Query psy3622
Match_columns 964
No_of_seqs 502 out of 1170
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:18:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wix_A HOOK homolog 1, RSGI RU 100.0 1.6E-38 5.5E-43 313.6 11.7 145 13-162 8-159 (164)
2 1c1g_A Tropomyosin; contractIl 98.4 0.0048 1.7E-07 65.3 43.2 14 511-524 11-24 (284)
3 1c1g_A Tropomyosin; contractIl 98.3 0.006 2.1E-07 64.5 40.0 23 871-893 260-282 (284)
4 1i84_S Smooth muscle myosin he 98.0 1.3E-05 4.5E-10 103.4 10.5 26 404-429 1027-1052(1184)
5 1i84_S Smooth muscle myosin he 97.9 2.5E-05 8.5E-10 100.8 11.0 50 502-551 1084-1133(1184)
6 2v71_A Nuclear distribution pr 96.8 0.25 8.5E-06 48.8 21.9 39 645-683 8-46 (189)
7 2v71_A Nuclear distribution pr 96.7 0.36 1.2E-05 47.7 22.7 52 806-857 89-143 (189)
8 3o0z_A RHO-associated protein 96.5 0.68 2.3E-05 44.6 23.4 50 780-829 86-135 (168)
9 2ee7_A Sperm flagellar protein 96.5 0.0047 1.6E-07 57.4 6.9 66 13-79 14-80 (127)
10 3na7_A HP0958; flagellar bioge 96.3 0.43 1.5E-05 50.2 22.2 65 502-572 100-164 (256)
11 2fxo_A Myosin heavy chain, car 95.9 0.66 2.3E-05 43.3 18.7 26 502-527 100-125 (129)
12 1wyo_A Protein EB3, microtubul 95.8 0.014 4.6E-07 56.3 6.8 68 15-84 23-91 (159)
13 2fxo_A Myosin heavy chain, car 95.7 0.73 2.5E-05 43.0 17.9 107 381-488 14-120 (129)
14 2qjz_A Microtubule-associated 95.5 0.024 8.4E-07 52.3 6.9 66 17-84 8-74 (123)
15 3o0z_A RHO-associated protein 95.3 2.3 7.8E-05 41.0 23.7 117 716-842 39-159 (168)
16 3na7_A HP0958; flagellar bioge 95.3 3.5 0.00012 43.2 24.0 17 835-851 148-164 (256)
17 2yrn_A Neuron navigator 2 isof 95.1 0.018 6E-07 54.2 4.8 68 16-84 20-91 (129)
18 1wjo_A T-plastin; CH domain, a 94.9 0.05 1.7E-06 50.3 7.0 77 17-98 10-92 (124)
19 2dfs_A Myosin-5A; myosin-V, in 94.7 0.47 1.6E-05 60.1 17.7 30 406-435 918-947 (1080)
20 2vzc_A Alpha-parvin; membrane, 94.2 0.07 2.4E-06 50.1 6.3 69 16-84 24-95 (131)
21 2dfs_A Myosin-5A; myosin-V, in 93.4 1.7 6E-05 54.9 19.0 22 107-128 163-184 (1080)
22 3vkg_A Dynein heavy chain, cyt 93.4 12 0.0004 52.5 28.1 23 562-584 2081-2103(3245)
23 4abo_I MAL3, microtubule integ 93.3 0.13 4.4E-06 48.4 6.3 66 17-84 9-74 (145)
24 1wyp_A Calponin 1; CH domain, 92.7 0.21 7.2E-06 47.2 7.0 70 13-84 16-85 (136)
25 2r8u_A Microtubule-associated 92.7 0.13 4.6E-06 53.6 6.0 64 17-82 18-82 (268)
26 2qjx_A Protein BIM1; calponin 92.6 0.17 5.7E-06 46.9 5.9 65 18-84 14-78 (127)
27 2l3g_A RHO guanine nucleotide 91.9 0.25 8.6E-06 45.9 6.4 67 18-85 16-90 (126)
28 1h67_A Calponin alpha; cytoske 91.8 0.16 5.6E-06 45.9 4.8 66 17-84 6-71 (108)
29 1wyr_A RHO guanine nucleotide 91.5 0.2 6.9E-06 46.3 5.2 67 18-85 10-84 (121)
30 2v4h_A NF-kappa-B essential mo 91.1 3 0.0001 36.9 11.8 71 730-800 36-106 (110)
31 2wa7_A Filamin-B; disease muta 91.0 0.25 8.6E-06 51.7 6.0 69 16-84 22-92 (245)
32 3vkg_A Dynein heavy chain, cyt 90.9 46 0.0016 46.8 29.0 48 113-160 1513-1572(3245)
33 1wyn_A Calponin-2; CH domain, 90.8 0.73 2.5E-05 44.0 8.5 68 15-84 18-85 (146)
34 3hoc_A Filamin-A; calponin hom 90.8 0.3 1E-05 51.8 6.4 68 17-84 50-119 (272)
35 3u1c_A Tropomyosin alpha-1 cha 90.5 8.9 0.0003 33.9 15.1 51 500-550 45-95 (101)
36 4b7l_A Filamin-B; structural p 90.4 0.37 1.3E-05 53.1 6.9 68 17-84 20-89 (347)
37 4gkw_A Spindle assembly abnorm 89.9 11 0.00037 34.1 19.3 79 512-597 59-137 (167)
38 2ocy_A RAB guanine nucleotide 89.5 15 0.0005 35.0 20.0 81 372-452 12-94 (154)
39 1sh5_A Plectin 1, PLTN, PCN; a 88.9 0.48 1.6E-05 49.5 6.1 72 10-84 8-86 (245)
40 3ol1_A Vimentin; structural ge 88.8 8.9 0.0003 35.0 13.8 12 835-846 106-117 (119)
41 2v66_B Nuclear distribution pr 88.6 13 0.00045 33.2 17.0 64 765-828 37-100 (111)
42 1p2x_A RNG2 protein, RAS GTPas 88.5 2.1 7.2E-05 41.4 9.9 66 17-84 14-82 (159)
43 1ujo_A Transgelin; CH domain, 87.9 0.73 2.5E-05 43.9 6.1 71 13-84 8-87 (144)
44 3u1c_A Tropomyosin alpha-1 cha 87.7 14 0.00049 32.6 15.5 84 766-849 12-98 (101)
45 1wku_A Alpha-actinin 3; calpon 86.4 0.64 2.2E-05 48.9 5.2 68 15-84 28-97 (254)
46 2jee_A YIIU; FTSZ, septum, coi 86.3 12 0.00042 31.4 11.7 47 780-826 30-76 (81)
47 1dxx_A Dystrophin; structural 86.1 0.63 2.1E-05 48.7 5.0 69 13-84 15-86 (246)
48 3tnu_B Keratin, type II cytosk 86.0 13 0.00046 34.3 13.5 71 781-858 40-110 (129)
49 1wym_A Transgelin-2; CH domain 85.5 3.1 0.00011 40.0 9.2 69 14-84 17-94 (155)
50 3ol1_A Vimentin; structural ge 85.0 23 0.00077 32.3 14.5 35 512-546 68-102 (119)
51 2eqb_B RAB guanine nucleotide 84.7 19 0.00066 31.3 13.5 54 371-425 10-63 (97)
52 1aoa_A T-fimbrin; actin-bindin 84.7 1.1 3.6E-05 47.8 6.0 69 16-84 26-106 (275)
53 3tnu_A Keratin, type I cytoske 84.5 13 0.00045 34.5 12.7 72 780-858 41-112 (131)
54 2d87_A Smoothelin splice isofo 83.9 2.2 7.6E-05 39.6 7.0 63 17-83 10-75 (128)
55 3u59_A Tropomyosin beta chain; 83.8 22 0.00076 31.3 15.1 51 500-550 45-95 (101)
56 3u59_A Tropomyosin beta chain; 83.3 23 0.00079 31.1 15.4 83 767-849 13-98 (101)
57 1p5s_A RAS GTPase-activating-l 83.3 3.4 0.00012 41.6 8.7 69 15-84 56-126 (203)
58 2eqb_B RAB guanine nucleotide 82.8 23 0.00079 30.8 12.3 14 511-524 81-94 (97)
59 2efr_A General control protein 82.7 34 0.0012 32.6 23.1 35 385-420 26-60 (155)
60 3jsv_C NF-kappa-B essential mo 82.6 12 0.0004 32.3 10.2 68 737-804 21-88 (94)
61 3a7p_A Autophagy protein 16; c 81.2 11 0.00038 35.5 10.5 85 179-263 26-120 (152)
62 2d89_A EHBP1 protein; all alph 81.0 6 0.00021 36.1 8.7 61 17-81 12-75 (119)
63 3f7p_A Plectin-1; plakin, hemi 80.9 2.2 7.4E-05 45.7 6.5 73 9-84 68-142 (296)
64 2wa7_A Filamin-B; disease muta 80.1 3.8 0.00013 42.6 8.0 60 17-81 146-207 (245)
65 2efr_A General control protein 79.7 43 0.0015 31.9 23.7 33 421-453 26-58 (155)
66 3cvf_A Homer-3, homer protein 79.6 10 0.00036 31.7 8.7 58 482-539 16-74 (79)
67 1aoa_A T-fimbrin; actin-bindin 77.9 1.6 5.6E-05 46.3 4.4 65 17-82 171-244 (275)
68 1ic2_A Tropomyosin alpha chain 76.4 33 0.0011 28.8 11.3 62 503-574 3-64 (81)
69 2d88_A Protein mical-3; all al 76.0 11 0.00036 34.6 8.8 63 16-82 11-76 (121)
70 3tnu_A Keratin, type I cytoske 76.0 34 0.0012 31.6 12.4 16 508-523 86-101 (131)
71 2v66_B Nuclear distribution pr 75.4 45 0.0015 29.8 17.1 42 703-744 41-89 (111)
72 1sjj_A Actinin; 3-helix bundle 75.1 2.4 8.2E-05 52.7 5.5 66 17-84 11-78 (863)
73 1wyl_A NEDD9 interacting prote 74.8 3.9 0.00013 37.3 5.4 61 17-81 10-73 (116)
74 3i6x_A P195, RAS GTPase-activa 74.8 2.2 7.6E-05 42.6 4.1 41 18-58 51-93 (193)
75 1wku_A Alpha-actinin 3; calpon 73.9 13 0.00045 38.7 10.0 62 17-82 143-207 (254)
76 3hnw_A Uncharacterized protein 73.5 57 0.002 30.4 13.2 29 785-813 104-132 (138)
77 3cve_A Homer protein homolog 1 72.1 40 0.0014 27.7 10.5 27 510-536 39-65 (72)
78 1sh5_A Plectin 1, PLTN, PCN; a 71.3 10 0.00036 39.2 8.5 62 17-82 136-200 (245)
79 1pxy_A Fimbrin-like protein; c 71.2 4.7 0.00016 46.7 6.4 67 16-83 278-347 (506)
80 3tnu_B Keratin, type II cytosk 71.2 63 0.0022 29.6 14.1 11 510-520 86-96 (129)
81 3i00_A HIP-I, huntingtin-inter 70.7 36 0.0012 31.0 10.7 41 706-749 17-57 (120)
82 1bkr_A Spectrin beta chain; fi 70.4 6.6 0.00023 35.2 5.8 62 17-82 6-70 (109)
83 3hoc_A Filamin-A; calponin hom 69.5 6.7 0.00023 41.4 6.5 61 16-82 172-235 (272)
84 1pxy_A Fimbrin-like protein; c 68.2 14 0.00046 42.8 9.4 65 17-81 400-469 (506)
85 1wyq_A Spectrin beta chain, br 68.1 4.2 0.00014 37.7 4.1 61 17-81 10-73 (127)
86 2e7s_A RAB guanine nucleotide 67.7 31 0.001 31.9 9.6 39 414-452 44-82 (135)
87 1ic2_A Tropomyosin alpha chain 67.3 55 0.0019 27.4 11.0 57 768-824 11-67 (81)
88 1rt8_A Fimbrin; filamentous ac 67.0 6.3 0.00021 45.7 6.2 67 17-84 288-361 (513)
89 2v4h_A NF-kappa-B essential mo 65.4 73 0.0025 28.2 11.9 30 783-812 75-104 (110)
90 2e7s_A RAB guanine nucleotide 64.7 30 0.001 32.0 8.9 45 506-550 39-83 (135)
91 4b7l_A Filamin-B; structural p 64.7 10 0.00034 41.6 7.0 60 17-82 143-205 (347)
92 2rr8_A Iqgap1 protein; F-actin 64.3 6.4 0.00022 39.2 4.8 45 12-57 24-70 (190)
93 1rt8_A Fimbrin; filamentous ac 63.5 6 0.0002 45.9 5.2 65 18-82 412-481 (513)
94 3s4r_A Vimentin; alpha-helix, 62.5 76 0.0026 27.4 13.0 12 735-746 26-37 (93)
95 3swk_A Vimentin; cytoskeleton, 58.2 86 0.0029 26.6 11.8 33 760-792 46-78 (86)
96 1bhd_A Utrophin; calponin homo 57.7 4.7 0.00016 36.8 2.3 60 17-80 11-73 (118)
97 3f7p_A Plectin-1; plakin, hemi 57.0 5.9 0.0002 42.3 3.3 61 17-81 192-255 (296)
98 3bas_A Myosin heavy chain, str 57.0 92 0.0031 26.6 11.6 35 415-449 20-54 (89)
99 1x79_B RAB GTPase binding effe 56.8 1.1E+02 0.0037 27.4 12.8 20 837-856 84-103 (112)
100 1x79_B RAB GTPase binding effe 56.7 1.1E+02 0.0037 27.3 13.6 32 768-799 75-106 (112)
101 3cve_A Homer protein homolog 1 56.2 83 0.0028 25.8 10.1 51 502-552 3-53 (72)
102 1dxx_A Dystrophin; structural 53.0 7.7 0.00026 40.2 3.3 43 16-58 137-182 (246)
103 3s9g_A Protein hexim1; cyclin 51.0 64 0.0022 27.8 7.9 48 501-548 39-86 (104)
104 1wt6_A Myotonin-protein kinase 49.8 1.1E+02 0.0039 25.4 10.1 28 750-777 18-45 (81)
105 2ocy_A RAB guanine nucleotide 49.5 1.8E+02 0.006 27.6 21.3 6 767-772 83-88 (154)
106 1wlq_A Geminin; coiled-coil; 2 48.6 76 0.0026 26.6 7.8 48 234-281 33-80 (83)
107 3qh9_A Liprin-beta-2; coiled-c 47.1 1.2E+02 0.0043 25.2 9.4 42 794-835 22-63 (81)
108 3i00_A HIP-I, huntingtin-inter 46.4 1.7E+02 0.0058 26.5 10.7 21 798-818 40-60 (120)
109 2b9c_A Striated-muscle alpha t 45.8 2E+02 0.0067 27.1 13.3 38 508-545 54-91 (147)
110 1gk4_A Vimentin; intermediate 45.8 1.3E+02 0.0046 25.2 11.2 49 502-550 29-77 (84)
111 3nmd_A CGMP dependent protein 44.8 72 0.0025 26.1 7.0 44 221-264 22-65 (72)
112 3ky9_A Proto-oncogene VAV; cal 39.9 30 0.001 40.6 6.0 39 20-58 11-59 (587)
113 3s9g_A Protein hexim1; cyclin 38.8 1.9E+02 0.0065 24.9 9.7 16 767-782 76-91 (104)
114 1x8y_A Lamin A/C; structural p 38.7 1.8E+02 0.0061 24.6 9.7 24 835-858 40-63 (86)
115 1x8y_A Lamin A/C; structural p 37.6 1.7E+02 0.0058 24.7 8.8 48 504-551 33-80 (86)
116 1go4_E MAD1 (mitotic arrest de 36.2 1.7E+02 0.0059 25.5 8.6 8 469-476 23-30 (100)
117 3mq7_A Bone marrow stromal ant 35.4 2.4E+02 0.0082 25.1 12.8 27 559-585 72-98 (121)
118 4e61_A Protein BIM1; EB1-like 35.0 2.4E+02 0.0081 24.9 9.3 51 244-297 9-59 (106)
119 3vp9_A General transcriptional 34.7 56 0.0019 28.1 5.1 47 802-848 40-86 (92)
120 1deq_A Fibrinogen (alpha chain 34.3 4.8E+02 0.016 28.3 15.0 23 785-807 135-157 (390)
121 1t3j_A Mitofusin 1; coiled coi 33.9 1.4E+02 0.0049 25.8 7.6 27 760-786 68-94 (96)
122 3mq7_A Bone marrow stromal ant 33.9 2.6E+02 0.0087 25.0 12.6 33 790-822 70-102 (121)
123 2i1j_A Moesin; FERM, coiled-co 33.3 96 0.0033 36.2 8.8 45 435-479 340-384 (575)
124 4h22_A Leucine-rich repeat fli 33.3 2.5E+02 0.0084 24.6 10.3 61 502-562 19-79 (103)
125 1ci6_A Transcription factor AT 33.0 1.8E+02 0.0062 23.0 7.7 44 221-265 13-56 (63)
126 3s4r_A Vimentin; alpha-helix, 32.7 2.4E+02 0.0081 24.2 11.7 8 658-665 13-20 (93)
127 2i1j_A Moesin; FERM, coiled-co 32.7 54 0.0018 38.3 6.5 23 409-431 335-357 (575)
128 1go4_E MAD1 (mitotic arrest de 32.2 96 0.0033 27.1 6.3 17 378-394 73-89 (100)
129 3mov_A Lamin-B1; LMNB1, B-type 31.3 1.7E+02 0.0059 25.3 7.9 10 511-520 49-58 (95)
130 2oqq_A Transcription factor HY 29.1 1.4E+02 0.0046 21.6 5.4 30 720-749 5-34 (42)
131 2ke4_A CDC42-interacting prote 28.5 2.9E+02 0.01 24.0 9.0 77 408-486 14-90 (98)
132 3mq9_A Bone marrow stromal ant 28.0 6.5E+02 0.022 27.9 15.7 17 559-575 444-460 (471)
133 2wvr_A Geminin; DNA replicatio 27.3 2.5E+02 0.0084 27.6 8.9 50 234-283 110-159 (209)
134 3nmd_A CGMP dependent protein 24.9 2.6E+02 0.0087 22.9 7.1 41 227-267 21-61 (72)
135 3tul_A Cell invasion protein S 24.4 4.3E+02 0.015 24.5 11.3 21 731-751 75-95 (158)
136 2yy0_A C-MYC-binding protein; 24.2 1.3E+02 0.0045 23.0 5.1 28 704-731 19-46 (53)
137 2zxx_A Geminin; coiled-coil, c 24.0 2.7E+02 0.0093 23.2 7.3 42 235-276 30-71 (79)
138 1deb_A APC protein, adenomatou 23.7 2.3E+02 0.008 21.2 8.1 35 705-739 4-38 (54)
139 1gk4_A Vimentin; intermediate 23.7 3.2E+02 0.011 22.8 12.1 24 835-858 38-61 (84)
140 2b9c_A Striated-muscle alpha t 23.3 4.6E+02 0.016 24.5 13.2 45 502-546 76-120 (147)
141 3cl3_D NF-kappa-B essential mo 22.9 1.9E+02 0.0064 26.3 6.6 10 730-739 28-37 (130)
142 2zqm_A Prefoldin beta subunit 22.9 3.8E+02 0.013 23.4 12.5 89 722-810 3-110 (117)
143 2w6a_A ARF GTPase-activating p 21.8 2.8E+02 0.0096 21.6 6.3 38 397-434 22-59 (63)
144 3jsv_C NF-kappa-B essential mo 21.3 3.9E+02 0.013 22.9 10.6 14 794-807 64-77 (94)
145 2yy0_A C-MYC-binding protein; 20.9 1.3E+02 0.0046 22.9 4.6 35 207-241 15-49 (53)
No 1
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1
Probab=100.00 E-value=1.6e-38 Score=313.57 Aligned_cols=145 Identities=26% Similarity=0.417 Sum_probs=134.8
Q ss_pred HhhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCC----CCCCc-chHHHhhhHHHHHHHHHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSV----VPSLR-NASVRIKNFNTIVKNIKSLYE 87 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~----~~~~~-~~~~~~~Nl~~i~~~i~~yy~ 87 (964)
.++++|||.||+||.. +.|+.+++||+||++|++||++|||+||+++| ..+++ ||++|++||++|+++|.+||+
T Consensus 8 ~~~~~aLl~W~~tf~~-~~~~~~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~Yy~ 86 (164)
T 1wix_A 8 LPLCDSLIIWLQTFKT-ASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYH 86 (164)
T ss_dssp CHHHHHHHHHHTTCCC-SSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC-CCCcCcHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999985 67899999999999999999999999999866 33454 699999999999999999999
Q ss_pred HHhhhhcc--cCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHHHHHHhhhhcc
Q psy3622 88 EELCQIVL--VLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQ 162 (964)
Q Consensus 88 e~l~~~~~--~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~~~Iq~v~~~~ 162 (964)
++|++.+. ++||+..||++|+ +.+|.+|+.|||||||+||+|+.||++||+|++++|++||.+||+||...
T Consensus 87 e~L~~~i~~~~~pd~~~Ia~~~d----~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~im~~Iqev~~~~ 159 (164)
T 1wix_A 87 EFLGQQISEELIPDLNQITECAD----PVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKS 159 (164)
T ss_dssp TTTCCCCCTTTCCCHHHHHTTCC----HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC
T ss_pred HHhcCcccccCCCCHHHHHhCCC----HHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHHHHHHccc
Confidence 99999874 6899999999998 89999999999999999999999999999999999999999999999864
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.35 E-value=0.0048 Score=65.27 Aligned_cols=14 Identities=0% Similarity=0.060 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 511 CEKEIKKCKEALES 524 (964)
Q Consensus 511 LE~E~~~l~e~lee 524 (964)
+..++..+...+.+
T Consensus 11 l~~~~~~~~~~~~~ 24 (284)
T 1c1g_A 11 LKLDKENALDRADE 24 (284)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 33333333333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.31 E-value=0.006 Score=64.51 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 871 EKNFSDKLNNLHRQKEKLEEKIM 893 (964)
Q Consensus 871 ~~~~~~k~~~l~~q~e~l~~~l~ 893 (964)
...+...+..+...++++.+.|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 260 LYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666666666666666554
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.97 E-value=1.3e-05 Score=103.40 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 404 ILELEKEKKKLSLQVEDLEETKRRLS 429 (964)
Q Consensus 404 ~~~LEkek~~L~~eie~l~~~le~~~ 429 (964)
+..+++.+..+..++..+...+....
T Consensus 1027 ~~~lek~~~~le~el~ele~~le~~e 1052 (1184)
T 1i84_S 1027 AKNLTKLKNKHESMISELEVRLKKEE 1052 (1184)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.89 E-value=2.5e-05 Score=100.81 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e 551 (964)
..++..+..++.++..++..+++....+..++.++..++.++..+..+++
T Consensus 1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLe 1133 (1184)
T 1i84_S 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133 (1184)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444444444455555555554444433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.79 E-value=0.25 Score=48.83 Aligned_cols=39 Identities=8% Similarity=-0.055 Sum_probs=25.4
Q ss_pred hhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 645 SSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA 683 (964)
Q Consensus 645 Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le~e 683 (964)
...+++.+......+..+...+...+.+++.....++.+
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777777777777766666665
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.75 E-value=0.36 Score=47.68 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 806 SLTELEGELANRDDAISALSVQLSKYQNK---LEDDRRKLMEHVTNLLAQYHELL 857 (964)
Q Consensus 806 ~l~~le~El~~~~e~~~~L~~~~~~L~~~---LEee~r~L~~q~~~L~~q~~~Ll 857 (964)
.++.++.++..++..+..+...+.+|... |+-..|....-+..+...+...+
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444455544555555555554444 56566666666666665544333
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.47 E-value=0.68 Score=44.60 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLS 829 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~ 829 (964)
......+..+++....|..+++.++..+..+..+...+.+++..+.-+.+
T Consensus 86 ~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 86 GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555666666666666665555555555555555554433
No 9
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.47 E-value=0.0047 Score=57.45 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=49.6
Q ss_pred HhhhhhHHHHHhhcCCCCCCCC-cccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSNPDRLS-DYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIV 79 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~~~-~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~ 79 (964)
+-...-|..||++++. +.+.. .--|++||+++++|++..-|...+-.-..+.+....|..||..+-
T Consensus 14 ~ee~~el~~WL~~l~L-s~~~rn~rRDFSdG~lvAEIl~~y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln 80 (127)
T 2ee7_A 14 EEALHQLYLWVDNIPL-SRPKRNLSRDFSDGVLVAEVIKFYFPKMVEMHNYVPANSLQQKLSNWGHLN 80 (127)
T ss_dssp HHHHHHHHHHHHHSCC-SCCSSCHHHHHTTSHHHHHHHHHHCTTTCCCSSCCCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CCCCCchhhhccchhHHHHHHHHHCcCcccccccCCCCcHHHHHHhHHHHH
Confidence 3334567999999874 55544 346899999999999999998655555555445789999999885
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.33 E-value=0.43 Score=50.24 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~ 572 (964)
..+......+|.++..+.+.++.....+......+..+..++...+..++. .+.+++.+...+..
T Consensus 100 e~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~------~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 100 DIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN------EVKNIKETQQIIFK 164 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 444555566666777777777777777777777777777777766666665 55556555555543
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.92 E-value=0.66 Score=43.29 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAE 527 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~ 527 (964)
..|...++.++.++..++.++++.+.
T Consensus 100 ~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 100 AELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777777776666543
No 12
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.85 E-value=0.014 Score=56.28 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=50.9
Q ss_pred hhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCC-CCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 15 LKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQ-SVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 15 ~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~-~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
-..-|+.|||++.. .++..+++|.||+++.+++.-|-|...+. .++.+++.-..-+.|++.+...+..
T Consensus 23 sr~ElL~WIN~~L~--~~~~kiE~L~~GaayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k 91 (159)
T 1wyo_A 23 SRHDMLAWVNDSLH--LNYTKIEQLCSGAAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKK 91 (159)
T ss_dssp CHHHHHHHHHHHSC--CCCSSGGGGGGCHHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHC--CCCchhhhcCccHHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHH
Confidence 34568999998864 45778899999999999999999977553 3333444445667888888777665
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.69 E-value=0.73 Score=43.00 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy3622 381 ENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQI 460 (964)
Q Consensus 381 E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~ 460 (964)
+.+.+...+..+... +.........|+.....+..+..+|...+...+...++.+..+..+...+..|...+.++...+
T Consensus 14 E~~~~~eel~~lke~-l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rl 92 (129)
T 2fxo_A 14 EMASMKEEFTRLKEA-LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRL 92 (129)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 3334445788888889999999999999999999889999999888888888888887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy3622 461 QVRNDELDNMNREKQKLEWKNKELELNM 488 (964)
Q Consensus 461 ~~le~~~~~l~~e~~~l~~~~eelEr~~ 488 (964)
.+.+..+..|.....++...+.+|+...
T Consensus 93 eeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 93 EDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777666665555543
No 14
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=95.50 E-value=0.024 Score=52.33 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=50.0
Q ss_pred hhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCC-CCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQ-SVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~-~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.-|+.|||+... .++..+++|.||+++.++|.-|=|...+. .++.+++.-..-+.|++.+-..+..
T Consensus 8 ~ElL~WIN~~L~--~~~~kiE~L~~Ga~yCqlmd~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k 74 (123)
T 2qjz_A 8 HDMLAWINESLQ--LNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKR 74 (123)
T ss_dssp HHHHHHHHHHHT--CCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--CCCchHHHcCchHHHHHHHHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 357999998864 45778899999999999999999987654 2333444455667888888777655
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.26 E-value=2.3 Score=40.97 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 716 LKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQ----LKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQE 791 (964)
Q Consensus 716 Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~----L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~ 791 (964)
+......++..+++|.+++..|+.....|+.+... |..|.+........+..++..+..|..+.++++..+.....
T Consensus 39 l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~ 118 (168)
T 3o0z_A 39 MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEG 118 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555554444433333333322 23333333333334444555554444444555555544444
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 792 EHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKL 842 (964)
Q Consensus 792 e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L 842 (964)
+...|.-.+..+....+.++-+++ .++..+++.++-+.+.+
T Consensus 119 e~r~L~Ekl~~lEKe~a~~eid~~----------~eLKalQ~~~eqE~~~H 159 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEKNNLEIDLN----------YKLKSLQQRLEQEVNEH 159 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHHHHHHHH
Confidence 444444444444443333333222 44555555555554433
No 16
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.25 E-value=3.5 Score=43.15 Aligned_cols=17 Identities=12% Similarity=0.327 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3622 835 LEDDRRKLMEHVTNLLA 851 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~ 851 (964)
++.....+..++..+..
T Consensus 148 ~~~~~~e~~~e~~~l~~ 164 (256)
T 3na7_A 148 VENEVKNIKETQQIIFK 164 (256)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444433
No 17
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.14 E-value=0.018 Score=54.20 Aligned_cols=68 Identities=18% Similarity=0.357 Sum_probs=47.9
Q ss_pred hhhHHHHHhhcCC-C--CCCCCc-ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLS-N--PDRLSD-YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 16 ~~~L~~W~~tf~~-~--~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
...+..|||+... . +.++.+ ++||.||++|..++..|.|...+ .+...+.+..-++.|+...++.+..
T Consensus 20 ~~~f~~WIN~~L~~~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~l~-~~~~~p~~~~~~~eNv~~aL~~~~~ 91 (129)
T 2yrn_A 20 KRIYTDWANHYLAKSGHKRLIRDLQQDVTDGVLLAQIIQVVANEKIE-DINGCPKNRSQMIENIDACLNFLAA 91 (129)
T ss_dssp HHHHHHHHHHHHHHTCCCSCCSCHHHHSSSSHHHHHHHHHHTTCCCT-TCCSSCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCccchhHHHHcccHHHHHHHHHHHhcCCcc-cccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3466999999632 1 123544 58999999999999999998765 3433223344677888888887764
No 18
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=94.90 E-value=0.05 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=55.5
Q ss_pred hhHHHHHhhcC---CCCCCCCccc--ccccHHHHHHHHHhhCCCCCCCCCCCCCc-chHHHhhhHHHHHHHHHHHHHHHh
Q psy3622 17 GPLVTWLLSCL---SNPDRLSDYE--DLADGIYIHEVYLLIDPEPVHQSVVPSLR-NASVRIKNFNTIVKNIKSLYEEEL 90 (964)
Q Consensus 17 ~~L~~W~~tf~---~~~~~~~~~~--dL~dG~~l~~vl~~iDp~~~~~~~~~~~~-~~~~~~~Nl~~i~~~i~~yy~e~l 90 (964)
..|+.|+|... .....+.+|. ++.||++|..+|+.|.|...+-....... +-..+..|.+..+.-... +
T Consensus 10 ~~ll~W~N~kl~~~g~~~~I~~F~d~sl~dG~~~l~Ll~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~Ark-----l 84 (124)
T 1wjo_A 10 DIIVNWVNRTLSEAGKSTSIQSFKDKTISSSLAVVDLIDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARR-----I 84 (124)
T ss_dssp HHHHHHHHHHHHHHTCSCCCSCTTCTTGGGTHHHHHHHHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHH-----T
T ss_pred HHHHHHHHHHHHhcCCCcccCCCCcchhhhhHHHHHHHHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHH-----c
Confidence 46899999763 2234688987 99999999999999999998666433222 346788899988876643 6
Q ss_pred hhhcccCC
Q psy3622 91 CQIVLVLP 98 (964)
Q Consensus 91 ~~~~~~~p 98 (964)
|-.++-.|
T Consensus 85 G~~~~l~p 92 (124)
T 1wjo_A 85 GARVYALP 92 (124)
T ss_dssp CCSCCCCH
T ss_pred CCCcccCH
Confidence 65544344
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.74 E-value=0.47 Score=60.07 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy3622 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEY 435 (964)
Q Consensus 406 ~LEkek~~L~~eie~l~~~le~~~~~~~~l 435 (964)
.+.+.+..|+.++.+|+..++.....+..+
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L 947 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947 (1080)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666655555444444433
No 20
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=94.16 E-value=0.07 Score=50.12 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=48.7
Q ss_pred hhhHHHHHhhcCC-CCCCCCc-ccccccHHHHHHHHHhhCCCCCCC-CCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLS-NPDRLSD-YEDLADGIYIHEVYLLIDPEPVHQ-SVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 16 ~~~L~~W~~tf~~-~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~-~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..++..|+|+... .+.++.+ +.||.||++|..++..|.|...+. .+...+.+..-++.|....+..+..
T Consensus 24 ~ktft~WiN~~L~~~~~~v~dL~~Dl~DGv~L~~Lle~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~ 95 (131)
T 2vzc_A 24 KKTLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQD 95 (131)
T ss_dssp HHHHHHHHHHHHGGGTCCCCCTTTTTTTSHHHHHHHHHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCHHHHcccHHHHHHHHHHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 4568999999631 2335666 569999999999999999986542 3333333456788888888776554
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.45 E-value=1.7 Score=54.94 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=14.2
Q ss_pred CCchhhHHHHHHHHHHHHHHhh
Q psy3622 107 PESKQGLENMKLLLLLLLGCAV 128 (964)
Q Consensus 107 ~~s~~~~~el~~ll~l~lg~av 128 (964)
+.|+.|.-+..++++=.|+...
T Consensus 163 GESGAGKTe~~K~i~~yla~~~ 184 (1080)
T 2dfs_A 163 GESGAGKTVSAKYAMRYFATVS 184 (1080)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccchHHHHHHHHHhhc
Confidence 3466788887777766665433
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.41 E-value=12 Score=52.49 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhhhhHhhHHHH
Q psy3622 562 DLKREMDELDSKYQVDKNTLSVL 584 (964)
Q Consensus 562 elE~e~~~L~~~~~~~~~tl~~L 584 (964)
.|..|..+...........+..|
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhc
Confidence 44444444443333333333333
No 23
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=93.32 E-value=0.13 Score=48.40 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=48.8
Q ss_pred hhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..|+.|||++.. ..+..+++|++|++..++|.-|=|..--..++.++..-..-++|++.+-.....
T Consensus 9 ~eLL~WiN~~L~--~n~tkIE~l~sGAaYCQlmD~lfg~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k 74 (145)
T 4abo_I 9 QELLAWINQVTS--LGLTRIEDCGKGYAMIQIFDSIYQDIPLKKVNFECNNEYQYINNWKVLQQVFLK 74 (145)
T ss_dssp HHHHHHHHHHHT--CCCCSGGGGGGSHHHHHHHHHHHCCSCTTTSCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCcchHHHccccHHHHHHHHHHhcCcchhhcccCCCCHHHHHHHHHHHHHHHHH
Confidence 458999998864 458899999999999999999876543334444554456778899887655544
No 24
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=92.69 E-value=0.21 Score=47.17 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=47.4
Q ss_pred HhhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.-+...+..||+++...+.+-.=++.|.||++|.++++.|.|.... .++.+...| ....|+...++....
T Consensus 16 ~~~~~e~~~WIe~~l~~~~~~~l~~~L~DGvvLCkL~N~l~P~~v~-ki~~~~~~f-~~~eNI~~Fl~a~~~ 85 (136)
T 1wyp_A 16 HQREQELREWIEGVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVK-KINESTQNW-HQLENIGNFIKAITK 85 (136)
T ss_dssp HHHHHHHHHHHHHHTCCCCCSCTTHHHHTSHHHHHHHHHHSTTSSS-CCCCSSCSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHHHHHccHHhHHHHHHhhCCCCcc-cccccccch-HHHHHHHHHHHHHHH
Confidence 3355677999999865343344556799999999999999998753 333332223 345677777766654
No 25
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=92.66 E-value=0.13 Score=53.61 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=48.7
Q ss_pred hhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCC-CCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQS-VVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~-~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
.-|+.|||.+.. ..+..+++|++|++..++|.-|=|.-.+.. ++.++..-...++|++.+-...
T Consensus 18 ~elL~WiN~~L~--~~~~kiEel~tGaayCQlmd~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F 82 (268)
T 2r8u_A 18 HDMLAWINESLQ--LNLTKIEQLCSGAAYCQFMDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGF 82 (268)
T ss_dssp HHHHHHHHHHHT--CCCCCGGGGGGSHHHHHHHHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCcchHHHcccchHHHHHHHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHH
Confidence 568999998864 458899999999999999999999775553 3344444557778888775444
No 26
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.17 Score=46.88 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=46.7
Q ss_pred hHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 18 PLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 18 ~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
-|+.|||++.. ..+..+++|++|++..+++.-|=|+.--..++.++..-..-++|++.+-..+..
T Consensus 14 elL~WiN~~L~--~n~~kiEel~tGaayCQl~d~l~g~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k 78 (127)
T 2qjx_A 14 ELLTWLNGLLN--LNYKKIEECGTGAAYCQIMDSIYGDLPMNRVKFNATAEYEFQTNYKILQSCFSR 78 (127)
T ss_dssp HHHHHHHHHHT--CCCCSGGGGGGSHHHHHHHHHHHCCSCGGGSCTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCccHHHHccchHHHHHHHhhhccccCccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999864 458889999999999999999877532223333444455677888887655543
No 27
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=91.95 E-value=0.25 Score=45.91 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=45.4
Q ss_pred hHHHHHhhcCCCC---CCCCcc-----cccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHH
Q psy3622 18 PLVTWLLSCLSNP---DRLSDY-----EDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSL 85 (964)
Q Consensus 18 ~L~~W~~tf~~~~---~~~~~~-----~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~y 85 (964)
.++.||+++...+ .|.... +-|-|||+|..+++.|.|...+ .+.......-....|+...++....|
T Consensus 16 e~~~WI~~~~~L~~~~~~~~~~~~~l~~~LkdGvvLCkLiN~l~Pg~i~-kI~~~~~~~f~~~eNI~~FL~a~~~~ 90 (126)
T 2l3g_A 16 QTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIE-KVYPEPRSESECLSNIREFLRGCGAS 90 (126)
T ss_dssp HHHHHHHHTTSSCCCSSCCSCHHHHHHHHHTTSHHHHHHHHHHSTTCCS-CCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccccCCCCCChhhHHHHHHccHHHHHHHHHHhCCCCCC-ccCCCCCcchHHHHHHHHHHHHHHHh
Confidence 3499999983211 122222 5667999999999999998765 33333333345567888888888885
No 28
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=91.78 E-value=0.16 Score=45.92 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=44.7
Q ss_pred hhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..+..||+++...+.+-.=++.|.||++|.++++.|.|.... .++.+...| ....|+...++....
T Consensus 6 ~e~~~WIe~~l~~~~~~~l~~~L~dGvvLCkL~N~l~P~~v~-ki~~~~~~f-~~~eNI~~Fl~a~~~ 71 (108)
T 1h67_A 6 RQLRVWIEGATGRRIGDNFMDGLKDGVILCELINKLQPGSVQ-KVNDPVQNW-HKLENIGNFLRAIKH 71 (108)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHCSHHHHHHHHHSTTSST-TCCCTTSSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-cccccccch-HHHHHHHHHHHHHHH
Confidence 456999998854333334567799999999999999998754 333332223 344677777766654
No 29
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=91.52 E-value=0.2 Score=46.25 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=45.5
Q ss_pred hHHHHHhhcCCCCC---CC---Cc--ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHHH
Q psy3622 18 PLVTWLLSCLSNPD---RL---SD--YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSL 85 (964)
Q Consensus 18 ~L~~W~~tf~~~~~---~~---~~--~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~y 85 (964)
.++.||+++...+. ++ .+ ++.|.|||+|.++++.|.|...+ .+.......-....|+...++....|
T Consensus 10 e~~~WI~~~~~l~~~~~~~~~~~~~l~~~L~dGvvLCkL~N~l~Pg~i~-ki~~~~~~~f~~~eNI~~FL~a~~~~ 84 (121)
T 1wyr_A 10 QIVTWLISLGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVE-KFCLDPQTEADCINNINDFLKGCATL 84 (121)
T ss_dssp HHHHHHHHHTSSCCCSSCCSCHHHHHHHHHHHSHHHHHHHHHHSTTCCS-CCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCcccCCCCcHHHHHHHHccHHHHHHHHHHhCCCCCC-cCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 45999999843221 12 12 37788999999999999998765 33322233335567888888888775
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.07 E-value=3 Score=36.91 Aligned_cols=71 Identities=27% Similarity=0.229 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3622 730 VKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEK 800 (964)
Q Consensus 730 l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~ 800 (964)
.+..+......+..|..+...+.....++.-+.++..-++.+|..-+..++++..+...|+.++..|+.+.
T Consensus 36 AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 36 AEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 33344444555555666666666666778888888888999987666666666666655555555444433
No 31
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=91.01 E-value=0.25 Score=51.69 Aligned_cols=69 Identities=12% Similarity=0.238 Sum_probs=47.6
Q ss_pred hhhHHHHHhhcCC-CCCCC-CcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLS-NPDRL-SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 16 ~~~L~~W~~tf~~-~~~~~-~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
...+..|||+... .+.++ .-++||.||++|..++..|.|......+...+..-.-++.|+...+..++.
T Consensus 22 ~~~f~~WiN~~L~~~~~~v~dl~~dL~DGv~L~~Lle~L~~~~~~~~~n~~~~~~~~~~eNv~~aL~~~k~ 92 (245)
T 2wa7_A 22 QNTFTRWCNEHLKCVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR 92 (245)
T ss_dssp HHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCccCHHHHcccHHHHHHHHHHHcCCCCchhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4467999999842 12223 457899999999999999998766444433332334567888888776655
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.87 E-value=46 Score=46.77 Aligned_cols=48 Identities=15% Similarity=0.089 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHh--hcCCCchhhhH-------Hhhc---CCHHHHHHHHHHHHhhhh
Q psy3622 113 LENMKLLLLLLLGCA--VQCPNKETFIE-------RIKE---LPVESQHALVDCIKQVTE 160 (964)
Q Consensus 113 ~~el~~ll~l~lg~a--v~~~~~~~~I~-------~I~~---L~~~~Q~~l~~~Iq~v~~ 160 (964)
+-++.+++.-++.+. ..|.+...+|. |+-. .+.+...-....|.+++.
T Consensus 1513 LRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~ 1572 (3245)
T 3vkg_A 1513 PRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVAL 1572 (3245)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 677777777777652 23445554442 2221 366666666666665553
No 33
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=90.78 E-value=0.73 Score=43.98 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=45.7
Q ss_pred hhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 15 LKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 15 ~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
+...+..||+++...+-+..=++.|.|||+|.++++.|.|.... .++.+...| ....|+...++....
T Consensus 18 ~~~e~~~WIe~~l~~~i~~~l~~~L~DGvvLCkL~N~l~P~~v~-kin~~~~~f-~~~eNI~~FL~a~~~ 85 (146)
T 1wyn_A 18 KEAELRTWIEGLTGLSIGPDFQKGLKDGTILCTLMNKLQPGSVP-KINRSMQNW-HQLENLSNFIKAMVS 85 (146)
T ss_dssp HHHHHHHHHHHHHCCCCCSCHHHHHHTTSHHHHHHHHHCTTSCS-CCCCSSCHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHccHHHHHHHHHHhCCCCcc-ccccccccc-cHHHHHHHHHHHHHH
Confidence 44567999999864333334456799999999999999998753 333322223 445677777666654
No 34
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=90.76 E-value=0.3 Score=51.77 Aligned_cols=68 Identities=13% Similarity=0.308 Sum_probs=47.1
Q ss_pred hhHHHHHhhcCC-CCCCCCc-ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLS-NPDRLSD-YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~-~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.++..|||+... .+..+.+ +.||.||++|..++..|-|......+...+..-.-++.|+...+..++.
T Consensus 50 ktft~WiN~~L~~~~~~V~dL~~DL~DGv~L~~Lle~Ls~~~l~~~~~~~p~~r~~kleNv~~aL~~lk~ 119 (272)
T 3hoc_A 50 NTFTRWCNEHLKCVSKRIANLQTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDR 119 (272)
T ss_dssp HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTSCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccHHHHHhhHHHHHHHHHHHcCCccccccCCCCccHHHHHHHHHHHHHHHHH
Confidence 467999999832 2233444 6899999999999999998776333333222334578888888876654
No 35
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.47 E-value=8.9 Score=33.90 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550 (964)
Q Consensus 500 ~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~ 550 (964)
.+.+|.++...+|.++..+.+.+.+....++..+......+.++..|...+
T Consensus 45 Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 45 DIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888889999999999888888888888888888888887776644
No 36
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=90.38 E-value=0.37 Score=53.13 Aligned_cols=68 Identities=12% Similarity=0.262 Sum_probs=48.2
Q ss_pred hhHHHHHhhcCC-CCCCCCc-ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLS-NPDRLSD-YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~-~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
-.+..|||+... ...++.+ +.||.||++|..+|..|.+......+......-..++.|+...++.+..
T Consensus 20 ktFt~WiN~~L~~~~~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~ 89 (347)
T 4b7l_A 20 NTFTRWCNEHLKSVNKRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDR 89 (347)
T ss_dssp HHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCcCCCCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHH
Confidence 456999999732 2344655 5799999999999999999876554433333445677888888765544
No 37
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.90 E-value=11 Score=34.08 Aligned_cols=79 Identities=27% Similarity=0.413 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhhHh
Q psy3622 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNE 591 (964)
Q Consensus 512 E~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~~E 591 (964)
.+|+..++..+.-....++.....|.|-...-.+-.-.+ .++.+||.++++-.+-...++.||..|+.+|..|
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDi-------RKLrELEADLKEKDsMVe~LT~TiG~LrKELEdE 131 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDM-------RKLGELEADLKEKDSMVESLTETIGILRKELENE 131 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhH-------HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444455555555554444433322222 3577788777776666667899999999999999
Q ss_pred hhhhhH
Q psy3622 592 KLKTTH 597 (964)
Q Consensus 592 k~k~~~ 597 (964)
|++.+.
T Consensus 132 klK~~E 137 (167)
T 4gkw_A 132 KLKAAE 137 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 38
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.47 E-value=15 Score=34.96 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Q psy3622 372 QAKALRLELENKRLLSTIESLHEN--AFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI 449 (964)
Q Consensus 372 ~~r~~kLe~E~k~L~~~ie~l~~~--~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~l 449 (964)
.++.-.|+.....+...++..... .++.....+..+...+.....++..|...+......+...|....++..|...|
T Consensus 12 in~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 12 VDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666665555555544332 011112233344444444555666666666666666666666666666555554
Q ss_pred HHH
Q psy3622 450 NES 452 (964)
Q Consensus 450 q~~ 452 (964)
-..
T Consensus 92 Tas 94 (154)
T 2ocy_A 92 TAS 94 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 39
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=88.92 E-value=0.48 Score=49.54 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=48.9
Q ss_pred hHHHhhhhhHHHHHhhcCCC------CCCC-CcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 10 EIEEFLKGPLVTWLLSCLSN------PDRL-SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 10 ~~~~~~~~~L~~W~~tf~~~------~~~~-~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
+-+.--...+..|||+.... +.++ .-++||.||++|..++..|-|...+.. ...+..-++.|+...++.+
T Consensus 8 e~~~~q~~~f~~WiN~~L~~~~~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~---~~~~~~~~~eNv~~aL~~~ 84 (245)
T 1sh5_A 8 ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE---KGRMRFHKLQNVQIALDYL 84 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSGGGCCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC---CCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccccccCCCCccchHhhccCHHHHHHHHHHhcCccccCC---CCcchHHHHHhHHHHHHHH
Confidence 33344455679999998532 2234 347899999999999999998765421 1223446778888888766
Q ss_pred HH
Q psy3622 83 KS 84 (964)
Q Consensus 83 ~~ 84 (964)
+.
T Consensus 85 k~ 86 (245)
T 1sh5_A 85 RH 86 (245)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 40
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.76 E-value=8.9 Score=35.00 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q psy3622 835 LEDDRRKLMEHV 846 (964)
Q Consensus 835 LEee~r~L~~q~ 846 (964)
.+++.+.|+.|+
T Consensus 106 heeEl~eLq~qi 117 (119)
T 3ol1_A 106 HEEEIQELQAQI 117 (119)
T ss_dssp HHHHHHHHHSCC
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 41
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.56 E-value=13 Score=33.24 Aligned_cols=64 Identities=25% Similarity=0.280 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy3622 765 HSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQL 828 (964)
Q Consensus 765 ~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~ 828 (964)
...|+.++..++..++.+..-.+.|...+..|.......-..+.+++..++..-+++..|..++
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555556666777777776666666666554
No 42
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=88.50 E-value=2.1 Score=41.39 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=42.9
Q ss_pred hhHHHHHhhcCCCCCC--CCcccccccHHHHHHHHHhhCCCCCCCCCCC-CCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDR--LSDYEDLADGIYIHEVYLLIDPEPVHQSVVP-SLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~--~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~-~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..+..||.++...+-| ..=.+-|.|||+|.++++.|.|.... .+.. +...| ....|+...++....
T Consensus 14 ~e~~~WIe~~l~~~l~~~~~l~~~LkdGvvLCkL~N~l~P~~i~-kI~~~~~~~f-~~~eNI~~FL~a~~~ 82 (159)
T 1p2x_A 14 DEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLI-KIFYSNELQF-RHSDNINKFLDFIHG 82 (159)
T ss_dssp HHHHHHHHHHHTSCCCCGGGHHHHTTTSHHHHHHHHHHCTTSCC-CCCCCSSCCT-THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcc-ccccccCCcc-hHHHHHHHHHHHHHH
Confidence 4789999988542212 12345599999999999999998753 3322 22223 344677777766654
No 43
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=87.88 E-value=0.73 Score=43.89 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=42.7
Q ss_pred HhhhhhHHHHHhhcCCCCCC------CCcccccccHHHHHHHHHhhCC---CCCCCCCCCCCcchHHHhhhHHHHHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSNPDR------LSDYEDLADGIYIHEVYLLIDP---EPVHQSVVPSLRNASVRIKNFNTIVKNIK 83 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~~~~------~~~~~dL~dG~~l~~vl~~iDp---~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~ 83 (964)
..+...+..||+.+...+-+ ..=.+-|.|||+|.++++.|.| ......++.+. ..-....|+...++...
T Consensus 8 ~~~e~e~~~WIe~~l~~~l~~~~~~~~~f~~~LkDGvvLCkL~N~l~P~~~~~I~~kin~~~-~~f~~~eNI~~FL~ac~ 86 (144)
T 1ujo_A 8 EELEERLVEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYPEGSKPVKVPENPPS-MVFKQMEQVAQFLKAAE 86 (144)
T ss_dssp CHHHHHHHHHHHHHHCTTTCCCCSSSSSHHHHTTSSHHHHHHHHHHSCTTTCCSCCCSSCCC-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcHHHHHHHHcchHHHHHHHHHhCcccCCCcceeecCCC-chhHHHHHHHHHHHHHH
Confidence 33445679999987532211 2233459999999999999999 44331232222 22234456666666665
Q ss_pred H
Q psy3622 84 S 84 (964)
Q Consensus 84 ~ 84 (964)
.
T Consensus 87 ~ 87 (144)
T 1ujo_A 87 D 87 (144)
T ss_dssp H
T ss_pred H
Confidence 5
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.67 E-value=14 Score=32.57 Aligned_cols=84 Identities=19% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy3622 766 SKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQ---NKLEDDRRKL 842 (964)
Q Consensus 766 ~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~---~~LEee~r~L 842 (964)
..++.+.+.+....+.+.............+..++.+|...+..++.++..+..++......+..-. ...|.++..|
T Consensus 12 ~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566666666666666677777777777777777777766655544443332211 1144455555
Q ss_pred HHHHHHH
Q psy3622 843 MEHVTNL 849 (964)
Q Consensus 843 ~~q~~~L 849 (964)
.+.|+.|
T Consensus 92 ~Rriqll 98 (101)
T 3u1c_A 92 NRRIQLV 98 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 45
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=86.39 E-value=0.64 Score=48.86 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=47.0
Q ss_pred hhhhHHHHHhhcCC-CCCCC-CcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 15 LKGPLVTWLLSCLS-NPDRL-SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 15 ~~~~L~~W~~tf~~-~~~~~-~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
-...+..|||+... .+.++ .=++||.||++|..++..|.|...+.. .. .....-++.|+...++.++.
T Consensus 28 q~~~f~~WiN~~L~~~~~~v~~l~~dl~DGv~L~~Lle~l~~~~v~k~-~~-~~~~~~~~eNi~~aL~~~k~ 97 (254)
T 1wku_A 28 QRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLEVISGERLPRP-DK-GKMRFHKIANVNKALDFIAS 97 (254)
T ss_dssp HHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCSCCCCC-CS-CCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccccCCCccCHHHHccCHHHHHHHHHHhCcCCCCCC-CC-CccHHHHHHhHHHHHHHHHH
Confidence 35577999999842 22334 346899999999999999999865442 11 12344667788887776654
No 46
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.33 E-value=12 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSV 826 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~ 826 (964)
+.++.....|..+...+++....+..++.++..|.+.|++++..|-.
T Consensus 30 eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 30 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555666666666666666666655543
No 47
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=86.15 E-value=0.63 Score=48.66 Aligned_cols=69 Identities=13% Similarity=0.275 Sum_probs=47.0
Q ss_pred HhhhhhHHHHHhhcCCC--CCCC-CcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 13 EFLKGPLVTWLLSCLSN--PDRL-SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 13 ~~~~~~L~~W~~tf~~~--~~~~-~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.--...+..|||+.... ..++ .-++||.||++|..++..|.|...+.. ...+..-++.|+...++.++.
T Consensus 15 ~~q~~~f~~WiN~~L~~~~~~~v~dl~~dl~DG~~L~~Lle~l~~~~~~~~---~~~~~~~~~eNv~~aL~~~k~ 86 (246)
T 1dxx_A 15 DVQKKTFTKWVNAQFSKFGKQHIENLFSDLQDGRRLLDLLEGLTGQKLPKE---KGSTRVHALNNVNKALRVLQN 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCSCTTTTTTTSHHHHHHHHHHHSCCCCCC---CCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCCccCHHHHhCcHHHHHHHHHHHcCCcCCCC---CCccHHHHHHHHHHHHHHHHH
Confidence 33345679999998531 1234 347899999999999999999765432 112334577788888776654
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.97 E-value=13 Score=34.29 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 781 KLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 781 ~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
+++..+..|+.+...+++....|...+.+++..... ....++..+ ..|+.+...+...+....+.|+.|+.
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i----~~lE~eL~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKL----AELEEALQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555554443331 011111111 12455555555556555565665554
No 49
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=85.52 E-value=3.1 Score=39.97 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=42.4
Q ss_pred hhhhhHHHHHhhcCCCCCCC------CcccccccHHHHHHHHHhhCC---CCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 14 FLKGPLVTWLLSCLSNPDRL------SDYEDLADGIYIHEVYLLIDP---EPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 14 ~~~~~L~~W~~tf~~~~~~~------~~~~dL~dG~~l~~vl~~iDp---~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.+...+..||+++...+-+. .=.+-|.|||+|.++++.|-| .... .++.+. ..-....|+...++....
T Consensus 17 ~~e~e~~~WIe~~l~~~l~~~~~~~~~~~~~LkDGvvLCkL~N~l~P~~~~~i~-kIn~~~-~~F~~~eNI~~FL~ac~~ 94 (155)
T 1wym_A 17 DLEQILIQWITTQCRKDVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVK-KIQAST-MAFKQMEQISQFLQAAER 94 (155)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCCSSHHHHHHHHHTSHHHHHHHHHHSCTTTCSCC-CCCCCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHcchHHHHHHHHHhccccCCCcC-cccCCC-ccccHHHHHHHHHHHHHH
Confidence 34556799999986422221 223458999999999999999 5543 333222 222334566666665554
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.96 E-value=23 Score=32.28 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSL 546 (964)
Q Consensus 512 E~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L 546 (964)
|.++..++..+++.-...-+++.++..+..|+.-|
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433333333333333333333333
No 51
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.72 E-value=19 Score=31.28 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3622 371 AQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETK 425 (964)
Q Consensus 371 ~~~r~~kLe~E~k~L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~l 425 (964)
.+.++..|+.++......+..|... +.+...+....|..+.++..++++|+..|
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~-l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLRED-IAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766 66666667778888888888888887764
No 52
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=84.66 E-value=1.1 Score=47.76 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=45.6
Q ss_pred hhhHHHHHhhcCCCCC------C----C-CcccccccHHHHHHHHHhhCCCCCCC-CCCCCCcchHHHhhhHHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLSNPD------R----L-SDYEDLADGIYIHEVYLLIDPEPVHQ-SVVPSLRNASVRIKNFNTIVKNIK 83 (964)
Q Consensus 16 ~~~L~~W~~tf~~~~~------~----~-~~~~dL~dG~~l~~vl~~iDp~~~~~-~~~~~~~~~~~~~~Nl~~i~~~i~ 83 (964)
...+..|||+...... | + .=+.||.||++|..++..+-|...+. .+.....+...++.|+...++.++
T Consensus 26 ~~~f~~WiN~~L~~~~~~~~~~~i~~~v~dl~~dL~DGv~L~~Lle~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k 105 (275)
T 1aoa_A 26 KYAFVNWINKALENDPDCRHVIPMNPNTDDLFKAVGDGIVLCKMINLSVPDTIDERAINKKKLTPFIIQENLNLALNSAS 105 (275)
T ss_dssp HHHHHHHHHHHTTTCTTSTTTCSCCTTTTHHHHHGGGSHHHHHHHHHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccccccCCCCCccchHHHHhccHHHHHHHHHHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3466999999753211 2 2 34679999999999999999976542 222222222357778888877665
Q ss_pred H
Q psy3622 84 S 84 (964)
Q Consensus 84 ~ 84 (964)
.
T Consensus 106 ~ 106 (275)
T 1aoa_A 106 A 106 (275)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.50 E-value=13 Score=34.47 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 780 EKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 780 e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
.+++..+..|+.+...+++....|...+.+++..+..- ...++..+ ..||.+...+...+....+.|+.|+.
T Consensus 41 ~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~---l~~~q~~i----~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ---LAQIQEMI----GSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555433311 11111111 12455555666666666666666654
No 54
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=83.87 E-value=2.2 Score=39.62 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=42.6
Q ss_pred hhHHHHHhhcCCC--CCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSN--PDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIK 83 (964)
Q Consensus 17 ~~L~~W~~tf~~~--~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~ 83 (964)
.+|+.|+|.-... ..++.+|. +..||.+|..+++.+.|+.++-..... .....|++..+....
T Consensus 10 ~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~af~aLih~~~P~lid~~~l~~----~~~~~n~~~af~~Ae 75 (128)
T 2d87_A 10 QMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSP----QNRRQNFEVAFSSAE 75 (128)
T ss_dssp HHHHHHHHHHSSSCTTCCCSCTTTTTTSSHHHHHHHHHHCTTTSCSTTSCS----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCCHHHcCc----cCHHHHHHHHHHHHH
Confidence 4789999976421 23466664 689999999999999999875432221 234567777665443
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.79 E-value=22 Score=31.27 Aligned_cols=51 Identities=29% Similarity=0.425 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550 (964)
Q Consensus 500 ~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~ 550 (964)
.+..|.++...++.++....+.+......++..+......+.++..|...+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888877777777777777777777766544
No 56
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.34 E-value=23 Score=31.15 Aligned_cols=83 Identities=18% Similarity=0.187 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy3622 767 KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY---QNKLEDDRRKLM 843 (964)
Q Consensus 767 ~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L---~~~LEee~r~L~ 843 (964)
.++.+.+.+....+.+....+........+..++..++..+..++.++..+.+++......+..- ....|.++..|.
T Consensus 13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLn 92 (101)
T 3u59_A 13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLN 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445566666666666666666777777777777777776665555444333221 111445555555
Q ss_pred HHHHHH
Q psy3622 844 EHVTNL 849 (964)
Q Consensus 844 ~q~~~L 849 (964)
+.|+.|
T Consensus 93 Rriqll 98 (101)
T 3u59_A 93 RRIQLV 98 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 57
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=83.30 E-value=3.4 Score=41.59 Aligned_cols=69 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred hhhhHHHHHhhcCCCCCC--CCcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 15 LKGPLVTWLLSCLSNPDR--LSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 15 ~~~~L~~W~~tf~~~~~~--~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
....+..||+.+...+-| ..=++.|.|||+|.++++.|.|.....-..++...| ....|+...++....
T Consensus 56 ~~~e~~~WIe~~l~~~l~~~~~f~~~LrDGvvLCkLiN~l~P~sv~kI~~~s~~~f-~~~eNI~~FL~ac~~ 126 (203)
T 1p5s_A 56 RVDEAKKWIEECLGTDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQF-RHSDNINKFLDFIHG 126 (203)
T ss_dssp HHHHHHHHHHHHHTSCCCCGGGHHHHHTTSHHHHHHHHHHCTTSCCCCCCCSSSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHcchHHHHHHHHHhCCCCcccccCCCCCcc-hHHHHHHHHHHHHHH
Confidence 457889999998542212 233566999999999999999987532212222223 344577666666654
No 58
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=82.77 E-value=23 Score=30.77 Aligned_cols=14 Identities=29% Similarity=0.176 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q psy3622 511 CEKEIKKCKEALES 524 (964)
Q Consensus 511 LE~E~~~l~e~lee 524 (964)
++.-+..|+.+|.+
T Consensus 81 ~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 81 IEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 33334444444443
No 59
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=82.66 E-value=34 Score=32.57 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy3622 385 LLSTIESLHENAFYESGERILELEKEKKKLSLQVED 420 (964)
Q Consensus 385 L~~~ie~l~~~~~~e~~~k~~~LEkek~~L~~eie~ 420 (964)
+..+++...+. ......++..|+.+...+.+.+..
T Consensus 26 ~E~dLEraEER-ae~aE~k~~eLEeeL~~v~~nlKs 60 (155)
T 2efr_A 26 LKKLLERAEER-AELSEGKSAELEEELKTVTNNLKS 60 (155)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444433333 333334444455444444433333
No 60
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=82.59 E-value=12 Score=32.32 Aligned_cols=68 Identities=29% Similarity=0.259 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3622 737 LKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLT 804 (964)
Q Consensus 737 Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk 804 (964)
....+..|..+...+.....++.-+..+..-+..+|..-+..++++..+...|+.+...++.+...|+
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555556677788888888888877667666666666666666555555544443
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.21 E-value=11 Score=35.46 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC----------hhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 179 MVSNVKALAKERDRYLQTWRLVEEKRNPSIGN----------SECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDEL 248 (964)
Q Consensus 179 ~~~~l~~l~~ErD~~~~~~~~l~~~~~~~~~~----------~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el 248 (964)
|...+-.-+..||.+-.++-.+...-.+.+++ .....|..|++.++.+++.+..++.+|...+..+.+++
T Consensus 26 md~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 26 MDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455567777666665554432111111 11223445555556666666666666666666666665
Q ss_pred HHHHHHHHHHHHHHH
Q psy3622 249 EHHKALINRMKAEML 263 (964)
Q Consensus 249 ~~~~~~~~~l~~e~~ 263 (964)
..+..++..+.....
T Consensus 106 ~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 106 ISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554444444333
No 62
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.01 E-value=6 Score=36.12 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=41.3
Q ss_pred hhHHHHHhhcCCC--CCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSCLSN--PDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf~~~--~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
..|+.|+|.-... ..++.+|. +..||.+|..+++.+.|+.++-..... .....|++..+..
T Consensus 12 ~~LL~W~~~~~~~y~~v~v~nFs~sw~dG~af~aLi~~~~P~lid~~~l~~----~~~~~n~~~af~~ 75 (119)
T 2d89_A 12 QSLLVWCKEVTKNYRGVKITNFTTSWRNGLSFCAILHHFRPDLIDYKSLNP----QDIKENNKKAYDG 75 (119)
T ss_dssp HHHHHHHHHHTTTCSSCCCCCSSHHHHTTHHHHHHHHHHCTTTSCGGGCCT----TCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCcCChhhhcc----cCHHHHHHHHHHH
Confidence 4689999976421 22455554 678999999999999999875432221 2345677777654
No 63
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=80.85 E-value=2.2 Score=45.73 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=49.1
Q ss_pred hhHHHhhhhhHHHHHhhcCC-CCCCCCc-ccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 9 TEIEEFLKGPLVTWLLSCLS-NPDRLSD-YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 9 ~~~~~~~~~~L~~W~~tf~~-~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
.+-+.--...+..|||+... ....+.+ ++||.||++|..++..|-|..++.. . .....-++.|+...++.++.
T Consensus 68 ~e~~~vQkktft~WINs~L~~~~~~V~dL~~DL~DGvvL~~Lle~L~~~~l~~~--~-~~~r~~kleNvn~aL~~lk~ 142 (296)
T 3f7p_A 68 DERDRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPRE--K-GRMRFHKLQNVQIALDYLRH 142 (296)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGTCCCSCTTTTTTTSHHHHHHHHHHHCCCCCCC--C-CSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcccCCCCcccHHHHHhhHHHHHHHHHHhcCCccccc--C-CcChhhhhhhHHHHHHHHHH
Confidence 34344445577999999842 1223444 6899999999999999999876442 1 22344577788887766654
No 64
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=80.14 E-value=3.8 Score=42.61 Aligned_cols=60 Identities=12% Similarity=0.197 Sum_probs=42.0
Q ss_pred hhHHHHHhhcCCCCCCCCccc-ccccHHHHHHHHHhhCCCCCCC-CCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQ-SVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~-~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
..|+.|+|.-.. ..++.+|. ++.||++|..+++.+.|..+++ .... ......|++..+..
T Consensus 146 ~~LL~W~~~~~~-~~~v~nFs~s~~dG~a~~aLi~~~~P~~i~~~~~l~----~~~~~~n~~~a~~~ 207 (245)
T 2wa7_A 146 QRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWD----PQKPVDNAREAVQQ 207 (245)
T ss_dssp HHHHHHHHHHST-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC----TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCCCcccchhhHHHHHHHHHHCccccccccccC----cccHHHHHHHHHHH
Confidence 579999997543 35577774 8999999999999999998632 1111 12356677776643
No 65
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=79.71 E-value=43 Score=31.86 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Q psy3622 421 LEETKRRLSAQCTEYESKFTKLETEIRKINESY 453 (964)
Q Consensus 421 l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~ 453 (964)
+..++++...-....+.++..+.++.......+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555666666666555544443
No 66
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=79.59 E-value=10 Score=31.69 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHhHhhHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy3622 482 KELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539 (964)
Q Consensus 482 eelEr~~~~l~~el~~l~-~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rl 539 (964)
.++|..|..|...|..+. .+.+-...-..+..|+..+.+.+..+-..+.++...+.++
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 334444444444443333 2333333344555556666666666555555555555543
No 67
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=77.87 E-value=1.6 Score=46.27 Aligned_cols=65 Identities=15% Similarity=0.231 Sum_probs=42.1
Q ss_pred hhHHHHHhhcC---CCCCCCCccc-ccccHHHHHHHHHhhCCCCCCCC-----CCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSCL---SNPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQS-----VVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf~---~~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~-----~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
..|+.|+|... +.+. +.+|. ++.||++|..+++.+.|.+.+.. +..+.-+......|++..+...
T Consensus 171 ~~LL~W~n~~l~~~g~~~-I~nF~~s~~DG~a~~aLi~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A 244 (275)
T 1aoa_A 171 ELLLRWANFHLENSGWQK-INNFSADIKDSKAYFHLLNQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQA 244 (275)
T ss_dssp HHHHHHHHHHHHHTTCCC-CSCSSTTTTTSHHHHHHHHHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCc-chhhhhhhhhhHHHHHHHHHHCCCccccccccccccccCCCccCHHHHHHHHHHHH
Confidence 46999998632 1122 77775 59999999999999999965431 1111111234567788777654
No 68
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.36 E-value=33 Score=28.77 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3622 503 EYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574 (964)
Q Consensus 503 ~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~elE~e~~~L~~~~ 574 (964)
.+.++...|..+.....+.++..+..+...+.....++.++..|.+ ++..+|.++......+
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~k----------Kiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQK----------KLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 3556677778888888888888887788777777777777776655 4555555555554433
No 69
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=76.03 E-value=11 Score=34.57 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=41.9
Q ss_pred hhhHHHHHhhcCC--CCCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLS--NPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 16 ~~~L~~W~~tf~~--~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
...|+.|+|.-.. ...++.+|. +..||.+|.-+++.+.|+.++-..... .....|++..+..-
T Consensus 11 ~~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~~----~~~~~n~~~af~~A 76 (121)
T 2d88_A 11 SSKLLGWCQRQTDGYAGVNVTDLTMSWKSGLALCAIIHRYRPDLIDFDSLDE----QNVEKNNQLAFDIA 76 (121)
T ss_dssp SCHHHHHHHHHSTTSSSCCCCCSSHHHHTSHHHHHHHHHHCTTTSCTTTSCT----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCCCchhhccccHHHHHHHHHhCcCcCCHHHcCc----cCHHHHHHHHHHHH
Confidence 4578999996642 123466664 689999999999999999874432211 23456777665443
No 70
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.02 E-value=34 Score=31.61 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=6.4
Q ss_pred HHhHHHHHHHHHHHHH
Q psy3622 508 LANCEKEIKKCKEALE 523 (964)
Q Consensus 508 ~~~LE~E~~~l~e~le 523 (964)
+..+|.++..++..+.
T Consensus 86 i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.41 E-value=45 Score=29.81 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHH
Q psy3622 703 NMEYESVVKEIKVLKSTLRDVKNENKTV-------KEQYSQLKVSYESL 744 (964)
Q Consensus 703 ~~E~E~l~~e~e~Lk~~~~~Le~e~r~l-------~~~~~~Le~~~~~L 744 (964)
..++..+...++.+...++.|+..+-+| ..-+..++.+++..
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444444444444444444444443 33444455555443
No 72
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=75.13 E-value=2.4 Score=52.72 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=47.4
Q ss_pred hhHHHHHhhcCC-CCCCC-CcccccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLS-NPDRL-SDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~-~~~~~-~~~~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~ 84 (964)
..+..|||+... .+.++ .-+.||.||++|..++..|.|...+.+. . ..+..-++.|+...+..++.
T Consensus 11 ~~f~~Win~~L~~~~~~v~~l~~dl~DG~~L~~l~e~l~~~~~~~~~-~-~~~~~~~~eN~~~~l~~~~~ 78 (863)
T 1sjj_A 11 KTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPE-R-GKMRVHKISNVNKALDFIAS 78 (863)
T ss_dssp HHHHHHHHHHHHHHCSCCCCCSSTTSSCHHHHHHHHHTSCCCCCCSC-C-CSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCccCHHHHhcCHHHHHHHHHHhCCCceeCCC-C-CccHHHHHHHHHHHHHHHHH
Confidence 356999999841 12344 3568999999999999999998765422 1 12355778888888877765
No 73
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=74.85 E-value=3.9 Score=37.26 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.7
Q ss_pred hhHHHHHhhcC--CCCCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSCL--SNPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf~--~~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
.+|+.|+|... ....++.+|. +..||.+|.-+++.+.|+.++-.... ......|++..+..
T Consensus 10 ~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~----~~~~~~n~~~af~~ 73 (116)
T 1wyl_A 10 EELLRWCQEQTAGYPGVHVSDLSSSWADGLALCALVYRLQPGLLEPSELQ----GLGALEATAWALKV 73 (116)
T ss_dssp HHHHHHHHHHHHHSTTCCCSCTTTTTTSSHHHHHHHHHHCTTSCCCSSGG----GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCCccccccccHHHHHHHHHHCcCCCCHHHhc----cCCHHHHHHHHHHH
Confidence 46899999652 1123466664 68999999999999999987533211 12355677766643
No 74
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=74.78 E-value=2.2 Score=42.58 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=31.0
Q ss_pred hHHHHHhhcCCCCCCC--CcccccccHHHHHHHHHhhCCCCCC
Q psy3622 18 PLVTWLLSCLSNPDRL--SDYEDLADGIYIHEVYLLIDPEPVH 58 (964)
Q Consensus 18 ~L~~W~~tf~~~~~~~--~~~~dL~dG~~l~~vl~~iDp~~~~ 58 (964)
-+..||+++...+-|. .=.+-|.|||+|.++++.|.|...+
T Consensus 51 e~~~WIe~~lg~~l~~~~~l~~~LrdGvvLCkL~N~l~Pg~vp 93 (193)
T 3i6x_A 51 EAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVVS 93 (193)
T ss_dssp HHHHHHHHHHSSCCCCGGGHHHHHTTSHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHhCCCCCChHHHHHHhccHHHHHHHHHHHCCCCCC
Confidence 6899999986433221 2346789999999999999998754
No 75
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=73.85 E-value=13 Score=38.68 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=41.4
Q ss_pred hhHHHHHhhc-CCC-CCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSC-LSN-PDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf-~~~-~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
.+|+.|+|.- ..- ..++.+|. ++.||.+|..+++.+.|+.++-.... ......|++..+..-
T Consensus 143 ~~LL~W~~~~~~~y~~v~v~nFs~s~~DG~a~~aLi~~~~P~~id~~~l~----~~~~~~n~~~a~~~A 207 (254)
T 1wku_A 143 EGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDLIDYAKLR----KDDPIGNLNTAFEVA 207 (254)
T ss_dssp HHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCTTSCCGGGCC----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCcCCCCccchhhHHHHHHHHHHHCCCcccccccC----cCCHHHHHHHHHHHH
Confidence 4799999943 211 23466664 79999999999999999987543221 123556777666443
No 76
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.45 E-value=57 Score=30.40 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy3622 785 DFRALQEEHKGNHMEKRKLTLSLTELEGE 813 (964)
Q Consensus 785 ~~~~Lq~e~~~L~~e~~~lk~~l~~le~E 813 (964)
.+..+..+...++.++..|+.++..++.+
T Consensus 104 k~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 104 KAESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 77
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=72.12 E-value=40 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3622 510 NCEKEIKKCKEALESKAESLDKLTNKL 536 (964)
Q Consensus 510 ~LE~E~~~l~e~lee~e~~le~~e~~l 536 (964)
.+..|+..+.+.+..+-..+.++...+
T Consensus 39 ~~~~Elk~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 39 AFRSNLKTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 78
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=71.32 E-value=10 Score=39.20 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=41.2
Q ss_pred hhHHHHHhhcCC--CCCCCCcc-cccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSCLS--NPDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf~~--~~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
.+|+.|+|.-.. ...++.+| .++.||.+|..+++.+.|..++-.... ......|++..+...
T Consensus 136 ~~LL~W~~~~~~~~~~~~v~nF~~s~~DG~a~~aLi~~~~P~~i~~~~l~----~~~~~~n~~~a~~~a 200 (245)
T 1sh5_A 136 EKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVY----RQTNLENLDQAFSVA 200 (245)
T ss_dssp HHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHTTCTTTCCHHHHH----HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcccCCccccccchHHHHHHHHHHCCCCCCHHHcc----cCCHHHHHHHHHHHH
Confidence 469999985432 12356676 469999999999999999986533211 112456777666443
No 79
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=71.23 E-value=4.7 Score=46.71 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=45.1
Q ss_pred hhhHHHHHhhcCCCCCCCCc-ccccccHHHHHHHHHhhCCCCCCCC-CCCCC-cchHHHhhhHHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLSNPDRLSD-YEDLADGIYIHEVYLLIDPEPVHQS-VVPSL-RNASVRIKNFNTIVKNIK 83 (964)
Q Consensus 16 ~~~L~~W~~tf~~~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~~~-~~~~~-~~~~~~~~Nl~~i~~~i~ 83 (964)
...+..|||+... +.++.+ ++||.||++|..++..|-|...+.. +..+. ..-.-++.|....+..++
T Consensus 278 ~ktf~~WiN~~~~-~~~v~dl~~Dl~DG~~L~~Lle~l~~~~~~~~~~~~~~~~~r~~~leNv~~aL~~~k 347 (506)
T 1pxy_A 278 ERCYRLWINSLGI-DSYVNNVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVIKIGK 347 (506)
T ss_dssp HHHHHHHHTTTTC-SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCcccHHHHHHhHHHHHHHHHHHcCCccccccccCCccccHHHHHHHHHHHHHHHH
Confidence 3467999999864 444544 7899999999999999999764322 22222 222346778777766544
No 80
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.21 E-value=63 Score=29.65 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q psy3622 510 NCEKEIKKCKE 520 (964)
Q Consensus 510 ~LE~E~~~l~e 520 (964)
.||.++..++.
T Consensus 86 ~lE~eL~~~r~ 96 (129)
T 3tnu_B 86 ELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHHHH
Confidence 33333333333
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.71 E-value=36 Score=30.97 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 706 YESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME 749 (964)
Q Consensus 706 ~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~ 749 (964)
++.|..+++.|+..+..+..+.. ..+..|+.++..|+++++
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q---~~v~ql~~~i~~Le~eL~ 57 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQ---RVVLQLKGHVSELEADLA 57 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443332 233456666666666643
No 82
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=70.45 E-value=6.6 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=40.6
Q ss_pred hhHHHHHhhcCC--CCCCCCcc-cccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSCLS--NPDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf~~--~~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
.+|+.|++.-.. ...++.+| .+..||.+|.-+++.+.|+.++-.... ......|++..+..-
T Consensus 6 ~~LL~W~q~~~~~y~~v~v~nFs~sw~dG~af~aLih~~~P~lid~~~l~----~~~~~~n~~~af~~A 70 (109)
T 1bkr_A 6 DALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLK----KSNAHYNLQNAFNLA 70 (109)
T ss_dssp HHHHHHHHHHTTTCTTCCCSSSSGGGTTSHHHHHHHHHHCGGGCCGGGCC----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCcccccccHHHHHHHHHHCcCCCCHHHcC----cCCHHHHHHHHHHHH
Confidence 478999996521 12346665 478999999999999999876433211 123456777666443
No 83
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=69.47 E-value=6.7 Score=41.39 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=42.5
Q ss_pred hhhHHHHHhhcCCCCCCCCccc-ccccHHHHHHHHHhhCCCCCCC--CCCCCCcchHHHhhhHHHHHHHH
Q psy3622 16 KGPLVTWLLSCLSNPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQ--SVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 16 ~~~L~~W~~tf~~~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~--~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
..+|+.|+|.-.. +.++.+|. ++.||++|..+++.+.|+.+++ .+. ......|++..|.--
T Consensus 172 k~~LL~W~n~~~~-~~~I~nFs~sw~DG~af~aLi~~~~P~li~d~~~l~-----~~~~~~n~~~Af~~A 235 (272)
T 3hoc_A 172 KQRLLGWIQNKLP-QLPITNFSRDWQSGRALGALVDSCAPGLCPDWDSWD-----ASKPVTNAREAMQQA 235 (272)
T ss_dssp HHHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSC-----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCCCCChhhcccchHHHHHHHHHhCcccccchhhcC-----ccCHHHHHHHHHHHH
Confidence 4579999996532 45677776 5999999999999999987631 221 123566777766443
No 84
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=68.21 E-value=14 Score=42.79 Aligned_cols=65 Identities=14% Similarity=0.295 Sum_probs=45.1
Q ss_pred hhHHHHHhhc-C--CCCCCCCccc--ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSC-L--SNPDRLSDYE--DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf-~--~~~~~~~~~~--dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
.+|+.|++.- . ....++.+|. ++.||++|..+++.+.|..++-.......+-..+..|++..+.-
T Consensus 400 ~~LL~W~~~~~~~~~~~~~i~nF~d~s~~dG~a~~aLi~~~~P~li~~~~l~~~~s~~~~~~N~~~a~~~ 469 (506)
T 1pxy_A 400 ADILSWANRKVRTMGRKLQIESFKDKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETDDEKRLNATYIVSV 469 (506)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSSTTCGGGGGCHHHHHHHHHHCGGGCCTTSCCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCccccCCCCcccccchHHHHHHHHhhCCCeeehhhcccCCCchhHHHHHHHHHHH
Confidence 5799999943 2 1235688996 89999999999999999987544322111223566788877663
No 85
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=68.12 E-value=4.2 Score=37.67 Aligned_cols=61 Identities=10% Similarity=0.150 Sum_probs=40.1
Q ss_pred hhHHHHHhhcC--CCCCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSCL--SNPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf~--~~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
.+|+.|+|.-. ....++.+|. +..||.+|.-+++.+.|+.++-..... .....|++..+..
T Consensus 10 ~~LL~W~q~~~~~y~~v~V~nFs~sw~DG~Af~aLih~~~P~lid~~~l~~----~~~~~n~~~af~~ 73 (127)
T 1wyq_A 10 DALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRPDLLDFESLKK----CNAHYNLQNAFNL 73 (127)
T ss_dssp HHHHHHHHHHHHTSSSCCCSCSSTTSSSSHHHHHHHHHHCTTTCCTTTSCS----SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHHCcCcCCHHHhCc----CCHHHHHHHHHHH
Confidence 46899999541 1123466654 789999999999999999875432211 1245677666543
No 86
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.71 E-value=31 Score=31.94 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHH
Q psy3622 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINES 452 (964)
Q Consensus 414 L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~ 452 (964)
...++..|...+......+...|.....+..|...|-..
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666666666666666665555443
No 87
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.29 E-value=55 Score=27.42 Aligned_cols=57 Identities=26% Similarity=0.211 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISAL 824 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L 824 (964)
++.+.+......+.....+.........+..++..++..+..++.++..+.+++...
T Consensus 11 lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 11 LKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555556666666666666666555444333
No 88
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=66.96 E-value=6.3 Score=45.72 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=44.8
Q ss_pred hhHHHHHhhcCCCCCCCCc-ccccccHHHHHHHHHhhCCCCCC-CCCCCCC-----cchHHHhhhHHHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSD-YEDLADGIYIHEVYLLIDPEPVH-QSVVPSL-----RNASVRIKNFNTIVKNIKS 84 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~-~~dL~dG~~l~~vl~~iDp~~~~-~~~~~~~-----~~~~~~~~Nl~~i~~~i~~ 84 (964)
..+..|||+... +.++.+ ++||.||++|..++..|=|...+ ..++..+ ....-++.|....+..++.
T Consensus 288 k~f~~WiN~~~~-~~~v~~l~~DL~DG~~L~~Lle~l~~g~v~~~~~~~~p~~~~~~~r~~~~eNv~~al~~~~~ 361 (513)
T 1rt8_A 288 RVFTLWLNSLDV-TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKN 361 (513)
T ss_dssp HHHHHHHHHTTC-SSCCSCHHHHTTTSHHHHHHHHHHSTTCCCGGGSCCCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCccCHHHHHhhHHHHHHHHHHhCCCCcchhhhcCCcccccccchHHHHHHHHHHHHHHHH
Confidence 468999999964 445654 78999999999999977776432 1222211 1234667788777765553
No 89
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.44 E-value=73 Score=28.19 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy3622 783 KADFRALQEEHKGNHMEKRKLTLSLTELEG 812 (964)
Q Consensus 783 ~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~ 812 (964)
+.-+..-.+.-+.+.++...|..++..++.
T Consensus 75 ~~DF~aERadREkl~~eKe~L~~ql~~Lq~ 104 (110)
T 2v4h_A 75 KADFQAERHAREKLVEKKEYLQEQLEQLQR 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhHHHHHhHHHHHHHHHHHHHH
Confidence 333333333333444444444444433333
No 90
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.74 E-value=30 Score=32.02 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=24.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 506 TKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550 (964)
Q Consensus 506 ~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~ 550 (964)
..+...+.++..+...+.+.......++....+++.|+..|..-+
T Consensus 39 ~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasL 83 (135)
T 2e7s_A 39 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 83 (135)
T ss_dssp HHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666665555555555555555555555554443
No 91
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=64.73 E-value=10 Score=41.58 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.9
Q ss_pred hhHHHHHhhcCCCCCCCCcc-cccccHHHHHHHHHhhCCCCCCC--CCCCCCcchHHHhhhHHHHHHHH
Q psy3622 17 GPLVTWLLSCLSNPDRLSDY-EDLADGIYIHEVYLLIDPEPVHQ--SVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 17 ~~L~~W~~tf~~~~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~--~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
..|+.|+|.-.. ..++.+| .++.||.+|..+++.+.|+.+.+ .+.+ .....|++..|.--
T Consensus 143 ~~LL~W~~~~~~-~~~v~nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~-----~~~~~n~~~Af~~A 205 (347)
T 4b7l_A 143 QRLLGWIQNKIP-YLPITNFNQNWQDGKALGALVDSCAPGLCPDWESWDP-----QKPVDNAREAMQQA 205 (347)
T ss_dssp HHHHHHHHHHCT-TSCCCCSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCT-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCC-CcccCCCCCCccchHHHHHHHHHhCCccccchhhcCc-----CCHHHHHHHHHHHH
Confidence 469999996532 3457777 48999999999999999987632 2211 23456777666543
No 92
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=64.35 E-value=6.4 Score=39.16 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHhhhhhHHHHHhhcCCCCCC--CCcccccccHHHHHHHHHhhCCCCC
Q psy3622 12 EEFLKGPLVTWLLSCLSNPDR--LSDYEDLADGIYIHEVYLLIDPEPV 57 (964)
Q Consensus 12 ~~~~~~~L~~W~~tf~~~~~~--~~~~~dL~dG~~l~~vl~~iDp~~~ 57 (964)
+.-+ ..+..||.++...+-| ..=.+-|-|||+|.++++.|.|...
T Consensus 24 ~~~~-~e~~~WIe~~lg~~lp~~~~f~~~LrDGvvLCkL~N~l~P~sv 70 (190)
T 2rr8_A 24 LCHL-EEAKRWMEACLGEDLPPTTELEEGLRNGVYLAKLGNFFSPKVV 70 (190)
T ss_dssp HHHH-HHHHHHHHHHSCCCCCCHHHHHHHHSSHHHHHHHHHHSCTTTS
T ss_pred cHHH-HHHHHHHHHHhCCCCCChhHHHHHHcchhhHHHHHHHhCCCCc
Confidence 3334 6789999999643322 1223458999999999999999764
No 93
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=63.45 E-value=6 Score=45.89 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=46.3
Q ss_pred hHHHHHhh-cC--CCCCCCCccc--ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHHH
Q psy3622 18 PLVTWLLS-CL--SNPDRLSDYE--DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNI 82 (964)
Q Consensus 18 ~L~~W~~t-f~--~~~~~~~~~~--dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~i 82 (964)
.|+.|+|. +. ....++.+|. ++.||++|..+++.+.|..++-.......+...+..|++..+.--
T Consensus 412 ~LL~W~~~~~~~~~~~~~i~nF~~~s~~dG~a~~aLi~~~~P~~i~~~~l~~~~~~~~~~~n~~~af~~A 481 (513)
T 1rt8_A 412 DMVAWANSMAAKGGKGSQIRSFRDPSISTGVFVLDVLHGIKSEYVDYNLVTDGSTEELAIQNARLAISIA 481 (513)
T ss_dssp HHHHHHHHHHTTTCSSCCCSSTTCGGGGGSHHHHHHHHHHCGGGCCGGGCCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCCCCCCcccccchHHHHHHHHHhCCCcCCHHhhccccChhhHHHHHHHHHHHH
Confidence 59999995 43 1235689998 499999999999999999875443222222446778888877544
No 94
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=62.45 E-value=76 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.111 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy3622 735 SQLKVSYESLQA 746 (964)
Q Consensus 735 ~~Le~~~~~L~~ 746 (964)
+.||.+...|++
T Consensus 26 R~LEqqN~~Le~ 37 (93)
T 3s4r_A 26 RFLEQQNKILLA 37 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 95
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.23 E-value=86 Score=26.61 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 760 NLRAEHSKLKDDFRILFTANEKLKADFRALQEE 792 (964)
Q Consensus 760 ~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e 792 (964)
.+..+...|+.+++.+....-.+...+..|+.+
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444444444444443333
No 96
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=57.72 E-value=4.7 Score=36.80 Aligned_cols=60 Identities=13% Similarity=0.236 Sum_probs=38.5
Q ss_pred hhHHHHHhhcCC--CCCCCCccc-ccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHH
Q psy3622 17 GPLVTWLLSCLS--NPDRLSDYE-DLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVK 80 (964)
Q Consensus 17 ~~L~~W~~tf~~--~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~ 80 (964)
.+|+.|++.... ...++.+|. +..||.+|.-+++.+.|+.++-.... ......|++..+.
T Consensus 11 ~~LL~W~q~~~~~y~~v~v~nFs~sw~DG~af~aLih~~~P~lid~~~l~----~~~~~~n~~~af~ 73 (118)
T 1bhd_A 11 KILLSWVRQTTRPYSQVNVLNFTTSWTDGLAFNAVLHRHKPDLFSWDKVV----KMSPIERLEHAFS 73 (118)
T ss_dssp HHHHHHHHHHHTTSTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSCHHHHH----HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCCCcccccCcHHHHHHHHHHCcCcCCHHHhC----cCCHHHHHHHHHH
Confidence 468999986531 123466665 68899999999999999876422110 1124456666554
No 97
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=57.04 E-value=5.9 Score=42.32 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=40.5
Q ss_pred hhHHHHHhhcCC--CCCCCCcc-cccccHHHHHHHHHhhCCCCCCCCCCCCCcchHHHhhhHHHHHHH
Q psy3622 17 GPLVTWLLSCLS--NPDRLSDY-EDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKN 81 (964)
Q Consensus 17 ~~L~~W~~tf~~--~~~~~~~~-~dL~dG~~l~~vl~~iDp~~~~~~~~~~~~~~~~~~~Nl~~i~~~ 81 (964)
.+|+.|+|.... ...++.+| .++.||++|..+++.|.|..++-..... .....|++..|.-
T Consensus 192 ~~LL~W~n~~~~~y~~v~I~nFs~sw~DG~af~aLI~~~~P~lid~~~l~~----~~~~~N~~~Af~~ 255 (296)
T 3f7p_A 192 EKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKPLLIDMNKVYR----QTNLENLDQAFSV 255 (296)
T ss_dssp HHHHHHHHHHTTTSTTCCCCCSSGGGTTSHHHHHHHHHHCGGGCCHHHHTT----SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCccccccccHHHHHHHHHHCcCccCHHHcCc----ccHHHHHHHHHHH
Confidence 469999986532 12356677 6899999999999999998764332111 1235566665543
No 98
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=57.03 E-value=92 Score=26.58 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHH
Q psy3622 415 SLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI 449 (964)
Q Consensus 415 ~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~l 449 (964)
..++..+...+......+.+++..+..+..++..|
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 99
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.76 E-value=1.1e+02 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3622 837 DDRRKLMEHVTNLLAQYHEL 856 (964)
Q Consensus 837 ee~r~L~~q~~~L~~q~~~L 856 (964)
.+......++..|...|..|
T Consensus 84 ~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 84 QSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHhhccch
Confidence 33444444444444444433
No 100
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.72 E-value=1.1e+02 Score=27.35 Aligned_cols=32 Identities=13% Similarity=0.373 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy3622 768 LKDDFRILFTANEKLKADFRALQEEHKGNHME 799 (964)
Q Consensus 768 l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e 799 (964)
.+..+..|...++++..+...|++++..|.|.
T Consensus 75 vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 75 VQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 34445555555566666666666666666553
No 101
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.20 E-value=83 Score=25.79 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~ 552 (964)
|++..++..+|.+...+.++|...+..+++...+-.++..|+..+-..+.-
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666777777777777777777777777766666666666665444433
No 102
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=52.98 E-value=7.7 Score=40.24 Aligned_cols=43 Identities=12% Similarity=0.326 Sum_probs=32.5
Q ss_pred hhhHHHHHhhcC-C-CCCCCCccc-ccccHHHHHHHHHhhCCCCCC
Q psy3622 16 KGPLVTWLLSCL-S-NPDRLSDYE-DLADGIYIHEVYLLIDPEPVH 58 (964)
Q Consensus 16 ~~~L~~W~~tf~-~-~~~~~~~~~-dL~dG~~l~~vl~~iDp~~~~ 58 (964)
...|+.|+|... . ...++.+|. ++.||++|..+++.+.|..++
T Consensus 137 ~~~LL~W~~~~~~~~~~~~i~nFs~s~~DG~a~~aLi~~~~P~li~ 182 (246)
T 1dxx_A 137 EKILLSWVRQSTRNYPQVNVINFTTSWSDGLALNALIHSHRPDLFD 182 (246)
T ss_dssp HHHHHHHHHHHHTTCTTCCCCSSSGGGTTSHHHHHHHHHHCGGGSC
T ss_pred HHHHHHHHHHHhccCCCCCcCCCcccchhHHHHHHHHHHHCcCccc
Confidence 357999999532 1 124577774 699999999999999998764
No 103
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=50.97 E-value=64 Score=27.80 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3622 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTK 548 (964)
Q Consensus 501 ~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~ 548 (964)
...|++.+..++.|..+++..-......+.+++.++.++..|++.|..
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777666665544444455555555555555555443
No 104
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.79 E-value=1.1e+02 Score=25.45 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=15.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 750 QLKFESHSLSNLRAEHSKLKDDFRILFT 777 (964)
Q Consensus 750 ~L~~e~~~~~~l~~e~~~l~~e~~~l~~ 777 (964)
+|+.|++..+.+..+....+..+-.+..
T Consensus 18 ALeaEIqAKQ~i~EELs~vr~~ni~~es 45 (81)
T 1wt6_A 18 ALEEEVLTRQSLSREMEAIRTDNQNFAS 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555566665555555544333
No 105
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.49 E-value=1.8e+02 Score=27.59 Aligned_cols=6 Identities=33% Similarity=0.628 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy3622 767 KLKDDF 772 (964)
Q Consensus 767 ~l~~e~ 772 (964)
.+..++
T Consensus 83 ~ie~El 88 (154)
T 2ocy_A 83 KLNKEV 88 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 106
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=48.63 E-value=76 Score=26.63 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 234 LEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQR 281 (964)
Q Consensus 234 leek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~ 281 (964)
|.+...+-.++...++.+..+|..++.++..|...|..+..+-..+..
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677778888888888888888888888888766654444
No 107
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.12 E-value=1.2e+02 Score=25.17 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=22.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3622 794 KGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKL 835 (964)
Q Consensus 794 ~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~L 835 (964)
++|-.+++.|+..+++++.|...+......-+..+..|+.+|
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355555666666666666665555544444445555554443
No 108
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=46.42 E-value=1.7e+02 Score=26.51 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q psy3622 798 MEKRKLTLSLTELEGELANRD 818 (964)
Q Consensus 798 ~e~~~lk~~l~~le~El~~~~ 818 (964)
..+.+|+.+++.|++++...+
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677666543
No 109
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=45.83 E-value=2e+02 Score=27.06 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3622 508 LANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVS 545 (964)
Q Consensus 508 ~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~ 545 (964)
...||.++...+...++.+.-.++...++.-++.++..
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer 91 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 91 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555555543
No 110
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=45.80 E-value=1.3e+02 Score=25.19 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~ 550 (964)
..+......+|.++..++..+...-...+.+-+--.+++.|+...++-+
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444455555555555554444444444444455555555555544
No 111
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.82 E-value=72 Score=26.10 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 221 ADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLE 264 (964)
Q Consensus 221 ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~ 264 (964)
-+++.-+++...||..+...+..+...|.....+|..|+.+...
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566656666666666666666666666666666654443
No 112
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=39.86 E-value=30 Score=40.65 Aligned_cols=39 Identities=21% Similarity=0.505 Sum_probs=28.3
Q ss_pred HHHHhhcCCCCCC------CCcc----cccccHHHHHHHHHhhCCCCCC
Q psy3622 20 VTWLLSCLSNPDR------LSDY----EDLADGIYIHEVYLLIDPEPVH 58 (964)
Q Consensus 20 ~~W~~tf~~~~~~------~~~~----~dL~dG~~l~~vl~~iDp~~~~ 58 (964)
..|+..|...|.. ..++ +-|-|||+|..+++.|.|...+
T Consensus 11 ~~Wl~~~~~l~~~~~~~~~~~~~~~l~~~L~~G~~Lc~l~n~l~p~~v~ 59 (587)
T 3ky9_A 11 THWLIQCRVLPPSHRVTWEGAQVCELAQALRDGVLLCQLLNNLLPHAIN 59 (587)
T ss_dssp HHHHHHTTCSCTTSTTTSTTCCHHHHHHHHSSTHHHHHHHHHHSTTSSC
T ss_pred HHHHHHhCCCCCcccccCCCCChhhHHHHhCcHHHHHHHHHHhCCCCCC
Confidence 6899998644432 1122 4578999999999999998753
No 113
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.82 E-value=1.9e+02 Score=24.94 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3622 767 KLKDDFRILFTANEKL 782 (964)
Q Consensus 767 ~l~~e~~~l~~~~e~l 782 (964)
+|..++..|..+.+.|
T Consensus 76 rL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 76 RLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3333333333333333
No 114
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=38.66 E-value=1.8e+02 Score=24.57 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 835 LEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
++.+...+...+....+.|+.|+.
T Consensus 40 lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 40 KEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 115
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.64 E-value=1.7e+02 Score=24.72 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551 (964)
Q Consensus 504 Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e 551 (964)
+......+|.++..++..+...-...+.+-+--.+++.|+...++-++
T Consensus 33 ~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 33 SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 333444445555555554444444444444444455555555555444
No 116
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.24 E-value=1.7e+02 Score=25.50 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy3622 469 NMNREKQK 476 (964)
Q Consensus 469 ~l~~e~~~ 476 (964)
+|..+..+
T Consensus 23 ~Le~E~~r 30 (100)
T 1go4_E 23 ELEGERSR 30 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 117
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.44 E-value=2.4e+02 Score=25.13 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHH
Q psy3622 559 KYNDLKREMDELDSKYQVDKNTLSVLQ 585 (964)
Q Consensus 559 ~l~elE~e~~~L~~~~~~~~~tl~~Lq 585 (964)
++.+|+.++..|..++......++.|+
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr 98 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLR 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544443333333333
No 118
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.04 E-value=2.4e+02 Score=24.91 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3622 244 SRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVE 297 (964)
Q Consensus 244 ~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~lk~kl~~l~~~k~~~~ 297 (964)
+..++.....++..|..++..|...... ++.+-..|-.||++++.+.....
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~---lEkERDFYF~KLRdIEiLcQe~~ 59 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVST---LEIEREFYFNKLRDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333332 35555677778888776655443
No 119
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=34.66 E-value=56 Score=28.12 Aligned_cols=47 Identities=9% Similarity=0.191 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 802 KLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTN 848 (964)
Q Consensus 802 ~lk~~l~~le~El~~~~e~~~~L~~~~~~L~~~LEee~r~L~~q~~~ 848 (964)
.....++.--.|+...+..+-.|.....++...+|+++..|..++..
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443344444455555566677777777788888888777654
No 120
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.33 E-value=4.8e+02 Score=28.26 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q psy3622 785 DFRALQEEHKGNHMEKRKLTLSL 807 (964)
Q Consensus 785 ~~~~Lq~e~~~L~~e~~~lk~~l 807 (964)
.++.|+..++.++..+++|+..|
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444
No 121
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.92 E-value=1.4e+02 Score=25.81 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 760 NLRAEHSKLKDDFRILFTANEKLKADF 786 (964)
Q Consensus 760 ~l~~e~~~l~~e~~~l~~~~e~l~~~~ 786 (964)
.+....+.|+.+..-|..+.+.+...|
T Consensus 68 ~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 68 KMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344455556666655555556665554
No 122
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.91 E-value=2.6e+02 Score=24.97 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=17.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy3622 790 QEEHKGNHMEKRKLTLSLTELEGELANRDDAIS 822 (964)
Q Consensus 790 q~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~ 822 (964)
+....+|++++..|.-.+.++.+++..++..+.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 344555556666666555555555555543333
No 123
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=33.33 E-value=96 Score=36.21 Aligned_cols=45 Identities=16% Similarity=0.342 Sum_probs=9.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEW 479 (964)
Q Consensus 435 lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~ 479 (964)
++.+...+.++....+.++...+..+..|+.+...+..+...|..
T Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~ 384 (575)
T 2i1j_A 340 YQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQ 384 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333334444444443333333
No 124
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.26 E-value=2.5e+02 Score=24.59 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYND 562 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L~~~~e~~~~~~~~l~e 562 (964)
..|...+..+-.++..|+..+++.+..+..+.++.....+++..++.....+......+.+
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 125
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=32.98 E-value=1.8e+02 Score=22.96 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 221 ADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLEL 265 (964)
Q Consensus 221 ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l 265 (964)
|..++..++ ++...+-.....++..+...+...|..|+.|+..|
T Consensus 13 AA~R~R~KK-k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 13 AATRYRQKK-RAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 22333333333344444444444444444444443
No 126
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=32.73 E-value=2.4e+02 Score=24.23 Aligned_cols=8 Identities=0% Similarity=0.148 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q psy3622 658 TSQSQISS 665 (964)
Q Consensus 658 ~L~sq~~s 665 (964)
+|....++
T Consensus 13 ~LNdRlAs 20 (93)
T 3s4r_A 13 ELNDRFAN 20 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 127
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=32.66 E-value=54 Score=38.34 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy3622 409 KEKKKLSLQVEDLEETKRRLSAQ 431 (964)
Q Consensus 409 kek~~L~~eie~l~~~le~~~~~ 431 (964)
+++..|...+..+..++......
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~ 357 (575)
T 2i1j_A 335 KKQQEYQDRLRQMQEEMERSQAN 357 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 128
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=32.17 E-value=96 Score=27.14 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy3622 378 LELENKRLLSTIESLHE 394 (964)
Q Consensus 378 Le~E~k~L~~~ie~l~~ 394 (964)
.+.+...|+..|+.|+.
T Consensus 73 ~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 73 LREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555554
No 129
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=31.32 E-value=1.7e+02 Score=25.25 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy3622 511 CEKEIKKCKE 520 (964)
Q Consensus 511 LE~E~~~l~e 520 (964)
+|.++..++.
T Consensus 49 lE~eL~~~r~ 58 (95)
T 3mov_A 49 KEREMAEIRD 58 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 130
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.09 E-value=1.4e+02 Score=21.62 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 720 LRDVKNENKTVKEQYSQLKVSYESLQAEME 749 (964)
Q Consensus 720 ~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~ 749 (964)
..+|+...++++.+..+|+.++.-|..|-.
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345666666666666667666666665543
No 131
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.51 E-value=2.9e+02 Score=23.95 Aligned_cols=77 Identities=22% Similarity=0.207 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 408 EKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELEL 486 (964)
Q Consensus 408 Ekek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~e~~~l~~~~eelEr 486 (964)
+..+++|+..|.++..+++.....+.-+++....... +..+.+ -...+.++.+....+..|..+..+++..+.+++.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~-nP~~GD-~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEK-TPQMGD-PASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-CGGGCC-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777778888888887777775555554433221 111100 0011344556677777888888888887777764
No 132
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=28.03 E-value=6.5e+02 Score=27.86 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy3622 559 KYNDLKREMDELDSKYQ 575 (964)
Q Consensus 559 ~l~elE~e~~~L~~~~~ 575 (964)
++.++|.++..+..++.
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666554443
No 133
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.30 E-value=2.5e+02 Score=27.62 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 234 LEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYK 283 (964)
Q Consensus 234 leek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~lk 283 (964)
|.+..++-.++...++.+..+|..|+.++..|...|..+.-+-..+..|.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777778888888888888888888777766665555554
No 134
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.88 E-value=2.6e+02 Score=22.88 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 227 LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRA 267 (964)
Q Consensus 227 lr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~ 267 (964)
++.+...+..|.++|.....-+..+...|.....++..|..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666666666666665555554433
No 135
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=24.38 E-value=4.3e+02 Score=24.52 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3622 731 KEQYSQLKVSYESLQAEMEQL 751 (964)
Q Consensus 731 ~~~~~~Le~~~~~L~~e~~~L 751 (964)
...|..++.+++.++..+..|
T Consensus 75 ~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 75 KSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 334555555555555554433
No 136
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.19 E-value=1.3e+02 Score=22.99 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy3622 704 MEYESVVKEIKVLKSTLRDVKNENKTVK 731 (964)
Q Consensus 704 ~E~E~l~~e~e~Lk~~~~~Le~e~r~l~ 731 (964)
.+|+.+..+...|+..+..|..++..+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444444333
No 137
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.04 E-value=2.7e+02 Score=23.15 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622 235 EEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALE 276 (964)
Q Consensus 235 eek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le 276 (964)
.+..+.-..+-..++.+..+|..|+.++..|...|..++.+-
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~la 71 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMA 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555566666666666666666666665555433
No 138
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.70 E-value=2.3e+02 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.417 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3622 705 EYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKV 739 (964)
Q Consensus 705 E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~ 739 (964)
-|+.+..+.+.|+.....|..+..+=...+..|+.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ 38 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLET 38 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHh
Confidence 47777777777777777777666655555555544
No 139
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.69 E-value=3.2e+02 Score=22.80 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3622 835 LEDDRRKLMEHVTNLLAQYHELLT 858 (964)
Q Consensus 835 LEee~r~L~~q~~~L~~q~~~Ll~ 858 (964)
++.+...+...+....+.|+.|+.
T Consensus 38 lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 38 LQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455444455555443
No 140
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=23.33 E-value=4.6e+02 Score=24.47 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3622 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSL 546 (964)
Q Consensus 502 ~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~~L 546 (964)
.+..+++..++.++.+.-+-.+..+.....++..|.-+...+..|
T Consensus 76 eE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 76 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555556666666665555555555555555554444444443
No 141
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=22.94 E-value=1.9e+02 Score=26.27 Aligned_cols=10 Identities=0% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHH
Q psy3622 730 VKEQYSQLKV 739 (964)
Q Consensus 730 l~~~~~~Le~ 739 (964)
++++.+.++.
T Consensus 28 Leek~~~~e~ 37 (130)
T 3cl3_D 28 LEGRARAASE 37 (130)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 142
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.87 E-value=3.8e+02 Score=23.39 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------------------HHHHHHHHHHHHHHHH
Q psy3622 722 DVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHS-------------------KLKDDFRILFTANEKL 782 (964)
Q Consensus 722 ~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L~~e~~~~~~l~~e~~-------------------~l~~e~~~l~~~~e~l 782 (964)
.+..+...+-.++..+..++..+..++..+..+.+.+..+..+.. ....-...|....+.+
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3622 783 KADFRALQEEHKGNHMEKRKLTLSLTEL 810 (964)
Q Consensus 783 ~~~~~~Lq~e~~~L~~e~~~lk~~l~~l 810 (964)
......+......+...+..++..+..+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.84 E-value=2.8e+02 Score=21.55 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=26.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy3622 397 FYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTE 434 (964)
Q Consensus 397 ~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~ 434 (964)
+..+.+|++.|=+-+..++.++..++..+..+...+..
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 44556677778888888888777777777666665444
No 144
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=21.28 E-value=3.9e+02 Score=22.93 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=5.0
Q ss_pred HhhHHHHHHHHHHH
Q psy3622 794 KGNHMEKRKLTLSL 807 (964)
Q Consensus 794 ~~L~~e~~~lk~~l 807 (964)
+.+.++...|..++
T Consensus 64 Ekl~~eKe~L~~ql 77 (94)
T 3jsv_C 64 EKLVEKKEYLQEQL 77 (94)
T ss_dssp HHHHHTTSHHHHHH
T ss_pred HHHHhHHHHHHHHH
Confidence 33333333333333
No 145
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.87 E-value=1.3e+02 Score=22.94 Aligned_cols=35 Identities=29% Similarity=0.295 Sum_probs=23.5
Q ss_pred CCCChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3622 207 SIGNSECQHLAVELADLKSKLRKQRLELEEKSEHL 241 (964)
Q Consensus 207 ~~~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L 241 (964)
.+++.+...|..|+++++.++..+..++++-..+|
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777788888888888777766666555444
Done!