 (964)
+.+..+..+.++++... +++.. .+..-..-.......|-+.+. |..+|.+....
T Consensus 884 s~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~ 944 (1141)
T KOG0018|consen 884 SKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSV 944 (1141)
T ss_pred hHHHHHHHHHHHHHHHhhhccccccccCCCccccceecccccccccHHHH-HHHHHHHHHHH
Confidence 67777777777776532 22211 111111112344556667777 77777665544
No 191
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.90 E-value=1.3e+02 Score=31.38 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q psy3622 802 KLTLSLTELEGELANRDDAISAL 824 (964)
Q Consensus 802 ~lk~~l~~le~El~~~~e~~~~L 824 (964)
.|+..+.+....+..+..+++.|
T Consensus 115 ~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 115 TLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444333333333
No 192
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=71.42 E-value=48 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3622 750 QLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHM 798 (964)
Q Consensus 750 ~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~ 798 (964)
+|+.|++..+.+..+..+.+..+-.+...........+.|..+...|+.
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~ 53 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKK 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555666665555555544444444444444444444333333
No 193
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=71.24 E-value=1.6e+02 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=22.9
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3622 866 HYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRK 898 (964)
Q Consensus 866 ~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~ 898 (964)
.|-++..++...+..|+++.+.|....++--..
T Consensus 197 ~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~ 229 (258)
T PF15397_consen 197 QFREEIDELEEEIPQLRAEVEQLQAQAQDPREV 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence 444555667788888888888888888754443
No 194
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=69.35 E-value=1.9e+02 Score=32.13 Aligned_cols=59 Identities=27% Similarity=0.304 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3622 272 GKALESEIQRYKDKLTDLE-YYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNL 330 (964)
Q Consensus 272 ~~~le~~~~~lk~kl~~l~-~~k~~~~el~e~~~~l~~l~~E~d~~~e~~eel~ee~~~L 330 (964)
...+-.+|..||.++++++ .+...-.++++++..+..+...++.++..+..|.++..+.
T Consensus 107 k~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 107 KSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666778888887774 3333334445555545555555555555555555554443
No 195
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.67 E-value=67 Score=38.40 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHhHh
Q psy3622 559 KYNDLKREMDELDSKYQVDKNTLSVLQNDL 588 (964)
Q Consensus 559 ~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l 588 (964)
++..+++.+..|...+....+.++.|...|
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655666666666554
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.23 E-value=1.1e+02 Score=36.85 Aligned_cols=16 Identities=50% Similarity=0.715 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhcc
Q psy3622 883 RQKEKLEEKIMEHYRK 898 (964)
Q Consensus 883 ~q~e~l~~~l~e~y~~ 898 (964)
++...-+.++.++|+.
T Consensus 632 ~~k~~~i~riieEYR~ 647 (652)
T COG2433 632 RQKEEDILRIIEEYRR 647 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555566666653
No 197
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.86 E-value=3.9e+02 Score=34.76 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy3622 80 KNIKSLY 86 (964)
Q Consensus 80 ~~i~~yy 86 (964)
+++.+|.
T Consensus 9 ~Nf~S~~ 15 (908)
T COG0419 9 KNFRSFK 15 (908)
T ss_pred ccccccc
Confidence 3344444
No 198
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=66.53 E-value=2.2e+02 Score=32.53 Aligned_cols=113 Identities=11% Similarity=0.203 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTH 859 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~ 859 (964)
..|+..+.+++.....+.......+.++..+..++...-+++..-+-.++.--..+=.+.+..+.++.....+++.+-..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45555555665555555555555666666666555543333322222211100001122444444444444444433332
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q psy3622 860 SLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCS 903 (964)
Q Consensus 860 ~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~ 903 (964)
..+ ....++.+..+++.....|-+.-....++.
T Consensus 296 V~~-----------~t~~L~~IseeLe~vK~emeerg~~mtD~s 328 (359)
T PF10498_consen 296 VSE-----------RTRELAEISEELEQVKQEMEERGSSMTDGS 328 (359)
T ss_pred HHH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 222 455566677777777777777666655554
No 199
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.71 E-value=1.5e+02 Score=31.97 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEH--KGNHMEKRKLTLSLTELEGELA 815 (964)
Q Consensus 780 e~l~~~~~~Lq~e~--~~L~~e~~~lk~~l~~le~El~ 815 (964)
|++.++.+...+++ ++.+.++++|+--+..+..-|.
T Consensus 104 DWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 104 DWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56666666554443 4555555555555544444433
No 200
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=65.36 E-value=2.5e+02 Score=32.06 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEI 713 (964)
Q Consensus 702 l~~E~E~l~~e~ 713 (964)
++.|+|++..++
T Consensus 196 WklEvERV~PqL 207 (359)
T PF10498_consen 196 WKLEVERVLPQL 207 (359)
T ss_pred HHHHHHHHhhhh
Confidence 556666665444
No 201
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.21 E-value=2.1e+02 Score=31.07 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy3622 404 ILELEKEKKKLSLQVEDLEETK 425 (964)
Q Consensus 404 ~~~LEkek~~L~~eie~l~~~l 425 (964)
+..+++....|..+++.|....
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~ 68 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKA 68 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.35 E-value=2.8e+02 Score=32.24 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=25.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q psy3622 400 SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKF 439 (964)
Q Consensus 400 ~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~ 439 (964)
...+...|++....+..-+..++..+..........-+++
T Consensus 478 e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~ 517 (622)
T COG5185 478 EENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKF 517 (622)
T ss_pred HhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777777777766665544444444
No 203
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.30 E-value=1.7e+02 Score=29.83 Aligned_cols=13 Identities=31% Similarity=0.447 Sum_probs=4.7
Q ss_pred HHhhhHHHHHHHH
Q psy3622 655 DLKTSQSQISSLT 667 (964)
Q Consensus 655 e~~~L~sq~~sl~ 667 (964)
++...+.+...+.
T Consensus 82 e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 82 ELSELQQQLQQLQ 94 (191)
T ss_pred hHHhHHHHHHHHH
Confidence 3333333333333
No 204
>KOG0046|consensus
Probab=63.52 E-value=12 Score=43.43 Aligned_cols=79 Identities=20% Similarity=0.415 Sum_probs=55.4
Q ss_pred hhhHHHHHhhcC---CCCCCCCcccc--cccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHHHHHHh
Q psy3622 16 KGPLVTWLLSCL---SNPDRLSDYED--LADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEEL 90 (964)
Q Consensus 16 ~~~L~~W~~tf~---~~~~~~~~~~d--L~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~yy~e~l 90 (964)
.+.+|.|+|.-. .....+.||-| ++||+++.+++.-|-|.+.+-.+.++.++-..+..|-+-++.--+. +
T Consensus 511 D~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~LV~~G~t~EdK~~NAkYaIS~ARK-----i 585 (627)
T KOG0046|consen 511 DSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSLVTSGNTDEEKLLNAKYAISVARK-----L 585 (627)
T ss_pred HHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhhccCCCChhhhhhcchhhHhHHHh-----h
Confidence 456799999542 23456777776 8999999999999999998888765433345677777755432222 5
Q ss_pred hhhcccCCc
Q psy3622 91 CQIVLVLPD 99 (964)
Q Consensus 91 ~~~~~~~pd 99 (964)
|-.|..+|.
T Consensus 586 Ga~IyaLPE 594 (627)
T KOG0046|consen 586 GASIYALPE 594 (627)
T ss_pred CceEEeccH
Confidence 666666775
No 205
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=63.14 E-value=2.3e+02 Score=30.79 Aligned_cols=60 Identities=20% Similarity=0.252 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQC 432 (964)
Q Consensus 372 ~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~ 432 (964)
..++..++.+...|..+++.|... ......+...+...-........+|...+..+...+
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k-~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i 103 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEK-ATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNI 103 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777788888888887775 333333444444444444444444444444444443
No 206
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=62.90 E-value=2e+02 Score=29.94 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=23.2
Q ss_pred hhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3622 642 NDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQL 680 (964)
Q Consensus 642 ~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~l 680 (964)
+.-|.++.+..+.++..=.+.+.+|.+++....+.....
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~ 50 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNK 50 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 444556666666666666666666666666665555433
No 207
>KOG0046|consensus
Probab=61.89 E-value=6 Score=45.78 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=36.1
Q ss_pred HhhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCC
Q psy3622 13 EFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEP 56 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~ 56 (964)
.+-.-.+-.|+|+++..|.-..-|+||.||.+|.+++-.|-|.+
T Consensus 387 ~reer~fr~WmNSlgv~p~vn~~f~Dl~dglVllq~~dki~pg~ 430 (627)
T KOG0046|consen 387 SREERTFRLWMNSLGVNPYVNNLFEDLRDGLVLLQLYDKVSPGS 430 (627)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHhhhhhhHHHHHHHHccCCc
Confidence 34455678999999865544567999999999999999999966
No 208
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=61.28 E-value=2.7e+02 Score=30.96 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3622 842 LMEHVTNLLAQYHELL 857 (964)
Q Consensus 842 L~~q~~~L~~q~~~Ll 857 (964)
|.+.++.|+-+.++|+
T Consensus 206 LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 206 LESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 209
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.90 E-value=1.8e+02 Score=28.99 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy3622 767 KLKDDF 772 (964)
Q Consensus 767 ~l~~e~ 772 (964)
.|+.++
T Consensus 54 ~L~~d~ 59 (158)
T PF09744_consen 54 LLREDN 59 (158)
T ss_pred HHHHHH
Confidence 333333
No 210
>PLN02939 transferase, transferring glycosyl groups
Probab=60.71 E-value=4.8e+02 Score=33.78 Aligned_cols=103 Identities=15% Similarity=0.135 Sum_probs=57.5
Q ss_pred HHHhHHHHHHhHhhHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 484 LELNMEINKQLSNNTE----EINEYKTKLANCEKEIKKCKEALESKAESLDKLT---NKLESMEKEHVSLTKQIEDQENE 556 (964)
Q Consensus 484 lEr~~~~l~~el~~l~----~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e---~~l~rle~e~~~L~~~~e~~~~~ 556 (964)
|..+|-.|+..++-|+ .+.+.+.....||+|...+...+.+++..+-... .++.-++.+. |..+|+.+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 308 (977)
T PLN02939 231 LKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDC--WWEKVENLQDL 308 (977)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHH--HHHHHHHHHHH
Confidence 3344444444444444 4577778888999998888888887776554333 2455555553 77777776666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHh
Q psy3622 557 LKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588 (964)
Q Consensus 557 ~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l 588 (964)
..++..-...---...+...+.+.+|.|.+.|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (977)
T PLN02939 309 LDRATNQVEKAALVLDQNQDLRDKVDKLEASL 340 (977)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 55443322222222223334445555555443
No 211
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=59.41 E-value=2e+02 Score=29.05 Aligned_cols=54 Identities=31% Similarity=0.329 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 839 RRKLMEHVTNLLAQYHELL-THSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKI 892 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll-~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l 892 (964)
...+...+..|..+...+. +..|.|-+...++...+...+..+++..+.+...+
T Consensus 121 r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 121 RDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444443333222 23344555555555555566666666555554443
No 212
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=58.08 E-value=5.8e+02 Score=33.82 Aligned_cols=349 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Q psy3622 368 TSSAQAKALRLELENKRLLSTIESLHENAFYE-SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEI 446 (964)
Q Consensus 368 ~~~~~~r~~kLe~E~k~L~~~ie~l~~~~~~e-~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~ 446 (964)
.......+...-++.+.+.+.++.++.....- .......||.........+.+++.++........+.......+-..-
T Consensus 67 ~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~ 146 (1109)
T PRK10929 67 AKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQ 146 (1109)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhH
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHhhHH-HHHHHHHHHHhHHHHHHH
Q psy3622 447 RKINESYQNLELQIQVR--------NDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKK 517 (964)
Q Consensus 447 ~~lq~~~e~~~~~~~~l--------e~~~~~l~~e~~~l~~~~eelEr~~~~l~~el~~l~-~~~~Le~~~~~LE~E~~~ 517 (964)
......+.+...+.... +.....++.+..-+...+..++.+..+.....+-+. .+.-+......++.++..
T Consensus 147 ~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~ 226 (1109)
T PRK10929 147 TEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQA 226 (1109)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhhHhhhhhhH
Q psy3622 518 CKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTH 597 (964)
Q Consensus 518 l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~~Ek~k~~~ 597 (964)
++..+- ...+...+....+.....+.......-+...-..|+.|...+......++.+..+...-+-...+
T Consensus 227 Lq~~in---------~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~ 297 (1109)
T PRK10929 227 LRNQLN---------SQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQ 297 (1109)
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHhccccch---hhhHHHHHHH-HhcCHHHHHHHHHHhchhhchhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHH
Q psy3622 598 LKNSLDKLGLAMDD---QTDAENILEK-ILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTAL 673 (964)
Q Consensus 598 L~~ele~L~~~~e~---~~~le~~l~k-i~~~~~~l~~~~e~i~~e~~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~L 673 (964)
+......+..+.+- ..-+-..+.+ ...+|. ......+..+++++..+.=.+..+...+..-....
T Consensus 298 ~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~LP~-----------~~~~~~l~~~IAdlRl~~f~~~q~~~~l~~i~~~~ 366 (1109)
T PRK10929 298 VRQALNTLREQSQWLGVSNALGEALRAQVARLPE-----------MPKPQQLDTEMAQLRVQRLRYEDLLNKQPQLRQIR 366 (1109)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhCCC-----------CcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy3622 674 QLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQ 736 (964)
Q Consensus 674 q~~~~~le~e~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~ 736 (964)
+......-.+.+..+......=..+-+++-..|+..+.+.-.|+-.++.+......+++.+.+
T Consensus 367 ~~~~~~~t~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~QL~~~~~~l~~~L~~ 429 (1109)
T PRK10929 367 QADGQPLTAEQNRILDAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEDALKEVNEATHR 429 (1109)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 213
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=56.70 E-value=4e+02 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=5.7
Q ss_pred ccccc-hhhhHHH
Q psy3622 906 SKKKS-FGANLVR 917 (964)
Q Consensus 906 ~kk~~-~~~~~~~ 917 (964)
+|-+| ||--...
T Consensus 199 ~K~rG~WGE~qLe 211 (475)
T PRK10361 199 NKTQGNWGEVVLT 211 (475)
T ss_pred CCcCcchHHHHHH
Confidence 45555 5544333
No 214
>KOG1962|consensus
Probab=56.67 E-value=1.6e+02 Score=30.93 Aligned_cols=54 Identities=28% Similarity=0.322 Sum_probs=40.8
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 216 LAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269 (964)
Q Consensus 216 l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a 269 (964)
+.+|.+..++++.+++.+++.+...|.........+....+.+..|...|..+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 777888888888888888888888888877777777766666666666655443
No 215
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.61 E-value=1.1e+02 Score=25.70 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3622 836 EDDRRKLMEHVTNLLAQYHELL 857 (964)
Q Consensus 836 Eee~r~L~~q~~~L~~q~~~Ll 857 (964)
..++++|.+.++..+.+...++
T Consensus 34 ~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 34 REERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 216
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.36 E-value=3e+02 Score=29.93 Aligned_cols=56 Identities=29% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSA 430 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~ 430 (964)
.+..++.+.+.++..|+.|..+ ..+...++..+.++..++..++..++.++...+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~q-i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQ-IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554 4444444444444444444444444444444333
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.14 E-value=4.9e+02 Score=32.38 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3622 875 SDKLNNLHRQKEKLEEKIME 894 (964)
Q Consensus 875 ~~k~~~l~~q~e~l~~~l~e 894 (964)
......|+........+++-
T Consensus 501 ~~~~~~le~~~~~~f~~l~~ 520 (650)
T TIGR03185 501 ERKLQQLEEEITKSFKKLMR 520 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666666653
No 218
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.05 E-value=50 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 691 DQMTMTKLHEQLNMEYESVVKEIKVLKSTL 720 (964)
Q Consensus 691 ~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~ 720 (964)
++..|..-++.|.++|+.+..+.+.|....
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443334444444444444444444333
No 219
>KOG4421|consensus
Probab=55.94 E-value=2.8e+02 Score=30.92 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy3622 767 KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALS 825 (964)
Q Consensus 767 ~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~ 825 (964)
+|..+|..|+.+..-++...-.-++....|+.++++....+.+.+++...+-.++..|.
T Consensus 19 klaqeysklraqakvlke~viee~gk~~kl~eelk~k~a~irrieaendsl~frndql~ 77 (637)
T KOG4421|consen 19 KLAQEYSKLRAQAKVLKEAVIEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLE 77 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 33334433333334444444444444455555555555555555555555443333333
No 220
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.57 E-value=2.1e+02 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=15.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3622 365 EQLTSSAQAKALRLELENKRLLSTIES 391 (964)
Q Consensus 365 ~~~~~~~~~r~~kLe~E~k~L~~~ie~ 391 (964)
+.++.++.+.+..-+.++.+-...+.+
T Consensus 26 e~~s~sals~f~AkEeeIErkKmeVre 52 (159)
T PF04949_consen 26 EEMSRSALSAFRAKEEEIERKKMEVRE 52 (159)
T ss_pred HHhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455666666666666655555433
No 221
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.38 E-value=89 Score=28.76 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHhHH
Q psy3622 764 EHSKLKDDFRILFTANEKLKADFRALQE---EHKGNHMEKRKLTLSLTELEGELANRD 818 (964)
Q Consensus 764 e~~~l~~e~~~l~~~~e~l~~~~~~Lq~---e~~~L~~e~~~lk~~l~~le~El~~~~ 818 (964)
+.+.+..+++.++.....+...+..+.. +...+..+.+.++.++..++.++..+.
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433 234445555555555555555555444
No 222
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.52 E-value=4.4e+02 Score=31.39 Aligned_cols=46 Identities=7% Similarity=0.303 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Q psy3622 534 NKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQ 585 (964)
Q Consensus 534 ~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq 585 (964)
..+.+++.|+..-+.-++. .++.+-+-+-.+..++.....+|+.|+
T Consensus 469 ~~i~~LqDEL~TTr~NYE~------QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 469 QNISRLQDELETTRRNYEE------QLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444433 444444444444444444444444443
No 223
>KOG1937|consensus
Probab=52.32 E-value=4.3e+02 Score=30.66 Aligned_cols=172 Identities=19% Similarity=0.223 Sum_probs=74.7
Q ss_pred chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHH---
Q psy3622 641 FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA---------NHNELLQDQMTMTKLHEQLNMEYES--- 708 (964)
Q Consensus 641 ~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e---------~~~~l~~~~~~L~~l~e~l~~E~E~--- 708 (964)
.+..++...+..-+....|.+...-+..++.+++....-.+.- ...+|........+--..+...++.
T Consensus 242 eneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 242 ENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555666666666665555555555554322211111 2233333322222222223333332
Q ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q psy3622 709 -VVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRI--LFTANEKLKAD 785 (964)
Q Consensus 709 -l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~--l~~~~e~l~~~ 785 (964)
+......|+....+++.+-.. -.++.+++..+..+..+..+-+... ..++.+..++-.+..+ +..-..++-..
T Consensus 322 pll~kkl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~---~~Lrsele~lp~dv~rk~ytqrikEi~gn 397 (521)
T KOG1937|consen 322 PLLQKKLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELA---EKLRSELEKLPDDVQRKVYTQRIKEIDGN 397 (521)
T ss_pred hHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHhcCCchhHHHHHHHHHHHHHhH
Confidence 223333444444444444332 1234444444444443333221111 2344444444443322 22223444445
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy3622 786 FRALQEEHKGNHMEKRKLTLSLTELEGELAN 816 (964)
Q Consensus 786 ~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~ 816 (964)
.+....+.-.+.++...|+.+++...+.++.
T Consensus 398 iRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 398 IRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555666666666666666665554
No 224
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.55 E-value=6e+02 Score=32.03 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHK 794 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~ 794 (964)
+++...+..|....+
T Consensus 603 e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 603 EEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 225
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=51.31 E-value=3e+02 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh---HHHHHHHHHHHHHHH
Q psy3622 839 RRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKN---FSDKLNNLHRQKEKL 888 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~~~---~~~k~~~l~~q~e~l 888 (964)
...|..++..|.......-.+...-...|..|=+. ..+++-++.+++...
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~n 185 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQN 185 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544433333333333444444333 234444444444443
No 226
>KOG0239|consensus
Probab=50.50 E-value=6e+02 Score=31.72 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy3622 880 NLHRQKEKLEEKIMEHYR 897 (964)
Q Consensus 880 ~l~~q~e~l~~~l~e~y~ 897 (964)
.-......|.++|.+.-+
T Consensus 297 ~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 297 KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334455555566655433
No 227
>KOG0288|consensus
Probab=50.39 E-value=4.5e+02 Score=30.24 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISA 823 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~ 823 (964)
.++..+...+.++++.+...+...+..+.+|+.|...+.+.+-.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444555555555555555554443333
No 228
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=49.08 E-value=2.1e+02 Score=25.98 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=43.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHh
Q psy3622 508 LANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQN 586 (964)
Q Consensus 508 ~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~ 586 (964)
+-.++.....+...+..+...+..++..+.|+..|...-..++-.+.+ ....+..+++.|..++......+..|+.
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr---~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMR---SKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555666666666666666667777777777665555544222 3455666666666555444444444443
No 229
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=48.70 E-value=2.9e+02 Score=27.60 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEIK 714 (964)
Q Consensus 702 l~~E~E~l~~e~e 714 (964)
+-.|++.++..+.
T Consensus 8 Ig~EfE~lId~~G 20 (158)
T PF09744_consen 8 IGKEFERLIDRYG 20 (158)
T ss_pred HHHHHHHHHHHhC
Confidence 3445555544443
No 230
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=47.51 E-value=3.9e+02 Score=28.73 Aligned_cols=8 Identities=25% Similarity=0.775 Sum_probs=3.2
Q ss_pred HHHHHhcc
Q psy3622 891 KIMEHYRK 898 (964)
Q Consensus 891 ~l~e~y~~ 898 (964)
.+++-|..
T Consensus 153 ~vlea~~~ 160 (251)
T PF11932_consen 153 RVLEAYQI 160 (251)
T ss_pred HHHHHHHH
Confidence 34443333
No 231
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.37 E-value=6.5e+02 Score=31.27 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHH-HHhhcC
Q psy3622 112 GLENMKLLLLLLL-GCAVQC 130 (964)
Q Consensus 112 ~~~el~~ll~l~l-g~av~~ 130 (964)
|.--+...+.++| |....|
T Consensus 40 GKttll~ai~~~LyG~~~~~ 59 (650)
T TIGR03185 40 GKTTLLDAIQLALYGKRALC 59 (650)
T ss_pred CHHHHHHHHHHHhcCccccc
Confidence 5556666665555 443333
No 232
>KOG0962|consensus
Probab=46.30 E-value=8.7e+02 Score=32.43 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh-hhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy3622 839 RRKLMEHVTNLLAQYHELLTHSLEDK-DHYHEEEKNFSDKLNNLHRQKEKLEEKIME 894 (964)
Q Consensus 839 ~r~L~~q~~~L~~q~~~Ll~~~le~k-~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e 894 (964)
.+.+.+++..+.++...+..+.+++. ..+.++...+......+..+...+++..++
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke 1066 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQ 1066 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 45566777777777777777777776 555566666777777777777777777655
No 233
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.96 E-value=3.7e+02 Score=28.02 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT--------KQIEDQENELKKYNDLKREMDELD 571 (964)
Q Consensus 500 ~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~--------~~~e~~~~~~~~l~elE~e~~~L~ 571 (964)
.+..|.+....+|..+...+..+.+...+......+....++|+..|= .++++.+.+...=+.++....+..
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak 112 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAK 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 566777777777777777777777777777777777777788877742 357777777666666666666666
Q ss_pred hhhhhhHhhHHHHHhHhh
Q psy3622 572 SKYQVDKNTLSVLQNDLV 589 (964)
Q Consensus 572 ~~~~~~~~tl~~Lq~~l~ 589 (964)
..+......++.+..+|.
T Consensus 113 ~~l~~aE~~~e~~~~~L~ 130 (207)
T PF05546_consen 113 EALEEAEEKVEEAFDDLM 130 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555543
No 234
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=45.43 E-value=7.4e+02 Score=31.36 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3622 661 SQISSLTSQHTALQLANSQLI 681 (964)
Q Consensus 661 sq~~sl~~q~~~Lq~~~~~le 681 (964)
.-..++..+...++....+.+
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAE 214 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544433
No 235
>KOG3000|consensus
Probab=45.11 E-value=22 Score=39.02 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=31.7
Q ss_pred hhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCC
Q psy3622 16 KGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDP 54 (964)
Q Consensus 16 ~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp 54 (964)
...++.|||.|.. .....+++++.|.+..+++.-|=|
T Consensus 17 R~E~laW~N~~l~--~n~~kIEe~~tGaaycqlmd~l~p 53 (295)
T KOG3000|consen 17 RLEILAWINDLLQ--LNLTKIEELCTGAAYCQLMDMLFP 53 (295)
T ss_pred hHHHHHHHHhhhh--cchhhhhhhcccchhhhhhhhccC
Confidence 3457999999974 558899999999999999988877
No 236
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=44.17 E-value=2.5e+02 Score=33.00 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy3622 766 SKLKDDF 772 (964)
Q Consensus 766 ~~l~~e~ 772 (964)
+.|..++
T Consensus 83 ~~l~~eN 89 (472)
T TIGR03752 83 EALKAEN 89 (472)
T ss_pred HHHHHHH
Confidence 3333333
No 237
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.87 E-value=2.4e+02 Score=33.07 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3622 837 DDRRKLMEHVTNLLAQY 853 (964)
Q Consensus 837 ee~r~L~~q~~~L~~q~ 853 (964)
.+...++..+..|..+.
T Consensus 123 ~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 123 SERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 238
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=43.08 E-value=4.2e+02 Score=27.78 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy3622 379 ELENKRLLSTIESLHE 394 (964)
Q Consensus 379 e~E~k~L~~~ie~l~~ 394 (964)
+..++.+...+..++.
T Consensus 29 ~q~ird~e~~l~~a~~ 44 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQ 44 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 239
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=42.28 E-value=3.2e+02 Score=26.18 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 658 TSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRD 722 (964)
Q Consensus 658 ~L~sq~~sl~~q~~~Lq~~~~~le~e~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~ 722 (964)
+|.|++..+....+++|..-. ........-..+.+.+..+++.|..+.-.|+.....
T Consensus 3 sLeP~iE~LInrInelQQaKK--------k~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnk 59 (134)
T PF15233_consen 3 SLEPQIEDLINRINELQQAKK--------KSSEELGEAQALWEALQRELDSLNGEKVHLEEILNK 59 (134)
T ss_pred CccchHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 577888888888888888433 333345556677788888999888887777766553
No 240
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.98 E-value=3.3e+02 Score=27.32 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHhHhhHH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 475 QKLEWKNKELELNMEINKQLSNNTE---EINEYKTKLANCEKEIKKCKEALESKA 526 (964)
Q Consensus 475 ~~l~~~~eelEr~~~~l~~el~~l~---~~~~Le~~~~~LE~E~~~l~e~lee~e 526 (964)
..+...+.++......+..++..|. ...+|......|+.++..+...++...
T Consensus 82 ~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 82 KELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444 234555555555555555555555433
No 241
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.97 E-value=1.9e+02 Score=23.53 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ 827 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~ 827 (964)
+++......|......|..+++.++..+...+.|......++..+-..
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~s 53 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQS 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence 444444455555555555555566555555666666555555444333
No 242
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.71 E-value=2.2e+02 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHH
Q psy3622 416 LQVEDLEETKRRLSAQCTEYESKFTKLETEI 446 (964)
Q Consensus 416 ~eie~l~~~le~~~~~~~~lE~~~k~l~ee~ 446 (964)
.++..|+..++.+...+...+...+.+..++
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333333333333333
No 243
>KOG1003|consensus
Probab=41.68 E-value=4.1e+02 Score=27.36 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 779 NEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLE 836 (964)
Q Consensus 779 ~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LE 836 (964)
.+......+.+.....+-...-....+.+..|+.+.+.|.+.+-....++..+...|+
T Consensus 139 ~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 139 EEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444455555555555555555555555544444444
No 244
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=41.16 E-value=5.1e+02 Score=28.24 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhcc
Q psy3622 885 KEKLEEKIMEHYRK 898 (964)
Q Consensus 885 ~e~l~~~l~e~y~~ 898 (964)
...+...+..-|-+
T Consensus 146 r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 146 RRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHhCc
Confidence 33344444444444
No 245
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.68 E-value=2.9e+02 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.312 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 765 HSKLKDDFRILFTANEKLKADFRALQEEHK 794 (964)
Q Consensus 765 ~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~ 794 (964)
++++..+++.|.+..+++......||.+..
T Consensus 42 LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 42 LRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554
No 246
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=40.61 E-value=5.2e+02 Score=28.19 Aligned_cols=44 Identities=7% Similarity=0.283 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy3622 694 TMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQL 737 (964)
Q Consensus 694 ~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~L 737 (964)
.+..+...++.-...+..++..++..+.++..+..+|..++..-
T Consensus 159 e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekk 202 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKK 202 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555666666666666655555544433
No 247
>PF13514 AAA_27: AAA domain
Probab=40.38 E-value=1e+03 Score=31.65 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=22.8
Q ss_pred hhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 642 NDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA 683 (964)
Q Consensus 642 ~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e 683 (964)
...++.....+...+..+......+.......+..+......
T Consensus 675 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~ 716 (1111)
T PF13514_consen 675 REQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAE 716 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555555556666666555544443
No 248
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.63 E-value=2.6e+02 Score=25.84 Aligned_cols=33 Identities=30% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHH
Q psy3622 783 KADFRALQEEHKGN--HMEKRKLTLSLTELEGELA 815 (964)
Q Consensus 783 ~~~~~~Lq~e~~~L--~~e~~~lk~~l~~le~El~ 815 (964)
......+....+.+ +.++..|+..++++.+++.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 33333444444444 4444444444444444444
No 249
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.21 E-value=9.9e+02 Score=31.05 Aligned_cols=15 Identities=20% Similarity=0.229 Sum_probs=8.6
Q ss_pred CchhhhHHhhcCCHH
Q psy3622 132 NKETFIERIKELPVE 146 (964)
Q Consensus 132 ~~~~~I~~I~~L~~~ 146 (964)
.-..||+.+..+|.+
T Consensus 118 ~v~~~i~~llgld~~ 132 (908)
T COG0419 118 DVNEKIEELLGLDKD 132 (908)
T ss_pred hHHHHHHHHhCCCHH
Confidence 455566666666633
No 250
>KOG0249|consensus
Probab=38.96 E-value=8.4e+02 Score=30.17 Aligned_cols=22 Identities=0% Similarity=-0.183 Sum_probs=9.7
Q ss_pred hchhHhhHHhhhhHHHHhhhHH
Q psy3622 640 HFNDESSLNNAKLEVDLKTSQS 661 (964)
Q Consensus 640 ~~~~~Lq~~~~~Lq~e~~~L~s 661 (964)
..+++++.....++.+..+...
T Consensus 70 ~ritt~e~rflnaqre~t~~~d 91 (916)
T KOG0249|consen 70 ERITTLEKRFLNAQRESTSIHD 91 (916)
T ss_pred cccchHHHHHHhccCCCCCccc
Confidence 3444444444444444444333
No 251
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.28 E-value=9.2e+02 Score=30.42 Aligned_cols=7 Identities=29% Similarity=0.472 Sum_probs=3.4
Q ss_pred hcccccC
Q psy3622 896 YRKLDSC 902 (964)
Q Consensus 896 y~~~~~a 902 (964)
.+++++|
T Consensus 407 ~rIid~A 413 (726)
T PRK09841 407 VRIIDPA 413 (726)
T ss_pred eeeccCC
Confidence 3445555
No 252
>KOG4809|consensus
Probab=38.11 E-value=7.7e+02 Score=29.46 Aligned_cols=66 Identities=18% Similarity=0.375 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHh
Q psy3622 373 AKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKL-------SLQVEDLEETKRRLSAQCTEYESKF 439 (964)
Q Consensus 373 ~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L-------~~eie~l~~~le~~~~~~~~lE~~~ 439 (964)
..|...+++++.|...+..++.. +.+..+....+...-..| ..++.++...++..+..+..++...
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~-l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAE-LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777664 433333333333333333 3344444444444444444444333
No 253
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.75 E-value=2e+02 Score=26.67 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 729 TVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRIL 775 (964)
Q Consensus 729 ~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l 775 (964)
++-+++..++.++..+-.+...|+. .+..+-.++..|+-++..|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~---~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKK---QLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555554444 2223444444444444333
No 254
>KOG2129|consensus
Probab=37.61 E-value=6.8e+02 Score=28.72 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=19.4
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 650 AKLEVDLKTSQSQISSLTSQHTALQLANSQLILA 683 (964)
Q Consensus 650 ~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e 683 (964)
..|...+..|+.+...+..+...+...+...+.+
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qee 79 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEE 79 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhc
Confidence 3455566666666655666666666655544443
No 255
>KOG0249|consensus
Probab=37.50 E-value=8.9e+02 Score=30.00 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy3622 374 KALRLELENKRLLSTIESLHEN 395 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~ 395 (964)
-....+..+.+|+..+.....+
T Consensus 43 ~~~~a~e~~~~lq~~~~e~~aq 64 (916)
T KOG0249|consen 43 DLIKAEEMNTKLQRDIREAMAQ 64 (916)
T ss_pred HHHHHHHHHHHHhhhhhhHHhh
Confidence 3444555677777776665554
No 256
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.86 E-value=7.1e+02 Score=28.70 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHHHHHH
Q psy3622 255 INRMKAEMLELRAEARSGKA--LESEIQRYKDKLTDLEYYKSRVEE 298 (964)
Q Consensus 255 ~~~l~~e~~~l~~~a~~~~~--le~~~~~lk~kl~~l~~~k~~~~e 298 (964)
-.+++.+-..+...+....+ -...-..|..++.++.+.+..+..
T Consensus 19 s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~ 64 (384)
T PF03148_consen 19 SERLRQESRRLINETDARTKWDQYDSNKRLRQRIRDIRFWKNELER 64 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555545543333 333455677788888776655443
No 257
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.83 E-value=5.5e+02 Score=27.41 Aligned_cols=94 Identities=15% Similarity=0.248 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--
Q psy3622 228 RKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRA-- 305 (964)
Q Consensus 228 r~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~lk~kl~~l~~~k~~~~el~e~~~~-- 305 (964)
||+.+|++-....+.+.-...+.+- +++.. ...+....+|+ ..||+.+..+..++.+++.+-..+..
T Consensus 4 RKLQ~Eid~~lKkv~EG~~~F~~i~---~K~~~-----~~n~~QKEK~E---~DLKkEIKKLQR~RdQIK~W~~~~diKd 72 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQEGVEEFDEIY---EKVES-----ATNQNQKEKLE---ADLKKEIKKLQRLRDQIKTWLSSNDIKD 72 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHc-----ccCcchHHHHH---HHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 6777777766666554444444333 33332 11112223455 46778888888888888877655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q psy3622 306 INEIALERDANAEKLQQLIEENTNLSLLSKS 336 (964)
Q Consensus 306 l~~l~~E~d~~~e~~eel~ee~~~Le~~~~~ 336 (964)
-.. +...+..|+.-++..+..+...+.
T Consensus 73 k~~----L~e~Rk~IE~~MErFK~vEkesKt 99 (233)
T PF04065_consen 73 KKK----LLENRKLIEEQMERFKVVEKESKT 99 (233)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222 233456666666777777765443
No 258
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.17 E-value=5.5e+02 Score=26.87 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 835 LEDDRRKLMEHVTNLLAQYHELL 857 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~q~~~Ll 857 (964)
+-.+|..|...+..|..+++.|.
T Consensus 161 i~~EN~~L~k~L~~l~~e~~~L~ 183 (206)
T PF14988_consen 161 IKRENQQLRKELLQLIQEAQKLE 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555554444
No 259
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=34.99 E-value=5e+02 Score=26.41 Aligned_cols=86 Identities=16% Similarity=0.287 Sum_probs=42.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Q psy3622 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNT 580 (964)
Q Consensus 501 ~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~t 580 (964)
++..+....-||++++-++.-+.-.+......-.+-..++.+... ....+.....++.-||.+.-.|..-.......
T Consensus 66 L~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~---~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~K 142 (178)
T PF14073_consen 66 LSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQ---DQSELQAKLEKLEKLEKEYLRLTATQSLAETK 142 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677777777777776665554333222222233333211 12222233344555555555555444444455
Q ss_pred HHHHHhHhh
Q psy3622 581 LSVLQNDLV 589 (964)
Q Consensus 581 l~~Lq~~l~ 589 (964)
|..|...|.
T Consensus 143 i~~LE~KL~ 151 (178)
T PF14073_consen 143 IKELEEKLQ 151 (178)
T ss_pred HHHHHHHHH
Confidence 555554443
No 260
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=34.96 E-value=8.6e+02 Score=29.09 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=34.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 218 VELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269 (964)
Q Consensus 218 ~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a 269 (964)
.|.-.-++..++.+.++..-..+|.-....++.....+..|-..........
T Consensus 90 AE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i 141 (570)
T COG4477 90 AEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEI 141 (570)
T ss_pred HHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3433345667777788888888888888888887777766666544444333
No 261
>KOG4603|consensus
Probab=34.68 E-value=4.9e+02 Score=26.15 Aligned_cols=25 Identities=8% Similarity=0.305 Sum_probs=12.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 871 EKNFSDKLNNLHRQKEKLEEKIMEHY 896 (964)
Q Consensus 871 ~~~~~~k~~~l~~q~e~l~~~l~e~y 896 (964)
.+.+...++.+...+. +..-|++.|
T Consensus 158 ~~~y~~~~~~wrk~kr-mf~ei~d~~ 182 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKR-MFREIIDKL 182 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3445555555554444 455555544
No 262
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.37 E-value=2.2e+02 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.491 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 528 SLDKLTNKLESMEKEHVSLTKQIEDQENELK 558 (964)
Q Consensus 528 ~le~~e~~l~rle~e~~~L~~~~e~~~~~~~ 558 (964)
.+..+...+..+..+++.++..++.+.....
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444333
No 263
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=33.81 E-value=3.3e+02 Score=23.92 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3622 760 NLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKL 803 (964)
Q Consensus 760 ~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~l 803 (964)
.+..+...|+..+..|....+..+.++..|..+.+-|+.-+..|
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666555554
No 264
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=33.79 E-value=6.4e+02 Score=27.22 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=27.8
Q ss_pred CchhHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q psy3622 361 NSLSEQLTSS---AQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVE 419 (964)
Q Consensus 361 ~sl~~~~~~~---~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie 419 (964)
.++...++.. -+.|...||.|.+.+...+..|+.. +..|...+.+|..++-
T Consensus 78 ~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~E--------v~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 78 SSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRRE--------VESLRADNVKLYEKIR 131 (248)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4444444322 4555666666666666666655553 5555555555555544
No 265
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.59 E-value=3.8e+02 Score=24.54 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy3622 802 KLTLSLT 808 (964)
Q Consensus 802 ~lk~~l~ 808 (964)
.+..++.
T Consensus 81 ~l~~~~~ 87 (105)
T cd00632 81 RLERQEE 87 (105)
T ss_pred HHHHHHH
Confidence 3333333
No 266
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.50 E-value=3.3e+02 Score=23.84 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3622 700 EQLNMEYESVVKEIKVLKST 719 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~Lk~~ 719 (964)
+.+++||+.+..+....+..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~ 26 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQ 26 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45566666665555444443
No 267
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.24 E-value=2.9e+02 Score=24.97 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 729 TVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDD------------FRILFTANEKLKADFRALQEEHKGN 796 (964)
Q Consensus 729 ~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e------------~~~l~~~~e~l~~~~~~Lq~e~~~L 796 (964)
.+...+..+..++..+...+..+....+.+..+..+...+..+ ......-...+......+..+...+
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l 81 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKL 81 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3622 797 HMEKRKLTLSLTELEGELA 815 (964)
Q Consensus 797 ~~e~~~lk~~l~~le~El~ 815 (964)
....+.+...+..++..+.
T Consensus 82 ~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 82 EKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
No 268
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.07 E-value=2.6e+02 Score=25.98 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy3622 839 RRKLMEHV 846 (964)
Q Consensus 839 ~r~L~~q~ 846 (964)
|.+|...+
T Consensus 45 N~~Lr~~l 52 (107)
T PF06156_consen 45 NEHLRERL 52 (107)
T ss_pred HHHHHHHH
Confidence 33333333
No 269
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=32.93 E-value=5.3e+02 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 826 VQLSKYQNKLEDDRRKLMEHVTNLL 850 (964)
Q Consensus 826 ~~~~~L~~~LEee~r~L~~q~~~L~ 850 (964)
.++..+.+.++.+...|..+++.++
T Consensus 127 ~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 127 LKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555444
No 270
>KOG3091|consensus
Probab=32.56 E-value=9e+02 Score=28.61 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3622 759 SNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKL 803 (964)
Q Consensus 759 ~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~l 803 (964)
..++..|.+|..++-++....+=++..-..|...-++|+..+..|
T Consensus 379 ~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtl 423 (508)
T KOG3091|consen 379 EEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTL 423 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHH
Confidence 344444555555554444443333333334444444444433333
No 271
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.42 E-value=1.5e+02 Score=25.68 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=38.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccchhhhHHH---HHHhhchhh
Q psy3622 868 HEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVR---KVRKAGSEL 926 (964)
Q Consensus 868 ~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~~~~kk~~~~~~~~~---k~~k~~~~~ 926 (964)
..+++.+.+++.+|+.++..+-..+.|-|.- | |-.||-.|.|| ++||--+.+
T Consensus 13 ~~QLrafIerIERlEeEk~~i~~dikdvy~e---a----kg~GFDvKa~r~iirlrK~D~~e 67 (85)
T COG3750 13 AGQLRAFIERIERLEEEKKTIADDIKDVYAE---A----KGHGFDVKAVRTIIRLRKLDKAE 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HcCCccHHHHHHHHHHHhhhHHH
Confidence 3467889999999999999999999887754 3 34457777666 556554433
No 272
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.27 E-value=5.8e+02 Score=26.28 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3622 765 HSKLKDDFRILFTANEKLK 783 (964)
Q Consensus 765 ~~~l~~e~~~l~~~~e~l~ 783 (964)
...|+.++...+.+...+.
T Consensus 128 a~~LqaDl~~~~~Q~~~va 146 (192)
T PF11180_consen 128 ANRLQADLQIARQQQQQVA 146 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445443333333333
No 273
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.91 E-value=8.9e+02 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q psy3622 463 RNDELDNMNREKQKLEWKNKELELNMEINKQLS 495 (964)
Q Consensus 463 le~~~~~l~~e~~~l~~~~eelEr~~~~l~~el 495 (964)
++.-...|......|-..+++|+...+.|++.+
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV 236 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDV 236 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555666666665555543
No 274
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.49 E-value=4e+02 Score=24.22 Aligned_cols=32 Identities=6% Similarity=0.092 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy3622 767 KLKDDFRILFTANEKLKADFRALQEEHKGNHM 798 (964)
Q Consensus 767 ~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~ 798 (964)
....++..+......+......+...+.+++.
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~ 63 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP 63 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444443333
No 275
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=31.07 E-value=4.8e+02 Score=25.01 Aligned_cols=83 Identities=12% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy3622 378 LELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLE 457 (964)
Q Consensus 378 Le~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~ 457 (964)
|......+-+.++.+.+. |...|++|...|+.+-..++...............+......+..+++...
T Consensus 41 m~~A~~~v~kql~~vs~~-----------l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSES-----------LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 458 LQIQVRNDELDNMN 471 (964)
Q Consensus 458 ~~~~~le~~~~~l~ 471 (964)
..+..|+.++.++.
T Consensus 110 ~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 110 QMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHh
No 276
>KOG2991|consensus
Probab=30.51 E-value=7e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=23.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHH------------HHHHHHHHHHHHHHHH
Q psy3622 794 KGNHMEKRKLTLSLTELEGELANRD------------DAISALSVQLSKYQNK 834 (964)
Q Consensus 794 ~~L~~e~~~lk~~l~~le~El~~~~------------e~~~~L~~~~~~L~~~ 834 (964)
..|+++++.-+..+.+++.+++.|+ ..|..|..++.+|..+
T Consensus 180 ~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q 232 (330)
T KOG2991|consen 180 LRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQ 232 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 4455666666667777777777654 4455555554444444
No 277
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=30.10 E-value=5.7e+02 Score=25.57 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy3622 693 MTMTKLHEQLNMEYESVVKEIKVLKSTLRDVK 724 (964)
Q Consensus 693 ~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le 724 (964)
..+-.+.+..+.+|+.+..++..++......=
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I 47 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKELEEVKEEVSEVI 47 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777777666666655544333
No 278
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.68 E-value=4.9e+02 Score=24.68 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3622 797 HMEKRKLTLSLTELEGE 813 (964)
Q Consensus 797 ~~e~~~lk~~l~~le~E 813 (964)
...++.|+.+-..++.+
T Consensus 83 e~ri~tLekQe~~l~e~ 99 (119)
T COG1382 83 ELRIKTLEKQEEKLQER 99 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 279
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=29.47 E-value=3.9e+02 Score=25.88 Aligned_cols=8 Identities=38% Similarity=0.185 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy3622 808 TELEGELA 815 (964)
Q Consensus 808 ~~le~El~ 815 (964)
+.++.|..
T Consensus 21 ~~WeiERa 28 (134)
T PF08232_consen 21 NQWEIERA 28 (134)
T ss_pred HHhHHHHH
Confidence 33333333
No 280
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.30 E-value=1e+03 Score=28.26 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3622 880 NLHRQKEKLEEKIME 894 (964)
Q Consensus 880 ~l~~q~e~l~~~l~e 894 (964)
.+......+...|.+
T Consensus 279 ~Lk~H~~svr~HI~~ 293 (475)
T PRK10361 279 ALQEHIASVRNHIRL 293 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 281
>KOG0239|consensus
Probab=28.37 E-value=1.3e+03 Score=28.95 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy3622 837 DDRRKLMEHVTNLLA 851 (964)
Q Consensus 837 ee~r~L~~q~~~L~~ 851 (964)
+.++.|.+++..|+.
T Consensus 300 ~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 300 EERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345666666666653
No 282
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.90 E-value=3.8e+02 Score=25.09 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 504 Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
+-..+..+|..+..+-.++.+....+..+..+-.++..|+..||..+..
T Consensus 6 lfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 6 IFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555656666666666666665554
No 283
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=27.89 E-value=1.1e+03 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKN 481 (964)
Q Consensus 440 k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~ 481 (964)
+++..|...++..++.+.......+....+|..++..+...+
T Consensus 16 ~Ql~~~~~~lqaev~~lr~~~~~~e~~~~~l~~el~qvr~~~ 57 (531)
T PF15450_consen 16 KQLEQWVAELQAEVACLRGHKERCERATLSLLRELLQVRARV 57 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555554444445555555555544444433
No 284
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.78 E-value=3.5e+02 Score=25.29 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 836 EDDRRKLMEHVTNL 849 (964)
Q Consensus 836 Eee~r~L~~q~~~L 849 (964)
..||.+|.+.+..+
T Consensus 42 ~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 42 RLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555444443
No 285
>PRK11519 tyrosine kinase; Provisional
Probab=27.76 E-value=1.3e+03 Score=29.01 Aligned_cols=7 Identities=29% Similarity=0.425 Sum_probs=3.4
Q ss_pred hcccccC
Q psy3622 896 YRKLDSC 902 (964)
Q Consensus 896 y~~~~~a 902 (964)
.+++++|
T Consensus 407 ~rIid~A 413 (719)
T PRK11519 407 VRIVDPA 413 (719)
T ss_pred eEEEecC
Confidence 3345555
No 286
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.75 E-value=93 Score=31.28 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=5.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q psy3622 752 KFESHSLSNLRAEHSKLKDDFRI 774 (964)
Q Consensus 752 ~~e~~~~~~l~~e~~~l~~e~~~ 774 (964)
+.|+.....|+.++++|++|+++
T Consensus 20 E~ELdEKE~L~~~~QRLkDE~RD 42 (166)
T PF04880_consen 20 ESELDEKENLREEVQRLKDELRD 42 (166)
T ss_dssp HHHHHHHHHHHHCH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 287
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.73 E-value=1.3e+03 Score=29.02 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=11.6
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHH
Q psy3622 649 NAKLEVDLKTSQSQISSLTSQHTALQL 675 (964)
Q Consensus 649 ~~~Lq~e~~~L~sq~~sl~~q~~~Lq~ 675 (964)
..-+..++..+..+......+...++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 288
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.70 E-value=8.3e+02 Score=26.64 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 491 NKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDEL 570 (964)
Q Consensus 491 l~~el~~l~~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L 570 (964)
|+..+..+..........+..+.+.......++.....++.....+.+.+.++..++..+ +....++..++.+.-.+
T Consensus 171 LR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i---~e~~~rl~~l~~~~~~l 247 (269)
T PF05278_consen 171 LRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERI---TEMKGRLGELEMESTRL 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HhhhhhhHhhHHHHH
Q psy3622 571 DSKYQVDKNTLSVLQ 585 (964)
Q Consensus 571 ~~~~~~~~~tl~~Lq 585 (964)
........-.|.-.+
T Consensus 248 ~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 248 SKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHhc
No 289
>PRK11519 tyrosine kinase; Provisional
Probab=27.63 E-value=1.3e+03 Score=28.99 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy3622 777 TANEKLKADFRALQEEHKG 795 (964)
Q Consensus 777 ~~~e~l~~~~~~Lq~e~~~ 795 (964)
++.+-.+..|..+....++
T Consensus 377 Re~~~~~~lY~~lL~r~~e 395 (719)
T PRK11519 377 RDVESGQQVYMQLLNKQQE 395 (719)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 290
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.06 E-value=5e+02 Score=23.94 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy3622 794 KGNHMEKRKLTLSLTELEGELANR--DDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSL 861 (964)
Q Consensus 794 ~~L~~e~~~lk~~l~~le~El~~~--~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~~~l 861 (964)
..+...+......+..++.++..+ .+.+..|+..++++ .++.+.+..+++.+..+..-|++..+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el----~G~~~~l~~~l~~v~~~~~lLlE~~l 103 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAEL----RGELKELSARLQGVSHQLDLLLENEL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555554 45555555555553 44555555555555555555555443
No 291
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=27.01 E-value=8.5e+02 Score=26.57 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3622 536 LESMEKEHVSLTKQIEDQE 554 (964)
Q Consensus 536 l~rle~e~~~L~~~~e~~~ 554 (964)
|.-+-+|+++|+.-|+..+
T Consensus 119 LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455666665555533
No 292
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=26.92 E-value=8.8e+02 Score=26.72 Aligned_cols=52 Identities=23% Similarity=0.386 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHh-hCCCCCCCCCCCCCcc-hH--HHhhhHHHHHHHHHHHHHHHhhhhc
Q psy3622 40 ADGIYIHEVYLL-IDPEPVHQSVVPSLRN-AS--VRIKNFNTIVKNIKSLYEEELCQIV 94 (964)
Q Consensus 40 ~dG~~l~~vl~~-iDp~~~~~~~~~~~~~-~~--~~~~Nl~~i~~~i~~yy~e~l~~~~ 94 (964)
++|-.|+.++.. +|. ++.+-.|.+.| |. ....|...+-+++.. |...+.+.+
T Consensus 5 vtG~~L~~L~~~Yv~a--In~G~vP~iesa~~~~~e~e~~~A~~~A~~~-Y~~~m~~~~ 60 (297)
T PF02841_consen 5 VTGPMLAELVKSYVDA--INSGSVPCIESAWQAVAEAENRAAVEKAVEH-YEEQMEQRV 60 (297)
T ss_dssp -BHHHHHHHHHHHHHH--HHTTS--BHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-
T ss_pred cccHHHHHHHHHHHHH--HhCCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 567776666543 222 12222234444 65 556677777777655 455566655
No 293
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.58 E-value=3.3e+02 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3622 775 LFTANEKLKADFRALQEEHKGNHMEKRKL 803 (964)
Q Consensus 775 l~~~~e~l~~~~~~Lq~e~~~L~~e~~~l 803 (964)
++.+.+.+..+...+..+...++..+.++
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~l 34 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSL 34 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544444444333
No 294
>KOG2751|consensus
Probab=26.35 E-value=1.1e+03 Score=27.50 Aligned_cols=37 Identities=11% Similarity=0.180 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN 816 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~ 816 (964)
++.-..|...+-+.=..+.++.+++.++.=.+..+..
T Consensus 228 ~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldk 264 (447)
T KOG2751|consen 228 DQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDK 264 (447)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH
Confidence 3334444444444444455555555555444444443
No 295
>PRK10869 recombination and repair protein; Provisional
Probab=26.19 E-value=1.2e+03 Score=28.20 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 714 KVLKSTLRDVKNENKTVKEQYSQLKVSYESL 744 (964)
Q Consensus 714 e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L 744 (964)
..++..+..+....+....++.-|+-+++++
T Consensus 167 ~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 167 HQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444
No 296
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.80 E-value=7.4e+02 Score=25.46 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 840 RKLMEHVTNLLAQY 853 (964)
Q Consensus 840 r~L~~q~~~L~~q~ 853 (964)
..+.+.+.-|..+|
T Consensus 166 k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 166 KKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 297
>KOG4196|consensus
Probab=25.12 E-value=2.4e+02 Score=26.91 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=27.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy3622 787 RALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSV 826 (964)
Q Consensus 787 ~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~ 826 (964)
+.|..+...|..++..|+.++..+..|++.|+..|..|..
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666777777777777777777777766655543
No 298
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.64 E-value=5.2e+02 Score=26.17 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 760 NLRAEHSKLKDDFRILFTANEKLKADF 786 (964)
Q Consensus 760 ~l~~e~~~l~~e~~~l~~~~e~l~~~~ 786 (964)
.+....+.|+.+...+..+.+.+...|
T Consensus 141 ~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 141 EIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666655555556665555
No 299
>PLN03188 kinesin-12 family protein; Provisional
Probab=24.52 E-value=1.8e+03 Score=29.55 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3622 700 EQLNMEYESVVKEIKV----LKSTLRDVKNENKTVKEQYS---QLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDF 772 (964)
Q Consensus 700 e~l~~E~E~l~~e~e~----Lk~~~~~Le~e~r~l~~~~~---~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~ 772 (964)
..|.+|+..++.+.++ |+...+.|..++|+.-+.+. +|--++.+ .-+++..+.++...+..++.++...+
T Consensus 1158 ~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~e---aeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1158 NALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKE---AEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777665554 55555566666555555332 23222222 11223333333344555555555555
Q ss_pred HHHHHHH
Q psy3622 773 RILFTAN 779 (964)
Q Consensus 773 ~~l~~~~ 779 (964)
+.|...+
T Consensus 1235 ~klkrkh 1241 (1320)
T PLN03188 1235 DKLKRKH 1241 (1320)
T ss_pred HHHHHHH
Confidence 4444444
No 300
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.48 E-value=5.9e+02 Score=26.04 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=13.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3622 794 KGNHMEKRKLTLSLTELEGELANRDDAISAL 824 (964)
Q Consensus 794 ~~L~~e~~~lk~~l~~le~El~~~~e~~~~L 824 (964)
..+..++..++.++...+.++..++.|...+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 301
>KOG2264|consensus
Probab=24.48 E-value=5.2e+02 Score=30.84 Aligned_cols=44 Identities=23% Similarity=0.126 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3622 766 SKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTE 809 (964)
Q Consensus 766 ~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~ 809 (964)
++|+.++.++....+.++...-+-|.+...|++++++.+.++++
T Consensus 103 qel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 103 QELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444433
No 302
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.28 E-value=1.3e+03 Score=27.92 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 730 VKEQYSQLKVSYES 743 (964)
Q Consensus 730 l~~~~~~Le~~~~~ 743 (964)
+..++..++-++.+
T Consensus 187 ~~~eld~L~~ql~E 200 (563)
T TIGR00634 187 LAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 303
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.26 E-value=1.3e+03 Score=27.68 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKV 739 (964)
Q Consensus 702 l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~ 739 (964)
....++.|..++....++......+.+.|..++...+.
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ 455 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEK 455 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777677676666665544443
No 304
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=23.96 E-value=2.8e+02 Score=25.60 Aligned_cols=44 Identities=9% Similarity=0.090 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 226 KLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269 (964)
Q Consensus 226 klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a 269 (964)
..+.+++++.+...++.+++.+...+..++..|+....-+...|
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~A 71 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERA 71 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 45666666666666666666666676666666665333333333
No 305
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.90 E-value=7.4e+02 Score=24.78 Aligned_cols=69 Identities=25% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 706 YESVVKEIKVLKST---LRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKL 782 (964)
Q Consensus 706 ~E~l~~e~e~Lk~~---~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l 782 (964)
++.++.=+..++.. ...+..+++.++....+|..++..|+.+...|.. .+..+..+|..|..-.++.
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~----------~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQ----------RLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy3622 783 KA 784 (964)
Q Consensus 783 ~~ 784 (964)
+.
T Consensus 152 Rk 153 (161)
T TIGR02894 152 RK 153 (161)
T ss_pred HH
No 306
>KOG4460|consensus
Probab=23.59 E-value=1.3e+03 Score=27.60 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy3622 795 GNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDD---RRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEE 871 (964)
Q Consensus 795 ~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee---~r~L~~q~~~L~~q~~~Ll~~~le~k~~~~ee~ 871 (964)
+++.+++.++....+--.++...++....+......|...+|+- ...|.+.++.|+..-+.-+.-...+...|..|.
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El 664 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL 664 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 34455566665555555555555544444444444444443331 233445555555544444444555566666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHhcc
Q psy3622 872 KNFSDKLNNLHRQKEKLEEKI-MEHYRK 898 (964)
Q Consensus 872 ~~~~~k~~~l~~q~e~l~~~l-~e~y~~ 898 (964)
.-.-+....|..-++++..+. ..+|++
T Consensus 665 q~~~~~~~~L~~~iET~~~~~~KQ~~H~ 692 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKKDKQQQHM 692 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666555 346666
No 307
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.30 E-value=8.3e+02 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q psy3622 803 LTLSLTELEGELANRDDAISALS 825 (964)
Q Consensus 803 lk~~l~~le~El~~~~e~~~~L~ 825 (964)
....+..++...+.+++.+...+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333333
No 308
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=22.80 E-value=1.3e+03 Score=27.10 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHH
Q psy3622 702 LNMEYESVVKEIKV----LKSTLRDVKNENKTVKE 732 (964)
Q Consensus 702 l~~E~E~l~~e~e~----Lk~~~~~Le~e~r~l~~ 732 (964)
+.+++..+..+.++ |+...+.|..++++.-+
T Consensus 390 laaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAE 424 (488)
T PF06548_consen 390 LAAEISALRAEREKERRFLKDENKGLQIQLRDTAE 424 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 34444444443332 34444444444444333
No 309
>PRK13694 hypothetical protein; Provisional
Probab=22.79 E-value=2.4e+02 Score=24.77 Aligned_cols=44 Identities=18% Similarity=0.470 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccchhhhHHH
Q psy3622 867 YHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVR 917 (964)
Q Consensus 867 ~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~~~~kk~~~~~~~~~ 917 (964)
-.++++++.+++.+|+.++..+-+.+.+-|.- | |-.||-.|.++
T Consensus 10 a~~~Lr~fIERIERLEeEkk~i~~dikdVyaE---A----K~~GfD~K~~r 53 (83)
T PRK13694 10 AKEQLRAFIERIERLEEEKKTISDDIKDVYAE---A----KGNGFDVKALK 53 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HhcCCcHHHHH
Confidence 35678999999999999999999999887743 3 44556666555
No 310
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.60 E-value=7.3e+02 Score=29.87 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy3622 840 RKLMEHVTNLLAQ 852 (964)
Q Consensus 840 r~L~~q~~~L~~q 852 (964)
+.+..++..|..+
T Consensus 155 ~~~~~~l~~l~~~ 167 (525)
T TIGR02231 155 RELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 311
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.12 E-value=5e+02 Score=22.18 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3622 695 MTKLHEQLNMEYESVV 710 (964)
Q Consensus 695 L~~l~e~l~~E~E~l~ 710 (964)
+..-+..+...|..+.
T Consensus 19 y~~q~~~Wq~sy~~Lq 34 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQ 34 (70)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 312
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.94 E-value=5.2e+02 Score=22.32 Aligned_cols=64 Identities=30% Similarity=0.261 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy3622 373 AKALRLELENKRLLSTIESLHENAFYE-SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYES 437 (964)
Q Consensus 373 ~r~~kLe~E~k~L~~~ie~l~~~~~~e-~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~ 437 (964)
..+.+|.+||=.|.-.|--|.+. +.. .......+.+++-.|..++..++.++........++++
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~-l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEER-LQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666665 332 23345556666666666666666666665555444443
No 313
>KOG0999|consensus
Probab=21.51 E-value=1.4e+03 Score=27.30 Aligned_cols=57 Identities=28% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ 431 (964)
Q Consensus 374 r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~ 431 (964)
...+|..++.+|...++........... .-..+=.++..|+.+++.+..+.+..+..
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAe-yGL~lLeeK~~Lkqq~eEleaeyd~~R~E 65 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAE-YGLELLEEKEDLKQQLEELEAEYDLARTE 65 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888876665332222 22334447778888888877777766554
No 314
>KOG4005|consensus
Probab=21.40 E-value=6.3e+02 Score=26.75 Aligned_cols=62 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy3622 762 RAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISA 823 (964)
Q Consensus 762 ~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~ 823 (964)
.+...++..++.+|..+...+..+...|+...+.|-.+...+...+..+..+|..++++++.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
No 315
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.26 E-value=8.5e+02 Score=25.34 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHhHhhHH----HHHHHHHHHH-hHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 488 MEINKQLSNNTE----EINEYKTKLA-NCEKEIKKCKEA---------------LESKAESLDKLTNKLESMEKEHVSLT 547 (964)
Q Consensus 488 ~~~l~~el~~l~----~~~~Le~~~~-~LE~E~~~l~e~---------------lee~e~~le~~e~~l~rle~e~~~L~ 547 (964)
...|+.-+..|. .+..+++.+| .||+|+..++-+ ...+...|.+-+.++..++.++..|.
T Consensus 5 v~~LQ~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWE 84 (205)
T PF12240_consen 5 VERLQQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWE 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q psy3622 548 KQI 550 (964)
Q Consensus 548 ~~~ 550 (964)
..+
T Consensus 85 qkY 87 (205)
T PF12240_consen 85 QKY 87 (205)
T ss_pred HHH
No 316
>KOG2991|consensus
Probab=21.25 E-value=1e+03 Score=25.51 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy3622 465 DELDNMNREKQKLEW 479 (964)
Q Consensus 465 ~~~~~l~~e~~~l~~ 479 (964)
.+++.|..+++.+-+
T Consensus 217 AKCR~L~qENeElG~ 231 (330)
T KOG2991|consen 217 AKCRTLQQENEELGH 231 (330)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555555444
No 317
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.17 E-value=9.1e+02 Score=24.80 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=14.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy3622 871 EKNFSDKLNNLHRQKEKLEEKIMEHYRK 898 (964)
Q Consensus 871 ~~~~~~k~~~l~~q~e~l~~~l~e~y~~ 898 (964)
...+....+++.--+..+..-+...|++
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k~~~ 171 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKKFGM 171 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcCC
Confidence 3334455555555555555555544443
No 318
>PF15294 Leu_zip: Leucine zipper
Probab=20.90 E-value=1.1e+03 Score=25.79 Aligned_cols=45 Identities=33% Similarity=0.447 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEG 812 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~ 812 (964)
+..++.+|+.+++.++..+..++......-.+.+.++.++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555555555555555555555555555555555
No 319
>KOG3631|consensus
Probab=20.87 E-value=66 Score=34.33 Aligned_cols=67 Identities=19% Similarity=0.372 Sum_probs=43.1
Q ss_pred hhhhhHHHHHhhcCCCCCCC---CcccccccHHHHHHHHHhhCCCCCCCCCCCCCc-chHHHhhhHHHHHHHHHH
Q psy3622 14 FLKGPLVTWLLSCLSNPDRL---SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLR-NASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 14 ~~~~~L~~W~~tf~~~~~~~---~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~-~~~~~~~Nl~~i~~~i~~ 84 (964)
-+..-|+.|||.... +..| .--+||.||.||..++..+..--..-. .+. .-....+-|..++..+-+
T Consensus 90 el~kvLi~WiN~~L~-~erIvVr~LeEDlfDGqilqkL~ekL~~~klev~---evtqse~~QkqKLq~Vleavnr 160 (365)
T KOG3631|consen 90 ELVKVLIDWINDVLV-PERIVVRSLEEDLFDGQILQKLFEKLAALKLEVA---EVTQSEIGQKQKLQTVLEAVNR 160 (365)
T ss_pred HHHHHHHHHHHHhhc-chhhhHHhhHHhhhhhHHHHHHHHHHHhhhccch---hhhhhhHHHHHHHHHHHHHHHH
Confidence 356789999998764 4333 234799999999999998876443221 111 123445667777766644
No 320
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.69 E-value=9.7e+02 Score=24.95 Aligned_cols=7 Identities=43% Similarity=0.824 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy3622 563 LKREMDE 569 (964)
Q Consensus 563 lE~e~~~ 569 (964)
++.++..
T Consensus 194 ~e~~l~~ 200 (221)
T PF04012_consen 194 LEAELEE 200 (221)
T ss_pred HHHHHHH
Confidence 3333333
No 321
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=20.66 E-value=1e+03 Score=25.32 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred hHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 643 DESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRD 722 (964)
Q Consensus 643 ~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~ 722 (964)
+.++-.+..|.-++.||+-|...-..-+.+||+...+ -..++.+++..|+++.+.+....-...-
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dE---------------a~~L~~~L~~kl~eLqkk~~Ea~lAVtP 76 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDE---------------ATRLQDELQGKLEELQKKQHEANLAVTP 76 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhhHhhccch
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 723 VKNENKTVKEQYSQLKVSYESLQAEM 748 (964)
Q Consensus 723 Le~e~r~l~~~~~~Le~~~~~L~~e~ 748 (964)
|+.....+-.+.++--.-+..|-.++
T Consensus 77 LKak~AslV~kc~eRn~Li~~llqel 102 (277)
T PF15030_consen 77 LKAKLASLVQKCRERNRLITHLLQEL 102 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 322
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=20.46 E-value=9.5e+02 Score=24.76 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q psy3622 797 HMEKRKLTLSLT 808 (964)
Q Consensus 797 ~~e~~~lk~~l~ 808 (964)
+.+...|..+..
T Consensus 153 r~ea~aL~~e~~ 164 (192)
T PF11180_consen 153 RQEAQALEAERR 164 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 323
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=20.31 E-value=1.2e+03 Score=25.83 Aligned_cols=19 Identities=26% Similarity=0.080 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy3622 658 TSQSQISSLTSQHTALQLA 676 (964)
Q Consensus 658 ~L~sq~~sl~~q~~~Lq~~ 676 (964)
.++.++..|..|..-.|..
T Consensus 4 d~QN~N~EL~kQiEIcqEE 22 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEE 22 (351)
T ss_pred hhhhhcHHHHHHHHHHHHH
Confidence 3444444444444444433
No 324
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=20.23 E-value=92 Score=30.35 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHhhcCC--CCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHH
Q psy3622 20 VTWLLSCLS--NPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSL 85 (964)
Q Consensus 20 ~~W~~tf~~--~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~y 85 (964)
-.||-+-.. ..+|.+=++-|-|||+|..||...||-- -.|+.+ .-+-....|+...+..++.|
T Consensus 19 ~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~--I~yKeS-kmpFVQmenIs~Fin~~~k~ 83 (178)
T COG5199 19 TLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLD--IKYKES-KMPFVQMENISSFINGLKKL 83 (178)
T ss_pred HHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCccc--ceeccc-CCceeeHHHHHHHHHHHHHh
Confidence 679887642 2344666788999999999999999854 334322 11445667777777666554
No 325
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.10 E-value=1.1e+03 Score=25.55 Aligned_cols=54 Identities=24% Similarity=0.480 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHH
Q psy3622 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNL 456 (964)
Q Consensus 403 k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~ 456 (964)
++..+.++++.++.+|+.|...++.......++...+.+...+...++..++.+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555554444
Done!