RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3622
(964 letters)
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 70.9 bits (174), Expect = 3e-12
Identities = 79/380 (20%), Positives = 154/380 (40%), Gaps = 47/380 (12%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE- 268
E + L ++ +L+ K+ + L E + L E +ELE + + + ++ LR +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
Query: 269 ARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENT 328
AR +E +R +L ++ +EEL + E E +A E+L+ IE+
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-- 793
Query: 329 NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTS---SAQAKALRLELENKRL 385
+L + + L +LT A RLE +R+
Sbjct: 794 --------------------LKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
Query: 386 LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETE 445
+T L + E+I EL ++ + L+ ++E+LEE L ++ ++ LE
Sbjct: 834 AATERRLEDLE-----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
Query: 446 IRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINE- 503
+ + + L +++ + + RE ++L K +LEL +E + ++ N E ++E
Sbjct: 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
Query: 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM--------------EKEHVSLTKQ 549
Y L E K ++ E L +L NK++ + ++ + LT Q
Sbjct: 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
Query: 550 IEDQENELKKYNDLKREMDE 569
ED + + E+D
Sbjct: 1009 KEDLTEAKETLEEAIEEIDR 1028
Score = 66.2 bits (162), Expect = 7e-11
Identities = 147/724 (20%), Positives = 275/724 (37%), Gaps = 72/724 (9%)
Query: 216 LAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKAL 275
L EL + + +L + EL+E E L E R E+ + I ++ E+ L E L
Sbjct: 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS---RL 300
Query: 276 ESEIQRYKDKLTDLEYYKSRVEE-LRQDNRAINEIALERDANAEKLQQLIEENTNLS-LL 333
E + Q +++L +LE +E L + ++E+A E EKL++L EE +L L
Sbjct: 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
Query: 334 SKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLH 393
+ ++ +L + + S+ Q +L E+E RL + +E L
Sbjct: 361 EELEAELEELESRLEELEEQL-----ETLRSKVAQLELQIASLNNEIE--RLEARLERLE 413
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
+ E E KK ++++L+ L + E + + +LE + ++ E
Sbjct: 414 DRRERLQQEI---EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLA---N 510
+ E + EL + LE + LE E K L N ++ L+ +
Sbjct: 471 EEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS 530
Query: 511 CEKEIKKCKE-ALESKAESLDKLTNKLESMEKEHVSLTK------------QIEDQENEL 557
++ + E AL + +++ + L + +K L + I+ E +
Sbjct: 531 VDEGYEAAIEAALGGRLQAV--VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588
Query: 558 KKYNDLKR---------EMDELDSKYQVDKNTLSVLQNDLVNEKLKT-THLKNSLDKLGL 607
LK ++ + D K + + L L LV + L L L
Sbjct: 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSYL--LGGVLVVDDLDNALELAKKLRPGYR 646
Query: 608 AM----------------DDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAK 651
+ +T++ +ILE+ EI +K +E E A+
Sbjct: 647 IVTLDGDLVRPGGVITGGSAKTNS-SILER---RREIEELEEKIEELEEKIAELEKALAE 702
Query: 652 LEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVK 711
L +L+ + ++ L + L S L + L + + + QL+ E +
Sbjct: 703 LRKELEELEEELEQLRKELEELSRQISAL-RKDLARLEAEVEQLEERIAQLSKELTELEA 761
Query: 712 EIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDD 771
EI+ L+ L + + E + + +L+ E L+ E++ L+ L LRAE + L ++
Sbjct: 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA---LDELRAELTLLNEE 818
Query: 772 FRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY 831
L E L+ A + + + +L+ + L E+ ++ I L +L
Sbjct: 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878
Query: 832 QNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHE-EEKNFSDKLNNLHRQKEKLEE 890
N+ L + L EL + + E EE +KL L + E LE
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR--EKLAQLELRLEGLEV 936
Query: 891 KIME 894
+I
Sbjct: 937 RIDN 940
Score = 61.2 bits (149), Expect = 3e-09
Identities = 75/405 (18%), Positives = 164/405 (40%), Gaps = 43/405 (10%)
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
ILE +E ++L ++E+LEE L E + +LE E+ ++ + + L QI
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
Query: 464 NDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
+L + E ++LE E +++K+L+ EI E + +L E+E+ + + +E
Sbjct: 732 RKDLARLEAEVEQLE------ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
Query: 524 SKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSV 583
+++L +L+++ + L + L E L + + + ++
Sbjct: 786 ELEAQIEQLKEELKALREALDELRAE----------LTLLNEEAANLRERLESLERRIAA 835
Query: 584 LQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFND 643
+ L + + + L ++ L +++ + LE E+ + ++ +E
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-----ELEALLNERASLEEALA 890
Query: 644 ESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLN 703
+L +L+ +S+ S L + L+ +QL L ++ +L E+ +
Sbjct: 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
Query: 704 MEYE-------SVVKEIKVLKSTLRDVKNE-------NKTVKEQYSQLKVSYESLQAEME 749
+ E + + + + L+ ++N+ N E+Y +LK Y+ L A+ E
Sbjct: 951 LTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010
Query: 750 QLKFESHSLSNLRAEHSKLKDDFRILFTA-----NEKLKADFRAL 789
L + L ++ + R F NE + F L
Sbjct: 1011 DLT---EAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKL 1052
Score = 59.3 bits (144), Expect = 8e-09
Identities = 78/389 (20%), Positives = 152/389 (39%), Gaps = 73/389 (18%)
Query: 389 IESLHENAFYESGERILELEKEKKKLSLQV-----EDLEETKRRLSAQCTEYESKFTKLE 443
++SL A E ER EL+ E ++L L + E+L E L + E E + +L
Sbjct: 202 LKSLERQA--EKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELT 259
Query: 444 TEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINE 503
E++++ E + L L++ +E++ E QK EL + ++S ++
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIE----ELQK--------ELY-ALANEISRLEQQKQI 306
Query: 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDL 563
+ +LAN E+++++ + LE LD+L +L +E++ L +++E E EL++
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Query: 564 KREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKIL 623
E++ + + TL L + N +E++
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQ--------------------IASLNNEIERLE 406
Query: 624 SSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILA 683
+ E L +++L Q +I L + +L Q L
Sbjct: 407 ARLERLEDRRERL-----------------------QQEIEELLKKLEEAELKELQAELE 443
Query: 684 NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYES 743
E L E+L E E + + ++ L+ L + + + + +QL+ +S
Sbjct: 444 ELEEEL----------EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
Query: 744 LQAEMEQLKFESHSLSNLRAEHSKLKDDF 772
L+ E L+ S + L S L
Sbjct: 494 LERLQENLEGFSEGVKALLKNQSGLSGIL 522
Score = 54.7 bits (132), Expect = 2e-07
Identities = 70/287 (24%), Positives = 121/287 (42%), Gaps = 33/287 (11%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269
E + L EL +L+ KL + RLE+ E E + E + EL I+R++ + LR
Sbjct: 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
Query: 270 R----SGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIE 325
+ LE++++ + KL +L + +EE + E+ E ++ +L++L
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEE------KLEELKEELESLEAELEELEA 365
Query: 326 ENTNL-SLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKR 384
E L S L + + ++ + +A SL+ ++ +A+ RLE +R
Sbjct: 366 ELEELESRLEELEEQLETLR------SKVAQLELQIASLNNEI-ERLEARLERLEDRRER 418
Query: 385 LLSTIESL----HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFT 440
L IE L E E + ELE+E ++L ++E LEE L + E E
Sbjct: 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELN 487
E E+ Q+Q R D L+ + + K L N
Sbjct: 479 AAERELA-----------QLQARLDSLERLQENLEGFSEGVKALLKN 514
Score = 43.5 bits (103), Expect = 6e-04
Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%)
Query: 686 NELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQ 745
EL ++ + + EQL E E + ++I L+ L ++ E + ++E+ +QL L+
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
Query: 746 AEMEQLKFESHSLSNLRAEHS----KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKR 801
AE+E+L+ AE +L+ L + L+ L+ E + E
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
Query: 802 KLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSL 861
L L LE +A + + L Q+ + +E +E + L+ + L L
Sbjct: 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIES-LAAEIEELEELIEELESELEALL 879
Query: 862 EDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSC 902
++ E +L L + +LE K E R+L+
Sbjct: 880 NERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
Score = 39.3 bits (92), Expect = 0.012
Identities = 52/269 (19%), Positives = 101/269 (37%), Gaps = 42/269 (15%)
Query: 650 AKLEVDLKTSQSQISSLTSQHTALQLANSQL---------ILANHNELLQDQMTMTKLH- 699
+ E +L+ +++ L + L+L S+L L + + K
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR-LEQQKQIL 307
Query: 700 ----EQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFES 755
L + E + +++ L+S L ++ E ++E+ +LK ESL+AE+E
Sbjct: 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE------ 361
Query: 756 HSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELA 815
L AE +L+ L E L++ L+ + + L E+
Sbjct: 362 ----ELEAELEELESRLEELEEQLETLRSKVAQLELQ--------------IASLNNEIE 403
Query: 816 NRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFS 875
+ + L + + Q ++E+ +KL E L E L LE+ E
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER---LE 460
Query: 876 DKLNNLHRQKEKLEEKIMEHYRKLDSCSS 904
+ L L + E+ E+ + R+L +
Sbjct: 461 EALEELREELEEAEQALDAAERELAQLQA 489
Score = 35.4 bits (82), Expect = 0.20
Identities = 49/254 (19%), Positives = 92/254 (36%), Gaps = 47/254 (18%)
Query: 211 SECQHLAVELADLKSKLRKQR----LELEEKSEHLTESRDELEHHKALINRMKAEMLELR 266
+ + +L + +L + E+EE E + E ELE ++ + LR
Sbjct: 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
Query: 267 AEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEE 326
+E L E++ + K ++L EL + + ++ L E L+ I+
Sbjct: 894 SELEE---LSEELRELESKRSELR------RELEELREKLAQLELRL----EGLEVRIDN 940
Query: 327 NTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL- 385
Q S + + + E A+ + RLE + K L
Sbjct: 941 ---------------LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELG 985
Query: 386 ---LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKL 442
L+ IE + E ER L +K+ L+ E LEE + + E +
Sbjct: 986 PVNLAAIE-----EYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARE------RF 1034
Query: 443 ETEIRKINESYQNL 456
+ ++NE++Q +
Sbjct: 1035 KDTFDQVNENFQRV 1048
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 70.9 bits (174), Expect = 3e-12
Identities = 90/377 (23%), Positives = 168/377 (44%), Gaps = 35/377 (9%)
Query: 202 EKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAE 261
KR+ E + L ELA+L+++L K EL+ L D LE + + ++ +
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQ 717
Query: 262 MLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRA-INEIALERDANAEKL 320
+ EL+ E ALE E+++ + +L +LE +EE ++ + + E+ E ++ E L
Sbjct: 718 LEELKRELA---ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774
Query: 321 QQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLEL 380
+L EE L ++ Q L E+L A+ + LE
Sbjct: 775 AKLKEEIEELEEKRQALQ-------------------EELEELEEEL-EEAERRLDALER 814
Query: 381 ENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFT 440
E + L E L E E E I ELE++ +L ++E+LE+ L + E E++
Sbjct: 815 ELESLEQRRERL-EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEI-NKQLSNNTE 499
+LE E++++ E + LE +++ EL + E +KL + +ELE +E +L E
Sbjct: 874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE 933
Query: 500 EINEY---------KTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550
E+ E + ++ E+EI+ E +++ + E ++ + L +
Sbjct: 934 ELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAK 993
Query: 551 EDQENELKKYNDLKREM 567
E +++ + KRE
Sbjct: 994 EKLLEVIEELDKEKRER 1010
Score = 67.0 bits (164), Expect = 4e-11
Identities = 77/394 (19%), Positives = 163/394 (41%), Gaps = 51/394 (12%)
Query: 217 AVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALE 276
A ++ K + + +LE E+L D LE + + +++ + +A + L+
Sbjct: 164 AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQ----AEKAERYQELK 219
Query: 277 SEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKS 336
+E++ + L + + R +EL + ++ + E + E+L++ +E
Sbjct: 220 AELRELELALLLAKLKELR-KELEELEEELSRLEEELEELQEELEEAEKE---------- 268
Query: 337 NQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENA 396
+L +L + Q + L L+ E + L I L
Sbjct: 269 ------IEELKSELEEL-----------REELEELQEELLELKEEIEELEGEISLL---- 307
Query: 397 FYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNL 456
ER+ ELE E ++L ++E+L+E L + E E+ +LE + ++ E+ + L
Sbjct: 308 ----RERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
Query: 457 ELQIQVRNDELDNMNRE-KQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEI 515
E ++ +EL+ + +++L EL EI +L EI + +L + +
Sbjct: 364 EEKLSALLEELEELFEALREELAELEAELA---EIRNELEELKREIESLEERLERLSERL 420
Query: 516 KKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE-------DQENELKKYNDLKREMD 568
+ KE L+ L++L +LE + +E L +Q+E + E EL + + + ++
Sbjct: 421 EDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLE 480
Query: 569 ELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSL 602
+ S + + L Q + L++ L
Sbjct: 481 KELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514
Score = 65.9 bits (161), Expect = 9e-11
Identities = 75/387 (19%), Positives = 172/387 (44%), Gaps = 52/387 (13%)
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
+ + ++ K++ ++E EE RL E E + KLE + K YQ L+
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELK------ 219
Query: 464 NDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
E ++LE +L E+ K+L EE++ + +L ++E+++ ++ +E
Sbjct: 220 --------AELRELELALLLAKLK-ELRKELEELEEELSRLEEELEELQEELEEAEKEIE 270
Query: 524 SKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSV 583
L++L +LE +++E + L ++IE+ E E+ L+ ++EL+++ + + L
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISL---LRERLEELENELEELEERLEE 327
Query: 584 LQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFND 643
L+ + K + + L++L LE+ E + + E F
Sbjct: 328 LKEKIEALKEELEERETLLEEL-------EQLLAELEEAKEELEEKLSALLEELEELF-- 378
Query: 644 ESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLN 703
+ + +++ L ++ ++ + + L + E+L+
Sbjct: 379 -------------EALREELAELEAELAEIR-NELEELKREIESLEERL-------ERLS 417
Query: 704 MEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRA 763
E + +E+K L++ L +++ E + + E+ +L+ E L+ +++L+ L+ L+
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELE---RELAELQE 474
Query: 764 EHSKLKDDFRILFTANEKLKADFRALQ 790
E +L+ + L ++L+A+ RA Q
Sbjct: 475 ELQRLEKELSSLEARLDRLEAEQRASQ 501
Score = 64.0 bits (156), Expect = 3e-10
Identities = 56/247 (22%), Positives = 117/247 (47%), Gaps = 11/247 (4%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
LR + L E E + LE+E ++L ++E+LEE L +
Sbjct: 695 NELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELE 754
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELN----ME 489
E + + +LE E+ + E+ L+ +I+ + + +++LE +ELE
Sbjct: 755 ELQERLEELEEELESLEEALAKLKEEIE---ELEEKRQALQEELEELEEELEEAERRLDA 811
Query: 490 INKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQ 549
+ ++L + + + ++ E+EI++ +E L+ E L++L +LE +++E L +
Sbjct: 812 LERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE 871
Query: 550 IEDQENELKKY----NDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKL 605
E+ E+ELK+ +L+ E+ EL+S+ K + L+ L + K L+ L +L
Sbjct: 872 KEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPEL 931
Query: 606 GLAMDDQ 612
++++
Sbjct: 932 EEELEEE 938
Score = 56.3 bits (136), Expect = 8e-08
Identities = 71/345 (20%), Positives = 155/345 (44%), Gaps = 23/345 (6%)
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
++L EE+ E + +L E+E+K K L S + L++L +LE +E++ L +++
Sbjct: 667 RELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA 726
Query: 552 DQENELKK----YNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGL 607
E EL++ +L+ E++EL+ + + + L L+ +L + + LK +++L
Sbjct: 727 ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786
Query: 608 AMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLT 667
+ LE+ L L E + E LE +++ + +I L
Sbjct: 787 KRQALQEELEELEEELEE---AERRLDALERELESLEQRRER--LEQEIEELEEEIEELE 841
Query: 668 SQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNEN 727
+ L+ +L EL ++ + E+L E + + +E + L+ LR++++E
Sbjct: 842 EKLDELEEELEEL-EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 728 KTVKEQYSQLKVSYESLQAEMEQLKFESHSL-------------SNLRAEHSKLKDDFRI 774
+KE+ +L+ E L+A++E+L+ E L + L E +L+++
Sbjct: 901 AELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA 960
Query: 775 LFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDD 819
L N + ++ ++E ++ ++ L + +L + D
Sbjct: 961 LGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005
Score = 53.2 bits (128), Expect = 7e-07
Identities = 64/293 (21%), Positives = 123/293 (41%), Gaps = 20/293 (6%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK 273
+ L EL +L+ +L + ELEE E L E+ E+E K+ + ++ E+ EL+ E K
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294
Query: 274 A----LESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTN 329
LE EI +++L +LE + +EEL + + E E+ + L+EE
Sbjct: 295 EEIEELEGEISLLRERLEELE---NELEELEERLEELKEKIEALKEELEERETLLEELEQ 351
Query: 330 LSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTI 389
+ +L S E+L + + + LE E + + +
Sbjct: 352 ------------LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399
Query: 390 ESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI 449
E L ER+ L + + L ++++LE L + E + +LE ++ ++
Sbjct: 400 EELKREIESLE-ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458
Query: 450 NESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEIN 502
+ + LE ++ +EL + +E LE + LE ++ + E +
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALE 511
Score = 52.0 bits (125), Expect = 1e-06
Identities = 54/255 (21%), Positives = 113/255 (44%), Gaps = 12/255 (4%)
Query: 650 AKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESV 709
KLE +LK+ ++++ SL L+ +L EL ++ + + EQL E +
Sbjct: 684 EKLEEELKSLKNELRSLEDLLEELRRQLEELER-QLEELKRELAALEEELEQLQSRLEEL 742
Query: 710 VKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLK 769
+E++ L+ L +++ + ++E+ L+ + L+ E+E+L+ + +L E +
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802
Query: 770 DDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLS 829
++ A E+ +E + E +L + ELE +L ++ + L +L
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQ---EIEELEEEIEELEEKLDELEEELEELEKELE 859
Query: 830 KYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLE 889
+ + +LE+ + E L + L E+ + EE + +L L + EKL
Sbjct: 860 ELKEELEELEAEKEE-----LEDELKELEEEKEELE---EELRELESELAELKEEIEKLR 911
Query: 890 EKIMEHYRKLDSCSS 904
E++ E KL+
Sbjct: 912 ERLEELEAKLERLEV 926
Score = 48.9 bits (117), Expect = 1e-05
Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 29/370 (7%)
Query: 525 KAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVL 584
S +L+ +E+E L Q+E E EL LK E+ L+ + + L L
Sbjct: 658 NKRSSLAQKRELKELEEELAELEAQLEKLEEEL---KSLKNELRSLEDLLEELRRQLEEL 714
Query: 585 QNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDE 644
+ L K + L+ L++L + E LE++ E L ++L E + E
Sbjct: 715 ERQLEELKRELAALEEELEQL---QSRLEELEEELEELEEELEELQERLEELEEELESLE 771
Query: 645 SSLN--NAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQL 702
+L ++E + Q+ L L+ A +L + L ++ ++ + E+L
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL-----DALERELESLEQRRERL 826
Query: 703 NMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLR 762
E E + +EI+ L+ L +++ E + ++++ +LK E L+AE E+L L L
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL---EDELKELE 883
Query: 763 AEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAIS 822
E +L+++ R L + +LK + E +E + L + E E ++
Sbjct: 884 EEKEELEEELRELESELAELKEE-IEKLRERL-EELEAKLERLEVELPELEEELEEEYED 941
Query: 823 ALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLH 882
L +L + +LE++ L NL A +E+ + E + + +L
Sbjct: 942 TLETELEREIERLEEEIEALGP--VNLRA---------IEEYEEVEERYEELKSQREDLE 990
Query: 883 RQKEKLEEKI 892
KEKL E I
Sbjct: 991 EAKEKLLEVI 1000
Score = 46.2 bits (110), Expect = 1e-04
Identities = 74/352 (21%), Positives = 157/352 (44%), Gaps = 29/352 (8%)
Query: 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKE------HVSLTKQIEDQE 554
+++YK + E+++++ +E LE + L++L +LE +E++ + L ++ + E
Sbjct: 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELE 226
Query: 555 NEL--KKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQ 612
L K +L++E++EL+ + + L LQ +L + + LK+ L++L +++
Sbjct: 227 LALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286
Query: 613 TDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTA 672
+ L++ + L L +E +LE L+ + +I +L +
Sbjct: 287 QEELLELKEEIEE---LEGEISLLRERL--EELENELEELEERLEELKEKIEALKEE--- 338
Query: 673 LQLANSQLILANHNELLQDQMTMTKLHEQLNM--------EYESVVKEIKVLKSTLRDVK 724
L + +L +LL + + E+ +E++ +E+ L++ L +++
Sbjct: 339 --LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Query: 725 NENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKA 784
NE + +K + L+ E L +E LK E L L AE +L+ + L E+L+
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEE---LKELEAELEELQTELEELNEELEELEE 453
Query: 785 DFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLE 836
L++ K E +L L LE EL++ + + L + Q
Sbjct: 454 QLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
Score = 45.1 bits (107), Expect = 2e-04
Identities = 54/256 (21%), Positives = 116/256 (45%), Gaps = 20/256 (7%)
Query: 652 LEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVK 711
L LK + ++ L + + L+ + + E ++ + E+L E E + +
Sbjct: 230 LLAKLKELRKELEELEEELSRLE-EELEELQEELEEAEKEIEELKSELEELREELEELQE 288
Query: 712 EIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDD 771
E+ LK + +++ E ++E+ +L+ E L+ +E+LK + L+ E + +
Sbjct: 289 ELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK---EKIEALKEELEERETL 345
Query: 772 FRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY 831
L E+L A+ +EE + KL+ L ELE + ++ L +L++
Sbjct: 346 LEEL----EQLLAELEEAKEEL------EEKLSALLEELEELFEALREELAELEAELAEI 395
Query: 832 QNKLEDDRRKL------MEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQK 885
+N+LE+ +R++ +E ++ L E L + + E + +++L L Q
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455
Query: 886 EKLEEKIMEHYRKLDS 901
E+L +++ E R+L
Sbjct: 456 EELRDRLKELERELAE 471
Score = 40.1 bits (94), Expect = 0.007
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 21/270 (7%)
Query: 198 RLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINR 257
L + + E + L + L+ +L + ELEE L ELE + R
Sbjct: 766 ELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRER 825
Query: 258 MKAEMLELRAEARSGKA----LESEIQRYKDKLT----DLEYYKSRVEELRQDNRAINEI 309
++ E+ EL E + LE E++ + +L +LE ++ EEL + + + E
Sbjct: 826 LEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE 885
Query: 310 ALERDANAEKLQQLIEE--NTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQL 367
E + +L+ + E L + + V+L +L + + L
Sbjct: 886 KEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT--L 943
Query: 368 TSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRR 427
+ + + RLE E + L ++ A E E+E+ ++L Q EDLEE K +
Sbjct: 944 ETELEREIERLEEEIEAL----GPVNLRAI----EEYEEVEERYEELKSQREDLEEAKEK 995
Query: 428 LSAQCTEYES-KFTKLETEIRKINESYQNL 456
L E + K + + KINE++ +
Sbjct: 996 LLEVIEELDKEKRERFKETFDKINENFSEI 1025
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 65.6 bits (160), Expect = 9e-11
Identities = 123/636 (19%), Positives = 263/636 (41%), Gaps = 37/636 (5%)
Query: 273 KALESEIQRYKDKLTDLEYYKSRVEEL----RQDNRAINEIALERDANAEKLQQLIEENT 328
K+ E + D+L LE Y+ E L ++ I E+ + E ++ L+E
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209
Query: 329 NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLST 388
K + + + ++ E+ + + + RLE RLL
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEI--------EALEERLAELEEEKERLEELKARLLE- 260
Query: 389 IESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
IESL A E + ELE+ ++L ++E LEE +R + + E L E+ +
Sbjct: 261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREI-EELEEELEGLRALLEELEE 319
Query: 449 INESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKL 508
+ E ++LE +++ ++L+ + E ++L + EL + ++L E + E + +L
Sbjct: 320 LLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAK--LLEERLKELEERLEELEKEL 377
Query: 509 ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568
+ +K+ +EA++ E L +L+ LE +++E L K++E+ E EL++ + ++++
Sbjct: 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLE 437
Query: 569 ELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEI 628
E ++ + + ++ L + L +K ++ LE+ LS +
Sbjct: 438 EQINQLESKELMIAELAGAGEKCPVCGQELPEEHEK--ELLELYELELEELEEELSREKE 495
Query: 629 LNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNEL 688
+++++ E E +L L+ ++ L + L+ +L
Sbjct: 496 EAELREEI--EELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
Query: 689 LQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEM 748
LQ + E E + +++E+++ LR K E + ++E+ +LK + L+ +
Sbjct: 554 LQQLKEELRQLEDRLQELKELLEELRL----LRTRKEELEELRERLKELKKKLKELEERL 609
Query: 749 EQLK--FESHSLSNLRAEHSKLKDDFRILFTANEK---LKADFRALQEEHKGNHM---EK 800
QL+ +S LS E + +++ L+ +A EE + +
Sbjct: 610 SQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAE 669
Query: 801 RKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHS 860
+ L E E +L + + + L +L + + +LE+ +KL E + L
Sbjct: 670 IRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEE-----LESR 724
Query: 861 LEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHY 896
+ + +E + L L +EKL + +
Sbjct: 725 KAELEELKKELEKLEKALELLEELREKLGKAGLRAD 760
Score = 55.2 bits (133), Expect = 2e-07
Identities = 112/545 (20%), Positives = 208/545 (38%), Gaps = 33/545 (6%)
Query: 402 ERILELEKEKKKLSLQVEDL-----EETKRRLSAQCTEYESKFTKLETEIRKINESYQNL 456
+I ELE + +L +EDL EE K + + E + +LE EI + E L
Sbjct: 185 AKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAEL 244
Query: 457 ELQ----IQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCE 512
E + +++ L+ + E + L+ + +EL + ++L E + E + ++ E
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304
Query: 513 KEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
+E++ + LE E L+KL + E +EK L K + E ++ N+L + ++E
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364
Query: 573 KYQVDKNTLSV-LQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNA 631
+ + L L+ L K ++ ++L + + LE++ E L
Sbjct: 365 ELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424
Query: 632 VKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQD 691
++L E E +N L++ + I+ L + +L + ELL
Sbjct: 425 ELEELEEEIKKLEEQIN------QLESKELMIAELAGAGEKCPVCGQELPEEHEKELL-- 476
Query: 692 QMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQL 751
E +E E + +E+ K + + KE + E L+ E
Sbjct: 477 --------ELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALK 528
Query: 752 KFESHSLSNLRAEHSKLKDDFRILFT--ANEKLKADFRALQEEH--KGNHMEKRKLTLSL 807
+ L L +L++ L E+L+ LQE R L
Sbjct: 529 EELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL 588
Query: 808 TELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHY 867
EL L + L +LS+ + L+ E N L + E L LE +
Sbjct: 589 EELRERLKELKKKLKELEERLSQLEELLQSLELSEAE---NELEEAEEELESELEKLNLQ 645
Query: 868 HEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSELI 927
E E+ L L + E+LE +I +++++ +K L ++ + EL
Sbjct: 646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE 705
Query: 928 NKSRK 932
+K
Sbjct: 706 ELLKK 710
Score = 54.8 bits (132), Expect = 2e-07
Identities = 111/538 (20%), Positives = 227/538 (42%), Gaps = 28/538 (5%)
Query: 224 KSKLRKQRLELEEKSEHLTESRDELE-HHKALINRMKAEMLELRAEARSGKALESEIQRY 282
+ +L ++ LEE+ L E ++ LE L+ E+ L+ + LE ++
Sbjct: 227 EEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEEL 286
Query: 283 KDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLS-LLSKSNQCVD 341
++K+ LE + +EEL ++ + + E + EKL+ L E L L K ++
Sbjct: 287 EEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346
Query: 342 NQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESG 401
+ +L L L E+L K L LE + L + E
Sbjct: 347 ELAEEKNELAKLLE--ERLKELEERL--EELEKELEKALERLKQLEEAIQELKEELAELS 402
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLE---L 458
+ E+++E ++L ++E+LE L + + E + +LE++ I E E +
Sbjct: 403 AALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPV 462
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
Q +E + E +LE +ELE + K+ + EEI E + +L E+E+ +
Sbjct: 463 CGQELPEEHEKELLELYELE--LEELEEELSREKEEAELREEIEELEKELRELEEELIEL 520
Query: 519 KEALESKAESLDKLTNKLESM--EKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQV 576
E E+ E L++ KLE++ E E + Q++ + EL++ D +E+ EL + ++
Sbjct: 521 LELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRL 580
Query: 577 DKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKL 636
+ L+ K LK L++ +++ + + E E ++ +L
Sbjct: 581 LRTRKEELEELRERLKELKKKLK-ELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639
Query: 637 GVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQ-HTALQLANSQLILANHNELLQDQMTM 695
+ + L+ L+ + ++ L ++ LQ ++ L E L
Sbjct: 640 EK---LNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEEL------ 690
Query: 696 TKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKF 753
EQL E E + +E++ L L +++ + ++ + ++L+ + L+ + L+
Sbjct: 691 ----EQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL 744
Score = 48.2 bits (115), Expect = 2e-05
Identities = 99/487 (20%), Positives = 182/487 (37%), Gaps = 41/487 (8%)
Query: 184 KALAKERDRYLQTWRLVEEKRNPSI-GNSECQHLAVELADLKSKLRKQRLELEEKSEHLT 242
L + L+ ++ EE+ E + L +L+ ++ + ELE L
Sbjct: 256 ARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLE 315
Query: 243 ESRDELEHHKALINR----------MKAEMLELRAEARSGKALESEIQR-YKDKLTDLEY 291
E + LE K+L R +++E+ EL E L E + +++L +LE
Sbjct: 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEK 375
Query: 292 YKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSN------QCVDNQSV 345
+ E + + E A + I+E + +
Sbjct: 376 ELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKK 435
Query: 346 SSVDLNDLASPGSGDNSLSEQ-----------LTSSAQAKALRLELENKRLLSTIESLHE 394
+N L S L+ + ELE + L + E
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE 495
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454
A E I ELEKE ++L ++ +L E + L + E K L E+ ++ E Q
Sbjct: 496 EAELR--EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQ 553
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKE 514
+L+ EL + Q+L+ +EL L ++L E + E K KL E+
Sbjct: 554 LQQLKE-----ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEER 608
Query: 515 IKKCKEALESKAESLDK--LTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
+ + +E L+S S + L E +E E L Q E +E +L+ +++EL++
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668
Query: 573 KYQ---VDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEIL 629
+ + L+ L + L+ ++L + + E ++E++ S L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728
Query: 630 NAVKKKL 636
+KK+L
Sbjct: 729 EELKKEL 735
Score = 33.2 bits (76), Expect = 0.76
Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 55/340 (16%)
Query: 218 VELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALES 277
+ +++LR++ ELE++ L E EL + + E LE
Sbjct: 490 LSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELK 549
Query: 278 EIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSN 337
E + + +L + R++EL++ + + ++ E ++L E L
Sbjct: 550 EKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLK------ 603
Query: 338 QCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLH-ENA 396
LE +L ++SL A
Sbjct: 604 ---------------------------------------ELEERLSQLEELLQSLELSEA 624
Query: 397 FYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNL 456
E E ELE E +KL+LQ E + L A E E K +LE EIR+ + +N
Sbjct: 625 ENELEEAEEELESELEKLNLQ----AELEELLQAALEELEEKVEELEAEIRRELQRIENE 680
Query: 457 ELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIK 516
E + +L+ + + +++LE +ELE ++ ++ EE+ K +L +KE++
Sbjct: 681 EQLEE----KLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELE 736
Query: 517 KCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE 556
K ++ALE E L + K +L QIE + NE
Sbjct: 737 KLEKALE-LLEELREKLGKAGLRADILRNLLAQIEAEANE 775
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 63.7 bits (155), Expect = 3e-10
Identities = 158/688 (22%), Positives = 277/688 (40%), Gaps = 154/688 (22%)
Query: 19 LVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLR-----NASVRIK 73
L+TWL + + EDL DG+ + +V IDPE ++S + ++ N +++
Sbjct: 12 LLTWL-QTFNLSAPCATVEDLTDGVAMAQVLNQIDPEWFNESWLSRIKEDVGDNWRLKVS 70
Query: 74 NFNTIVKNIKSLYEEELCQIV--LVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCP 131
N I++ I Y++ L Q + +LPD+ +I K + LL L+LGCAV C
Sbjct: 71 NLKKILQGIYDYYQDVLGQQLSEFLLPDLNLIAE----KSDPAELGRLLQLILGCAVNCE 126
Query: 132 NKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTE----VMVSNVKALA 187
K+ +I++I L QH ++ I Q +++ S + + ++K
Sbjct: 127 EKQEYIQQIMTLEESVQHVVMTAI-QELMSKEQGSSPSRESAGNLDQQLKKALEDLKEAQ 185
Query: 188 KERDRYLQTWR--------LVEEKRN----------------------PSIGNSECQHLA 217
+E+D Q L EEK + +G+ + L
Sbjct: 186 EEKDELAQRCHELDKQVLLLQEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYNLLQ 245
Query: 218 VELADLKSK----------LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRA 267
+L L+ + R + ELE++ L DEL A +K E+ LR
Sbjct: 246 SQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRNDELTSLAAESQALKDEIDVLRE 305
Query: 268 EARSGKALESEIQRYKDKLTDLEYYKSRV------------------EELRQDN------ 303
+ K LE++++ YK KL DL + +V EEL++ N
Sbjct: 306 SSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQLEEELKKANAARGQL 365
Query: 304 ----RAINEIALERDANAEKLQQLIEENTNL------------SLLSKSN---------Q 338
R + E+ + ++K +L E L LL++ + +
Sbjct: 366 ETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEALQKEKERLLAERDSLRETNEELR 425
Query: 339 CVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFY 398
C Q + SP SGDN +E L S + K +RL+ ENK L E
Sbjct: 426 CGQAQQDQLTQADAGTSP-SGDNLAAELLPSEYREKLIRLQHENKMLRLGQEG------- 477
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
ERI EL++ + + + +L ET+ RL+ Q I ++ + ++L+
Sbjct: 478 SENERITELQQLLEDANRRNNEL-ETQLRLANQ-------------RILELQQQVEDLQK 523
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYK-TKLANCEKEIKK 517
+Q + + ++ + K KLE + LE E N++L E+I E + + N ++I +
Sbjct: 524 ALQEQGSKSEDSSLLKSKLE---EHLEQLHEANEELQKKREQIEELEPDQDQNLSRKIAE 580
Query: 518 CKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKRE-MDELDSKYQV 576
+ AL+ K E + +ME+ + KKY + RE + LD K
Sbjct: 581 LEAALQKKDE-------DMRAMEERY--------------KKYVEKAREVIKTLDPKQNP 619
Query: 577 DKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
+ +L+ L + HL++ +K
Sbjct: 620 ASPEIQLLKKQLTERDKRIRHLESEYEK 647
Score = 35.9 bits (83), Expect = 0.11
Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 56/300 (18%)
Query: 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNRE 473
L Q+E L+E RL A +Y K +LE E+ ++Q RNDEL ++ E
Sbjct: 244 LQSQLEQLQEENFRLEAARDDYRIKCEELEKEL-----------AELQHRNDELTSLAAE 292
Query: 474 KQKLEWKNKELELNMEINKQLSNNTEEINEYKTKL---ANCEKEIKKCKE---------- 520
Q L+ E+++ E + + ++ YK KL + +++K +E
Sbjct: 293 SQALK---DEIDVLRESSDKAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTV 349
Query: 521 ALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY---QVD 577
LE + + + +LE+ +++ L ++ + E KK + L+ E L+ K Q +
Sbjct: 350 QLEEELKKANAARGQLETYKRQVQELHAKLSE---ESKKADKLEFEYKRLEEKLEALQKE 406
Query: 578 KNTLSVLQNDL--VNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEI------L 629
K L ++ L NE+L+ D+L A + + + L L E L
Sbjct: 407 KERLLAERDSLRETNEELRCGQA--QQDQLTQADAGTSPSGDNLAAELLPSEYREKLIRL 464
Query: 630 NAVKKKL-------------GVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLA 676
K L ++ ++++ N +LE L+ + +I L Q LQ A
Sbjct: 465 QHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKA 524
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 62.8 bits (153), Expect = 7e-10
Identities = 75/372 (20%), Positives = 150/372 (40%), Gaps = 62/372 (16%)
Query: 219 ELADLKSKLRKQRLELEEKS---EHLTESRDELEHHKALINRMKAEMLELRAEARSGKAL 275
EL +++ + + L ++EK E L R++ E ++AL + E + +AL
Sbjct: 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQAL--LKEKREYEGYELLKEKEAL 235
Query: 276 ESEIQRYKDKLTDLEYYKSRVEELRQDNRA-INEIALERDANAEKLQQLIEENTN----- 329
E + + + +L LE ++ E + + EI + +K++ L EE
Sbjct: 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
Query: 330 -LSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLST 388
L ++ + + +L D A+ + +LE E +LL+
Sbjct: 296 IGELEAEIASLERSIAEKERELED------------------AEERLAKLEAEIDKLLAE 337
Query: 389 IESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
IE L I E K + KL+ + +L+E L A+ E + +F + E++
Sbjct: 338 IEELER--------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
Query: 449 INESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKL 508
E + L E++ + RE +L+ + + L EE+ + +
Sbjct: 390 YREKLEKL-------KREINELKRELDRLQEELQRLS-------------EELADLNAAI 429
Query: 509 ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYND----LK 564
A E +I + +E E KA + K KLE + + +++ D + E + L+
Sbjct: 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
Query: 565 REMDELDSKYQV 576
RE+ E +++ +
Sbjct: 490 RELAEAEAQARA 501
Score = 60.5 bits (147), Expect = 4e-09
Identities = 72/362 (19%), Positives = 162/362 (44%), Gaps = 35/362 (9%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE- 268
+ L EL+ L+S+LR+ L+E S+ L+++ ++ + I +++ E +L+
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
Query: 269 ---ARSGKALESEIQRYKDKLTDLEYYKSRVEE-LRQDNRAINEIALERDANAEKLQQLI 324
+LE EI+ K +L +LE +EE L + A+N++ E + ++ ++
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL--EARLSHSRIPEIQ 797
Query: 325 EENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKR 384
E LSK + V ++ + L+ + EL+ +R
Sbjct: 798 AE------LSKLEEEVSRIEARLREI---------EQKLNRLTLEKEYLEKEIQELQEQR 842
Query: 385 LLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLET 444
+ + + I L +K++L ++E+LE R L ++ + + + +LE
Sbjct: 843 IDL------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
Query: 445 EIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEY 504
++R++ + LE QI+ + L + + + LE + E+E ++++ + +
Sbjct: 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956
Query: 505 KTKLANCEKEIK-------KCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL 557
+ +L E+EI+ + E + LD+L K +E+E ++ ++IE+ E +
Sbjct: 957 QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
Query: 558 KK 559
++
Sbjct: 1017 RE 1018
Score = 57.8 bits (140), Expect = 3e-08
Identities = 65/299 (21%), Positives = 124/299 (41%), Gaps = 31/299 (10%)
Query: 392 LHENAFYESGERILELEKEKKKLSLQVEDLEET----KRRLSAQCTEYESKFTKLETEIR 447
E YE + LE++K+ + Q+ LEE +S E LE +
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
Query: 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINEYKT 506
KI + + +L+++ +++ + E LE E E +E ++L+ EI++
Sbjct: 280 KIKDLGEEEQLRVK---EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
Query: 507 KLANCEKEIK-------KCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
++ E+EI+ K E E L+ L +LE ++KE +++D +L+K
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
Query: 560 Y----NDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDA 615
N+LKRE+D L + Q L+ L + + K L+ + L
Sbjct: 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE------- 449
Query: 616 ENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQ 674
++K E L A K E ++ + + ++E +L Q +++ +Q A +
Sbjct: 450 ---IKKQEWKLEQLAADLSKYEQELYDLKEEYD--RVEKELSKLQRELAEAEAQARASE 503
Score = 55.5 bits (134), Expect = 1e-07
Identities = 60/393 (15%), Positives = 155/393 (39%), Gaps = 33/393 (8%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
+ L + + L ++ L+ RR+ + E + + +I +I + + LE + +
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
Query: 462 VRNDELDNMNREKQKLEWKNKELELNM-EINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
+ L+ + + LE + + ++ + E+ ++ E++++ + L + E +
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--- 790
Query: 521 ALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNT 580
+ ++ +L +E+E + ++ + E +L N L E + L+ + Q +
Sbjct: 791 ------SRIPEIQAELSKLEEEVSRIEARLREIEQKL---NRLTLEKEYLEKEIQELQEQ 841
Query: 581 LSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILS--SPEILNAVKKKLGV 638
L+ + + + + +L ++L +++ A LE L E + +
Sbjct: 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
Query: 639 EHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKL 698
E +E K L ++++ +L + + ++ + E
Sbjct: 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE----------- 950
Query: 699 HEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSL 758
+ E V E++ ++ +R ++ N ++Y ++ + L+ + +L+ E ++
Sbjct: 951 -----LSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAI 1005
Query: 759 SNLRAEHSKLKDD-FRILFTA-NEKLKADFRAL 789
E+ K K + F F A NE F L
Sbjct: 1006 LERIEEYEKKKREVFMEAFEAINENFNEIFAEL 1038
Score = 55.5 bits (134), Expect = 1e-07
Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 14/229 (6%)
Query: 365 EQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEET 424
E + + + IE L + ER+ ELE++ L ++E+++
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK-ERLEELEEDLSSLEQEIENVKSE 759
Query: 425 KRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQK-------L 477
+ L A+ E E KLE + + +I EL + E + +
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREI 817
Query: 478 EWKNKELELNMEINKQLSNNTEEINEY-KTKLANCEKEIKKCKEALESKAESLDKLTNKL 536
E K L L E ++ +E K ++ + EKEI+ E E L++L L
Sbjct: 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
Query: 537 ESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQ 585
+E L K+ ++ E +L++ L+R+++EL+++ + + LS L+
Sbjct: 878 RDLESRLGDLKKERDELEAQLRE---LERKIEELEAQIEKKRKRLSELK 923
Score = 50.5 bits (121), Expect = 4e-06
Identities = 65/341 (19%), Positives = 135/341 (39%), Gaps = 40/341 (11%)
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
E +++ L +E++K + + L + KR E + LE + I +LE
Sbjct: 195 EKRQQLERLRREREKA-ERYQALLKEKREYEG--YELLKEKEALERQKEAIERQLASLEE 251
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE-EINEYKTKLANCEKEIKK 517
+++ +E+ + + LE + LE E+NK++ + E E K K+ E EI
Sbjct: 252 ELEKLTEEISELEKR---LEEIEQLLE---ELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
Query: 518 CKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVD 577
+ ++ K L+ +L +E E L +IE+ E E++ + ++ D+L +Y
Sbjct: 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAEL 362
Query: 578 KNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLG 637
K L L+ +L + ++ L ++ N L++ L +L
Sbjct: 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD----------RLQ 412
Query: 638 VEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTK 697
E L A L + +++I+ L + L E+ + + + +
Sbjct: 413 EELQRLSEEL--ADLNAAIAGIEAKINELEEEKEDKAL-----------EIKKQEWKLEQ 459
Query: 698 LHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLK 738
L L +E+ LK V+ E ++ + ++ +
Sbjct: 460 LAADL----SKYEQELYDLKEEYDRVEKELSKLQRELAEAE 496
Score = 47.8 bits (114), Expect = 3e-05
Identities = 67/368 (18%), Positives = 162/368 (44%), Gaps = 30/368 (8%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ 493
E++ K K E+ ++ E+ + L+L I + +L+ + RE++K E + L E K+
Sbjct: 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE---RYQALLKE--KR 221
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ 553
E + E + E++ + + L S E L+KLT ++ +EK + + +E+
Sbjct: 222 EYEGYELLKEKEAL----ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL 277
Query: 554 ENELKK-----YNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLA 608
++K +K ++ EL+++ + +++ + +L + + + L+ +DKL
Sbjct: 278 NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKL--- 334
Query: 609 MDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTS 668
+ E + +I E + KL E+ + L L +L+ + +
Sbjct: 335 ---LAEIEELEREI----EEERKRRDKLTEEYAELKEELE--DLRAELEEVDKEFAETRD 385
Query: 669 QHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENK 728
+ + +L NEL ++ + + ++L+ E + I +++ + +++ E +
Sbjct: 386 ELKDYREKLEKLK-REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
Query: 729 TVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRA 788
+ + + E L A++ + L +L+ E+ +++ + L + +A RA
Sbjct: 445 DKALEIKKQEWKLEQLAADLSK---YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
Query: 789 LQEEHKGN 796
+E +G
Sbjct: 502 SEERVRGG 509
Score = 47.0 bits (112), Expect = 5e-05
Identities = 40/204 (19%), Positives = 91/204 (44%), Gaps = 10/204 (4%)
Query: 701 QLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSN 760
++ + + EI L+ ++ + + E + +E+ ++L+ + L AE+E+L+ E
Sbjct: 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERK 350
Query: 761 LR----AEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN 816
R E+++LK++ L E++ +F ++E K + KL + EL+ EL
Sbjct: 351 RRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
Query: 817 RDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHEL------LTHSLEDKDHYHEE 870
+ + LS +L+ + K+ E + E+ L D Y +E
Sbjct: 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
Query: 871 EKNFSDKLNNLHRQKEKLEEKIME 894
+ ++ + + ++ KL+ ++ E
Sbjct: 471 LYDLKEEYDRVEKELSKLQRELAE 494
Score = 41.6 bits (98), Expect = 0.002
Identities = 48/250 (19%), Positives = 97/250 (38%), Gaps = 51/250 (20%)
Query: 203 KRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEM 262
+R+ + E + LA L++++ K E+EE + E R + +K E+
Sbjct: 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
Query: 263 LELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQ 322
+LRAE + ++ E +D+L K E+L + R INE+ E D E+LQ+
Sbjct: 367 EDLRAEL---EEVDKEFAETRDEL------KDYREKLEKLKREINELKRELDRLQEELQR 417
Query: 323 LIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELEN 382
L EE +L+ +A ++ + + LE++
Sbjct: 418 LSEELADLN-------------------AAIAG------IEAKINELEEEKEDKALEIKK 452
Query: 383 KRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKL 442
+ ++ +L + K ++ DL+E R+ + ++ + + +
Sbjct: 453 QE-----------------WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEA 495
Query: 443 ETEIRKINES 452
E + R E
Sbjct: 496 EAQARASEER 505
Score = 40.8 bits (96), Expect = 0.004
Identities = 57/301 (18%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK- 558
E++ +++L E + + + L + + ++ ++E +E+E L +++E+ E +L
Sbjct: 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
Query: 559 ---KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDA 615
+ ++K E+ EL+++ + L+ DL + L+ L + + A
Sbjct: 749 LEQEIENVKSELKELEAR-------IEELEEDLHKLEEALNDLEARLSHSRI---PEIQA 798
Query: 616 E-NILEKILSSPE-ILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTAL 673
E + LE+ +S E L +++KL E LE +++ Q Q L Q ++
Sbjct: 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEY------LEKEIQELQEQRIDLKEQIKSI 852
Query: 674 --QLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVK 731
++ N EL ++ + L + KE L++ LR+++ + + ++
Sbjct: 853 EKEIENLNGKKE---ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
Query: 732 EQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQE 791
Q + + L+A++E L+ E + + + E ++ ++ L E ++A+ + ++E
Sbjct: 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL----EDVQAELQRVEE 965
Query: 792 E 792
E
Sbjct: 966 E 966
Score = 39.7 bits (93), Expect = 0.010
Identities = 55/286 (19%), Positives = 111/286 (38%), Gaps = 46/286 (16%)
Query: 185 ALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTES 244
L K + Q + +K +G E + ++ +L++++ + EK L ++
Sbjct: 262 ELEKRLEEIEQLLEELNKKIKD-LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320
Query: 245 RDELEHHKALINRMKAEMLELRAEARSGK----ALESEIQRYKDKLTDLEYYKSRVEELR 300
+ L +A I+++ AE+ EL E + L E K++L DL + +EE+
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLR---AELEEVD 377
Query: 301 QDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGD 360
++ + E EKL++L E +N+L
Sbjct: 378 KEFAETRD---ELKDYREKLEKLKRE-----------------------INELKRELDRL 411
Query: 361 NSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVED 420
++L+ + L + + I L E E ++ LE++K++ KL D
Sbjct: 412 QEELQRLSE----ELADLNAAIAGIEAKINELEE----EKEDKALEIKKQEWKLEQLAAD 463
Query: 421 LEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDE 466
L + ++ L EY+ ++E E+ K+ E Q + +
Sbjct: 464 LSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEER 505
Score = 33.9 bits (78), Expect = 0.46
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 22/154 (14%)
Query: 176 TEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELE 235
E + + A +E +R ++ R +K L E A+LK +L R ELE
Sbjct: 327 LEAEIDKLLAEIEELEREIEEERKRRDK------------LTEEYAELKEELEDLRAELE 374
Query: 236 EKSEHLTESRDELEHHKALINRMKAEMLELRAEARS----GKALESEIQRYKDKLTDLEY 291
E + E+RDEL+ ++ + ++K E+ EL+ E + L E+ + +E
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
Query: 292 YKSRVEELRQDNRAINEIALERDANAEKLQQLIE 325
+ +EE ++D ALE KL+QL
Sbjct: 435 KINELEEEKED------KALEIKKQEWKLEQLAA 462
Score = 33.5 bits (77), Expect = 0.62
Identities = 43/200 (21%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 737 LKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGN 796
LK SLQ+E+ +++ LS ++ S+ + E+L+ + L+E +
Sbjct: 686 LKRELSSLQSELRRIENRLDELSQELSDASR---KIGEIEKEIEQLEQEEEKLKERLEEL 742
Query: 797 HMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLED-DRRKLMEHVTNLLAQYHE 855
+ L + ++ EL + I L L K + L D + R + + A+ +
Sbjct: 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK 802
Query: 856 LLTHSLEDKDHYHEEEKNFSD---KLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFG 912
L ++ E + KLN L +KE LE++I E + + KS
Sbjct: 803 L-------EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL--KEQIKSIE 853
Query: 913 A---NLVRKVRKAGSELINK 929
NL K + EL
Sbjct: 854 KEIENLNGKKEELEEELEEL 873
Score = 33.5 bits (77), Expect = 0.69
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 29/218 (13%)
Query: 712 EIKVLKSTLRDVK-----NENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHS 766
+ L R+ + E + ++ Q ++ SL+ E+E+L E +S L
Sbjct: 212 RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEE---ISELEKRLE 268
Query: 767 KLKDDFRILFTANEKLKA----DFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAIS 822
+++ N+K+K + ++E+ E L S+ E E EL + ++ ++
Sbjct: 269 EIEQLLE---ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
Query: 823 ALSVQLSKYQNKLED----------DRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEK 872
L ++ K ++E+ R KL E L + E L LE+ D E +
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL-EDLRAELEEVDKEFAETR 384
Query: 873 NFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKS 910
D+L + + EKL+ +I E R+LD ++ S
Sbjct: 385 ---DELKDYREKLEKLKREINELKRELDRLQEELQRLS 419
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 59.7 bits (145), Expect = 6e-09
Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 43/377 (11%)
Query: 227 LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK----ALESEIQ-- 280
LR+ +LEE++E L E ELE +E+ E R + LE EI+
Sbjct: 347 LREDADDLEERAEELREEAAELE----------SELEEAREAVEDRREEIEELEEEIEEL 396
Query: 281 --RYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQ 338
R+ D DL + +EELR++ + E E +A ++ +EE L K +
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456
Query: 339 C----VDNQSVSSVD------------LNDLASPGSGDNSLSEQLTSSAQAKALRLELEN 382
C + V +++ L DL E+ +A+ LE
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEE 516
Query: 383 KRLLSTIESL---HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKF 439
+R +E L E ER EL + +L + E+ E + E +
Sbjct: 517 RR--EDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV 574
Query: 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKEL-ELNMEINKQLSNNT 498
+L +++ ++ E ++LE +I+ + + E ++L K + L ELN E ++L+
Sbjct: 575 AELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKR 633
Query: 499 EEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
E E + + E I++ +E E E L+++ KL+ + +E L +I ENEL+
Sbjct: 634 ERKRELEAEFD--EARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
Query: 559 KYNDLKREMDELDSKYQ 575
+ +L+ + L+++ +
Sbjct: 692 ELEELRERREALENRVE 708
Score = 50.8 bits (122), Expect = 3e-06
Identities = 66/362 (18%), Positives = 148/362 (40%), Gaps = 54/362 (14%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
+L + + L + EL+E+ E E R+ +A +A +
Sbjct: 203 DLHERLNGLESELAELDEEIERYEEQRE-------------------QARETRDEA-DEV 242
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQ 338
++ ++++ +LE ++ +E+LR+ I E ER+ AE+++ L E L + +
Sbjct: 243 LEEHEERREELETLEAEIEDLRET---IAETEREREELAEEVRDLRE--RLEELEEERDD 297
Query: 339 CVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL-----LSTIESLH 393
+ + D + + + + + LR LE R+ ESL
Sbjct: 298 LLAEAGLDDADAEAVE---------ARREELEDRDEELRDRLEECRVAAQAHNEEAESLR 348
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
E+A +LE+ ++L + +LE + + +LE EI ++ E +
Sbjct: 349 EDA--------DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERF 400
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEK 513
+ + + D L+ + E+ +L + ELE + ++ E + E K C +
Sbjct: 401 GDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLE-AGKCPECGQ 459
Query: 514 EIKKCK--EALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELD 571
++ E +E E +++L +LE +E+E + +++E + + + ++ L+
Sbjct: 460 PVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLE----RAEDLVEAEDRIERLE 515
Query: 572 SK 573
+
Sbjct: 516 ER 517
Score = 38.9 bits (91), Expect = 0.014
Identities = 82/420 (19%), Positives = 161/420 (38%), Gaps = 68/420 (16%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEAR-------- 270
EL L++++ R + E E +E+ + + ++ E +L AEA
Sbjct: 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
Query: 271 ------------------------SGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAI 306
+ +A E + ++ DLE R EELR++ +
Sbjct: 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE---ERAEELREEAAEL 368
Query: 307 N-EIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLND-LASPGSGDNSLS 364
E+ R+A ++ +++ E + L + + V + D L + L
Sbjct: 369 ESELEEAREAVEDRREEIEELEEEIEELRER---FGDAPVDLGNAEDFLEELREERDELR 425
Query: 365 EQLTS-SAQAKALRLEL-ENKRLL----------STIESLHENAFYESGERILELEKEKK 412
E+ A + R + E + LL S H E ER+ ELE E +
Sbjct: 426 EREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELE 485
Query: 413 KLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNR 472
L +VE++EE R + E I ++ E ++LE I R + ++
Sbjct: 486 DLEEEVEEVEERLERAED--------LVEAEDRIERLEERREDLEELIAERRETIEEKRE 537
Query: 473 EKQKLEWKNKELELNMEINKQLSNNT-EEINEYKTKLANCEKEIKKCKEALESK---AES 528
++L + ELE E ++ + EE E + ++A ++ + KE +ES
Sbjct: 538 RAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
Query: 529 LDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKRE-MDELDSKYQVDKNTLSVLQND 587
L + + + +E+ + + + +E ++ KRE EL+++ D+ + + D
Sbjct: 598 LAAIADAEDEIERLREKR-EALAELNDERRERLAEKRERKRELEAE--FDEARIEEARED 654
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 57.0 bits (138), Expect = 4e-08
Identities = 115/548 (20%), Positives = 234/548 (42%), Gaps = 34/548 (6%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
K ++ +E E E + + E+ +E ++S ++ +L E +L +
Sbjct: 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
Query: 434 EYE---SKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEI 490
E E + +LE E+ + S + LE +I+ + ++ + +E ++LE K KEL+ E
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
Query: 491 NKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNK---LESMEKEHVSLT 547
++ +E EY +L EK + + +E + E + +L K LE ++K+ L
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
Query: 548 KQIEDQENELKKYNDLKREMDELDS-KYQVDKNTLSVLQNDLVN-EKLKTT---HLKNSL 602
K++E+ E + Y + K + +EL+ K ++ T L+ +L EK K +
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
Query: 603 DKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFND---ESSLNNAKLEVDLKTS 659
++G + + + +E++ + ++L EH + E + ++E +LK
Sbjct: 412 ARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEI 471
Query: 660 QSQISSLTSQHTALQ--LANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLK 717
+ + L + L+ L ++ Q + KL + E E +E + LK
Sbjct: 472 EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
Query: 718 STLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRIL-F 776
L +K E K++K++ +L+ + AE+E L L E ++L + L F
Sbjct: 532 EKLIKLKGEIKSLKKELEKLE-ELKKKLAELE------KKLDELEEELAELLKELEELGF 584
Query: 777 TANEKLKADFRALQEEH------KGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSK 830
+ E+L+ + L+ + K E + L +LE EL + ++ +L +
Sbjct: 585 ESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE 644
Query: 831 YQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDK----LNNLHRQKE 886
+ +LE+ +K E L + + L+ L EE + ++ L L + E
Sbjct: 645 LRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
Query: 887 KLEEKIME 894
+ E+ E
Sbjct: 705 EREKAKKE 712
Score = 53.9 bits (130), Expect = 4e-07
Identities = 89/410 (21%), Positives = 172/410 (41%), Gaps = 42/410 (10%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
EL L + +LEEK L E +EL+ + E+ EL+ +A L
Sbjct: 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTN-LSLLSKSN 337
+ Y D+L ++E SR+EE + E++ E+L++ ++E L L + +
Sbjct: 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERH 361
Query: 338 QCVDNQSVSSVDLNDLASPGSGDN--SLSEQLTSSAQAKALRLELENKRLLSTIESLHEN 395
+ + +L L +G L ++L +AK +E E ++ + I L +
Sbjct: 362 ELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAK-EEIEEEISKITARIGEL-KK 419
Query: 396 AFYESGERILELEKEK-------------------KKLSLQVEDLEETKRRLSAQCTEYE 436
E + I EL+K K ++ + +++ +E+ + + + +
Sbjct: 420 EIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLR 479
Query: 437 SKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELE-LNMEINK--- 492
+ +LE ++K +E + EL Q++ E ++LE K +E E L ++ K
Sbjct: 480 KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
Query: 493 ---QLSNNTEEINEYKTKLANCEKEIKKCKEALE-----------SKAESLDKLTNKLES 538
L E++ E K KLA EK++ + +E L E L++ +LE
Sbjct: 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
Query: 539 MEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588
E++ L ++ E E K+ L+ E+D+ + + L L+ +L
Sbjct: 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649
Score = 53.5 bits (129), Expect = 5e-07
Identities = 114/597 (19%), Positives = 234/597 (39%), Gaps = 80/597 (13%)
Query: 225 SKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKA----LESEIQ 280
+++ + EL E+ E L + ELE K I ++ E+ L R + LE I+
Sbjct: 210 NEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
Query: 281 RYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCV 340
K ++ +LE ++EL++ +++ + ++L+++ + + L
Sbjct: 270 ELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI------ 323
Query: 341 DNQSVSSVDLNDLASPGSGDNSLSEQLT--SSAQAKALRLELENKRLLSTIESLHENAFY 398
N + E++ + + L+ + K L +E L E +
Sbjct: 324 --------------------NGIEERIKELEEKEERLEELKKKLKELEKRLEELEE--RH 361
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
E E ++E ++L ++ L T +L + E E ++E EI KI L+
Sbjct: 362 ELYEEAKAKKEELERLKKRLTGL--TPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
+I+ ++ + + K K +EL E + EY +L EKE+K+
Sbjct: 420 EIKELKKAIEELKKAKGKCPVCGRELTEEHR--------KELLEEYTAELKRIEKELKEI 471
Query: 519 KEALESKAESLDKLTNKLESMEK--EHVSLTKQIEDQENELKKYNDLK-----REMDELD 571
+E + L +L L+ + + L +Q+++ E +LKKYN + E ++L
Sbjct: 472 EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK 531
Query: 572 SKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNA 631
K K + L+ +L + LK L + +K+ E L
Sbjct: 532 EKLIKLKGEIKSLKKELEKLEE----LKKKL-------------AELEKKLDELEEELAE 574
Query: 632 VKKKLGVEHFNDESSLNNAKLE--------VDLKTSQSQISSLTSQHTALQLANSQLILA 683
+ K+L F L E ++LK ++ ++ + L+ +
Sbjct: 575 LLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDK-AFE 633
Query: 684 NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYES 743
E + + K E+L +Y +E + L+ ++ E ++ + +L+ E
Sbjct: 634 ELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRREE 691
Query: 744 LQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEK 800
++ +E+LK E + E KL+ + EK+K ++AL +E + + +
Sbjct: 692 IKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVK-KYKALLKERALSKVGE 747
Score = 44.3 bits (105), Expect = 3e-04
Identities = 100/413 (24%), Positives = 186/413 (45%), Gaps = 37/413 (8%)
Query: 180 VSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSE 239
V +K L ++ + Y+ +L E E + L + + + ++ ELEEK E
Sbjct: 282 VKELKELKEKAEEYI---KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
Query: 240 HLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTD---------LE 290
L E + +L+ + + ++ E EL EA KA + E++R K +LT LE
Sbjct: 339 RLEELKKKLKELEKRLEELE-ERHELYEEA---KAKKEELERLKKRLTGLTPEKLEKELE 394
Query: 291 YYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQC-VDNQSVSSVD 349
+ EE+ ++ I E ++L++ IEE L +C V + ++
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE-----LKKAKGKCPVCGRELTEEH 449
Query: 350 LNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHE-NAFYESGERILELE 408
+L + + E+ + K +L E + L ++ E E E++ ELE
Sbjct: 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELE 509
Query: 409 KEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKIN---ESYQNLELQIQVRND 465
++ KK +L E+LE+ + + K KL+ EI+ + E + L+ ++
Sbjct: 510 EKLKKYNL--EELEKKAEEYE----KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEK 563
Query: 466 ELDNMNREKQKLEWKNKEL--ELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
+LD + E +L + +EL E E+ ++L NEY +L + EKE+++ ++ L+
Sbjct: 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY-LELKDAEKELEREEKELK 622
Query: 524 SKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL--KKYNDLKREMDELDSKY 574
E LDK +L EK L K++E+ E + ++Y +L+ E EL +
Sbjct: 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSREL 675
Score = 39.7 bits (93), Expect = 0.009
Identities = 93/461 (20%), Positives = 189/461 (40%), Gaps = 75/461 (16%)
Query: 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQL 494
YE+ + L I++I + LE I+ R + ++ + +EK+K ELE + ++
Sbjct: 160 YENAYKNLGEVIKEIKRRIERLEKFIK-RTENIEELIKEKEK------ELEEVLREINEI 212
Query: 495 SNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQE 554
S+ E+ E KL KE+++ KE +E + L+ L +E++ L ++IE+ +
Sbjct: 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
Query: 555 NELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTD 614
E+++ + +E+ EL ++ ++ KL ++ D
Sbjct: 273 KEIEELEEKVKELKEL--------------------KEKAEEYI-----KLSEFYEEYLD 307
Query: 615 AENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQ 674
+EK LS E ++ E E L +L+ LK + ++ L +H +
Sbjct: 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLE--ELKKKLKELEKRLEELEERHELYE 365
Query: 675 LANSQLILANHNELLQDQMTMTKLHEQL-NMEYESVVKEIKVLKSTLRDVKNENKTVKEQ 733
E + + +L ++L + E + KE++ L+ +++ E + +
Sbjct: 366 ------------EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
Query: 734 YSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEH 793
+LK + L+ +E+LK A K R L EEH
Sbjct: 414 IGELKKEIKELKKAIEELK------------------------KAKGKCPVCGRELTEEH 449
Query: 794 KGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRR--KLMEHVTNLLA 851
+ + + T L +E EL ++ L +L + + L+ + KL E L
Sbjct: 450 RKELL--EEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKE 507
Query: 852 QYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKI 892
+L ++LE+ + EE + +KL L + + L++++
Sbjct: 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKEL 548
Score = 36.6 bits (85), Expect = 0.070
Identities = 113/559 (20%), Positives = 237/559 (42%), Gaps = 73/559 (13%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
ENA+ GE I E+++ ++L ++ E + + + E + ++ EI +I+
Sbjct: 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEK----EKELEEVLREINEISSEL 216
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEK 513
L +EL+ + +E ++LE EEI E + +L + E
Sbjct: 217 PELR-------EELEKLEKEVKELE-----------------ELKEEIEELEKELESLEG 252
Query: 514 EIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSK 573
+K +E + E +++L ++E +E++ K++++ + + ++Y L +E +
Sbjct: 253 SKRKLEEKIRELEERIEELKKEIEELEEK----VKELKELKEKAEEYIKLSEFYEEYLDE 308
Query: 574 YQVDKNTLSVLQN----------DLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKIL 623
+ + LS L+ +L ++ + LK L +L +++ + + E+
Sbjct: 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK 368
Query: 624 SSPEILNAVKKKLG---VEHFNDE-SSLNNAKLEV--DLKTSQSQISSLTSQHTALQLAN 677
+ E L +KK+L E E L AK E+ ++ ++I L + L+ A
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI 428
Query: 678 SQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQL 737
+L A + + + ++L EY + L+ ++ E K ++E+ +L
Sbjct: 429 EELKKAKGKCPVCGRELTEEHRKELLEEY----------TAELKRIEKELKEIEEKERKL 478
Query: 738 KVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNH 797
+ L+ +++ E KLK+ L EKLK + EE +
Sbjct: 479 RKELRELEKVLKKES-----------ELIKLKELAEQLKELEEKLK---KYNLEELEKKA 524
Query: 798 MEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELL 857
E KL L +L+GE+ + + L +L K +LE +L E + LL + EL
Sbjct: 525 EEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKELEELG 583
Query: 858 THSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVR 917
S+E+ + +E + F ++ L +++LE + E + + + ++ + +
Sbjct: 584 FESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLE 643
Query: 918 KVRKAGSELINKSRKSWHE 936
++RK EL K + +E
Sbjct: 644 ELRKELEELEKKYSEEEYE 662
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 50.8 bits (122), Expect = 3e-06
Identities = 73/388 (18%), Positives = 145/388 (37%), Gaps = 67/388 (17%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDEL----------EHHKALINRMKAEMLELRAE 268
EL L+ K+ + E+E+K E L +++++ ++ L +K + +
Sbjct: 103 ELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFK 162
Query: 269 ARSGKALESEIQRYKDKLTD---LEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIE 325
+ K L+S I L+ K+ + + + ++ D IE
Sbjct: 163 EKLLKELKSVILNASSLLSLEELKAKIKTLFSSNKPELALLTLSVIDFDE--------IE 214
Query: 326 ENTNLSLLSKSNQCVDNQS-VSSVDLNDLASPGSG---------------DNSLSEQLTS 369
+ L + V ++++ +D G +L +
Sbjct: 215 QAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGDTCPFCQQTITEERKAELEA 274
Query: 370 ----SAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETK 425
Q +LE + S IE E E IL+ EKE + L VE+L+
Sbjct: 275 HFDEEYQELIEQLEELIDKYESHIEKA-----LEELESILDTEKENSEFKLDVEELKALL 329
Query: 426 RRLSAQ----CTEYESK----FTKLETE-----IRKINESYQNLELQIQVRNDELDNMNR 472
L + E K T +E E I IN+ + I+ N+++DN+ +
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389
Query: 473 EKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKL 532
EK K + K+L L+ + + E+I+ Y+ + EK I ++ ++ + L
Sbjct: 390 EKNKAK---KKLWLH-LVAE----LKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKAL 441
Query: 533 TNKLESMEKEHVSLTKQIEDQENELKKY 560
+++ +EK+ ++ ++ LK Y
Sbjct: 442 EKEIKELEKQLTNIEPTADEINKLLKAY 469
Score = 45.8 bits (109), Expect = 1e-04
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 22/184 (11%)
Query: 402 ERILELEKE-KKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINES---YQNLE 457
ER ELE ++ +E LEE + + + + + ++ +E + L+
Sbjct: 267 ERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELK 326
Query: 458 LQIQVRNDELDNMNREKQKLEWKNKELELNME----------INKQLSNNTEEINEYKTK 507
++ + L+ QKLE K K+ ++E IN + E I E+ K
Sbjct: 327 ALLEALEEILEKN---LQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEK 383
Query: 508 LANCEKEIKKCKEALESK-----AESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYND 562
+ N +KE K K+ L E +D + + +EK SL K+I+ E E+K
Sbjct: 384 IDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEK 443
Query: 563 LKRE 566
+E
Sbjct: 444 EIKE 447
Score = 43.5 bits (103), Expect = 5e-04
Identities = 70/395 (17%), Positives = 147/395 (37%), Gaps = 64/395 (16%)
Query: 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELD 571
E +I++ K+ L+ E +++L ++E K+ E+ E K+ D +
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIE----------KKEEELEKAKNKFLDKAWK----- 138
Query: 572 SKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNA 631
++ K S L L K + L +L ++ + LE++ + + L +
Sbjct: 139 ---KLAKKYDSNLSEALKGLNYKKNFKEKLLKEL-KSVILNASSLLSLEELKAKIKTLFS 194
Query: 632 V-KKKLGVEHFNDESSLNNAKLEVDLK----TSQSQISSLTSQHTALQLANSQLILANHN 686
K +L + + + E+ K +S IS L + L
Sbjct: 195 SNKPELALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEG 254
Query: 687 E---LLQDQMTM---TKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVS 740
+ Q +T +L + EY+ ++++++ L +
Sbjct: 255 DTCPFCQQTITEERKAELEAHFDEEYQELIEQLEELIDKY-----------------ESH 297
Query: 741 YESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEK 800
E E+E + S + + +LK L EK + L+E K
Sbjct: 298 IEKALEELESILDTEKENSEFKLDVEELKALLEALEEILEKNL---QKLEE--------K 346
Query: 801 RK---LTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELL 857
K ++ L + + + +D I A++ + ++ N+ D+ +K L + L+
Sbjct: 347 LKDPSTSIELESITDLIESINDIIDAINELIREH-NEKIDNLKKEKNKAKKKLWLH--LV 403
Query: 858 THSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKI 892
ED D Y +E+K +N+L ++ ++LE +I
Sbjct: 404 AELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEI 438
Score = 36.9 bits (86), Expect = 0.065
Identities = 78/424 (18%), Positives = 157/424 (37%), Gaps = 72/424 (16%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ 493
E E++ +L+ E++K+ E + LE +I+ + +EL+ + WK K
Sbjct: 92 EIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKL-------AKKY 144
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ 553
SN +E + K EK +K+ K + + + L LE ++ + +L
Sbjct: 145 DSNLSEALKGLNYKKNFKEKLLKELKSVILNASSLLS-----LEELKAKIKTL---FSSN 196
Query: 554 ENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQT 613
+ EL + DE++ + + +D+ +L + K GL
Sbjct: 197 KPELALLTLSVIDFDEIEQAEIL--EKSIIGSSDVPISELINNLGNSDWVKEGL------ 248
Query: 614 DAENILEKILSSP----EILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQ 669
E+ + P I K +L HF++E +LE + +S I +
Sbjct: 249 ---EYHEEGDTCPFCQQTITEERKAELE-AHFDEEYQELIEQLEELIDKYESHIEKALEE 304
Query: 670 ----------HTALQLANSQLILANHNELLQDQMTMTKLHEQL---------NMEYESVV 710
++ +L +L L + + K ++L ++E ES+
Sbjct: 305 LESILDTEKENSEFKLDVEEL----KALLEALEEILEKNLQKLEEKLKDPSTSIELESIT 360
Query: 711 KEIKVLKSTLRDVKNENKTVKE--QYSQLKVSYESLQAEMEQLKFESHSLSNLR-AEHSK 767
I+ + + N+ ++E + +L+ E + K L ++
Sbjct: 361 DLIESINDI---IDAINELIREHNEKID------NLKKEKNKAK------KKLWLHLVAE 405
Query: 768 LKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ 827
LK+D + L+ +L++E K E + L + ELE +L N + ++
Sbjct: 406 LKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADEINKL 465
Query: 828 LSKY 831
L Y
Sbjct: 466 LKAY 469
Score = 30.0 bits (68), Expect = 7.7
Identities = 46/241 (19%), Positives = 100/241 (41%), Gaps = 40/241 (16%)
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDK 578
E + E L++L +K ES ++ + + I D E K+ ++ K +++EL + + +
Sbjct: 277 DEEYQELIEQLEELIDKYESHIEKALEELESILDTE---KENSEFKLDVEELKALLEALE 333
Query: 579 NTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGV 638
L + EKLK L+ +++E I +
Sbjct: 334 EILEKNLQ-KLEEKLKDPSTSIELE----------SITDLIESINDI------------I 370
Query: 639 EHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKL 698
+ N+ +N K++ +LK +++ A +L L EL +D K
Sbjct: 371 DAINELIREHNEKID-NLKKEKNK-------------AKKKLWLHLVAELKEDIDAYQKE 416
Query: 699 HEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSL 758
+ L S+ KEIK L++ ++ ++ E K +++Q + ++ + + + ++ F + L
Sbjct: 417 KKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQLTNIEPTADEINKLLKAYGFGNFEL 476
Query: 759 S 759
Sbjct: 477 E 477
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 50.1 bits (120), Expect = 6e-06
Identities = 129/667 (19%), Positives = 253/667 (37%), Gaps = 70/667 (10%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHH----KALINRMKAEMLELRAEA 269
+ LA E + + + R +L + L E+RDEL A + ++E LEL E
Sbjct: 277 ERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSE-LEL-LED 334
Query: 270 RSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTN 329
+ G +++I++ + L L +S +EE+ A+ + E+L+Q I+E
Sbjct: 335 QKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQ-L 393
Query: 330 LSLLSKSNQCVDNQS--------VSSVDLNDLASP-GSGDNSLSEQLTSSAQAKALRLEL 380
L K+N+ + DL L S + + LRL
Sbjct: 394 ERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGR 453
Query: 381 ENKRLLSTIESLHENAFYESGERILELEKEK-KKLSLQVEDLEETKRRLSAQCTEYESKF 439
+RL S + E E + LE +E+ ++ VE L+ R+L + E
Sbjct: 454 LKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEAL 513
Query: 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK-------NKELELNMEINK 492
+ E + ++ ++ LELQ+ + L + R + W+ + EL +++
Sbjct: 514 QRAERRLLQLRQALDELELQLSPQAGSLLHFLR-NEAPGWEESIGKVISPELLERTDLDP 572
Query: 493 QLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIED 552
QL ++ Y L ++ E L + L+S + +Q+
Sbjct: 573 QLVEGSDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQL-V 631
Query: 553 QENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQ 612
Q N + + KR E + + + L LQN+ + K DKL LA+ ++
Sbjct: 632 QAN--AELEEQKRAEAEARTALKQARLDLQRLQNEQQSLK----------DKLELAIAER 679
Query: 613 TDAENILEKILSSPEILNAVKKKLGVEHFNDESSLN----NAKLEVDLKTSQSQISSLTS 668
+ L + +++ +E D+ AK +V +Q++ L++
Sbjct: 680 KQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSA 739
Query: 669 QHTALQLAN----SQLILANHNELLQ---DQMTMTKLHEQLNMEYESVVKEIKVLKSTLR 721
A + +L EL D T+ +L ++I+ L++T+
Sbjct: 740 AIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELK-----------RQIEELETTIE 788
Query: 722 DVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEK 781
+ V+E + ++ ++ + E+ + L L + +L+ + L +
Sbjct: 789 RIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQE---LTRLIKD 845
Query: 782 LKADFRALQEEHKGNHMEKRKLTLSLTELE------GELANRDDAISALSVQLSKYQNKL 835
K + L++E K + +L L L EL +A A +S+ ++L
Sbjct: 846 TKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQLAELKEPANANQA-EGSISERLDQL 904
Query: 836 EDDRRKL 842
E+ +RK
Sbjct: 905 EEFKRKR 911
Score = 42.4 bits (100), Expect = 0.002
Identities = 110/596 (18%), Positives = 230/596 (38%), Gaps = 73/596 (12%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
A +L R S +E L + I +L+ + +L +LEE + RL A
Sbjct: 316 SAANAKLAADR--SELELLEDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTG 373
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNM--NREKQKLEWKNKELELNMEIN 491
+++ K E +KI E LE ++ N+ L + +++QK + L ++
Sbjct: 374 KHQDVQRKYERLKQKIKEQ---LERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLR 430
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
+QL E NE + +L +K+ ++ + E L++L E++EK +
Sbjct: 431 QQLEAGKLEFNEEEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEA 490
Query: 552 DQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDD 611
+ E + L++ DE Q + L L+ L +L+ + SL L ++
Sbjct: 491 NVEQLQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSPQAGSL--LHFLRNE 548
Query: 612 QTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHT 671
E + K++ SPE+L ++ ++ E S ++ V L + + + T
Sbjct: 549 APGWEESIGKVI-SPELL----ERTDLDPQLVEGSDSDTLYGVSLDLQRLDVPDYAANET 603
Query: 672 ALQLANSQL---ILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKS---TLRDVKN 725
L+ Q + + + Q + + + + +L + + + LK L+ ++N
Sbjct: 604 ELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQN 663
Query: 726 ENKTVKEQY-------------------SQLKVSYESLQAEMEQLKFESHSLSNLRAEH- 765
E +++K++ +QLK E QA +E LK + L R
Sbjct: 664 EQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKW 723
Query: 766 ----SKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRD--- 818
+L + L A E + +A +E K + + ELA+ D
Sbjct: 724 QVVEGELDNQLAQLSAAIEAARTQAKARLKELK-------------KQYDRELASLDVDP 770
Query: 819 DAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHS-------LEDKDHYHEEE 871
+ + L Q+ + + +E + E + +Y + + E++ + +
Sbjct: 771 NTVKELKRQIEELETTIERIAVRRPE-----VREYRAFMQETWLHRDSLREERPNLAIQL 825
Query: 872 KNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGAN-LVRKVRKAGSEL 926
+ L ++ +L + +KL+ + +K+ + L+R +R +L
Sbjct: 826 RELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQL 881
Score = 35.8 bits (83), Expect = 0.15
Identities = 62/378 (16%), Positives = 128/378 (33%), Gaps = 77/378 (20%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK 273
L L + L+ + ++ E L ++ ELE K + + + R + +
Sbjct: 603 TELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQR-- 660
Query: 274 ALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLL 333
L++E Q KDKL + E +Q + ++ + E+ Q +E
Sbjct: 661 -LQNEQQSLKDKLE-----LAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEA------- 707
Query: 334 SKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLH 393
+ + ++ + L QL + A + K L ++ +
Sbjct: 708 -LKDDFRELRTERLAKWQVVEG------ELDNQLAQLSAAIEAA-RTQAKARLKELKKQY 759
Query: 394 ENAFYESG---ERILELEKEKKKLS------------------------LQVEDLEETKR 426
+ + EL+++ ++L L + L E +
Sbjct: 760 DRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSLREERP 819
Query: 427 RLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELEL 486
L+ Q E ES +L+ E+ ++ + + + +E++ LE
Sbjct: 820 NLAIQLRELESSAEELQQELTRLIKDTKL----------RRKKLEQERKALE-------- 861
Query: 487 NMEINKQLSNNTEEINEYKT---KLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH 543
KQL E + + +LA KE +A S +E LD+L ++
Sbjct: 862 -----KQLDQLDELLRGLRDEMRQLAE-LKEPANANQAEGSISERLDQLEEFKRKRKRLS 915
Query: 544 VSLTKQIEDQENELKKYN 561
L K +E + +K ++
Sbjct: 916 GDLKKFLERFDGVIKDHS 933
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 49.0 bits (118), Expect = 9e-06
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTK 507
KI E+ + + ++ E + + +E LE K + +L E K E+ E + +
Sbjct: 32 KIKEAEEEAKRILEEAKKEAEAIKKEA-LLEAKEEIHKLRNEFEK-------ELRERRNE 83
Query: 508 LANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
L EK + + +E L+ K E L+K +LE EKE +++E +E EL++
Sbjct: 84 LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Score = 34.4 bits (80), Expect = 0.35
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 425 KRRLSAQCTEYESKFTK-LETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKE 483
K+ A+ E E + + LE ++ + L+ + +L R + + E + +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL----RNEFEKELRERR 81
Query: 484 LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH 543
EL ++ K+L E ++ L E+E++K ++ LE K + L+K +LE + +E
Sbjct: 82 NELQ-KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
Query: 544 V 544
+
Sbjct: 141 L 141
Score = 32.8 bits (76), Expect = 1.0
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 799 EKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDD---RRKLMEHVTNLLAQYHE 855
E+ K L + E E A + +A+ ++ K +N+ E + RR ++ + L Q E
Sbjct: 38 EEAKRILEEAKKEAE-AIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE 96
Query: 856 LLTHSLED----KDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSK---K 908
L LE ++ ++EK K L +++E+LEE I E ++L+ S + K
Sbjct: 97 NLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAK 156
Query: 909 KSFGANLVRKVRKAGSELINKSRKSWHEDSLRK 941
+ + + R + LI + + E++ +K
Sbjct: 157 EILLEKVEEEARHEAAVLIKEIEEEAKEEADKK 189
Score = 29.7 bits (68), Expect = 8.4
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 177 EVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEE 236
E + L ++R+ L+ E++ Q L + +L+ + +Q ELE
Sbjct: 95 EENLDRKLELLEKREEELEKKEKELEQKQ--------QELEKKEEELEELIEEQLQELER 146
Query: 237 ---------KSEHLTESRDELEHHKA-LINRMKAEMLELRAEARSGKALESEIQRY 282
K L + +E H A LI ++ E + A+ ++ + L IQR
Sbjct: 147 ISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEA-KEEADKKAKEILAQAIQRC 201
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 48.0 bits (114), Expect = 2e-05
Identities = 101/717 (14%), Positives = 223/717 (31%), Gaps = 11/717 (1%)
Query: 187 AKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRD 246
AK+ Y Q +E + + + + L+ LR ++ E+E + L + +
Sbjct: 207 AKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEE 266
Query: 247 ELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAI 306
L + E E K L E + K +L LE + +V++ + +
Sbjct: 267 ILAQVLKENKEEEKEKKLQEEEL---KLLAKEEEELKSELLKLE--RRKVDDEEKLKESE 321
Query: 307 NEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQ 366
E+ ++ +++ E L L + + + L + + ++
Sbjct: 322 KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKK 381
Query: 367 LTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKR 426
L S + A +L+ E L + E + S + L++EKK+ VE+LEE+
Sbjct: 382 LESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLE 441
Query: 427 RLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELEL 486
+ TE + + K ++ K + E ++ E L K +E
Sbjct: 442 TKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQ 501
Query: 487 NMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSL 546
++ + + L + + + + + +
Sbjct: 502 KESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEV 561
Query: 547 TKQIEDQ--ENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
++ + EL +D L L + + + K T + DK
Sbjct: 562 DERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDK 621
Query: 605 LGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQIS 664
++ + + + S+ + ++K + +E E S A L K ++
Sbjct: 622 RAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQE 681
Query: 665 SLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVK 724
+ L + Q K + E + + K
Sbjct: 682 LQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKL 741
Query: 725 NENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKA 784
E K +++ + K + + E E+ + E K K +
Sbjct: 742 LEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQE 801
Query: 785 DFRA---LQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRK 841
+ + + + +E+ +L + E E + A+ Q + E+ R
Sbjct: 802 EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLA-EEELERL 860
Query: 842 LMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRK 898
E L Q L LE++ E E + +E+ ++ + ++
Sbjct: 861 EEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKE 917
Score = 45.3 bits (107), Expect = 2e-04
Identities = 83/596 (13%), Positives = 192/596 (32%), Gaps = 15/596 (2%)
Query: 218 VELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALES 277
L LK KL ++ E K L + ++LE +A E +A L
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLAL 516
Query: 278 EIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSN 337
++ + + + +A+ + +A + + +L
Sbjct: 517 IKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPL 576
Query: 338 QCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAF 397
+ + L S + + L + L + ++KR L +
Sbjct: 577 PARTFVLLDPLLKLPLKSIAVLEIDPALNL-AQLNKATLEADEDDKRAKVVEGILKDTEL 635
Query: 398 YESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLE 457
+ E E +K E L E + + E L + + + +
Sbjct: 636 TKLLESAKAKESGLRKGVSLEEGLAEKSELKA---SLSELTKELLAEQELQEKAESELAK 692
Query: 458 LQIQVRNDELDNMNREKQKLEWKNKELE----LNMEINKQLSNNTEEINEYKTKLANCEK 513
+I R +E+ ++ K E K +LE L ++ + EE+ + K+ E+
Sbjct: 693 NEILRRQEEIKKK-EQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEE 751
Query: 514 EIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQ-IEDQENELKKYNDLKREMDELDS 572
E +K + E + E +L+ K + + +E K +E+++ E K + + E +
Sbjct: 752 EEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811
Query: 573 KYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAV 632
K + + L + + + + +L+ ++ E + +
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 871
Query: 633 KKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQ 692
+ L E ++ + + + + + + + SQ L + + ++
Sbjct: 872 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLE---EKENEIEERIAEEA 928
Query: 693 MTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME--Q 750
+ + K + E + + + + NK + +L AE E +
Sbjct: 929 IILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKE 988
Query: 751 LKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLS 806
++ L R E K + I+ ++ K ++G + L L
Sbjct: 989 ERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSINRGLNKVFFYLELG 1044
Score = 41.9 bits (98), Expect = 0.002
Identities = 114/731 (15%), Positives = 233/731 (31%), Gaps = 44/731 (6%)
Query: 221 ADLKSKLRKQRLELEEKSEHLTE-SRDELEHHKALINRMKAEMLELRAEARSGKA-LESE 278
+ K K +++ +L E++E+L E D E + + L K LE E
Sbjct: 166 SREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 225
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQ 338
Y D L E ++EL +D + E + + E++ + + K Q
Sbjct: 226 NLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQ 285
Query: 339 CVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFY 398
+ L+++ + ES E
Sbjct: 286 EEE------------------LKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKL 327
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
E EL+KEK+++ ++L+E + + A+ E E E + E +L
Sbjct: 328 EK-----ELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKL 382
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKE---- 514
+ + + E + + KE +L +E+++Q + +E + + K+ +E
Sbjct: 383 ESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLET 442
Query: 515 ----IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDEL 570
+ + KE LE +A L K +L+ E ++ EL E +
Sbjct: 443 KQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQK 502
Query: 571 DSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSL--------DKLGLAMDDQTDAENILEKI 622
+SK + L L D V ++ + + + E
Sbjct: 503 ESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVD 562
Query: 623 LSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLIL 682
+ + L F L L+ +L + A A+
Sbjct: 563 ERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKR 622
Query: 683 ANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYE 742
A E + +TKL E + + K + + + + + + L
Sbjct: 623 AKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQEL 682
Query: 743 SLQAEMEQLK-FESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKR 801
+AE E K ++ + ++K++ + L E+L AD ++ ++
Sbjct: 683 QEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLL 742
Query: 802 KLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSL 861
+ + E E E + + K + + E + + +L +
Sbjct: 743 EQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLK--AQ 800
Query: 862 EDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRK 921
E++ EEE +L + + EEKI E + + ++K R
Sbjct: 801 EEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 860
Query: 922 AGSELINKSRK 932
+ +
Sbjct: 861 EEEITKEELLQ 871
Score = 36.5 bits (84), Expect = 0.086
Identities = 96/707 (13%), Positives = 201/707 (28%), Gaps = 34/707 (4%)
Query: 199 LVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRM 258
EE++ + E + LA E +LKS+L K + E L ES EL+ + + +
Sbjct: 275 NKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKE 334
Query: 259 KAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAE 318
K E+ EL E E EI+R ++ + + K + + + + + A ++ +
Sbjct: 335 KEEIEELEKEL-----KELEIKREAEEEEEEQLEKLQEKLEQLEEELL---AKKKLESER 386
Query: 319 KLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRL 378
+ L L ++ + S DL E+ + L
Sbjct: 387 LSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLL--------KEEKKEELKIVEELEE 438
Query: 379 ELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK 438
LE K+ T E + ++L+ + E KK +++ + K + K
Sbjct: 439 SLETKQGKLTEEKEELE---KQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQK 495
Query: 439 FTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNT 498
+ + K E L I+ + + +
Sbjct: 496 LEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVS 555
Query: 499 EEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
+E + + A E + + L+
Sbjct: 556 AVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLE 615
Query: 559 KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHL------KNSLDKLGLAMDDQ 612
D KR + L + K L K+ L + +
Sbjct: 616 ADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKE 675
Query: 613 TDAENILEKILSSPEILNAV-----KKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLT 667
AE L++ S N + + K + +E + E L +
Sbjct: 676 LLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKI 735
Query: 668 SQHTALQLANSQLILANHNELLQDQMT--MTKLHEQLNMEYESVVKEIKVLKSTLRDVKN 725
++ L + + + K L + + +E K + + K
Sbjct: 736 NEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKT-EKLKVEEEKE 794
Query: 726 ENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKAD 785
E +E+ + +AE+ + + E + + + A+
Sbjct: 795 EKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 854
Query: 786 FRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEH 845
+ E + E + L E E +D+ S + + + E+ ++ +
Sbjct: 855 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLE 914
Query: 846 VTNLLAQYHELLT-HSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEK 891
+ L + EE ++ EE+
Sbjct: 915 EKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEE 961
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 46.1 bits (109), Expect = 9e-05
Identities = 81/432 (18%), Positives = 157/432 (36%), Gaps = 46/432 (10%)
Query: 184 KALAKERDRYLQ-TWRLVEEKRNPSIGNSE---CQHLAVELADLKSKLRKQRLELEEKSE 239
+AL KE + L T + E + + +++ + L Q ELE +
Sbjct: 199 QALPKEENHTLSVTDKEKSEASSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEK 258
Query: 240 HLTESRDE-LEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEE 298
+HH IN ++ K E
Sbjct: 259 GKDHHHSHNHQHHSIGINNHHSKHA-------DSKLQTIE-------------VIENHSN 298
Query: 299 LRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGS 358
+ + + + E +N+ + + SN+ N S S + + P S
Sbjct: 299 KSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSS 358
Query: 359 G--DNSLSEQLTSSAQAKALRLELENKRLLS--TIESLHENAFYESGERILELEKEKKKL 414
DN ++ S + + A + + + + T+E+ + I LE++ KKL
Sbjct: 359 SVSDNESKQKRASKSSSGARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKL 418
Query: 415 SLQVEDLEETKRRLSAQCTEYESKFTKLETEI---RKINESYQN-LELQIQVRNDELDNM 470
+++ + + L Q + S L++++ +K N+ Q L + + + +M
Sbjct: 419 QAELQQARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSM 478
Query: 471 NREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLD 530
+++L+ E + + KQL+ E K K E + +A S+ E +
Sbjct: 479 QSMEKRLK---SEADSRVNAEKQLAE------EKKRKKEEEETAARAAAQAAASREECAE 529
Query: 531 KLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVN 590
L + +E E L ++ +E E + L++E EL KYQ + VL + L
Sbjct: 530 SLKQAKQDLEMEIKKLEHDLKLKEEECR---MLEKEAQELR-KYQESEKETEVLMSALQA 585
Query: 591 EKLKTTHLKNSL 602
+ K L+NSL
Sbjct: 586 MQDKNLMLENSL 597
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 43.1 bits (102), Expect = 2e-04
Identities = 29/104 (27%), Positives = 55/104 (52%)
Query: 689 LQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEM 748
L D + + +L E + +E+ L+ L +++ EN+ +K++ S L+ E LQ E+
Sbjct: 58 LSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL 117
Query: 749 EQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEE 792
++K S + L E+ +L+++ L NE L+A+ LQE
Sbjct: 118 ARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQEN 161
Score = 38.8 bits (91), Expect = 0.006
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 657 KTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKE---I 713
+++ ++ L + LQ ++L EL Q+ + + L E E + KE I
Sbjct: 62 PSARERLPELQQELAELQEELAELQ-EQLAELQQENQELKQELSTLEAELERLQKELARI 120
Query: 714 KVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLK 752
K L + ++ EN+ ++E+ ++LK E+L+AE E+L+
Sbjct: 121 KQLSANAIELDEENRELREELAELKQENEALEAENERLQ 159
Score = 36.9 bits (86), Expect = 0.024
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEE 500
+L+ E+ ++ E L+ Q+ E + +E LE + + L+ + KQLS N E
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Query: 501 INEYKTKLANCEKEIKKCKEALESKAESLDK 531
++E +L E+K+ EALE++ E L +
Sbjct: 130 LDEENRELREELAELKQENEALEAENERLQE 160
Score = 35.0 bits (81), Expect = 0.11
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 465 DELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALES 524
+ L + +E +L+ + EL+ +QL+ +E E K +L+ E E E L+
Sbjct: 66 ERLPELQQELAELQEELAELQ------EQLAELQQENQELKQELSTLEAE----LERLQK 115
Query: 525 KAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVD 577
+ + +L+ +++E+ L +++ + + E L+ E + L Q
Sbjct: 116 ELARIKQLSANAIELDEENRELREELAELKQEN---EALEAENERLQENEQRR 165
Score = 33.8 bits (78), Expect = 0.21
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 245 RDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNR 304
R+ L + + ++ E+ EL+ + L+ E Q K +L+ LE R+++ +
Sbjct: 65 RERLPELQQELAELQEELAELQEQL---AELQQENQELKQELSTLEAELERLQKELARIK 121
Query: 305 AINEIALERDANAEKLQQLIEE-NTNLSLLSKSNQ 338
++ A+E D +L++ + E L N+
Sbjct: 122 QLSANAIELDEENRELREELAELKQENEALEAENE 156
Score = 32.7 bits (75), Expect = 0.53
Identities = 20/92 (21%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETE---IRKINESYQNLELQ 459
+ EL++E +L Q+ +L++ + L + + E++ +L+ E I++++ + L+ +
Sbjct: 74 ELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEE 133
Query: 460 IQVRNDELDNMNREKQKLEWKNKELELNMEIN 491
+ +EL + +E + LE +N+ L+ N +
Sbjct: 134 NRELREELAELKQENEALEAENERLQENEQRR 165
Score = 31.9 bits (73), Expect = 1.0
Identities = 19/100 (19%), Positives = 48/100 (48%)
Query: 505 KTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLK 564
+ +L ++E+ + +E L E L +L + + +++E +L ++E + EL + L
Sbjct: 65 RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124
Query: 565 REMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
ELD + + + L+ L+ + + + L+ + +
Sbjct: 125 ANAIELDEENRELREELAELKQENEALEAENERLQENEQR 164
Score = 30.4 bits (69), Expect = 3.3
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 371 AQAKALRLELENKRLLSTIESLH-ENAFYESGERILELEKEK-KKLSLQVEDLEETKRRL 428
Q + L+ + L + L E + E+ L+ E + K+LS +L+E R L
Sbjct: 78 LQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENREL 137
Query: 429 SAQCTEYESKFTKLETEIRKINESYQN 455
+ E + + LE E ++ E+ Q
Sbjct: 138 REELAELKQENEALEAENERLQENEQR 164
Score = 28.8 bits (65), Expect = 9.3
Identities = 13/74 (17%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 358 SGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQ 417
+ +Q + + LE E +RL + + + + +EL++E ++L +
Sbjct: 86 QEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS-----ANAIELDEENRELREE 140
Query: 418 VEDLEETKRRLSAQ 431
+ +L++ L A+
Sbjct: 141 LAELKQENEALEAE 154
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 44.5 bits (106), Expect = 2e-04
Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 52/232 (22%)
Query: 361 NSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVED 420
L E+L++ K L + L + S + R + + K L ++D
Sbjct: 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLP---KLNPLREEKKKVSVKSLEELIKD 90
Query: 421 LEETKRRLSAQCTEYESKFTKLETEIRKIN------ESYQNLELQIQ------------- 461
+EE ++ + E E + ++LE EI+++ E + N +L +
Sbjct: 91 VEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVG 150
Query: 462 -VRNDELDNMNRE-----------------------KQKLEWKNKELELNMEINKQLSNN 497
V D+L+ + E K+ + +EL+ +L
Sbjct: 151 TVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEE 210
Query: 498 ---TEEINEYKTKLANCEKEIKKCKEALESKAESLDKL---TNKLESMEKEH 543
+E I E K +L EKE + E L+ A+ + + +E E
Sbjct: 211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
Score = 38.4 bits (90), Expect = 0.017
Identities = 35/196 (17%), Positives = 77/196 (39%), Gaps = 36/196 (18%)
Query: 697 KLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESH 756
+L + + E E + KEIK L+ + +++NE K ++++ +L+ + + ++ L +
Sbjct: 86 ELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEP-WGNFDLDLSLLLGFKY 144
Query: 757 ------SLSNLRAEHSKLKDDFRILFTANEK----------------------LKADFRA 788
++ + E KL+ D + + K F
Sbjct: 145 VSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFER 204
Query: 789 LQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTN 848
L+ E +G E + E++ EL + +L +L + K ++ L E++
Sbjct: 205 LELEEEGTPSELIR------EIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEI 258
Query: 849 LLAQYHELLTHSLEDK 864
L + E L+ L+
Sbjct: 259 ELERA-EALSKFLKTD 273
Score = 30.3 bits (69), Expect = 6.9
Identities = 48/262 (18%), Positives = 95/262 (36%), Gaps = 48/262 (18%)
Query: 201 EEKRNPSIGNSECQHL-AVELADLK--------SKLRKQRLELEEKSEHLTESRDELEHH 251
+ ++ + L V + DLK KLR +L E + L +L
Sbjct: 15 KSYKDEVL--EALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPL 72
Query: 252 KALINRMK-------AEMLELRAE--ARSGKALESEIQRYKDKLTDLEYYKSRVEELR-- 300
+ ++ + +E E + K LE EI ++++ +LE R+E
Sbjct: 73 REEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNF 132
Query: 301 -------QDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDL 353
+ ++ + + +L + N+ +S V V L +L
Sbjct: 133 DLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDK---GYVYVVVVVLKEL 189
Query: 354 ASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKK 413
+ + + E+L + RLELE + S + + E E + E+EKE++
Sbjct: 190 S------DEVEEEL---KKLGFERLELEEEGTPSEL--IREIK-----EELEEIEKERES 233
Query: 414 LSLQVEDLEETKRRLSAQCTEY 435
L ++++L + EY
Sbjct: 234 LLEELKELAKKYLEELLALYEY 255
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 44.5 bits (105), Expect = 3e-04
Identities = 98/643 (15%), Positives = 238/643 (37%), Gaps = 80/643 (12%)
Query: 261 EMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKL 320
E+LE+ + R+ L+ I + ++++++Y + E+L+ N + I + + +
Sbjct: 157 EILEINSLERNYDKLKDVIDMLRAEISNIDYLE---EKLKSSNLELENIKKQIADDEKSH 213
Query: 321 QQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLEL 380
++E LS + N +D+ + LN+L+S N ++ ++ ++ LE
Sbjct: 214 SITLKEIERLS--IEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEK 271
Query: 381 ENKRLLSTIESLH----ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYE 436
N +E H + Y++ I + K K +E+ ++ + A+ +Y
Sbjct: 272 NNY--YKELEERHMKIINDPVYKNRNYINDYFKYKN----DIENKKQILSNIDAEINKYH 325
Query: 437 SKFTKLE------TEIRKINESYQNLELQIQ------------VRNDELDNMNREKQKLE 478
+ KL + K Y +L QI +++ E E+
Sbjct: 326 AIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKN 385
Query: 479 WKNKELELNM----------EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAES 528
+ ++ I K+L+ ++ + +K+++ + I+ AL +
Sbjct: 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIR----ALRENLDE 441
Query: 529 LDKLTNKLESMEKEHVSLTKQIEDQENELKKY------------NDLKREMDELDSKYQV 576
L + L V T E++ N + + +++ E+ ++D K
Sbjct: 442 LSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVD 501
Query: 577 DKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKL 636
K L+++ +N+ N +K+ A D D + + ++ + +K +
Sbjct: 502 LKKRKEYLESEEINK------SINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRY 555
Query: 637 GVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMT 696
D S + L S I + S+ + QL N+L +
Sbjct: 556 KSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEI---KKQL-----NDLESRLQEIE 607
Query: 697 KLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESH 756
+ ++EI+ + L + NE + K +L+ ++ + ++ ++
Sbjct: 608 IGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIP 667
Query: 757 SLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN 816
L + + + ++D+ + A + KA+ L+ + +L+ + ++ L +
Sbjct: 668 DLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES 727
Query: 817 RDDAISALSVQLSKYQNKLEDD------RRKLMEHVTNLLAQY 853
A+ L + + + R+ + +T+L +Y
Sbjct: 728 MKKIKKAIG-DLKRLREAFDKSGVPAMIRKSASQAMTSLTRKY 769
Score = 40.7 bits (95), Expect = 0.004
Identities = 94/571 (16%), Positives = 211/571 (36%), Gaps = 65/571 (11%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269
N E +++ ++AD + E+E S + D+ + K+ +N + +
Sbjct: 196 NLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK---- 251
Query: 270 RSGKALESEIQRYKDKLTDLEYYKSRVEELRQD-NRAINEIALERDANAEKLQQLIEENT 328
ESEI+ + L+ + +EL + + IN+ N + +
Sbjct: 252 ---NRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVY---KNRNYINDYFKYKN 305
Query: 329 NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL-LS 387
++ + +D + + S D + + S +L N+ L L
Sbjct: 306 DIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYD------DLNNQILELE 359
Query: 388 TIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIR 447
E + + ++E+ K + + E + + + ++ +++
Sbjct: 360 GYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQ 419
Query: 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKN------------KELELNMEINKQLS 495
I+ +L +I+ + LD ++R + L ++ K + N++ S
Sbjct: 420 DISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKS 479
Query: 496 NNTEEINEYK---TKLANCEKEIKKCKEALES-KAESLDKLTNKLESMEKEHVSLTKQIE 551
E+I E + + ++KK KE LES + NK+ES + + I+
Sbjct: 480 RLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARAD----LEDIK 535
Query: 552 DQENELK----KYNDLKRE-----MDELDSKYQVDKNTLSVLQN-DLVNEKLKTTHLKNS 601
+ NELK KY ++K +++LDSK N L+V+ D+ + ++ +K
Sbjct: 536 IKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQ 595
Query: 602 LDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQS 661
L+ D E+ L++I + K E N+ ++LNN E+
Sbjct: 596 LN----------DLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILI 645
Query: 662 QISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLR 721
+ + Q+A + ++ D +T + + K + K+
Sbjct: 646 EKLRGKIDNYKKQIAEI-------DSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRA 698
Query: 722 DVKNENKTVKEQYSQLKVSYESLQAEMEQLK 752
+++ + ++ + ++L + +E +K
Sbjct: 699 RLESTIEILRTRINELSDRINDINETLESMK 729
Score = 33.3 bits (76), Expect = 0.65
Identities = 65/404 (16%), Positives = 153/404 (37%), Gaps = 33/404 (8%)
Query: 515 IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574
+K + L ++ ++D L KL+S E ++ KQI D E K ++ +E++ L +Y
Sbjct: 171 LKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDE---KSHSITLKEIERLSIEY 227
Query: 575 QVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNA--- 631
+ + L++ L ++ A D + E
Sbjct: 228 NNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIN 287
Query: 632 ----VKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNE 687
+ ++F ++ + N K L ++I+ + L ++ ++N+
Sbjct: 288 DPVYKNRNYINDYFKYKNDIENKKQI--LSNIDAEINKYHAIIKKL-----SVLQKDYND 340
Query: 688 LLQDQMTMTKLHEQL------NMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSY 741
++ + L+ Q+ M+Y S +K I+ LK + + + + S++
Sbjct: 341 YIKKKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQ 400
Query: 742 ESLQAEMEQLKFE-SHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHK----GN 796
E +++ E + L ++ ++ S L R L ++L + L + G
Sbjct: 401 EIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGT 460
Query: 797 HMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHEL 856
+ + K + + + ++ I + +++ K+ D +K E++ +
Sbjct: 461 TLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIV-DLKKRKEYLESEEINKSIN 519
Query: 857 LTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLD 900
+ +E + ++ K+N L + +K EE I Y+ L
Sbjct: 520 EYNKIESARA---DLEDIKIKINELKDKHDKYEE-IKNRYKSLK 559
Score = 33.0 bits (75), Expect = 1.0
Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 14/224 (6%)
Query: 703 NMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLR 762
N+E E++ K+I + + E + + +Y+ Y +L++ + +L +
Sbjct: 196 NLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYE 255
Query: 763 AEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAIS 822
+E + D + N K + + R + + ++ N+ +S
Sbjct: 256 SEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILS 315
Query: 823 ALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHE------EEKNFSD 876
+ +++KY +KL L Y++ + D ++ E +++
Sbjct: 316 NIDAEINKY----HAIIKKLSV----LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNS 367
Query: 877 KLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVR 920
L ++ K+K+EE R S K + + ++K
Sbjct: 368 YLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKEL 411
Score = 31.8 bits (72), Expect = 2.0
Identities = 62/379 (16%), Positives = 146/379 (38%), Gaps = 35/379 (9%)
Query: 556 ELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDA 615
+ KK D E++ L+ Y K+ + +L+ ++ N LK+S +L D
Sbjct: 150 QRKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADD 209
Query: 616 ENILEKILSSPEILNAVKKKLGVEHFNDESSLNN--------AKLEVDLKTSQSQISSLT 667
E L E L+ ++ N +S+LN + E ++KT++S +S
Sbjct: 210 EKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMEL 269
Query: 668 SQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNEN 727
++ + + H +++ D + + +N +Y +I+ K L ++ E
Sbjct: 270 EKNNYYKELEER-----HMKIINDPVYKNR--NYIN-DYFKYKNDIENKKQILSNIDAEI 321
Query: 728 KTVKEQYSQLKV------SYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEK 781
+L V Y ++ + L + + L + + + +K
Sbjct: 322 NKYHAIIKKLSVLQKDYNDYIKKKSRYDDLN---NQILELEGYEMDYNSYLKSIESLKKK 378
Query: 782 LKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRK 841
++ + ++ + + ++ EL + + +S ++S ++ R
Sbjct: 379 IEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438
Query: 842 LMEHVTNL-LAQYHELL----THSLEDK-----DHYHEEEKNFSDKLNNLHRQKEKLEEK 891
L E N+ + + T E+K +HY+E++ +K+ + + + ++EK
Sbjct: 439 LDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEK 498
Query: 892 IMEHYRKLDSCSSSSKKKS 910
I++ ++ + S KS
Sbjct: 499 IVDLKKRKEYLESEEINKS 517
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 43.0 bits (102), Expect = 8e-04
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 480 KNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
K LE E++K + E+ E + +L E+ + + +E L+ K ESLDK LE
Sbjct: 50 KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKK 109
Query: 540 EKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
EKE + K ++++E EL++ + + +EL+
Sbjct: 110 EKELSNKEKNLDEKEEELEEL--IAEQREELER 140
Score = 34.1 bits (79), Expect = 0.34
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 10/124 (8%)
Query: 830 KYQNKLEDD---RRKLMEHVTNLLAQYHELLTH---SLEDKDHYHEE-EKNFSDKLNNLH 882
K + +LE + RR ++ + L Q E L SL+ K+ E+ EK S+K NL
Sbjct: 62 KLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLD 121
Query: 883 RQKEKLEEKIMEHYRKLDSCSSSSK---KKSFGANLVRKVRKAGSELINKSRKSWHEDSL 939
++E+LEE I E +L+ S ++ K+ + + R ++LI + + E++
Sbjct: 122 EKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEAD 181
Query: 940 RKDR 943
+K +
Sbjct: 182 KKAK 185
Score = 33.0 bits (76), Expect = 0.97
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
EL L+ +L ++ L+ K E L + + LE + ++ + + E E LE
Sbjct: 77 ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEE------LEEL 130
Query: 279 IQRYKDKL 286
I +++L
Sbjct: 131 IAEQREEL 138
Score = 29.5 bits (67), Expect = 10.0
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 202 EKRNPSIGNSECQHLAVELADLKSKLRKQRLELEE---------KSEHLTESRDELEHHK 252
EK+ + N E ++L + +L+ + +QR ELE K L E +E H
Sbjct: 107 EKKEKELSNKE-KNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEA 165
Query: 253 A-LINRMKAEMLELRAEARSGKALESEIQRY 282
A LI ++ E + A+ ++ + L + IQRY
Sbjct: 166 AKLIKEIEEEA-KEEADKKAKEILATAIQRY 195
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 42.6 bits (101), Expect = 0.001
Identities = 71/369 (19%), Positives = 147/369 (39%), Gaps = 57/369 (15%)
Query: 227 LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLEL------RAEARSGKALESEIQ 280
LR +R EL E+ L+ +L+ +R L + AE R E++
Sbjct: 791 LRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELE 850
Query: 281 RYKDKLTDLE----YYKSRVEELRQDNRAINEIA-----LERDANAEKLQQLIEENTNLS 331
R L D E +S++E+ ++ A+N + L + A++++++ E+ L
Sbjct: 851 R---ALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQ---LD 904
Query: 332 LLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSS-AQAKALRLELENK-RLLSTI 389
++ + V + L + S D EQL QA+ + + + + L+ +
Sbjct: 905 EAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEV 964
Query: 390 ESLHENAFYESGERILELEKE-KKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
+ YE +L + +KL ++E E+ + R Q + +++ +
Sbjct: 965 VQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQY------ 1018
Query: 449 INESYQNLELQIQVRNDELDNMNREKQKL------EWKNKELELNMEINKQLSNNTEEIN 502
N+ +L+ + L + +E Q L + + E++ +LS N N
Sbjct: 1019 -NQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRN 1077
Query: 503 EYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQEN------E 556
+ + +L CE E +D LT KL +E+++ + +Q+ + +
Sbjct: 1078 QLEKQLTFCEAE--------------MDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLR 1123
Query: 557 LKKYNDLKR 565
L K N ++R
Sbjct: 1124 LVKDNGVER 1132
Score = 32.6 bits (75), Expect = 1.5
Identities = 47/265 (17%), Positives = 97/265 (36%), Gaps = 47/265 (17%)
Query: 661 SQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTL 720
+ S Q + QL ++ L+ N LL + E L E + +++ +
Sbjct: 854 ADHESQEQQQRS-QLEQAKEGLSALNRLLPRLNLL--ADETLADRVEEIREQLDEAEEAK 910
Query: 721 RDVKNENKTVK-------------EQYSQLKVSYESLQAEMEQLKFESHSLSNL--RAEH 765
R V+ + EQ+ QLK Y+ Q K ++ +L+ + R H
Sbjct: 911 RFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAH 970
Query: 766 SKLKDDFRILF---TANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAIS 822
+D +L NEKL+ ++ E+ + L + + +LA + ++
Sbjct: 971 FSYEDAAEMLAKNSDLNEKLRQRLEQAEQ-------ERTRAREQLRQAQAQLAQYNQVLA 1023
Query: 823 ALSVQLSKYQNKLEDDRRKLMEHVTNLLAQY---------------HELLTHSLEDKDHY 867
+L S Y K ++L + + +L H L+ + ++
Sbjct: 1024 SLK---SSYDAK-RQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQL 1079
Query: 868 HEEEKNFSDKLNNLHRQKEKLEEKI 892
++ +++NL ++ KLE
Sbjct: 1080 EKQLTFCEAEMDNLTKKLRKLERDY 1104
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 41.9 bits (99), Expect = 0.002
Identities = 38/222 (17%), Positives = 95/222 (42%), Gaps = 27/222 (12%)
Query: 411 KKKLSLQVEDLEETKRRLSAQCTEYESKFTKL-------ETEIRKINESYQNLELQIQVR 463
++++ +++EE +++ ++K+ +L + EI ++ + NL + I+
Sbjct: 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
Query: 464 NDELDNMNREKQKLEWKNKELELNMEIN------------KQLSNNTEEINEYKTKLANC 511
+ L+ +N K+ K+K + I +Q+S + I + K KL
Sbjct: 254 SAALNKLNTAAAKI--KSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKEL 311
Query: 512 EKEIKKCKEA---LESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568
+ ++K A LE + ++ + KL ++ + + + + ++ K +K ++
Sbjct: 312 QHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAK---KVKAAIE 368
Query: 569 ELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMD 610
EL +++ + L+ LQ++L + L G+ D
Sbjct: 369 ELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTD 410
Score = 40.4 bits (95), Expect = 0.004
Identities = 44/241 (18%), Positives = 90/241 (37%), Gaps = 30/241 (12%)
Query: 442 LETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEI 501
+ +IR++N+ Q L+++I ++ N+ ++ KN E + EE
Sbjct: 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG--ENIARKQNKYDELVEEA 229
Query: 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLT-------NKLESMEKEHVSLTK------ 548
K ++ E+ +E + +L+KL +K+E +K K
Sbjct: 230 KTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPT 289
Query: 549 ---QIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKL 605
QI + + + K D +E+ K + L + ++ + K LKN +
Sbjct: 290 CTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTN 349
Query: 606 GLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISS 665
+ +++K + A ++L E ++ L AKL+ +L S
Sbjct: 350 ------KQSLITLVDKAKK----VKAAIEELQAEFVDNAEEL--AKLQDELDKIVKTKSE 397
Query: 666 L 666
L
Sbjct: 398 L 398
Score = 36.1 bits (84), Expect = 0.099
Identities = 39/226 (17%), Positives = 89/226 (39%), Gaps = 12/226 (5%)
Query: 383 KRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKL 442
+ + + + EL +E K + ++E+L + L + + KL
Sbjct: 201 NKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKL 260
Query: 443 ETEIRKINESYQNLELQIQVRND---------ELDNMNREKQKLEWKNKELELNMEINKQ 493
T KI + + I++ ++ K++ K KEL+ ++E +
Sbjct: 261 NTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLE---K 317
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ 553
L +E+ E + K++ + K + + +SL L +K + ++ L + D
Sbjct: 318 LDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377
Query: 554 ENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLK 599
EL K D ++ + S+ +K ++ + L + +K + +K
Sbjct: 378 AEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKASIIK 423
Score = 32.3 bits (74), Expect = 1.3
Identities = 37/217 (17%), Positives = 85/217 (39%), Gaps = 46/217 (21%)
Query: 714 KVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFR 773
K+ K +R++ + +T+ + ++ +Q+K + ++ R ++ +
Sbjct: 170 KLNKDKIRELNQQIQTLDMKIDHIQ----------QQIKTYNKNIEEQRKKNGE------ 213
Query: 774 ILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQN 833
+ + + L EE K E +LT L L ++ + A++ L+ +K ++
Sbjct: 214 ----NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269
Query: 834 KLE----------------------DDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEE 871
K+E + + + + L + L HSLE D +E
Sbjct: 270 KIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKE----LQHSLEKLDTAIDEL 325
Query: 872 KNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKK 908
+ D+ N ++ +L+ KI + + L + +KK
Sbjct: 326 EEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKK 362
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 41.5 bits (98), Expect = 0.002
Identities = 36/187 (19%), Positives = 75/187 (40%), Gaps = 14/187 (7%)
Query: 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ 431
+++ LRLE E RL + +S + E + + Q E K L AQ
Sbjct: 87 ESQVLRLEAEVARLRAEADSQ-AAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQ 145
Query: 432 CTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQK--------LEWKNKE 483
++ +LE E+ + Q L Q++V ++EL+ + K+K LE + +
Sbjct: 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERER 205
Query: 484 LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKA-ESLDKLTNKLESMEKE 542
E E+ + + E+ K ++ + E ++ ++ + E L + +L + +
Sbjct: 206 AEAQGELGRLEA----ELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRER 261
Query: 543 HVSLTKQ 549
+
Sbjct: 262 LNKARDR 268
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 41.6 bits (98), Expect = 0.002
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 405 LELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRN 464
L KE+++ + EE +R ++ E I+K+ E+ + LE +
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVY-----------EKRIKKLEETVERLEEENSELK 442
Query: 465 DELDNMNREKQKLEWK----NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
EL+ + RE +KLE + +E+ + ++++ I + +L +K + E
Sbjct: 443 RELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV----E 498
Query: 521 ALESKAESLDKLTNKLESMEKEHVSLTKQ 549
LE K L K+ S + V + ++
Sbjct: 499 ELERKLAELRKMRKLELSGKGTPVKVVEK 527
Score = 40.8 bits (96), Expect = 0.004
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 198 RLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINR 257
V+E+ P + E+ + +++K +E E +E + ELE K I +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 258 MKAEMLELRAEARSGKALESEI---QRYKDKLT-DLEYYKSRVEELRQD 302
+++E+ R E R + EI R ++L +LE K RVEEL +
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503
Score = 35.5 bits (82), Expect = 0.16
Identities = 27/157 (17%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQV-RNDEL-DNMNREKQKLEWKNKELELNMEIN 491
Y+ K K+E ++ ++ ++ V R L + +++ K++ + KE E
Sbjct: 356 AYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEE-- 413
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
EI Y+ ++ E+ +++ +E L++L ++E +E E +++
Sbjct: 414 ------RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467
Query: 552 DQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588
D+ + ++ R ++ L+ + + K + L+ L
Sbjct: 468 DKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 40.6 bits (95), Expect = 0.003
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 360 DNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVE 419
+ L Q + +AL EL+ L E L + + ELEKE L ++
Sbjct: 52 LSKLESQNVEISNYEALDSELDE--LKKEEERLLD--------ELEELEKEDDDLDGELV 101
Query: 420 DLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNM 470
+L+E K +L + +Y ++ + ++ ++ Q+LELQ + ++LD +
Sbjct: 102 ELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSLNQLDKL 152
Score = 32.9 bits (75), Expect = 0.84
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 713 IKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDF 772
++ L S LRD + E T K+ S+L ES E+ + L L+ E +L D+
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKL----ESQNVEISNYEALDSELDELKKEEERLLDEL 86
Query: 773 RILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQ 832
L ++ L + LQEE + E+ + + +D + +L +Q
Sbjct: 87 EELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDNLQSLELQYEYSL 146
Query: 833 NKLEDDRR 840
N+L+ R+
Sbjct: 147 NQLDKLRK 154
Score = 31.4 bits (71), Expect = 2.6
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 407 LEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDE 466
L+ E +L + E L + + E E + L+ E+ ++ E + LE + E
Sbjct: 68 LDSELDELKKEEERLLD-------ELEELEKEDDDLDGELVELQEEKEQLENEELQYLRE 120
Query: 467 LDNMNREKQKLEWKNKELELNMEINKQLSNNTEEIN 502
+ +R +LE + LEL E + + + N
Sbjct: 121 YNLFDRNNLQLEDNLQSLELQYEYSLNQLDKLRKTN 156
Score = 31.0 bits (70), Expect = 2.8
Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 456 LELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEI 515
L+ +++ E D + KLE +N E+ ++ +L +E +L EKE
Sbjct: 34 LDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKED 93
Query: 516 KKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ 575
L E ++L N ++ L++YN R +L+ Q
Sbjct: 94 DDLDGELVELQEEKEQLEN-----------------EELQYLREYNLFDRNNLQLEDNLQ 136
Query: 576 VDKNTLSVLQNDLVNEKLKTTHLKN 600
+ N L +KL+ T++ N
Sbjct: 137 SLELQYEYSLNQL--DKLRKTNIFN 159
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 41.2 bits (98), Expect = 0.003
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 22/136 (16%)
Query: 411 KKKLSLQVEDLEETKRRLSAQCTEYESKFTKLET-EIRKINESYQNLELQIQVRNDE--- 466
KKL L ++ + R Y + +LE+ EI +E V E
Sbjct: 742 SKKLPLLLKGADAEDRARLEANEAYIKRLARLESLEILADDEEAPEGAASAVVGGAELFL 801
Query: 467 ----LDNMNREKQKLEWKNKELE-LNMEI---NKQLSN-------NTEEINEYKTKLANC 511
L ++ E +LE KEL L EI K+LSN E + + + KLA
Sbjct: 802 PLEGLIDVEAELARLE---KELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEY 858
Query: 512 EKEIKKCKEALESKAE 527
E+++ K KE L
Sbjct: 859 EEKLAKLKERLARLKA 874
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 40.4 bits (94), Expect = 0.004
Identities = 19/164 (11%), Positives = 64/164 (39%), Gaps = 3/164 (1%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
E E++ +++ + + + + K + E+ ++ + Q+L+ +++ +
Sbjct: 99 AAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAE 158
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK 525
+ + + Q L+ K+L+ + QL + ++ ++ + + A +++
Sbjct: 159 QRRQLEAQAQSLQASQKQLQASAT---QLKSQVLDLKLRSAQIEQEAQNLATRANAAQAR 215
Query: 526 AESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDE 569
E L + + + QI + ++ + RE +
Sbjct: 216 TEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERER 259
Score = 37.7 bits (87), Expect = 0.030
Identities = 27/151 (17%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 690 QDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME 749
Q++ + + +E+ L +D++ KT+ EQ QL+ +SLQA +
Sbjct: 116 QEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQK 175
Query: 750 QLKFESHSLS----NLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTL 805
QL+ + L +L+ ++++ + + L T + A EE ++
Sbjct: 176 QLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQ----ARTEELARRAAAAQQTAQ 231
Query: 806 SLTELEGELANRDDAISALSVQLSKYQNKLE 836
++ + + +++ + I+A + Q+ + + +L+
Sbjct: 232 AIQQRDAQISQKAQQIAARAEQIRERERQLQ 262
Score = 35.8 bits (82), Expect = 0.12
Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 8/210 (3%)
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
+ L + + Q++D+ R L + + + ETE Q + +
Sbjct: 62 LFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV 121
Query: 464 NDELDNMNREK----QKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCK 519
EL + Q+L K+ + K L+ ++ L +K+++
Sbjct: 122 RQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASA 181
Query: 520 EALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKY----NDLKREMDELDSKYQ 575
L+S+ L + ++E + + + + EL + + + + D++
Sbjct: 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQIS 241
Query: 576 VDKNTLSVLQNDLVNEKLKTTHLKNSLDKL 605
++ + + + L+ + +L
Sbjct: 242 QKAQQIAARAEQIRERERQLQRLETAQARL 271
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 40.0 bits (93), Expect = 0.006
Identities = 69/386 (17%), Positives = 162/386 (41%), Gaps = 21/386 (5%)
Query: 363 LSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLE 422
L + S Q L E + + I +L + + E +E K+S +++ L
Sbjct: 247 LEDNYEPSEQELKLGFEKFVHIINTDIANLKT-----QNDNLYEKIQEAMKISQKIKTLR 301
Query: 423 ETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNK 482
E R L + +YE+ ++ + ++ + L+ +I+++ +E+ + +L + +
Sbjct: 302 EKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361
Query: 483 ELELNME----INKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLES 538
+ ++ E +N++ T E+++ + K +K K + +SL+K + +S
Sbjct: 362 KQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421
Query: 539 MEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNE-KLKTTH 597
+ + QI N+ LK +++L K ++ +L +E + +
Sbjct: 422 LIQNITRSRSQIGHNVNDS----SLKINIEQLFPKGSGINESIKKSILELNDEIQERIKT 477
Query: 598 LKNSLDKLGLAMDDQTDAENILEKILSSPEI-LNAVKKKLGVEHFNDESSLNNAKLEVDL 656
+N L + + N L +IL E+ L+ K + +E L ++E++
Sbjct: 478 EENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEK 537
Query: 657 KTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVL 716
+ +L S+ + L QL+ + +L + ++ + + +++ + V+
Sbjct: 538 LEKELNDLNLLSKTSILDA--EQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKF 595
Query: 717 K----STLRDVKNENKTVKEQYSQLK 738
K S+L D++NE V E+ L+
Sbjct: 596 KINIQSSLEDLENELGKVIEELRNLE 621
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 39.2 bits (91), Expect = 0.009
Identities = 70/342 (20%), Positives = 146/342 (42%), Gaps = 27/342 (7%)
Query: 480 KNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
+N ++ + + +S+ I + +T L + ++ ++ +E + S + ++ + ++
Sbjct: 152 RNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNAL 211
Query: 540 EKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLK 599
+ ++I + E +++ K+E D + Q + L ++ +L ++LK ++
Sbjct: 212 LAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGEL-KQRLKKMTIQ 270
Query: 600 NSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTS 659
D+ +D Q + E + E + + E L + ++K G+ + +SL + + D +
Sbjct: 271 RR-DEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLG-EELASLGSLR---DHTIA 325
Query: 660 QSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKST 719
+ S L S +LQL+ L L + Q + E L E+ I+ L
Sbjct: 326 ELHQSRLESAQMSLQLSQLNL------ALKEGQSQWAQERETLRQSAEADKDRIQKLS-- 377
Query: 720 LRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESH-SLSNLRAEHSKLKDDFRILFTA 778
++ + ++E+ SQ E L+ E+ K + LS R E S+L+ R+L
Sbjct: 378 -AELLKLEEWLQEERSQ----REKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKE 432
Query: 779 NEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDA 820
E+ LQEE + R L L L + E D A
Sbjct: 433 KEQ-------LQEEKQELLDYIRVLELRLDKEADEKWAEDAA 467
Score = 35.4 bits (81), Expect = 0.15
Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 37/307 (12%)
Query: 591 EKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNA 650
++L T ++ D L L + T +N LE E + +KK L +E +
Sbjct: 117 DELVTLEKEDDGDDLLLVVPKATILQNQLE--GCQRERNDLMKKFLALEGDVSDMRSRIE 174
Query: 651 KLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVV 710
+LE L+ S + L QH Q ++S+ + A N LL + E + +
Sbjct: 175 QLETALRHSTEKTEELEEQHKEAQ-SSSESMSAERNALLAQRA-----------ENQQRI 222
Query: 711 KEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKD 770
E++ TL K EN V E ++ E ++ E++Q L + + +
Sbjct: 223 LELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQ------RLKKMTIQRRDEET 276
Query: 771 DFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISAL---SVQ 827
+ L NE+L D R LQE + + ++K L EL + RD I+ L ++
Sbjct: 277 ERIDLQLENEQLHEDLRTLQERLESS---QQKAGLLGEELASLGSLRDHTIAELHQSRLE 333
Query: 828 LSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEK 887
++ +L L E + AQ E L S E D++ L + K
Sbjct: 334 SAQMSLQLSQLNLALKEGQSQW-AQERETLRQSAEAD----------KDRIQKLSAELLK 382
Query: 888 LEEKIME 894
LEE + E
Sbjct: 383 LEEWLQE 389
Score = 30.7 bits (69), Expect = 4.2
Identities = 59/327 (18%), Positives = 128/327 (39%), Gaps = 42/327 (12%)
Query: 420 DLEETKRRLSAQCTEYESKFTKLETEIR-------KINESYQNLELQIQVRNDELDNMNR 472
DL + L ++ S+ +LET +R ++ E ++ + + + E + +
Sbjct: 154 DLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLA 213
Query: 473 EKQKLEWKNKELELNME-INKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK-AESLD 530
++ + + + ELE +++ + ++ N ++ ++I+ E ++ + + L
Sbjct: 214 QRAENQQRILELEQDIQTLTQKKQEN--------DRVLEGTQDIEAELERMKGELKQRLK 265
Query: 531 KLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQN---- 586
K+T + E E + L + E +L+ + + + +L L++
Sbjct: 266 KMTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIA 325
Query: 587 DLVNEKLKTTHLKNSLDKLGLAM-DDQTDAENILEKILSSPE-----ILNAVKKKLGVEH 640
+L +L++ + L +L LA+ + Q+ E + S E I + L +E
Sbjct: 326 ELHQSRLESAQMSLQLSQLNLALKEGQSQWAQERETLRQSAEADKDRIQKLSAELLKLEE 385
Query: 641 FNDESSLNNAKLEVDL-----------KTSQSQISSLTSQHTALQLANSQLILANHNELL 689
+ E KLEV+L ++ ++S L S LQ QL ELL
Sbjct: 386 WLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQLQEEKQ-ELL 444
Query: 690 QDQMTMTKLHEQLNMEYESVVKEIKVL 716
+ L +L+ E + E
Sbjct: 445 D---YIRVLELRLDKEADEKWAEDAAT 468
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 38.5 bits (90), Expect = 0.019
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 480 KNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
+ LE + ++ + +E + +L E+ + + +E L+++AE LD L N+LE
Sbjct: 51 EAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEER 110
Query: 540 EKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEK 592
EK E + EL+K D + + Q K L +L +L EK
Sbjct: 111 EKA----LSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEK 159
Score = 30.4 bits (69), Expect = 5.1
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 362 SLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDL 421
E A+ LR + ++ + ++ +L+ +KL L
Sbjct: 48 EKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQL 107
Query: 422 EETKRRLSAQCTEYESKFTKLETEIRKIN--ESYQNLELQIQVRNDELDNMNREKQKLEW 479
EE ++ LSA+ E E +L+ E+ ++ Q +L +++ + EL EK +
Sbjct: 108 EEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAEL---EEEKAQRVK 164
Query: 480 KNKE 483
K +E
Sbjct: 165 KIEE 168
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 37.3 bits (87), Expect = 0.028
Identities = 28/139 (20%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
E + L+++ K L ++E L K +L + E + +L+ ++ + + +
Sbjct: 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK 210
Query: 462 --VRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCK 519
++ + M + +KLE +EL+ E+ ++ + T + +E T++A EK++++C+
Sbjct: 211 EKLKKLLQEIMIK-VKKLEELEEELQ---ELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266
Query: 520 EALESKAESLDKLTNKLES 538
+ E L + L+S
Sbjct: 267 GFTFKEIEKLKEQLKLLQS 285
Score = 33.1 bits (76), Expect = 0.71
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNN-T 498
L+ + + E Y+ L ++++ N + + + + +EL ++ +L +
Sbjct: 147 EGLDENLEGLKEDYKLLMKELELLNSIKP---KLRDRKDALEEELRQLKQLEDELEDCDP 203
Query: 499 EEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
E++ K KL +EI + LE E L +L +K+E + + L +I + E +L+
Sbjct: 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263
Query: 559 K 559
+
Sbjct: 264 Q 264
Score = 31.1 bits (71), Expect = 2.6
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEK 513
+ LE + ++ L+ + + + L KELEL I +L + + + E +L E
Sbjct: 140 KLLEGLKEGLDENLEGLKEDYKLL---MKELELLNSIKPKLRDRKDALEEELRQLKQLED 196
Query: 514 EIKKC--------KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYND 562
E++ C KE L+ + + KLE +E+E L +IED N+ + N
Sbjct: 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253
Score = 31.1 bits (71), Expect = 2.8
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKAL--- 275
EL K KL+K E+ K + L E +EL+ ++ I + + EL E +
Sbjct: 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
Query: 276 -----ESEIQRYKDKLTDLE 290
EI++ K++L L+
Sbjct: 265 CRGFTFKEIEKLKEQLKLLQ 284
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 37.7 bits (88), Expect = 0.031
Identities = 64/377 (16%), Positives = 141/377 (37%), Gaps = 31/377 (8%)
Query: 483 ELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKE 542
L ++ + +E + +++ E E+K+ E E A+ + L N+LE ++
Sbjct: 186 RLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRS 245
Query: 543 HVSLTKQIEDQENELK-KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNS 601
SL K+ + +L + L+R++ E+++ +L + L + N
Sbjct: 246 LESLEKKFRSEGGDLFEEREQLERQLKEIEAAR----KANRAQLRELAADPLPLLLIPNL 301
Query: 602 LD--KLGLAMDDQTDAENI-----------LEKILSSPEILNAVKKKLGVEHFNDESSLN 648
LD K L ++Q+ + L + L + K++ E
Sbjct: 302 LDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAE-IDKPA 360
Query: 649 NAKLEVDLKTSQSQISSLTSQHTALQ--LANSQLILANHNELLQDQMTMTKLHEQLNMEY 706
E+ + S S+++ L ++ L +++ L L++++
Sbjct: 361 TTDSEIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSE 420
Query: 707 ESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHS 766
E + + ++ L ++ ++E QL E+L+ +E L+ + +
Sbjct: 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQL----ETLKEAIEALRKTLDEKTKQKINAF 476
Query: 767 KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSV 826
+L+ I A + LK +FR E K +E+ +L + + IS L +
Sbjct: 477 ELERAITIADKAKKTLK-EFREKLLERKLQQLEEEITKSFK-----KLMRKHNLISRLKI 530
Query: 827 QLSKYQNKLEDDRRKLM 843
+ L D+ K +
Sbjct: 531 DPETFAVSLYDNNGKHI 547
Score = 37.4 bits (87), Expect = 0.037
Identities = 73/345 (21%), Positives = 136/345 (39%), Gaps = 71/345 (20%)
Query: 221 ADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQ 280
DL + LR+++ KSE + E+E AL +K + + A+ L +E++
Sbjct: 189 GDLTNVLRRRK-----KSELPSSILSEIE---ALEAELKEQSEKYEDLAQEIAHLRNELE 240
Query: 281 RYKDKLTDLE--------YYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSL 332
+ L LE E+L + + I R AN +L++L + L L
Sbjct: 241 EAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEA---ARKANRAQLRELAADPLPLLL 297
Query: 333 LSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL 392
+ L S +A L+ E ++++ T E L
Sbjct: 298 IP-------------------------------NLLDSTKA-QLQKEEQSQQNQLTQEEL 325
Query: 393 HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKF-TKLETEIRKINE 451
E R EL + KL+L E + ++A+ E + T E R
Sbjct: 326 EE--------RDKELLESLPKLALP----AEHVKEIAAELAEIDKPATTDSEIPHRLSGS 373
Query: 452 SYQNLELQIQ-VRNDELD---NMNREKQKLEWKNKELELNMEIN---KQLSNNTEEINEY 504
LE+ IQ V+ + D + +E ++LE + E++ + +Q++ EE+ E
Sbjct: 374 ELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEA 433
Query: 505 KTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQ 549
+ +L E EI++ LE+ E+++ L L+ K+ ++ +
Sbjct: 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFEL 478
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 37.6 bits (87), Expect = 0.037
Identities = 78/390 (20%), Positives = 152/390 (38%), Gaps = 51/390 (13%)
Query: 199 LVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRM 258
L E K + S ++ + + ++L+ ELEE E L E + EL + + +
Sbjct: 159 LKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSL 218
Query: 259 KAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAE 318
+E + K LE E++RY+ D E KS E+L Q E+A R+ N
Sbjct: 219 TSEQASSADNSVKIKHLEEELKRYEQ---DAEVVKSMKEQLLQIPELERELAALREEN-R 274
Query: 319 KLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRL 378
KL+ + E+N L +L DL S + E+L + + +L
Sbjct: 275 KLRSMKEDNELLK----------------EELEDLQSRLERFEKMREKLADL-ELEKEKL 317
Query: 379 ELENKRLLSTIESLHENA---------FYESGERILELEKEKKKLSLQVEDLEETKRRLS 429
E E K S ++ + N L+L+++ +S + LE T ++L
Sbjct: 318 ENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQ 377
Query: 430 AQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDE-------LDNMNREKQKLEWKNK 482
+ + S+ +L+ ++ + + L+ ++ + E L++ ++E + +
Sbjct: 378 LERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQ 437
Query: 483 EL--------------ELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAES 528
+ ++ QLS E++ + K + E EIK KE L S
Sbjct: 438 LMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERL 497
Query: 529 LDKLTNKLESMEKEHVSLTKQIEDQENELK 558
L + ++ + +L ++ + E
Sbjct: 498 LSFVKEATNALRLKIETLERERDRLRQEKS 527
Score = 33.7 bits (77), Expect = 0.48
Identities = 85/518 (16%), Positives = 201/518 (38%), Gaps = 34/518 (6%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ 493
+SK +LE E+ + ++ +++++ + L E +EL+ N+E+ +
Sbjct: 65 RSKSKLIQLENELMQKELEHKRAQIELERKASTLA---------ENYERELDRNLELEVR 115
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTK----- 548
L E + + + A E+E K K+ L++++ L KE +S K
Sbjct: 116 LKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSE 175
Query: 549 ---QIEDQENELK----KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNS 601
+ ++ + ELK + +L+ +++E + + L L ++ + + +K+
Sbjct: 176 MQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHL 235
Query: 602 LDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQS 661
++L D +++ E++L PE+ + +N L+ +L+ QS
Sbjct: 236 EEELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQS 295
Query: 662 QISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLR 721
++ LA+ +L L+ ++ + + + + I VL++
Sbjct: 296 RLERFEKMREK--LADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEEL 353
Query: 722 DVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEK 781
+K +N ++ QL+ + + LQ E ++ E L L + T K
Sbjct: 354 QLKEKNGSISSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTK 413
Query: 782 LKADFRAL---------QEEHKGNHMEKRKLTLSLTEL-EGELANRDDAISALSVQLSKY 831
+ RA+ + G M++ + L + + LA ++ +S L + +
Sbjct: 414 ERDGLRAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQ 473
Query: 832 QNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEK 891
+++ ++ + + L LL+ E + + + + + L ++K LE K
Sbjct: 474 KDRNNTLETEI-KLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMK 532
Query: 892 IMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSELINK 929
+ + D +S +K N + + + I
Sbjct: 533 LEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTIEA 570
Score = 30.7 bits (69), Expect = 4.2
Identities = 98/517 (18%), Positives = 177/517 (34%), Gaps = 35/517 (6%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
+ELE++ L+ E + L + E K E E + E + L+ ++
Sbjct: 86 RAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLD 145
Query: 462 VRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEA 521
+ +L N +E Q E K I LS T+L E E+++ +E
Sbjct: 146 AESLKLQN-EKEDQLKEAKESIS----RIKNDLSEMQCRAQNADTELKLLESELEELREQ 200
Query: 522 LE---SKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY-QVD 577
LE + +K L S + + +I+ E ELK+Y + + + Q+
Sbjct: 201 LEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIP 260
Query: 578 KNTLSVLQNDLVNEKLKTTHLKNSLDKLGL------------AMDDQTDAENILEKILSS 625
+ + N KL++ N L K L + D E EK+ +
Sbjct: 261 ELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENE 320
Query: 626 PEILNAVKKKLGVEHFNDESSLN--------NAKLEVDLKTSQSQISSLTSQHTALQLAN 677
+ ++ + +G+ + +L+ + S L + LQ
Sbjct: 321 LKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQ-LE 379
Query: 678 SQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENK--TVKEQYS 735
Q ++ EL + + L +L V KE L++ L E +V Q
Sbjct: 380 RQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKELTETSVSGQLM 439
Query: 736 QLKVSYESLQAEMEQLKFE-SHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHK 794
+ E L +++ + + LS L + + KD L T + LK + +
Sbjct: 440 KRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLS 499
Query: 795 GNHMEKRKLTLSLTELEGELANRDDAISALSVQLSK--YQNKLEDDRRKLMEHVTNLLAQ 852
L L + LE E S L ++L Q R K++ N ++
Sbjct: 500 FVKEATNALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASE 559
Query: 853 YHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLE 889
++ ++E E+ K L Q LE
Sbjct: 560 AEQIAKQTIEALQAECEKLKERLQALEEGKSQPGDLE 596
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 37.2 bits (86), Expect = 0.044
Identities = 58/283 (20%), Positives = 121/283 (42%), Gaps = 33/283 (11%)
Query: 286 LTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSV 345
L DLE + E L+ IN + + +++ +E ++ +L + + + N+ +
Sbjct: 155 LEDLEKILTEKEALQGK---INILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELL 211
Query: 346 SSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHEN--AFYESGER 403
A+ G +SLS++L L+ EN L I+ L E+ ER
Sbjct: 212 IRG-----ATEGLCVHSLSKELDV--------LKEENMLLKDDIQFLKAELIEVAETEER 258
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
+ +LEKE+ L + +LE + + AQ E SK + L+ + E +NL+ +
Sbjct: 259 VFKLEKERSLLDASLRELE--SKFIVAQ--EDVSKLSPLQYDC--WWEKVENLQDLLDRA 312
Query: 464 NDELDN---MNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
++++ + + Q L K +LE +++ ++ ++ + KL E+ ++
Sbjct: 313 TNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDH 372
Query: 521 ALESKAE----SLDKLTNKLESM--EKEHVSLTKQIEDQENEL 557
+ S + S+ + + L + E + SL +D +E
Sbjct: 373 EIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPADDMPSEF 415
Score = 33.0 bits (75), Expect = 1.1
Identities = 53/228 (23%), Positives = 90/228 (39%), Gaps = 31/228 (13%)
Query: 685 HNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESL 744
H E+L++Q+ KL +L + + + L L +K EN LK + L
Sbjct: 195 HVEILEEQLE--KLRNELLIRGATEGLCVHSLSKELDVLKEENML-------LKDDIQFL 245
Query: 745 QAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLT 804
+AE+ ++ + L E S L R L + + D L EK +
Sbjct: 246 KAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE-- 303
Query: 805 LSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLME--------HVTNLLAQYHEL 856
+L +L N+ + + + Q ++K++ L E + LL Q +L
Sbjct: 304 -NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKL 362
Query: 857 LTHSLEDKDH--------YHEEEKNFSDKLNNLHRQKEKLEEKIMEHY 896
L L+ DH Y E K F D L+ L KE+ +++ +EH
Sbjct: 363 LEERLQASDHEIHSYIQLYQESIKEFQDTLSKL---KEESKKRSLEHP 407
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 37.2 bits (87), Expect = 0.048
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 22/97 (22%)
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQ--------IEDQENELKKYNDLKREMDELDSK 573
++SK E LD+L ++ +E E +L K+ +ED E EL +L+ E +L+ +
Sbjct: 400 IDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELA---ELEEEYADLEEQ 456
Query: 574 YQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMD 610
++ +K + +K ++++ L ++
Sbjct: 457 WKAEKAAIQ-----------GIQQIKEEIEQVRLELE 482
Score = 31.9 bits (73), Expect = 2.3
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
RI++LE E++ +L+ E E +K RL LE E+ ++ E Y +LE Q +
Sbjct: 413 RIIQLEIERE--ALKKEKDEASKERLE-----------DLEKELAELEEEYADLEEQWKA 459
Query: 463 RNDELDNMNREKQKLEWKNKELE 485
+ + + K+++E ELE
Sbjct: 460 EKAAIQGIQQIKEEIEQVRLELE 482
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 36.5 bits (85), Expect = 0.055
Identities = 30/138 (21%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 427 RLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELEL 486
RL ++ T YE + LE + E+ + ++ ++ N +L+ +N K KL K + L+
Sbjct: 130 RLQSKKTWYEWRMQLLEGLKEGLEENLEGMKRDEELLNKDLNLINSIKPKLRKKLQALKE 189
Query: 487 NMEINKQLSN-----NTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEK 541
+ +QL++ + E+ + + +L + +I + ++ LE + L +LT +E++
Sbjct: 190 EIASLRQLADELNLCDPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTN 249
Query: 542 EHVSLTKQIEDQENELKK 559
+ L ++I + E ++
Sbjct: 250 KKSELLEEIAEAEKIREE 267
Score = 33.5 bits (77), Expect = 0.50
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKAL--- 275
EL + +LR +++ EK + L E + EL+ I + + EL E + +
Sbjct: 208 ELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLEEIAEAEKIREE 267
Query: 276 -----ESEIQRYKDKLTDLE 290
EI + K K++ L+
Sbjct: 268 CRGWSAKEISKLKAKVSLLQ 287
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 36.6 bits (85), Expect = 0.056
Identities = 35/186 (18%), Positives = 58/186 (31%), Gaps = 29/186 (15%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLE----- 457
+I E + ++ KL Q++ LE L AQ E KL +I +N LE
Sbjct: 53 KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQERE 112
Query: 458 --------------------LQIQVRNDELDNMNREKQKLEWKNKELELNMEI----NKQ 493
+ V ++ R N ++ KQ
Sbjct: 113 QRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQ 172
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ 553
L+ EI + +L E + + L E K +L S +++
Sbjct: 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRAN 232
Query: 554 ENELKK 559
E+ LK
Sbjct: 233 ESRLKN 238
Score = 32.8 bits (75), Expect = 0.87
Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 35/212 (16%)
Query: 488 MEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT 547
+KQL +EI + K+ + + K ++ L+S + L +L + L
Sbjct: 34 AADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLR 93
Query: 548 KQIEDQENELKKYNDLKREMDE-----LDSKYQVDKNTLSVLQNDLVNEK--LKTTHLKN 600
KQI D L +RE L + + +N L LV+ + ++ L
Sbjct: 94 KQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPAL---LVSPEDAQRSVRLAI 150
Query: 601 SLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVE---HFNDESSLN--------- 648
L A ++ DA L+ L L AV+ ++ E S
Sbjct: 151 YYGALNPARAERIDA---LKATLKQ---LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQL 204
Query: 649 -------NAKLEVDLKTSQSQISSLTSQHTAL 673
A+L +L Q ++ L + + L
Sbjct: 205 LEERKKTLAQLNSELSADQKKLEELRANESRL 236
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 36.8 bits (86), Expect = 0.057
Identities = 56/257 (21%), Positives = 93/257 (36%), Gaps = 44/257 (17%)
Query: 217 AVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSG---- 272
V LA LK L + +++ + EH + + E + L++ + +
Sbjct: 110 PVSLAQLKE-LGQLLIDIHGQHEHQSLLKPE--LQRQLLDAFAGLEELAQEAYQEAYQAW 166
Query: 273 KALESEIQRYKDK----LTDLEYYKSRVEELRQDNRAINEIAL-----ERDANAEKLQQL 323
K E++ ++K + + ++EEL + N E +R +N+EKL +
Sbjct: 167 KQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEA 226
Query: 324 IEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENK 383
I+ L LLS + S L + +A E + K
Sbjct: 227 IQNA--LELLSGEDD---------------------TVSALSLLGRALEALEDLSEYDGK 263
Query: 384 RLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT---EYESKFT 440
LS + L E A YE E EL +L LEE + RL A + +Y
Sbjct: 264 --LSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321
Query: 441 KLETEIRKINESYQNLE 457
L + KI E L+
Sbjct: 322 DLLEYLDKIKEELAQLD 338
Score = 35.7 bits (83), Expect = 0.14
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEE 500
+ ++ ++++ +++ ++ + L+++ +ELE E+N Q EE
Sbjct: 154 LAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELE---ELNLQ-PGEDEE 209
Query: 501 INEYKTKLANCEKEIKKCKEALE------SKAESLDKLT------NKLESMEKEHVSLTK 548
+ E + +L+N EK + + ALE +L L L + + L +
Sbjct: 210 LEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAE 269
Query: 549 QIEDQENELKK-YNDLKREMDELD 571
+E+ EL++ +L+ +DEL+
Sbjct: 270 LLEEALYELEEASEELRAYLDELE 293
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 36.2 bits (84), Expect = 0.064
Identities = 32/158 (20%), Positives = 68/158 (43%), Gaps = 2/158 (1%)
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
+ EL+KEKK + ++E L+ + ++ E + + + + EI+K+ + L+ I R
Sbjct: 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVER 99
Query: 464 NDELDNMNREKQKLEWKNKELE--LNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEA 521
+ L R Q ++ LN + L + I+ ++ K+ K++
Sbjct: 100 QELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKS 159
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
LE K +L+ L +++ E + + Q+ E
Sbjct: 160 LEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNA 197
Score = 33.2 bits (76), Expect = 0.63
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 456 LELQIQVRNDELDNMNREKQKLEWKNKELELNM-EINKQLSNNTEEINEYKTKLANCEKE 514
L +IQ ++ +L + +EK+ ++ + + L+ + EI ++ +EI++ K ++ +KE
Sbjct: 29 LSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88
Query: 515 IKKCKEALESKAESLDK 531
I + KE + + E L K
Sbjct: 89 IAELKENIVERQELLKK 105
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 35.6 bits (83), Expect = 0.070
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 480 KNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
K LE EI+K + E+ E + +L EK + + +E L+ K ESL+K LE
Sbjct: 52 KEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEK 111
Query: 540 EKEHVSLTKQIEDQENELKK 559
EKE + +Q+E++E EL++
Sbjct: 112 EKELAARQQQLEEKEEELEE 131
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 36.7 bits (85), Expect = 0.073
Identities = 31/134 (23%), Positives = 51/134 (38%), Gaps = 9/134 (6%)
Query: 412 KKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK---INESYQNLELQIQVRNDELD 468
++ + +E+ K E KL ++ NE + L + + EL+
Sbjct: 490 QRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELE 549
Query: 469 NMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAES 528
E+ K +NK+LEL E + L +E+ +L KE K K E
Sbjct: 550 QE-MEELKERERNKKLELEKEAQEALKALKKEVESIIREL----KEKKIHKAKEIKSIED 604
Query: 529 LDKL-TNKLESMEK 541
L KL K + +K
Sbjct: 605 LVKLKETKQKIPQK 618
Score = 30.9 bits (70), Expect = 3.7
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 491 NKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550
EEIN KL+ EKE+++ E LE + +KL +LE +E +
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562
Query: 551 E-DQENELKKY-NDLKREMDELDSKYQVDK-NTLSVLQNDLVNEKLKTTHLKNSLDKLGL 607
+ + E E ++ LK+E++ + + + K + +++ KLK T K
Sbjct: 563 KLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNF 622
Query: 608 AMDDQTDAENILEK 621
D D I
Sbjct: 623 QADKIGDKVRIRYF 636
Score = 30.9 bits (70), Expect = 4.0
Identities = 35/196 (17%), Positives = 72/196 (36%), Gaps = 19/196 (9%)
Query: 386 LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRR------------LSAQCT 433
LS +E E + + E EK KK+L ++E+L+E +R L A
Sbjct: 520 LSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKK 579
Query: 434 EYESKFTKLET--EIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNM--- 488
E ES +L+ + ++++ ++ Q + +K
Sbjct: 580 EVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYFGQK 639
Query: 489 -EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT 547
+I + L N + ++ E++K +A K + K T + L
Sbjct: 640 GKIVQILGGNKWNVTVGGMRMKVHGSELEKINKAPPPKKFKVPKTTKPEPKEASLTLDLR 699
Query: 548 -KQIEDQENELKKYND 562
++ E+ + L+K+ +
Sbjct: 700 GQRSEEALDRLEKFLN 715
Score = 30.2 bits (68), Expect = 6.2
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 1/139 (0%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
E A GE E+ +KLS ++LE+ L E E +LE E+ ++ E
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 454 QNLEL-QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCE 512
+N +L + + L + +E + + + KE +++ + + ++ E K K+
Sbjct: 560 RNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKP 619
Query: 513 KEIKKCKEALESKAESLDK 531
+ K + + +
Sbjct: 620 TNFQADKIGDKVRIRYFGQ 638
Score = 29.8 bits (67), Expect = 9.4
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKA-LES 277
E+ L KL ELE+K+EHL + E E K ++ EM EL+ R+ K LE
Sbjct: 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLK---KELEQEMEELKERERNKKLELEK 568
Query: 278 EIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSN 337
E Q L K VE + ++ + + + E L +L +E +N
Sbjct: 569 EAQEALKAL------KKEVESIIRELKEKKIHKAKEIKSIEDLVKL-KETKQKIPQKPTN 621
Query: 338 QCVD 341
D
Sbjct: 622 FQAD 625
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 36.6 bits (85), Expect = 0.075
Identities = 120/624 (19%), Positives = 262/624 (41%), Gaps = 54/624 (8%)
Query: 222 DLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQR 281
+L+++L ++ EL + S L + + + + I ++A + EL E + +A ++ ++
Sbjct: 8 ELENQLYRKESELSQLSSKLEDEQALVAQLQKKIKELEARIRELEEELEAERAARAKAEK 67
Query: 282 YKDKLT-DLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCV 340
+ L+ +LE R+EE A E+ +R+A KL++ +EE NL
Sbjct: 68 ARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEE-ANLQHEEALATLR 126
Query: 341 DNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL------HE 394
+ +L++ L +Q + + K+ +L+ E LL+ ++ + E
Sbjct: 127 KKHQDAINELSEQI------EQLQKQKAKAEKEKS-QLQAEVDDLLAQLDQIAKAKLNAE 179
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454
+ ++ EL+ + +L Q+ DL K RL ++ ++ + + E ++ +++
Sbjct: 180 KKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQSENSDLTRQLEEAEAQVSNLSKLKS 239
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINEYKTKLANCEK 513
LE Q++ L+ +RE+ L+ + ++LE +++ + +QL +E E + +L+
Sbjct: 240 QLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKANA 299
Query: 514 EIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSK 573
EI++ + ES+ + E +E+ L ++I + E + N +++ S+
Sbjct: 300 EIQQWRSKFESEG------ALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSR 353
Query: 574 YQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVK 633
Q + L + + + + DK+ LA + E E + E N
Sbjct: 354 LQSELEDLQIELERANAAASELEKKQKNFDKI-LAEWKRKVDELQAELDTAQREARNLST 412
Query: 634 KKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQM 693
+ +++ +E L + K Q +I LT Q L + +
Sbjct: 413 ELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQ------------LGEGGRNVHE-- 458
Query: 694 TMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKF 753
+ K +L E + + ++ ++ L +++ + + SQ++ E AE E+
Sbjct: 459 -LEKARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEE--- 514
Query: 754 ESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGE 813
N R H + + + A K KA+ L K+KL + ELE
Sbjct: 515 ---EFENTRKNHQRAIESLQATLEAEAKGKAEASRL----------KKKLEGDINELEIA 561
Query: 814 LANRDDAISALSVQLSKYQNKLED 837
L + + A + + KYQ ++++
Sbjct: 562 LDHANKANAEAQKNVKKYQQQVKE 585
Score = 36.6 bits (85), Expect = 0.078
Identities = 74/350 (21%), Positives = 146/350 (41%), Gaps = 24/350 (6%)
Query: 214 QHLAVELADLKSKLR---KQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEAR 270
L E+ DL ++L K +L E+K++ L EL+ + R ++ ++ +
Sbjct: 155 SQLQAEVDDLLAQLDQIAKAKLNAEKKAKQLESQLSELQVKLDELQRQLNDLTSQKSRLQ 214
Query: 271 SGKA-LESEIQRYKDKLTDLEYYKSRVE-ELRQDNRAINEIALERDANAEKLQQLIEENT 328
S + L +++ + ++++L KS++E +L + R++ E + ER +L+QL +
Sbjct: 215 SENSDLTRQLEEAEAQVSNLSKLKSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLD 274
Query: 329 NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLST 388
+L Q + + L+ + + S +A LE K+L
Sbjct: 275 SL-----REQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQK 329
Query: 389 IESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
I L E A + + LEK K +L ++EDL+ R +A +E E K + K
Sbjct: 330 ISELEEAA-EAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFD----K 384
Query: 449 INESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKL 508
I ++ ++Q ELD RE + L + + +L +++ + +
Sbjct: 385 ILAEWKRKVDELQA---ELDTAQREARNLSTE------LFRLKNELEELKDQVEALRREN 435
Query: 509 ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
N + EI + L ++ +L +E E L +E+ E L+
Sbjct: 436 KNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALEEAEAALE 485
Score = 30.0 bits (68), Expect = 7.3
Identities = 38/209 (18%), Positives = 79/209 (37%), Gaps = 24/209 (11%)
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454
N E +++ L +E K L ++ DL + E E +LE E ++ + +
Sbjct: 419 NELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGRNVHELEKARRRLEAEKDELQAALE 478
Query: 455 NLELQIQVRNDE----LDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLAN 510
E +++ + +++ + ++E + E E E ++ N+ I + L
Sbjct: 479 EAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTRK--NHQRAIESLQATL-- 534
Query: 511 CEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKY---------- 560
E E K EA K KL + +E K + + +KKY
Sbjct: 535 -EAEAKGKAEASRLK----KKLEGDINELEIALDHANKANAEAQKNVKKYQQQVKELQTQ 589
Query: 561 -NDLKREMDELDSKYQVDKNTLSVLQNDL 588
+ +R ++ + V + + L+ +L
Sbjct: 590 VEEEQRAREDAREQLAVAERRATALEAEL 618
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 36.4 bits (84), Expect = 0.086
Identities = 34/165 (20%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 404 ILELEKEKKKLSLQVED--LEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
I +LEK+ + + ++ D L E +++SA E ++L+++I K ++ ++E
Sbjct: 1166 IEKLEKQLQVIDTKLADAYLLEVTKQISALEKEKPKNQSELKSKIAKFFDTTADIE---V 1222
Query: 462 VRNDELDNMNREKQKLEWKN-KELELNME-INKQLSNNTEEINEYKTKLANCE-KEIKKC 518
+RN+ + K L+ + +L N++ +N+ L + I ++ L + K +
Sbjct: 1223 LRNERIKKHGSSKDPLDLSDLDKLSGNLQGVNQSLVSIL--ITTIRSSLNQMKPKTFEMQ 1280
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDL 563
++ ++ E L KL L+ + E ++ K DL
Sbjct: 1281 EKEIQQNFELLAKLEKTLDKSDT--------AEKLREDIPKLKDL 1317
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 36.1 bits (84), Expect = 0.099
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 489 EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALES-----KAESLDKLTNKLESMEKEH 543
E+ ++L EE+ E + +L +K +KK + K E L+KL E + +E
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 544 VSLTKQIEDQENELKKY 560
L +++++ + EL+
Sbjct: 391 EELEEELKELKEELESL 407
Score = 32.6 bits (75), Expect = 1.1
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 727 NKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRA-EHSKLKDDFRILFTANEKLKAD 785
+KE+ +L+ + L+ E+E++K L L +L + R EKL
Sbjct: 329 FPELKEELKELEEELKELEEELEKIK---KLLKKLPKKARGQLPPEKREQL---EKLLET 382
Query: 786 FRALQEEHKGNHMEKRKLTLSLTELEGELANR 817
L EE + +L L EL+ EL +
Sbjct: 383 KEKLSEELE-------ELEEELKELKEELESL 407
Score = 32.6 bits (75), Expect = 1.2
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 501 INEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKY 560
E K +L E+E+K+ +E L E + KL KL + + ++ E E L+
Sbjct: 329 FPELKEELKELEEELKELEEEL----EKIKKLLKKLPKKARGQLP-PEKREQLEKLLETK 383
Query: 561 NDLKREMDELDSKYQVDKNTLSVLQND 587
L E++EL+ + + K L L ++
Sbjct: 384 EKLSEELEELEEELKELKEELESLYSE 410
Score = 29.5 bits (67), Expect = 9.2
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEE 500
++ + ++ E + LE +++ +EL+ + + +KL K +L E +QL E
Sbjct: 324 EVGVDFPELKEELKELEEELKELEEELEKIKKLLKKLP-KKARGQLPPEKREQLEKLLET 382
Query: 501 INEYKTKLANCEKEIKKCKEALESKAE 527
+ +L E+E+K+ KE LES
Sbjct: 383 KEKLSEELEELEEELKELKEELESLYS 409
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 36.1 bits (83), Expect = 0.10
Identities = 56/406 (13%), Positives = 129/406 (31%), Gaps = 40/406 (9%)
Query: 177 EVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEE 236
M S K L K Q + E++R +S+ H+ ++ + +R+ +
Sbjct: 318 SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDA-HEVATSIREISCQQHT 376
Query: 237 KSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKL----TDLEYY 292
++H+ + + + + E+ L+ E + S + + +L E
Sbjct: 377 LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ 436
Query: 293 KSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLND 352
+ E + + ++ Q ++E L +K + +V L
Sbjct: 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQ-LQTKEQIHLQETRKKAVVLAR 495
Query: 353 LASPGSGDNSLSEQLTSSAQAKALRLELE-NKRLLSTIESLHENAFYESGERILELEKEK 411
L L A+ R + E + +LE +
Sbjct: 496 LLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE-----------QTYAQLETSE 544
Query: 412 KKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMN 471
+ + Q+ + + L Q E + F+ L + E NL+ D + ++
Sbjct: 545 EDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLS 604
Query: 472 REKQKL--EWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESL 529
+ L E +L E + Q + + L C +E+ AL + +L
Sbjct: 605 EAEDMLACEQHALLRKLQPEQDLQ---------DVRLHLQQCSQELALKLTALHALQLTL 655
Query: 530 DKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ 575
+ +EH + + + + + + ++ S+ +
Sbjct: 656 ------TQERVREHALSIRVLPKELLASR-----QLALQKMQSEKE 690
Score = 31.5 bits (71), Expect = 3.0
Identities = 89/592 (15%), Positives = 178/592 (30%), Gaps = 33/592 (5%)
Query: 227 LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKL 286
+ +Q + + + SR +L +A + ++ + E R ++ + E I+ +
Sbjct: 305 IEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVA 364
Query: 287 TDLEYYKSRVEELRQDNRAINEI-----ALERDANAEKLQQLIEENTNLSLLSKSNQCVD 341
T + + L Q + + + E E+ T + S
Sbjct: 365 TSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA------ 418
Query: 342 NQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESG 401
L +E ++ A +LE L + +SL E
Sbjct: 419 -FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQT 477
Query: 402 -ERILELEKEKKKLSLQV-EDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQ 459
E+I E KK + L +L+E L C ++ +
Sbjct: 478 KEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-----NPGPLTRRMQR 532
Query: 460 IQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCK 519
+ +L + E +L + L +EI + + L C+ K+
Sbjct: 533 GEQTYAQL------ETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
Query: 520 EALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKN 579
L++ L LT KL E + + + D++ + + + +
Sbjct: 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLT 646
Query: 580 TLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVE 639
L LQ L E+++ L + L Q + + + + + +
Sbjct: 647 ALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLL 706
Query: 640 HFNDESSLNNAKLEVDL-KTSQSQISSLTSQHTALQLANSQL------ILANHNELLQDQ 692
+ + ++ S S S L ++ AL + +L +L E +
Sbjct: 707 RELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNN 766
Query: 693 MTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYE-SLQAEMEQL 751
Q E + EI+ + + KT++ + Q S E L + E L
Sbjct: 767 NEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETL 826
Query: 752 KFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKL 803
E + E S + E+ L +E KL
Sbjct: 827 VQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
Score = 31.1 bits (70), Expect = 3.5
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 466 ELDNMNREKQK-LEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALES 524
+L M K+K L K + L L ++ + + Y + EKE+K +EAL+
Sbjct: 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTP--CMPDTYHERKQVLEKELKHLREALQQ 237
Query: 525 KAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSK 573
+S LT K E+ E E + + ++ +++ + ++E +
Sbjct: 238 TQQSHAYLTQKREAQE-EQLKKQQLLKQLRARIEELRAQEAVLEETQER 285
Score = 30.7 bits (69), Expect = 5.5
Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 19/215 (8%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
+ E + L E + K +R+ + Q + + +
Sbjct: 195 KAELLTLRSQLLTLCTPCMPDTY----HERKQVLEKELKHLREALQQTQQSHAYLTQKRE 250
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEIN---------EYKTKLANCEKEIK 516
+ +++Q L+ +E L E IN + + E++ +
Sbjct: 251 AQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
Query: 517 KCKEALESKAESLDKLTNKLESMEKEHVSLTKQ------IEDQENELKKYNDLKREMDEL 570
+ L+SK S KL K + K+ S+ +Q + QE ++ +++ + E+
Sbjct: 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI 370
Query: 571 DSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKL 605
+ + LQ K L LD L
Sbjct: 371 SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
>gnl|CDD|222855 PHA02529, O, capsid-scaffolding protein; Provisional.
Length = 278
Score = 35.1 bits (81), Expect = 0.12
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 483 ELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKE 542
E E E+ + + K A +++ EA+E AE +D + ++ + E
Sbjct: 164 EFEPEAELAALFEKVKKLFSRKKEDDAMTDEQFADVHEAVEGVAEKIDHTSAQVATTETA 223
Query: 543 HVSLTKQIEDQENEL-KKYNDLKREMDELDSKYQVDKNT 580
+ ++ E ++++ LK +D+L SK+ +
Sbjct: 224 EPPQEGKDTEENGETAEQFSALKETLDKLASKFNEEVPA 262
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 35.9 bits (82), Expect = 0.15
Identities = 71/377 (18%), Positives = 134/377 (35%), Gaps = 19/377 (5%)
Query: 224 KSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE----ARSGKALESEI 279
K++ K+ E ++K+E E++ E K KA+ + +AE A K E
Sbjct: 1439 KAEEAKKADEAKKKAE---EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495
Query: 280 QRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQL--IEENTNLSLLSKSN 337
++ D+ K + +E ++ A ++ A+K + EE L K+
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
Query: 338 QCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLEL---ENKRLLSTIESLHE 394
+ + + A + A+ + + E ++ + E+
Sbjct: 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA 1615
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454
E + + E+EKKK+ + E K++ E K E +K E +
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Query: 455 NLELQIQVRNDE------LDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKL 508
E + DE L E +K E K+ + ++L EE +
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
Query: 509 ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568
+E KK E + E K+ + + EK+ + K+ E E D KR M
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM- 1794
Query: 569 ELDSKYQVDKNTLSVLQ 585
E+D K + + + +
Sbjct: 1795 EVDKKIKDIFDNFANII 1811
Score = 33.2 bits (75), Expect = 0.98
Identities = 74/403 (18%), Positives = 157/403 (38%), Gaps = 18/403 (4%)
Query: 408 EKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDEL 467
E+ KKK + EE K+ A E E+ + E K + + E + + + D
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE-EAKKKADAA 1383
Query: 468 DNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK-- 525
EK+K + E + E +K+ ++ ++ K K +K+ ++ K+A E+K
Sbjct: 1384 KKKAEEKKKAD----EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK 1439
Query: 526 ---AESLDKLTNKLESMEKEHVSLTKQIEDQE-NELKKYNDLKREMDELDSKYQVDKNTL 581
A+ D+ K E +K + K E ++ +E KK + ++ DE K + K
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499
Query: 582 SVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNA--VKKKLGVE 639
+ K K K + + + + ++ + E A +KK ++
Sbjct: 1500 DEAKKA-AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
Query: 640 HFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLH 699
++ AK + K + + + + A + ++ + E + + K
Sbjct: 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAEEAKKA 1615
Query: 700 EQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLS 759
E+ ++ E + K + K + K E + K+ +LK + E + + + ++
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA-EELKKAEEENKIKAAEEAKKAEEDK 1674
Query: 760 NLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRK 802
E K ++D + A +K + + +E K EK+K
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Score = 31.6 bits (71), Expect = 2.8
Identities = 71/409 (17%), Positives = 149/409 (36%), Gaps = 28/409 (6%)
Query: 217 AVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEML----ELRAEARSG 272
A E A +++ E E+ E + E KA + KAE E + +A
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 273 KALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSL 332
K E+++ + K + EE ++ + A + E A++ ++ EE
Sbjct: 1404 KKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA--EEAKKADEAKKKAEEAKKAEE 1461
Query: 333 LSKSNQC------VDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLL 386
K + ++ + ++ +++ +A+AK E +
Sbjct: 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
Query: 387 STIESLHENAFYESGERILELEKEKK----KLSLQVEDLEETKRRLSAQCTEYESKFTKL 442
+ + + + + E++KK K + +++ EE K+ A+ E +
Sbjct: 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALR 1581
Query: 443 ETEI------RKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSN 496
+ E +I E + E + +++ +E K K E K E ++ +
Sbjct: 1582 KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 497 NTEEINEY-KTKLANCEKEIKKCKEALES-----KAESLDKLTNKLESMEKEHVSLTKQI 550
EE + + K A E +IK +EA ++ KAE K + + ++
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Query: 551 EDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLK 599
+ E KK + K++ +EL + +K + + +K K K
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 31.6 bits (71), Expect = 3.0
Identities = 63/391 (16%), Positives = 147/391 (37%), Gaps = 23/391 (5%)
Query: 187 AKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRD 246
A+E+ + + + EE + + + + K K + + E + D
Sbjct: 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Query: 247 ELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAI 306
E E + + + E + +A + K E ++ + E K + +EL++
Sbjct: 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK----- 1412
Query: 307 NEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQ 366
A A++ ++ EE K + ++ + + A ++
Sbjct: 1413 ---AAAAKKKADEAKKKAEEKKKADEAKKKAE----EAKKADEAKKKAEEAKKAEEAKKK 1465
Query: 367 LTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKR 426
+ +A + + E + + E A ++ E + E KK + + + EE K+
Sbjct: 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE--AKKAAEAKKKADEAKKAEEAKK 1523
Query: 427 RLSAQCTEYESKFTKLET--EIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKEL 484
A+ E K + + E +K +E + EL+ + + + ++ ++
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
Query: 485 ELNMEINK----QLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESME 540
E + + ++ EE + K + A +E K E L+ KAE K +L+ E
Sbjct: 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK-KAEEEKKKVEQLKKKE 1642
Query: 541 KEHVSLTKQI--EDQENELKKYNDLKREMDE 569
E +++ ++EN++K + K+ ++
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Score = 30.5 bits (68), Expect = 5.2
Identities = 35/200 (17%), Positives = 80/200 (40%), Gaps = 6/200 (3%)
Query: 381 ENKRLLSTIESLHENAFYESGERILELEK--EKKKLSLQVEDLEETKRRLSAQCTEYESK 438
E +R + E+ ++ E +K E+ K + + + EE ++ A+ + +
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268
Query: 439 FTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNT 498
++ E + + + E + + + EK+K + K+ E + + +
Sbjct: 1269 QAAIKAEEARKADELKKAE---EKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKA 1324
Query: 499 EEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
EE + +E KK EA +++AE+ E + ++ + + + K
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 559 KYNDLKREMDELDSKYQVDK 578
K + K++ DE K + DK
Sbjct: 1385 KKAEEKKKADEAKKKAEEDK 1404
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 35.4 bits (81), Expect = 0.15
Identities = 58/284 (20%), Positives = 112/284 (39%), Gaps = 21/284 (7%)
Query: 480 KNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
+ E + +L EE N+ K +L EKE + + LES +++ L KLE
Sbjct: 24 LPQRSERVLVKETELMLAQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLEKA 83
Query: 540 EKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLK 599
EKE + E + + E+++ + +V++ + + D V E+L+ +
Sbjct: 84 EKEEQQAKQDSELAKLRAE-------ELEQGIQELEVERYITATAELDSVKEELRKIRQE 136
Query: 600 NSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTS 659
++++ A E+ + + ++ ++L E + SL A
Sbjct: 137 YD-----ALVEERDAALKRAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEE 191
Query: 660 QSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQL---NMEYESVVKEIKVL 716
+ ++L E L+ + K E+L + E ES+ KEI ++
Sbjct: 192 ERIGAALEKDQDRETYEKELKEAEKELERLKQDLDPEKDLEKLAEASAELESLQKEISIM 251
Query: 717 KST------LRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFE 754
S L + K + E+ L+ ESL+ E+E+ K E
Sbjct: 252 ASVASVLKELEEAKANLEKAAEEEKSLRNLVESLKQELEEEKKE 295
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 35.7 bits (82), Expect = 0.16
Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 24/133 (18%)
Query: 710 VKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLK 769
VK I VLKS+ +K+ + K Q K++ + L A S + E
Sbjct: 21 VKNINVLKSS---IKDSTQFWKMLEKQQKLTKDGLSA------------SKGKYE----- 60
Query: 770 DDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLS 829
L A EK K + L++E K + + + E + ++ + +LS Q
Sbjct: 61 ----GLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFG 116
Query: 830 KYQNKLEDDRRKL 842
+L ++++
Sbjct: 117 VASEQLMLQQKEI 129
>gnl|CDD|225272 COG2409, COG2409, Predicted drug exporters of the RND superfamily
[General function prediction only].
Length = 937
Score = 35.5 bits (82), Expect = 0.17
Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 23/120 (19%)
Query: 283 KDKLTDLEYYKSRVEELRQDNRAIN------------EIALERDANAEKLQQLIEENTNL 330
D Y V+ LR D R +N E+A +D A Q + +
Sbjct: 82 GLTDADHALYDKLVDALRADTRDVNVVQDFVSDPLTAELAQSKDGKAAYAQLTLAGYLGV 141
Query: 331 SLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIE 390
+ ++S ++V S+ A G TS+ A R L IE
Sbjct: 142 TQANES-----VEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAA------GARDLKVIE 190
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 35.5 bits (82), Expect = 0.18
Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 19/201 (9%)
Query: 405 LELEKEKKKLSLQVEDLEETK---RRLSAQCTEYESKFTKLETEIRK-INESYQNLELQI 460
+++E+ K L+ + ++L E + LE ++ + + YQ+ L +
Sbjct: 719 IKVERGNKILAKLFGRFLKAFNALKKLYEFAYTLEEEIQYLEDLLKARLEKDYQSKYLDL 778
Query: 461 QVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
D L++ K K K +L+ + + I+ L +
Sbjct: 779 I---DNLNDAREIKDKES-KAIDLDDIDFELELIGKQEINIDYILELLQTFNDKNGA--- 831
Query: 521 ALESKAESLDKLTNK-LESMEKEHVSLTKQIEDQENELKKYNDLKRE-MDELDSKYQVDK 578
ESL +L + ++ ++ K IE + +Y K + ++L+ Y + K
Sbjct: 832 -----YESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAK 886
Query: 579 NTLSVLQNDLVNEKLKTTHLK 599
Q E L L
Sbjct: 887 KEEEFKQF-AEEEGLNEEELA 906
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 35.4 bits (81), Expect = 0.20
Identities = 64/364 (17%), Positives = 148/364 (40%), Gaps = 38/364 (10%)
Query: 229 KQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTD 288
Q+++ + + E + +++ ++ +L + K+ E+E+ K++L +
Sbjct: 199 GQKVQEHQMELKYLKQYKEKACE--IRDQITSKEAQLESSREIVKSYENELDPLKNRLKE 256
Query: 289 LEYYKSRVEELRQDNRAINEIALERDANAEKLQQL--------------IEENTNLSLLS 334
+E+ S++ +L + +A+ + + + +L+ + N ++
Sbjct: 257 IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVRE 316
Query: 335 KSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHE 394
K + VD Q LN + + + Q +A R + + S I+SL
Sbjct: 317 KERELVDCQRELE-KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLAT 375
Query: 395 NAFYESGERILELEKE-KKKLSLQVEDLEETKRRLSAQCTEYESK-------FTKLETEI 446
+ ER E++ K +L +E E+ + + C + +SK ++ E
Sbjct: 376 RLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEK 435
Query: 447 RKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKE-LELNMEINKQLSN--------N 497
+ + + + + ++ + +EL + +E Q+LE + LEL+ E+ K
Sbjct: 436 KGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSL 495
Query: 498 TEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL 557
TE + + L N + ++ + L+ + E L+ T ME LTK D++ ++
Sbjct: 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQME----MLTKDKMDKDEQI 551
Query: 558 KKYN 561
+K
Sbjct: 552 RKIK 555
Score = 30.4 bits (68), Expect = 6.6
Identities = 85/453 (18%), Positives = 183/453 (40%), Gaps = 49/453 (10%)
Query: 467 LDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKA 526
L+ + + +Q K +E ++ ++ KQ E+ E + ++ + E +++ +E ++S
Sbjct: 188 LETLRQVRQTQGQKVQEHQMELKYLKQ---YKEKACEIRDQITSKEAQLESSREIVKSYE 244
Query: 527 ESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQN 586
LD L N+L+ +E I +NE+K K++M++ +S+ ++ + +
Sbjct: 245 NELDPLKNRLKEIEHNLSK----IMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTD 300
Query: 587 DLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESS 646
+ +N+ L H + +K + D + LEK+ +LN K +L VE
Sbjct: 301 EQLND-LYHNHQRTVREK----ERELVDCQRELEKLNKERRLLNQEKTELLVE------- 348
Query: 647 LNNAKLEVDLKTSQSQISSLTSQHTALQL--------ANSQLILANHNELLQDQMT---- 694
+L+ D + Q A +L S+ + N + L+ ++
Sbjct: 349 QGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAK 408
Query: 695 -----MTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQ---A 746
L + ++ E + K R ++ + + ++++ +LK + LQ
Sbjct: 409 TAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
Query: 747 EMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLS 806
+++ L E SK + + E LK + ++LQ E + RKL
Sbjct: 469 SSDRILELDQELRKAERELSKAEKNSLT-----ETLKKEVKSLQNEKADLDRKLRKLDQE 523
Query: 807 LTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDH 866
+ +L R ++ K + ++ + + + +T+LL + LED H
Sbjct: 524 MEQLNHHTTTRTQMEMLTKDKMDKDE-QIRKIKSRHSDELTSLLGYFPN--KKQLEDWLH 580
Query: 867 YHEEEKNFS-DKLNNLHRQKEKLEEKIMEHYRK 898
+E N + D+L L+++ LE+ H
Sbjct: 581 SKSKEINQTRDRLAKLNKELASLEQ-NKNHINN 612
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 35.2 bits (81), Expect = 0.20
Identities = 50/225 (22%), Positives = 77/225 (34%), Gaps = 20/225 (8%)
Query: 696 TKLHEQLNMEYESVVK------EIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME 749
TKL E LN E +S+ K +I L L+ +NE +++Y+ ES +AE
Sbjct: 160 TKLLEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEAEKEYATYHKLLESRRAEHA 219
Query: 750 QLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHME----KRKLTL 805
+L L R L+D + E + L++E E R L
Sbjct: 220 RLAELRSELRADRDHIRALRDAVELWPRLQEW-----KQLEQELTRRREELATFPRDGVL 274
Query: 806 SLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKD 865
L + E L + I AL V+L++ D + + Q L L +
Sbjct: 275 RLEKREAHLQKTEAEIDALLVRLAE-----LKDLASQLIPAKEAVLQALVRLHQQLSEIK 329
Query: 866 HYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKS 910
E + R KE+ E R D S +
Sbjct: 330 ASAFELTETLAGIEADLRDKEEAAGNGFEAERVHDLRSLECMLRY 374
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 34.8 bits (80), Expect = 0.27
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 26/173 (15%)
Query: 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQL 494
+ S +L+ + ++ E L I D+L+N E K + K++
Sbjct: 336 FVSLINRLKASVNQVFEFEIYLYKIINANPDKLENKKIEISIKPEKKTINNSQIITTKKI 395
Query: 495 SNNTEEINE--------YKTKLANCEKEIKKCKEALESKAESL---------------DK 531
N EE N+ YKTK+ +K+I + + + K E L D+
Sbjct: 396 -NIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKNDE 454
Query: 532 LTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVL 584
L + LE +++ K IE +N L+K+N K E +S + K VL
Sbjct: 455 LLDNLELAKQKFF--NKDIELSKNMLQKFNKFKNEESAENSFIDIIKQADLVL 505
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 34.6 bits (80), Expect = 0.27
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 8/139 (5%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEIN-- 491
++ IN+ Q L QI E + + + + E E IN
Sbjct: 785 LIITEILSDGINNSDINDRPQELIDQII--ESEEERLKALRIQREEMLMRPEELELINEE 842
Query: 492 ----KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLT 547
KQ + + E K ++ + L+KL + + K +S
Sbjct: 843 QKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSD 902
Query: 548 KQIEDQENELKKYNDLKRE 566
+ +D++ KK DL++
Sbjct: 903 EIKQDEKTTKKKKKDLEKT 921
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 34.7 bits (80), Expect = 0.29
Identities = 60/427 (14%), Positives = 139/427 (32%), Gaps = 55/427 (12%)
Query: 273 KALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSL 332
++ + I + + + + + E + R A+K + + + + L
Sbjct: 813 RSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK-RFSLLKKETIYL 871
Query: 333 LSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL 392
S V+ +L S ++ +L S +E K+ LS+ L
Sbjct: 872 QSAQR--VELAERQLQELKIDVKSISSLKLVNLELESEI--------IELKKSLSS--DL 919
Query: 393 HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINES 452
EN +++ E I L+K + +E+ + + + +KL+ + +
Sbjct: 920 IENLEFKT-ELIARLKKLLNNI--DLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDL 976
Query: 453 YQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCE 512
+ + ++ N + K++L +K+ L +T+++ E ++A +
Sbjct: 977 LKKSTILVREGNKANSELKNFKKELAELSKQYG-------ALQESTKQLKELPVEVAELQ 1029
Query: 513 KEIKKCKEALESKA--ESLDKLTNKLESMEKEH-----------------VSLTKQIEDQ 553
K + + L KL L + Q+E
Sbjct: 1030 SASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST 1089
Query: 554 ENELKKYNDLKREMDELDSKYQVDKNTLSVLQ----------NDLVNEKLKTTHLKNSLD 603
EN LK N E+ + + V Q + +++ + T
Sbjct: 1090 ENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKL 1149
Query: 604 KLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQI 663
+ D E LE + S P +K+L + + + ++ ++++
Sbjct: 1150 SVLQLELDGLFWEANLEALPSPPPFAALSEKRL---YQSALYDEKSKLSSSEVNDLKNEL 1206
Query: 664 SSLTSQH 670
+L S+
Sbjct: 1207 IALFSKI 1213
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 34.1 bits (78), Expect = 0.33
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
+NA +G + L+ E L E+L+E L + E + +LE E ++ E
Sbjct: 113 KNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERL 172
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLS 495
+ LE++ + L + E L+ + ELE +E+ ++
Sbjct: 173 KRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214
Score = 31.4 bits (71), Expect = 2.4
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE----ARSGKA 274
E DLK + + +LEE + E ELE +A ++ + L E K
Sbjct: 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKK 188
Query: 275 LESEIQRYKDKLTDLEYYKSRVEELR 300
L E+ K + +LE EE
Sbjct: 189 LPGEVYDLKKRWDELEPGVELPEEEL 214
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 34.5 bits (80), Expect = 0.36
Identities = 68/304 (22%), Positives = 118/304 (38%), Gaps = 88/304 (28%)
Query: 216 LAVELADLKSKLRKQRLELEEKS---EHLTESRDELEHHKALINRMKAEMLELRAEARSG 272
L E A L ++ QR LE + + L + RD L A I R++ ++ L+ EA +
Sbjct: 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYL---TARIQRLEHQLQLLQ-EAINS 252
Query: 273 KAL-ESEIQRYKDKLTDLEYYKSRVEELR--QDNRAINE---IALERDANAEKLQQLIEE 326
K L SE V+E + + I +A E + N + Q+L++
Sbjct: 253 KRLTLSEKT---------------VQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKA 297
Query: 327 NTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLL 386
L+ L++ N V N D + Q L+ L LL
Sbjct: 298 TEKLNTLTQQNLRVKNWL---------------DRLTQSERNIKEQISVLKGSL----LL 338
Query: 387 STIESLHENAFYESGERILELEKEK-------KKLSLQVEDL-----EETKRRLSAQCTE 434
S RIL +++ + L+ ++ DL E ++R
Sbjct: 339 S---------------RILYQQQQALPSADLIEGLADRIADLRLEQFEINQQR------- 376
Query: 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQK-LEWKNKEL--ELNMEIN 491
+ + I K+ E+ E+ +VR+ L + E+++ L+ NK+L +LN+ IN
Sbjct: 377 --DALFQPDAYIDKL-EAGHKSEVTDEVRDA-LLQLLDERRELLDQLNKQLNNQLNLAIN 432
Query: 492 KQLS 495
QL+
Sbjct: 433 LQLN 436
Score = 33.0 bits (76), Expect = 1.0
Identities = 46/242 (19%), Positives = 102/242 (42%), Gaps = 30/242 (12%)
Query: 279 IQRYKDKLTDLEYYKSRV----EELRQDNRAINEIALERDANAEKLQQLIEENTNL-SLL 333
I R K++ L K ++ +LRQ + AL+ D + E + L +L L
Sbjct: 75 IDRQKEETEQL---KQQLAQAPAKLRQAQAELE--ALKDDNDEETRETL--STLSLRQLE 127
Query: 334 SKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQL-----TSSAQAKALRLELENKRLLST 388
S+ Q +D + DL + S + E+ +S + + +R L+ ++
Sbjct: 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGK 187
Query: 389 IESLHENAFYESGERILELEKEKKKLSL----QVEDLEETKRRL-SAQCTEYESKFTKLE 443
+ ++ + +L + + ++ SL Q++DL + +R +A+ E + L+
Sbjct: 188 ALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQ 247
Query: 444 TEI--RKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEI 501
I +++ S + ++ N + ELE+N++++++L TE++
Sbjct: 248 EAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQ------ELEINLQLSQRLLKATEKL 301
Query: 502 NE 503
N
Sbjct: 302 NT 303
Score = 31.8 bits (73), Expect = 2.3
Identities = 66/325 (20%), Positives = 125/325 (38%), Gaps = 74/325 (22%)
Query: 461 QVRNDELDNMNREKQKLEWKNK----ELELNMEINKQLSNNTEEINEYKTKLANCEKEIK 516
V+ LD +N++K LE ++K +LE + + ++ EE + K +LA +++
Sbjct: 40 DVQAQ-LDALNKQKL-LEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLR 97
Query: 517 KCKEALE--------SKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYN------- 561
+ + LE E+L L+ L +E Q+++ +N+L +YN
Sbjct: 98 QAQAELEALKDDNDEETRETLSTLS--LRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQ 155
Query: 562 ------------DLKR--EMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGL 607
+ +R ++ L +V L Q L+ + + +N L + L
Sbjct: 156 TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSL 215
Query: 608 AMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISS-- 665
+ Q L+ +L D + +LE L+ Q I+S
Sbjct: 216 EGNTQ------LQDLLQKQR---------------DYLTARIQRLEHQLQLLQEAINSKR 254
Query: 666 LT-SQHTALQLANSQLIL-ANHNELLQDQM-TMTKLH-------EQLNMEYESVVKEIKV 715
LT S+ T + + N L+ ++ +L E+LN + ++V
Sbjct: 255 LTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLN---TLTQQNLRV 311
Query: 716 LKSTLRDVKNENKTVKEQYSQLKVS 740
K+ L + + +KEQ S LK S
Sbjct: 312 -KNWLDRLTQSERNIKEQISVLKGS 335
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 33.9 bits (78), Expect = 0.41
Identities = 25/106 (23%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 463 RNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEAL 522
+N D REK ++ KN+ L + KQL ++I+E K E IKK ++AL
Sbjct: 516 KNAAEDKEKREK--IDLKNQAESLCYQAEKQLKELKDKISE--EKKEKIENLIKKLRQAL 571
Query: 523 ESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568
++ ++ + + + LE ++K + + K++ + ++ +D
Sbjct: 572 QN--DNYESIKSLLEELQKALMEIGKEVYSSTSTTDPASNDDDVID 615
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 33.7 bits (78), Expect = 0.42
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
ER+ LE+ +L Q+ LE R L A+ + E + +L++E+ K
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEK 47
Score = 29.8 bits (68), Expect = 6.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 700 EQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLK 752
E L + ++I+ L+ LRD++ EN+ +L+ E L++E+E+LK
Sbjct: 4 EALEERNSELEEQIRQLELKLRDLEAENE-------KLERELERLKSELEKLK 49
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 34.1 bits (79), Expect = 0.44
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 16/119 (13%)
Query: 246 DELEHHKALINRMKAEMLELRAEARSG-------KALESEIQRYKDKLTDLEYYKSRVEE 298
LE + I ++ E+ L EA G L +E+ + +L LE + +E
Sbjct: 419 AALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478
Query: 299 LRQDNRAINEIAL-----ERDANAEKLQQLIEENTNLSLLSKSN----QCVDNQSVSSV 348
L + A+ D +A QL E L+ VD Q+V+ V
Sbjct: 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEV 537
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 34.3 bits (79), Expect = 0.47
Identities = 47/258 (18%), Positives = 95/258 (36%), Gaps = 33/258 (12%)
Query: 441 KLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNM---EINKQLSNN 497
KLE E+ +++ + ++ V N EL N +K+ L + K+L I K+
Sbjct: 1003 KLERELARLSNKVRFIKH---VINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKI 1059
Query: 498 TEEINEYKTK-----LANCEKEIKKCKE--ALESK------AESLDKLTNKLESMEKEHV 544
T E E + + E+E+ L S E ++KL +LE EKE
Sbjct: 1060 TAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELE 1119
Query: 545 SL-TKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLD 603
L +D E DL + + L+ + +V++ ++ Q K K + L+
Sbjct: 1120 KLKNTTPKDMWLE-----DLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKL 1174
Query: 604 KLGLAMDDQTDAENILE--------KILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVD 655
K ++ A+ + ++ S + K + + ++ + +
Sbjct: 1175 KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTK 1234
Query: 656 LKTSQSQISSLTSQHTAL 673
K S + +++
Sbjct: 1235 PKKSSVKRLKSKKNNSSK 1252
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 34.0 bits (79), Expect = 0.49
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
K + + E++NE L E+E LE KAE + L L+ EK L ++ E
Sbjct: 509 KLIGEDKEKLNELIASLEELERE-------LEQKAEEAEAL---LKEAEKLKEELEEKKE 558
Query: 552 DQENELKKYNDLKREMDELDSKYQ 575
+ E K ++E + + Q
Sbjct: 559 KLQEEEDK------LLEEAEKEAQ 576
Score = 33.6 bits (78), Expect = 0.56
Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 41/240 (17%)
Query: 408 EKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDEL 467
E+ KK + E L E L E E K + E +++ + + LE +
Sbjct: 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKK------- 557
Query: 468 DNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAE 527
EK + E E E + + +E +E +L +K +A E E
Sbjct: 558 -----EKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELI-E 611
Query: 528 SLDKLTNKLESMEKE-HVSLTKQIEDQENELKKY---------------NDLKREMDELD 571
+ +L E EK+ KQ E + + KY + + +
Sbjct: 612 ARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIM- 670
Query: 572 SKYQVDKNTLSVLQNDLVNEK-------LKTTHLKNSLDKLGLAMDDQTDAENILEKILS 624
K +V + L +Q +K K + LD G+ + +A L+K L
Sbjct: 671 -KMKVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYE---EALERLDKYLD 726
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 32.8 bits (75), Expect = 0.51
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 489 EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTK 548
E+ +QLS EE+ + + ++A E E++ KE L+ E L L +LES+E+ L K
Sbjct: 83 ELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAK 142
Query: 549 QIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKL 593
++ + DL+ E++EL + + + L LQ + +
Sbjct: 143 ELRELR------QDLREEVEELREELERLQENLQRLQEAIQELQS 181
Score = 29.3 bits (66), Expect = 6.2
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQN-LELQI 460
ERI ELE E + L ++ L E + L + E +L E+R++ + + +E
Sbjct: 100 ERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAKELRELRQDLREEVEELR 159
Query: 461 QVRNDELDNMNREKQKLEWKNKELE 485
+ +N+ R ++ ++ LE
Sbjct: 160 EELERLQENLQRLQEAIQELQSLLE 184
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 33.3 bits (77), Expect = 0.58
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQC----TEYESKFTKLETEIRKIN 450
+++LEL++E++KL ++E+L+ + LS + E +L E++++
Sbjct: 22 GGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELK 81
Query: 451 ESYQNLELQIQVRNDELD 468
E + LE + ELD
Sbjct: 82 EKLKELEAALDELEAELD 99
Score = 32.2 bits (74), Expect = 1.6
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
K L L+ E ++LL +E L E E E+ + K+ E+L + L +
Sbjct: 30 KLLELDEERRKLLRELEELQA----ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLK 85
Query: 434 EYESKFTKLETEIRKINESYQNLELQ-IQVRNDELDN 469
E E+ +LE E+ + + N+ + + V DE DN
Sbjct: 86 ELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDN 122
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 32.7 bits (75), Expect = 0.60
Identities = 26/163 (15%), Positives = 58/163 (35%), Gaps = 8/163 (4%)
Query: 747 EMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLS 806
+++L E L E K + E L AL+ E + + +L
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAEL---EALNKALEALEIELEDLENQVSQLESE 67
Query: 807 LTELEGELANRDDAISALS--VQLSKYQ---NKLEDDRRKLMEHVTNLLAQYHELLTHSL 861
+ E+ + ++ +SA+ +L ++ L + + L+ + +L
Sbjct: 68 IQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127
Query: 862 EDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSS 904
+ K+ EKN ++ L + ++ E+ E K +
Sbjct: 128 DLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE 170
Score = 30.4 bits (69), Expect = 4.1
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 489 EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTK 548
+++ + I E + L + E++ +ALE+ L+ L N++ +E E + +
Sbjct: 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73
Query: 549 QIEDQENELKK------YNDLKREMDELDSK 573
+I+ E +L L E+ +
Sbjct: 74 RIKRAEEKLSAVKDERELRALNIEIQIAKER 104
Score = 29.3 bits (66), Expect = 9.3
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 226 KLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK----ALESEIQR 281
++K LE + + E R L+ KA + + + L E + LESEIQ
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE 70
Query: 282 YKDKLTDLEYYKSRV---EELRQDNRAINEIALERDANAEKLQQLIEENTNLS 331
++++ E S V ELR N I ++ ++L +L+EE L
Sbjct: 71 IRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123
Score = 29.3 bits (66), Expect = 9.6
Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV--- 462
LE K++ ++ + L+ E + LE ++ ++ Q + +I+
Sbjct: 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80
Query: 463 ------RNDELDNMNREKQKLEWKNKELELNM-EINKQLSNNTEEINEYKTKLANCEKEI 515
EL +N E Q + + LE + E+ +++ +EI + K +L EK +
Sbjct: 81 KLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140
Query: 516 KKCKEALESKAESLDK 531
+ + LE + + +
Sbjct: 141 AEAEARLEEEVAEIRE 156
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 31.6 bits (72), Expect = 0.68
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 640 HFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLH 699
+ + + LK Q++++S +Q L LA NE Q
Sbjct: 19 QRLRNARADLERANRVLKAQQAELASKANQLIVLL------ALAKRNEEAQ--------- 63
Query: 700 EQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQ 736
QL + + + + +K EN+ ++
Sbjct: 64 AQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100
>gnl|CDD|237833 PRK14845, PRK14845, translation initiation factor IF-2;
Provisional.
Length = 1049
Score = 33.3 bits (76), Expect = 0.82
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 499 EEINE---YKTKLANCE----KEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
E++ + +K + E + + + ++E +++LDK LE ++H L
Sbjct: 339 NELSSNIPFYSKYESEEAPSYEILMEILNSIERGSKNLDKKIAVLEGKIRDHNYLKAFES 398
Query: 552 DQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVN 590
D + K +L RE+ E+ + D + ++N + N
Sbjct: 399 DGLIKDGKLTELGRELLEVWRNREFDSKDVDYIRNLIEN 437
>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain. Mitosin or
centromere-associated protein-F (Cenp-F) is found bound
across the centromere as one of the proteins of the
outer layer of the kinetochore. Most of the
kinetochore/centromere functions appear to depend upon
binding of the C-terminal par to f the molecule, whereas
the N-terminal part, here, may be a cytoplasmic player
in controlling the function of microtubules and dynein.
Length = 288
Score = 32.8 bits (74), Expect = 0.83
Identities = 37/160 (23%), Positives = 75/160 (46%), Gaps = 7/160 (4%)
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
+IQ +LD + +EKQ+ +++ LE ++ KQ ++ KT+ AN ++E ++
Sbjct: 19 KIQELEGQLDKLKKEKQQRQFQLDSLEAALQKQKQ------KVENEKTEGANLKRENQRL 72
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKY-NDLKREMDELDSKYQVD 577
E E ++ K++++L+ E + Q+ + +++K +LKR EL+ Q
Sbjct: 73 MEICEHLEKTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132
Query: 578 KNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAEN 617
++ L +K+ T L S G +D + N
Sbjct: 133 QSADVSLNPCSTPQKIFATPLTPSQYYSGSKYEDLKEKYN 172
Score = 30.2 bits (67), Expect = 5.9
Identities = 27/125 (21%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
+L+KEK++ Q++ LE ++ + +++ L+ E +++ E ++LE
Sbjct: 29 KLKKEKQQRQFQLDSLEAALQKQKQKVENEKTEGANLKRENQRLMEICEHLE-------- 80
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK 525
++K E + KE ++N + QL++ ++I + + +L C+ E+++ ++A +S
Sbjct: 81 ----KTKQKISHELQVKESQVNFQ-EGQLNSCKKQIEKLEQELKRCKSELERSQQAAQSA 135
Query: 526 AESLD 530
SL+
Sbjct: 136 DVSLN 140
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 33.2 bits (76), Expect = 0.83
Identities = 30/163 (18%), Positives = 67/163 (41%), Gaps = 15/163 (9%)
Query: 404 ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVR 463
+ E K+ ++E L+E L + E S+ L ++I+++NE + + +
Sbjct: 258 MDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEEL 317
Query: 464 NDE----------LDNMNREKQKLE-----WKNKELELNMEINKQLSNNTEEINEYKTKL 508
+E L + KL+ + LEL + + +E K K
Sbjct: 318 EEEYKIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHRTPLIDEYRSLKEKN 377
Query: 509 ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
N E E ++ + ++ +++L ++L++ E+ + L + E
Sbjct: 378 RNKEDETQRQLDEIKKLRNKIEELESELQTKEQLYKQLLDEYE 420
>gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor. the 380
kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This family is the region between D4 and D5 and is the
two predicted alpha-helical coiled coil segments that
form the stalk supporting the ATP-sensitive microtubule
binding component.
Length = 344
Score = 32.7 bits (74), Expect = 0.89
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 16/104 (15%)
Query: 429 SAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNM 488
++Q + ++K E E+++ NE L IQV E + +++EK + + ++ +
Sbjct: 14 ASQVDDLKAKLAIQEVELKQKNEDADKL---IQVVGVETEKVSKEKAIADQEEVKVAVIN 70
Query: 489 EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKL 532
+ E K +CE+++ K + AL + E+L+ L
Sbjct: 71 K-------------EVTEKQKDCEEDLAKAEPALLAAQEALNTL 101
>gnl|CDD|219934 pfam08614, ATG16, Autophagy protein 16 (ATG16). Autophagy is a
ubiquitous intracellular degradation system for
eukaryotic cells. During autophagy, cytoplasmic
components are enclosed in autophagosomes and delivered
to lysosomes/vacuoles. ATG16 (also known as Apg16) has
been shown to be bind to Apg5 and is required for the
function of the Apg12p-Apg5p conjugate in the yeast
autophagy pathway.
Length = 194
Score = 32.1 bits (73), Expect = 0.92
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNRE 473
L+ ++E L ++L E S+ T LETEIR + E Q E + DEL ++N E
Sbjct: 100 LNDELEQLRREIQQLEKTIAELRSEITSLETEIRDLREELQEKEKDNETLQDELISLNIE 159
Query: 474 KQKLEWKNKELE 485
LE K ++L+
Sbjct: 160 LNALEEKLRKLQ 171
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 32.9 bits (76), Expect = 0.98
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK 273
Q L L + L +L + E E E + K I +++ E+ EL A K
Sbjct: 739 QELEDLLKEAAEILGVPPEQLPKTVERFFE---EWKEQKKEIEKLRKELAELLASELLSK 795
Query: 274 ALE-SEIQRYKDKLT-DLEYYKSRVEELRQDNRAINEIALERDAN 316
A E ++ +++ D + + EL ++ + +
Sbjct: 796 AEEVGGVKVVVEEVDADEDELRKIANELAKEGKVALVVLGNGGGQ 840
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 33.1 bits (75), Expect = 1.1
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 17/148 (11%)
Query: 428 LSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELN 487
L Q E E +E +I N++ N+E+ I + N+ E +K KN EL LN
Sbjct: 1017 LYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHT---SIYNIIDEIEKEIGKNIEL-LN 1072
Query: 488 MEINKQLSNNTEEINEYKTKLANCE-------------KEIKKCKEALESKAESLDKLTN 534
EI ++ N NE K KL + EI K K+ +++ + +D
Sbjct: 1073 KEILEEAEINITNFNEIKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIK 1132
Query: 535 KLESMEKEHVSLTKQIEDQENELKKYND 562
LE ++K+ + +I+ Q N+L+ D
Sbjct: 1133 ALEEIKKKSENYIDEIKAQINDLEDVAD 1160
Score = 31.6 bits (71), Expect = 2.6
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 15/179 (8%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
E+E K+ ++ ++ + + E LE EI+ + + Y ++ +I N
Sbjct: 541 EIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINK 600
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK 525
+ + + + KN+ ++ +++ K + NN I+E E K K+ + S
Sbjct: 601 LKLELKEKIKNISDKNEYIKKAIDLKKIIENNNAYIDELAKISPYQVPEHLKNKDKIYST 660
Query: 526 AES---------LDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQ 575
+S +D L N+L S+ KE+ D + K +DLK ++D+ K Q
Sbjct: 661 IKSELSKIYEDDIDALYNELSSIVKENAI------DNTEDKAKLDDLKSKIDKEYDKIQ 713
Score = 31.6 bits (71), Expect = 2.7
Identities = 91/428 (21%), Positives = 183/428 (42%), Gaps = 51/428 (11%)
Query: 500 EINEYKTKLANCEKEIKKC-KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
E+ E + EKEIK + LE E + KLE EK K I D+ +K
Sbjct: 566 ELEEENEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEK-----IKNISDKNEYIK 620
Query: 559 KYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENI 618
K DLK+ + E ++ Y + +S Q V E LK S K L+ + D + +
Sbjct: 621 KAIDLKKII-ENNNAYIDELAKISPYQ---VPEHLKNKDKIYSTIKSELSKIYEDDIDAL 676
Query: 619 LEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANS 678
+ L+++ K+ +++ D++ L++ K ++D +I ++ + L L+N
Sbjct: 677 YNE-------LSSIVKENAIDNTEDKAKLDDLKSKID--KEYDKIQNMETATVELHLSN- 726
Query: 679 QLILANHNELLQDQMTMTK-LHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQL 737
I NELL + + K +H ++N + ++++ K + L + N+ K++ ++
Sbjct: 727 --IENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNK- 783
Query: 738 KVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKAD--FRALQE---- 791
Y+S +E++ + ++ N++ E +K D + +K D F+ + E
Sbjct: 784 ---YKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFM 840
Query: 792 ------------EHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDR 839
+ N EK S E EL N+ A +L+ Y+ K D +
Sbjct: 841 KDDFLNKVDKFINFENNCKEKID---SEHEQFAELTNKIKA-EISDDKLNDYEKKFNDSK 896
Query: 840 RKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKL 899
+ E ++ +Y + ++L+ D Y + +N + + H ++ L+E + ++ +
Sbjct: 897 SLINEINKSIEEEYQNI--NTLKKVDEYIKICENTKESIEKFHNKQNILKEILNKNIDTI 954
Query: 900 DSCSSSSK 907
+ K
Sbjct: 955 KESNLIEK 962
Score = 31.2 bits (70), Expect = 3.9
Identities = 41/190 (21%), Positives = 93/190 (48%), Gaps = 18/190 (9%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEY-----ESKFTKLETE----IRKINESYQNL 456
E +K K + E E+ K+ ++ +Y ++KF K + + I++I ++++
Sbjct: 1501 EADKNAKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKF 1560
Query: 457 ELQIQVRNDELDNMNREKQKLE----WKNKELELNMEIN---KQLSNNTEEINEYKTKLA 509
L+ + ++ + +EK ++E +K + ++I + N +I++ K K+
Sbjct: 1561 ILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKIN 1620
Query: 510 NCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDE 569
+C KE + ++ + S S+D +L+ SL + +E +++ K D K+E+DE
Sbjct: 1621 DCLKETESIEKKISSF--SIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDE 1678
Query: 570 LDSKYQVDKN 579
LDS+ + +
Sbjct: 1679 LDSEIEKIEI 1688
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 32.3 bits (74), Expect = 1.1
Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 466 ELDNMNREKQKLEWK-NKELELNMEINKQLSNN---------TEEINEYKTKLANCEKEI 515
+L + E ++L+ K + LE + +L+ + E +N+ + +++ ++EI
Sbjct: 28 DLARLLLENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEI 87
Query: 516 KKCKEALESKAESLDKLTNKLESMEKEHV-SLTKQIEDQENELKKYNDLKREMDELDSKY 574
++ +E +E +L + + L S + Q+E ++E+K+ + +++ L S
Sbjct: 88 EQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKR---TRSKLNALHSLL 144
Query: 575 QV 576
Sbjct: 145 AE 146
>gnl|CDD|225814 COG3275, LytS, Putative regulator of cell autolysis [Signal
transduction mechanisms].
Length = 557
Score = 32.7 bits (75), Expect = 1.2
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 664 SSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNM---EYESVVKEIKVLKSTL 720
+ S T + +++ A+ NE+ + KL L + V+ IK+ ++
Sbjct: 266 KPIISSLTRKAIKTGEVVYADGNEVYECSHPTCKLGSALVIPLRGKGRVIGTIKLYEAKA 325
Query: 721 RDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANE 780
R + + N+ + E +QL +S + E E+ + E + ++A +++ F LF A
Sbjct: 326 RLISSINRELAEGIAQL-LSAQIEAGEAERQR-ELLKQAEIKALQAQVNPHF--LFNALN 381
Query: 781 KLKADFRALQEEHKGNHMEKRKLTLSLTE-LEGELANRDDAISALSVQLS 829
+ A R N + R+L L L+ L N I LS +L
Sbjct: 382 TISAVIRR-------NPDKARELILYLSTYFRYNLENNTQEIVTLSKELE 424
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 32.2 bits (74), Expect = 1.2
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 496 NNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQEN 555
N E ++E + KL EK++ K +E LE S K NKL +E++ SL K+I++ +
Sbjct: 239 NFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNS--KKKNKLAELEQQLASLEKRIDEAKE 296
Query: 556 ELKKYND 562
+ KY +
Sbjct: 297 LIAKYGN 303
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 32.4 bits (74), Expect = 1.3
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 497 NTEEINEYKTKL-ANCEKEIKKCKEALESKAE------SLDKLTNKLESMEKEHVSLTKQ 549
N +++ EYK +L A +K+IK E + K E K++S + + + KQ
Sbjct: 189 NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ 248
Query: 550 IEDQENELKKY--NDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLK 594
++ ELKK NDLKR L++KY + L DL +++
Sbjct: 249 LKADLAELKKAPQNDLKR----LENKYAIKSGDLKNFAVDLFGPEIR 291
>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic
spindle partitioning in anaphase B [Cell division and
chromosome partitioning].
Length = 669
Score = 32.3 bits (73), Expect = 1.3
Identities = 35/158 (22%), Positives = 64/158 (40%), Gaps = 15/158 (9%)
Query: 385 LLSTIESLHEN--AFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTK- 441
IESL EN F E + + K+ SL + L E RL + E+ T+
Sbjct: 486 FFQGIESLLENITIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLTEE 545
Query: 442 --------LETEIRKINESYQNLELQIQVRN----DELDNMNREKQKLEWKNKELELNME 489
+ E + + E+ + L++++ +N +E N+ + +E K +++ N
Sbjct: 546 TKIKIIIGRDLERKTLEENIKTLKVELNNKNNKLKEENFNLVNRLKNMELKLYQIKDNNT 605
Query: 490 INKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAE 527
+NK + EI E + + KE K+ E
Sbjct: 606 LNKIYLDLVSEIMELRETIRRQIKEQKRVSIDFSWLDE 643
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe
Cdc15, and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Schizosaccharomyces pombe Cdc15 and Imp2, and similar
proteins. These proteins contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. S. pombe Cdc15 and
Imp2 play both distinct and overlapping roles in the
maintenance and strengthening of the contractile ring at
the division site, which is required in cell division.
Cdc15 is a component of the actomyosin ring and is
required in normal cytokinesis. Imp2 colocalizes with
the medial ring during septation and is required for
normal septation. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 236
Score = 31.9 bits (73), Expect = 1.4
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 498 TEEINEYKTKLANCEKEIKKCKEALESKA----------ESLDKLTNKLESMEKEHVSLT 547
EE+ + + A+ E+E K E L K+ SLD L + ESM K H+
Sbjct: 21 LEELRSFYKERASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFA 80
Query: 548 KQIEDQ-ENELKKYNDLKRE 566
KQI E +L + +
Sbjct: 81 KQIRQDLEEKLAAFASSYTQ 100
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 32.4 bits (74), Expect = 1.4
Identities = 52/268 (19%), Positives = 107/268 (39%), Gaps = 36/268 (13%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
+ ++ EL + L Q+E+LEE + E E+ LE E ++++
Sbjct: 174 RQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPG----EDEA----LEAEQQRLSNLE 225
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKE--LELNMEINKQLSNNTEEINEYKTKLANC 511
+ EL +++ ++ L E L L I+ L E++ T++
Sbjct: 226 KLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEA 285
Query: 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE-----DQENELKKYNDLKRE 566
+E++ + LE E L+++ +L + K+++ E L+ +K E
Sbjct: 286 TRELQNYLDELEFDPERLNEIEERL--------AQIKRLKRKYGASVEEVLEYAEKIKEE 337
Query: 567 MDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLG--LAMDDQTDAENILEKILS 624
+D+LD + +L L+ ++ L+ LDK L++ + AE + +++
Sbjct: 338 LDQLDDSDE----SLEALEEEV-------DKLEEELDKAAVALSLIRRKAAERLAKRVEQ 386
Query: 625 SPEILNAVKKKLGVEHFNDESSLNNAKL 652
+ L K + VE S A+
Sbjct: 387 ELKALAMEKAEFTVEIKTSLPSGAKARA 414
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 32.3 bits (74), Expect = 1.5
Identities = 22/96 (22%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 500 EINEYKTKLANCEKEIKKCKEALESK--AESLDKLTNKLESMEKEHVSLTKQIEDQENEL 557
E NE+K + E++I + K ++ + + L ++L+ ++VS+ + + + L
Sbjct: 404 ENNEFKKVNRSVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNEKGLKKAL 463
Query: 558 KKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKL 593
++ N+LK ++ +L VD N L+N ++ +L
Sbjct: 464 EEINELKEKLKDLKVNGIVDFNKALELENMILVAEL 499
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome partitioning].
Length = 1480
Score = 32.6 bits (74), Expect = 1.5
Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 27/267 (10%)
Query: 289 LEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENT-NLSLLSKSNQCVDNQSVSS 347
+ K V L NR I ++ L D E L +EE L ++ + + +
Sbjct: 866 FDQAKEGVTAL---NRLIPQLNLLAD---ESLADRVEEIRERLDEAQEAARFIQQHGNTL 919
Query: 348 VDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL---HENAFYESGERI 404
L +AS D EQL ++ + E + ++ +S E +
Sbjct: 920 SKLEPIASVLQSDPEQFEQLKEDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEML 979
Query: 405 LELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRN 464
E +KL ++E E + R Q +++++ ++ + + SY + +
Sbjct: 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQ 1039
Query: 465 DELDNMN-REKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALE 523
EL ++ R E + + E++ QLS N N+ + +L CE E
Sbjct: 1040 QELQDIGVRADSGAEERARIRR--DELHAQLSTNRSRRNQLEKQLTFCEAE--------- 1088
Query: 524 SKAESLDKLTNKLESMEKEHVSLTKQI 550
+D LT KL +E+++ + +Q+
Sbjct: 1089 -----MDNLTRKLRKLERDYFEMREQV 1110
Score = 31.4 bits (71), Expect = 2.9
Identities = 60/327 (18%), Positives = 136/327 (41%), Gaps = 24/327 (7%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
+L +L +L +Q +EE +E E+ E + ++ +K+++ A +AL+ +
Sbjct: 356 DLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQL------ADYQQALDVQ 409
Query: 279 IQR---YKDKLTDLEYYKS--RVEELRQDNRAINEIALERDANAEKL-QQLIEENTNLSL 332
R Y+ + LE K + +L D+ E A E+ ++L+ +S+
Sbjct: 410 QTRAIQYQQAIAALERAKELCHLPDLTADS--AEEWLETFQAKEEEATEKLLSLEQKMSM 467
Query: 333 LSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRL-LSTIES 391
++ + V + + + E L + L +++ R+ LS +E
Sbjct: 468 AQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQ 527
Query: 392 LHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINE 451
+S ER+L +++ +L E+LE + L A + + + +
Sbjct: 528 RLRQQ--QSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQ 585
Query: 452 SYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANC 511
+ L+ +IQ M R L +N +L+ + ++ + +++++ EY +L
Sbjct: 586 EQEQLQSRIQ------SLMQRAPVWLAAQNALEQLSEQSGEEFT-DSQDVTEYMQQLLER 638
Query: 512 EKEIKKCKEALESKAESLDKLTNKLES 538
E+E ++ L ++ +LD+ +L
Sbjct: 639 EREATVERDELGARKNALDEEIERLSQ 665
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 32.1 bits (73), Expect = 1.5
Identities = 67/368 (18%), Positives = 126/368 (34%), Gaps = 55/368 (14%)
Query: 218 VELADLKSKLRKQRLELEEKSEHLTES-RDELEHHKALINRMKAEM--------LELRAE 268
+ LAD+K +L+E+S ++ ++ +A I R+ AE L E
Sbjct: 4 LNLADIKIHYSSFEKDLKEESSTKKQAILKDIAVLRAEIKRLSAENGIEQDISNSLLHKE 63
Query: 269 ARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENT 328
+ + +QR K + K R + + A E +L QL E
Sbjct: 64 PLQLLSEKDILQRPKSFPLGVWLLKLRDQLESLRKQKAERRA-EIKELLHQLLQLCNELG 122
Query: 329 NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELEN---KRL 385
L + + + L +L E+L + K RLE + + +
Sbjct: 123 EPPL------SLLRKDADPLSLPNLEEL----EHFRERLGELREEKVRRLEEVDSLKQSI 172
Query: 386 LSTIESL------------------HENAFYESGERILELEKEKKKLSLQVEDLEETKRR 427
S L N + E I +L+K + L+ Q + +
Sbjct: 173 KSLCSLLGTPPARTDFEQDVLSYGEIPNDHCVTRETIDKLDKMLENLAAQKKQRADKIDD 232
Query: 428 LSAQCTEYESKFTKLETEI-RKINESYQNLELQIQVRNDELDN---MNREKQKLEWKNKE 483
L Q E ++ + E R + E+ + I+ +E++ + ++ K ++
Sbjct: 233 LREQIQELWNRLQISDEEQKRFVREATILSQESIKRLEEEVERLEALKKQNLKKFIEDLR 292
Query: 484 LELNMEINKQLSNNTEEINEYKTK---------LANCEKEIKKCKEALESKAESLDKLTN 534
+E+ E+ L + E+ + L E EIK+ KE S E L+ +
Sbjct: 293 IEIQ-ELWDLLFYSEEQRKSFTPYYEELYTEQLLEQHENEIKRLKEEYSSNKEILELIEK 351
Query: 535 KLESMEKE 542
E+
Sbjct: 352 WESLWERM 359
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 32.4 bits (74), Expect = 1.6
Identities = 53/339 (15%), Positives = 107/339 (31%), Gaps = 30/339 (8%)
Query: 226 KLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDK 285
L K E EE+ +L + +LE K + R++ + L KALE ++ +
Sbjct: 178 DLVKALDEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAER----KALEQQLAALGEV 233
Query: 286 LTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSV 345
+ R EE R + RA + E+L+ L E +SL ++ + Q+
Sbjct: 234 IDLPPDAVERYEEARAELRAAR---RNLELLTERLEALQAELDEISL----DEELLAQAA 286
Query: 346 SSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHEN---AFYESGE 402
+ L+ +A+ E E +L E
Sbjct: 287 AIEALHQQ-----------RGEYRNAEQDLPDREGEIANAREAAAALLAQIGPDADEEAV 335
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
L K+ V +LE+ K L + E E++++ L
Sbjct: 336 ESLRPSLAAKE---TVTELEKRKEALDQALKSARDALEERERELKQVRAQLAALPTVTVP 392
Query: 463 RNDE--LDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
L + R + ++L+ + ++ L E
Sbjct: 393 EPLRAALADALRAGDIDAALAALEQEVAVAKRELAQALSRLGLWRGDLEELVALPVPSAE 452
Query: 521 ALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
+++ + +++ + L + +E E +L+
Sbjct: 453 QVQAFLKEAEEIMQAKRQKRDRLLELEEDLETLELQLRH 491
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 32.0 bits (72), Expect = 1.7
Identities = 43/209 (20%), Positives = 95/209 (45%), Gaps = 4/209 (1%)
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
EKK+ E+L+ ++ L E + LE ++ I S ++ +++ EL+
Sbjct: 423 EKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK 482
Query: 470 MNREKQKLEWKNKELEL-NMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAES 528
+ +L +L L N E+ ++ S+ T E+ +++ + NC+K+ ++ + +E+ E
Sbjct: 483 EKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEK 542
Query: 529 LDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588
L ++LES+ +E ++ ++ + +L K + R ++ K + L N+L
Sbjct: 543 EMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNL 599
Query: 589 VNEKLKTTHLKNSLDKLGLAMDDQTDAEN 617
+ L + A+ + AEN
Sbjct: 600 KKQIENKNKNIEELHQENKALKKKGSAEN 628
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A. Members of this
family are the phage shock protein PspA, from the phage
shock operon. This is a narrower family than the set of
PspA and its homologs, sometimes several in a genome, as
described by pfam04012. PspA appears to maintain the
protonmotive force under stress conditions that include
overexpression of certain phage secretins, heat shock,
ethanol, and protein export defects [Cellular processes,
Adaptations to atypical conditions].
Length = 219
Score = 31.1 bits (71), Expect = 1.9
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 11/111 (9%)
Query: 798 MEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELL 857
+EK+K LE ELA ++ ++ L ++K Q KL + R + LA H+
Sbjct: 92 IEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR-----QKALAIRHQAA 146
Query: 858 THSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKK 908
+ L+ + S + + + E+ E ++ E + +S K
Sbjct: 147 SSRLDVRRQLD------SGRSDEAMARFEQYERRVDELEAQAESYDLGRKP 191
>gnl|CDD|218342 pfam04948, Pox_A51, Poxvirus A51 protein.
Length = 334
Score = 31.6 bits (72), Expect = 1.9
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 2/92 (2%)
Query: 843 MEHVTNLLAQYH--ELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLD 900
M+ + ++L + D+ E KN K +N+ + ++ K+D
Sbjct: 1 MDVIVGNTFSLKDWDILEYFKNAFDNDLPECKNVCSKFDNVIISSNTKSKTLIADTPKID 60
Query: 901 SCSSSSKKKSFGANLVRKVRKAGSELINKSRK 932
S K NL+R R ++ +
Sbjct: 61 KSISEVYKTDKKKNLIRISRFCKLIKLDDKKD 92
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 31.8 bits (72), Expect = 1.9
Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 401 GERILELEKEKKKLSLQVEDLE-ETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQ 459
++ILE +KE + S E E + + +L I+ + +S L
Sbjct: 365 VQKILETKKEYETGSGSASPGETEASSAAKKERDSSAREIEQLRESIQTLTKSANPLGKL 424
Query: 460 IQVRNDELDNMNREKQ--KLEWKNKELELNME----------INKQLSNNTEEINEYKTK 507
+ +++D+M RE + + E++ + L E + QL+ + I + ++K
Sbjct: 425 LDFIQEDIDSMQRELEMWRSEYRQQAQALQQERRATEEALEPLKDQLAELEQAIKDQRSK 484
Query: 508 LANCEKEIKKCKEALE 523
++N I K + ++
Sbjct: 485 ISNVRANILKNEAKIQ 500
>gnl|CDD|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1025
Score = 32.0 bits (73), Expect = 1.9
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESL-DKLTNKLESMEKEHVSLTKQI 550
K++ + INE + LA+ + AL K L ++ LE +E++ L K++
Sbjct: 18 KKIQPIIDRINEIQASLASLSDD------ALREKGMELKSRVRGALEPIEQKKKDLEKKL 71
Query: 551 EDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588
++ + L++ + E+D L +Y ++ T + L+ L
Sbjct: 72 DNPDISLEEAESINEELDTLAKEY--EEATAAALEEIL 107
>gnl|CDD|131269 TIGR02214, spoVD_pbp, stage V sporulation protein D. This model
describes the spoVD subfamily of homologs of the cell
division protein FtsI, a penicillin binding protein.
This subfamily is restricted to Bacillus subtilis and
related Gram-positive species with known or suspected
endospore formation capability. In these species, the
functional equivalent of FtsI is desginated PBP-2B, a
paralog of spoVD [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan,
Cellular processes, Sporulation and germination].
Length = 636
Score = 31.7 bits (72), Expect = 2.0
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 342 NQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESG 401
+ SV VDL+ P + + + A A LE++ +++ I +
Sbjct: 63 SVSVDRVDLD----PATIRKNKEPKQREIANELARVLEMDKEKVFKRITKKNSPFVSAKL 118
Query: 402 ERILELEKEKKKLSLQVEDL---EETKR 426
R +E +K +K +L++ + ++KR
Sbjct: 119 GRKIEKDKAEKVRNLKLNGVSVSPDSKR 146
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 31.7 bits (73), Expect = 2.1
Identities = 81/397 (20%), Positives = 161/397 (40%), Gaps = 62/397 (15%)
Query: 478 EWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLE 537
EW+ K E+ + E E K +K K + LD + +E
Sbjct: 68 EWRQKWDEIVTNSLPDIEEQLFEAEELNDKF-----RFRKAKHEINEIESLLDLIEEDIE 122
Query: 538 SMEKEHVSLTKQIEDQENE----LKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVN--E 591
+ +E L + E E Y +L++ + + L L+ L N E
Sbjct: 123 QILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGP---ALDELEKQLENLEE 179
Query: 592 KLKT-THLKNSLD-----KLGLAMDDQTDA-ENILEKILSSPEILNAVKKKLGVEHFNDE 644
+ L S D ++ ++++ A E I+E+I PE+L ++ +L + +
Sbjct: 180 EFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEI---PELLKELQTEL-PDQLQEL 235
Query: 645 SS-----------LNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQM 693
+ L++ +E +++ + QI + L L NE +Q+++
Sbjct: 236 KAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDE----AEEKNEEIQERI 291
Query: 694 TMTKLHEQLNMEYES---VVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME- 749
+L++ L E ++ V K L L K +NK +KE+ ++K SY ++E+E
Sbjct: 292 D--QLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELES 349
Query: 750 QLKFESHSLSNLRAEHSKLKDDF---RILFTA-NEKLKADFRALQEEHKGNHMEKRKLTL 805
+ E L +L ++ ++ + I ++ E+L+ + L+E K + ++
Sbjct: 350 VRQLEKQ-LESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK-EQEKLSEMLQ 407
Query: 806 SLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKL 842
L + EL R+ +L +Y+NKL + +R L
Sbjct: 408 GLR--KDELEARE--------KLERYRNKLHEIKRYL 434
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 30.3 bits (69), Expect = 2.1
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
++ S+ E+ K + E++I+K +E LE +AE ++ K E +H ++++
Sbjct: 3 EEKSSLQAELKRLLEKKEDAEEKIQKLQEDLEEQAEIANEAQQKYERELVKHAEDIEELQ 62
Query: 552 DQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEK 592
+L N+LK+E+ +L ++ + + LS + +K
Sbjct: 63 ALRKQL---NELKKEIAQLKAEAESAQAELSEAEESWEEQK 100
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 31.6 bits (72), Expect = 2.1
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK 525
ELD++ +E KL + +L++ E +L T+E+ + T+ E E+++ K AL++K
Sbjct: 48 ELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEK---EAEVQEAKAALDAK 104
Query: 526 AESLDKL 532
+++ L
Sbjct: 105 LKTIGNL 111
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 31.5 bits (72), Expect = 2.2
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 719 TLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTA 778
TLR + E K ++++ ++L E+L+AE E+L+ S+ D +I
Sbjct: 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSI------------DQQI---- 103
Query: 779 NEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELAN 816
+ ++++ + L +E + E+++L + +L+ LA
Sbjct: 104 QQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141
>gnl|CDD|165250 PHA02940, PHA02940, hypothetical protein; Provisional.
Length = 315
Score = 31.5 bits (71), Expect = 2.3
Identities = 37/207 (17%), Positives = 79/207 (38%), Gaps = 15/207 (7%)
Query: 700 EQLNMEYESVVKEIKVLKSTLRDVKNE----NKTVKEQYSQLKVSYESLQAEMEQLKFES 755
E L ++Y+ + L++ L ++ E K ++++Y L K +S
Sbjct: 24 EDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKS 83
Query: 756 HSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKG-NHMEKRKLTLSLTELEGEL 814
LS+ + K+ + +F +L A+ A+ + K + TL+
Sbjct: 84 KLLSD-----AYNKNAIKSMFDNAIELYANLAAINALLRLIRSFIKPEPTLTTPLFIDFT 138
Query: 815 ANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLE---DKDHYHEEE 871
D + L+ + + K DDRR + ++ L+ + + + D EE
Sbjct: 139 QKAKDTVILLAGRYVQDVKK--DDRRTIANKLSKELSWTIDYQENEPDLESDFKEIEEEL 196
Query: 872 KNFSDKLNNLHRQKEKLEEKIMEHYRK 898
+ D ++ ++ + + EHY K
Sbjct: 197 EEKDDLSRGTYKVLKRALDLMKEHYWK 223
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 31.4 bits (71), Expect = 2.3
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
E I E +KE +L LQ + L + + ++ KLE R + E Q L++Q
Sbjct: 92 ESIEERQKESDQLKLQNQKLVNQLGHARGVFIKTKGRYQKLEELSRHLKEENQCLQIQ-- 149
Query: 462 VRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYK 505
LD + +E + +N+ ELN E+ + L+ E +EY+
Sbjct: 150 -----LDALVQECNEKIEENQ--ELNRELAETLAYQQELNDEYQ 186
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 31.2 bits (71), Expect = 2.6
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
ELE ++K+L ++E+L+E + L + +E K +L ++R++ E + Q +
Sbjct: 10 ELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELRE-------KAQELRE 62
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLS--NNTEEINEYKTKLANCEKEIKKCKEALE 523
E D +N E Q+L K K E+N ++ + +E K +++ E LE
Sbjct: 63 ERDEINEEVQEL--KEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLE 120
Query: 524 SKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSK 573
K ++ + + ++ L K++ED + L++ LK E+D
Sbjct: 121 KKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDEL 170
Score = 29.6 bits (67), Expect = 8.1
Identities = 37/200 (18%), Positives = 92/200 (46%), Gaps = 7/200 (3%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK---FTKLETEIRKINESYQNLEL 458
E + EL++++ +++ ++++L + R L + E+ LE EI ++ + Q L
Sbjct: 69 EEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVL 128
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELN---MEINKQLSNNTEEINEYKTKLANCEKEI 515
+ + + + +++LE K LE N E+ ++ ++ E K+ E
Sbjct: 129 TPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188
Query: 516 KKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK-KYNDLKREMDELDSKY 574
++ E + E D+L + + + +E V L+K+I++ E + N+L+ ++ +
Sbjct: 189 QEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248
Query: 575 QVDKNTLSVLQNDLVNEKLK 594
+K + + + E+ +
Sbjct: 249 AKEKAAKRREKREELKERAE 268
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 31.2 bits (71), Expect = 2.6
Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 35/205 (17%)
Query: 358 SGDNSLS-EQLTSSAQAKALRLELENKRLLS--TIESLHENAFYESGERILELEKEKKKL 414
SG N L + L + Q +LR+ E + S T+ + E ER+ EL K+ ++L
Sbjct: 24 SGVNELVLKNLPLTLQDDSLRVSGEGLAVASLVTVSTWRERTSRPDPERLAELRKQIREL 83
Query: 415 SLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREK 474
++ DLE+ L A E L I+ D+ R +
Sbjct: 84 EAELRDLEDRGDALKALAKFLEDIREGLTEPIK--------------------DSAKRNE 123
Query: 475 QKL-EWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLT 533
L EW N EI T+ E+ I++ ++ L L+ L
Sbjct: 124 PDLKEWFQ-----------AFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172
Query: 534 NKLESMEKEHVSLTKQIEDQENELK 558
+ + ED E EL
Sbjct: 173 TGKSQRSHTVLVRLEAPEDAEAELN 197
Score = 30.5 bits (69), Expect = 5.5
Identities = 16/100 (16%), Positives = 39/100 (39%), Gaps = 2/100 (2%)
Query: 460 IQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCK 519
+ ++ + E + LE + L+ + + + K E ++K+
Sbjct: 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT--EPIKDSAKRNEPDLKEWF 130
Query: 520 EALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
+A + +++L + E+ L KQ+ + +NEL
Sbjct: 131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 31.5 bits (71), Expect = 2.8
Identities = 72/343 (20%), Positives = 131/343 (38%), Gaps = 22/343 (6%)
Query: 213 CQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSG 272
C A EL+ K++L + ELE + ++ R L+ K + R + E L+ E
Sbjct: 289 CDRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEV--- 345
Query: 273 KALESEIQRYKDKLTD-LEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLS 331
AL E++R + LT ++ EE I ++ + KL+ L ++ NL
Sbjct: 346 DALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQ 405
Query: 332 LLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIES 391
+ + + + D + L +A A E E IE
Sbjct: 406 ------ETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALA---EKER-----IIER 451
Query: 392 LHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINE 451
L E + E E KK+ EDL+E + L + +E E + L+ E+ K+
Sbjct: 452 LKEQRDRDERYEQEEFETYKKEF----EDLKEEVQNLQLKLSERELQLELLKEEVSKLAS 507
Query: 452 SYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANC 511
+ ++ + EL+ + + +KLE + K L N E + S + + A
Sbjct: 508 NQLKQRSDLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGA 567
Query: 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQE 554
E+ + + LE + D + + KE + + Q+
Sbjct: 568 RNEVDRLLDRLEKAEQERDDTEMEAGRLAKELEKAQRHLTKQQ 610
Score = 31.1 bits (70), Expect = 3.1
Identities = 22/157 (14%), Positives = 61/157 (38%), Gaps = 3/157 (1%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
+ K + ++ +E K + + + ++ K E ++R + + +NL+ +
Sbjct: 351 ELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRR 410
Query: 463 RNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEAL 522
+ L + L+ ++ K L+ I K + E+ +E
Sbjct: 411 KERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERY---EQEEF 467
Query: 523 ESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
E+ + + L ++++++ + Q+E + E+ K
Sbjct: 468 ETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSK 504
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 31.2 bits (71), Expect = 2.8
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 658 TSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLK 717
+ SQ+ SQ + + Q ++ N + D + T+L E LN S E
Sbjct: 220 SELSQLLGPPSQDSEEISSRLQALVVNSS---SDPVAFTRLQELLNEGDTSSEAEANPFP 276
Query: 718 STLRDVKNEN-------KTVKEQYSQLKVSYESLQ 745
S RD+ + T+ ++Y VSYE
Sbjct: 277 SRCRDILLSSIYAIHRISTLLQEYIISPVSYEEDD 311
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 31.0 bits (71), Expect = 2.8
Identities = 53/246 (21%), Positives = 101/246 (41%), Gaps = 41/246 (16%)
Query: 365 EQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEET 424
EQ +AK L + S + SL+E E +++ EL E+ +L L++++L
Sbjct: 24 EQQNKELEAKIEELRQKKSAEPSRLYSLYEQEIRELRKQLDELTNERARLQLEIDNLRLA 83
Query: 425 KRRLSAQCTEYESKFTKLETEIRKINESYQN-------LELQIQVRNDELDNM--NREKQ 475
+ + + E +I + + LE++I+ +EL + N E++
Sbjct: 84 AEDFREKYEDELNLRQSAENDIVGLRKDLDEATLARVDLEMKIESLQEELAFLKKNHEEE 143
Query: 476 KLE-------------WKNKELELNMEIN-------KQLSNNTEEINE-YKTKLANCEKE 514
E ++L+L + + N +E E YK+KL ++
Sbjct: 144 VRELQSQIQGQVNVEMDAARKLDLTKALAEIRAQYEELAEKNRQEAEEWYKSKLEELQQA 203
Query: 515 IKKCKEALESKAE-------SLDKLTNKLESMEKEHVSLTKQIEDQE----NELKKYNDL 563
+ +AL S E + L +L+S++K+ SL +Q+ + E EL Y D
Sbjct: 204 AARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELELADYQDT 263
Query: 564 KREMDE 569
E++E
Sbjct: 264 ISELEE 269
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.1 bits (71), Expect = 2.8
Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 12/88 (13%)
Query: 249 EHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINE 308
E + L + E+ E AE E+E + + K E L ++ +
Sbjct: 65 EIEEELREEYEEELKEYEAEKE---IWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEA 121
Query: 309 IALER---------DANAEKLQQLIEEN 327
E DA E L +L+ EN
Sbjct: 122 EEPEPPLRPRLIVNDATPEALLELLAEN 149
>gnl|CDD|189016 cd09609, M3B_PepF_4, Peptidase family M3B Oligopeptidase F (PepF).
Peptidase family M3B Oligopeptidase F (PepF;
Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and
includes oligoendopeptidase F from Lactococcus lactis.
This enzyme hydrolyzes peptides containing between 7 and
17 amino acids with fairly broad specificity. The PepF
gene is duplicated in L. lactis on the plasmid that
bears it, while a shortened second copy is found in
Bacillus subtilis. Most bacterial PepFs are cytoplasmic
endopeptidases; however, the PepF Bacillus
amyloliquefaciens oligopeptidase is a secreted protein
and may facilitate the process of sporulation.
Specifically, the yjbG gene encoding the homolog of the
PepF1 and PepF2 oligoendopeptidases of Lactococcus
lactis has been identified in Bacillus subtilis as an
inhibitor of sporulation initiation when over expressed
from a multicopy plasmid.
Length = 586
Score = 31.4 bits (72), Expect = 2.9
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 29/143 (20%)
Query: 419 EDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND----------ELD 468
L++ K +Y+ K T ET I + + E +I D
Sbjct: 24 AALKKLKELAKDFKKKYKGKLTDAET----ILSALDDYE-EILELISRLSHYASLPQSTD 78
Query: 469 NMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAES 528
+ E Q K L +IN +LS E+ LA EK +++ E L A
Sbjct: 79 GTDPENQARAAKFDSLA--AKINAKLSFFESEL------LALDEKILEEVIEELPEYAAY 130
Query: 529 LDKLTNKLESMEKEHVSLTKQIE 551
L+ L L +K H L+ ++E
Sbjct: 131 LEDL---LR--KKPHT-LSPEVE 147
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 30.1 bits (68), Expect = 3.1
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Query: 513 KEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
K K K+ + +LDK N +E +++E + K+ E LKK +ELD
Sbjct: 34 KFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKKKLKF----EELDD 88
Query: 573 KYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAV 632
+N + +Q+ L + K + L + ++T S E+ A
Sbjct: 89 LKITAENEIKSIQDLLQDYKKSLEEDT-IPNHLNEEVSNETKLTQESSSDESPKEVKLAT 147
Query: 633 KKK 635
K K
Sbjct: 148 KNK 150
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.9 bits (68), Expect = 3.3
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHH 251
K++ R + ELE K++ D H
Sbjct: 78 RYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 31.2 bits (71), Expect = 3.4
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 403 RILELEKEKKKLSLQVEDL-----EETKRR---LSAQCTEYESKFTKLETEIRKINESYQ 454
R E+E++ +KL +++ L + + S + + E + LE EI+++ E+ +
Sbjct: 32 RCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLE 91
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKE 483
+LE +I +E N+ E++ +N E
Sbjct: 92 SLEKEINEL-EEWLNVLDEEKSFLDENLE 119
Score = 31.2 bits (71), Expect = 3.4
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 444 TEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK-NKELELNMEINKQLS-NNTEEI 501
+IR +NE + + D + R+ +KLE K K + + ++E
Sbjct: 10 VQIRDLNEDVSAFQRKFVNEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEF 69
Query: 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQEN 555
+ + ++ + E EIK+ +E LES + +++L L +++E L + +E+
Sbjct: 70 LDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSE 123
Score = 30.8 bits (70), Expect = 4.5
Identities = 52/292 (17%), Positives = 102/292 (34%), Gaps = 42/292 (14%)
Query: 372 QAKALR-LELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSA 430
+ LR LE + K+L ++ + L+LE+E L +++++EE L
Sbjct: 36 VERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEK 95
Query: 431 QCTEYESKFTKLETEIRKINESYQNLE----LQIQVRNDELDNMNREKQKLEWKNKELEL 486
+ E E L+ E ++E+ + L L I + + N+E
Sbjct: 96 EINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLGFVAGVINREKLE 155
Query: 487 NMEINKQLSNNTEEINEYKTKLANCEKEIKKC--------KEALESKAESLDKL------ 532
E ++L ++ ++ KK KE L+ + LD
Sbjct: 156 AFE--RELWRACRGYIRQ-AEIEEPLEDPKKTVFIIFFVGKEDLDKVKKILDSFGFELYD 212
Query: 533 --------TNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVL 584
+ + + K L + +E E+ L+K + DEL + + +V
Sbjct: 213 VPETEGERSELISKVNKRIEELQRVLEQTESHLEKVLV--KIADELLAWDEQVSKEKAV- 269
Query: 585 QNDLVNEKLKTTHL--------KNSLDKLGLAMDDQTDAENILEKILSSPEI 628
+ +N T L+KL A+++ T+ + I + E
Sbjct: 270 -YETLNLFNYDTKTLIAEGWVPAKDLEKLKAALENATEGSGSVPSIENDIET 320
>gnl|CDD|204467 pfam10376, Mei5, Double-strand recombination repair protein. Mei5
is one of a pair of meiosis-specific proteins which
facilitate the loading of Dmc1 on to Rad51 on DNA at
double-strand breaks during recombination. Recombination
is carried out by a large protein complex based around
the two RecA homologues, Rad51 and Dmc1. This complex
may play both a catalytic and a structural role in the
interaction between homologous chromosomes during
meiosis. Mei5 is seen to contain a coiled-coli region.
Length = 212
Score = 30.6 bits (69), Expect = 3.5
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 379 ELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLS-AQCTEYES 437
+ E++ +L++ + ELE EK+KL QV++ + RRL + E ++
Sbjct: 99 QSESRSILNSSSPKINRMGGYKDFKRKELEAEKRKLEYQVDEESDDLRRLKLVEKYEIKN 158
Query: 438 KFTKLETEIRKINESYQNL--ELQIQVRNDELDNM 470
++L+ I+K ++ Q +LQ ++ +E +
Sbjct: 159 DLSELQELIKKWEKAKQRELEKLQKELAEEEGEEF 193
>gnl|CDD|218647 pfam05591, DUF770, Protein of unknown function (DUF770). This
family consists of several proteins of unknown function
from various bacterial species.
Length = 159
Score = 29.8 bits (68), Expect = 3.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 609 MDDQTDAENILEKILSSPEILNAVKKKLGVE 639
+D+ +LE++L P +L + +LG+
Sbjct: 129 LDNNPAFRKLLEELLKDPALLEKLLAELGLL 159
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 30.9 bits (70), Expect = 3.8
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 82 IKSLYEEELCQIVL---VLPDVLIIGREPESKQG--LENMKLLLLLLLGCAV---QCPNK 133
+ +E+ L +I+L + VL E E +E +LL+L+ V Q N
Sbjct: 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNA 60
Query: 134 ETFIERIKELPVESQHALV--DCIKQVTENQDIV----LSLDNCEGVPTEVMVSNVKAL 186
E IE +KE ES+HA V D V + +D+V + L + VP ++ V ++K L
Sbjct: 61 EKAIEALKEY--ESEHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTL 117
>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional.
Length = 336
Score = 30.4 bits (69), Expect = 3.9
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 460 IQVRNDELDNMNREK------QKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEK 513
Q + LD++ EK ++L+ E ELN E++K+ INE K + N E+
Sbjct: 83 KQQKEQILDSLITEKVLLQKAKELKLIPSEEELNKEVDKK-------INEIKKQFNNDEE 135
Query: 514 EIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSK 573
+ ++ +A E+ + +EK + K ++ + + +KY +E SK
Sbjct: 136 QFEEALKATGFTEETFKEYLKNQIIIEKVINEVVKDVKVTDKDAQKY------YNENKSK 189
Query: 574 YQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
+ NT+ L + LV + + +K LDK
Sbjct: 190 FTEKPNTMH-LAHILVKTEDEAKKVKKRLDK 219
>gnl|CDD|235558 PRK05683, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 676
Score = 30.9 bits (70), Expect = 4.0
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 487 NMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEA-------LESKAESLDKLTNKL 536
N IN QLS T+++N T +A+ K+I + + L+++ E++ +L N+L
Sbjct: 154 NSNINSQLSAMTDQVNNLTTSIASYNKQIAQASASGATPNDLLDARDEAVRQL-NEL 209
>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869). This
bacterial family of proteins has no known function.
Length = 131
Score = 29.5 bits (67), Expect = 4.1
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
E+ K LQ E L+E +L + + E + K EIRK + Q ++Q QV
Sbjct: 15 ERWKEELQAE-LQEQLTQLEQELQQLEFQGQKAIKEIRKQSAQ-QIEQIQQQV------- 65
Query: 470 MNREKQKLEWKNKELELNMEINKQLSNNTE 499
+E+ K + +L +E ++L +E
Sbjct: 66 -EQERAKRLEQKNQLLFQIEQVQELPLGSE 94
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 29.9 bits (68), Expect = 4.2
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
+ L+ + +E ++L+ + EL+ +E K+ TEE E +L EKE+KK
Sbjct: 63 ALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKL 122
Query: 519 KEALESKA----ESLDKLTNKLESMEKEHVSLTKQIEDQENEL-KKYNDLKREMDE 569
K LE E ++KL + + ++ T I ++ L KK+ + ++ +
Sbjct: 123 KAELEKYEKNDPERIEKLKEETKVAKEAANRWTDNIFSLKSYLSKKFGLDEAQLRK 178
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 30.6 bits (69), Expect = 4.6
Identities = 104/460 (22%), Positives = 172/460 (37%), Gaps = 76/460 (16%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
RILEL+ E K+L ++ +++ RLS+ L E+++ NE LELQ
Sbjct: 35 RILELQAELKQLRAELSNVQAENERLSS-----------LSQELKEENE---MLELQRGR 80
Query: 463 RNDELDNMNREKQKLEWKNKEL-ELNMEINKQLSNNTEEINEY---KTKLANCEKEIKKC 518
DE+ + +L EL E N+ + KQ+S + E+ K ++ E+E
Sbjct: 81 LRDEIKEYKFREARLLQDYSELEEENISLQKQVSVLRQSQVEFEGLKHEIRRLEEET--- 137
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDK 578
E L S+ E +L E +E + K +Q+N L+K +++ S
Sbjct: 138 -ELLNSQLEEAARLKEIAEKQLEEALETLKTEREQKNALRKELSHHLNLEDFYS------ 190
Query: 579 NTLSVLQNDLVNEKLKTTHLKNSL-DKLGLAMDDQTDAENILEKILSSPEILNAVKKKLG 637
LS L L K ++ + G + + L K L +P G
Sbjct: 191 --LSNLSISLDGLKFSEDPEASTEPNNDGEDENGHLNGGPGLAKSLGTPRKGELFPPAPG 248
Query: 638 VEHFNDESSLNN-AKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMT 696
V E +L+ KL+ L+ + + +SL LQ +QL + L + +
Sbjct: 249 VSDLFSELNLSEIQKLKQQLEQVEREKASLL---ANLQELQTQLEQSE-GALSEQHEKVN 304
Query: 697 KLHEQLN---------------------------MEYESVVKEIKVLKSTLRDVKNENKT 729
+L E LN YE + ++L+ R +E
Sbjct: 305 RLTEHLNALRNLQASKEQQDGLDSEKDRGSHEDGDYYEVDINGPEILECKYRVAVSEVGE 364
Query: 730 VKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRAL 789
+K + LK Y LQ E K LR E L + L ++ + + L
Sbjct: 365 LKAELKALKARYNELQERYEDEK------DRLRNEIQNLAEKLLSLEKSSHEDQERSGDL 418
Query: 790 QEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLS 829
++ E RKLT E +G L D + S +L+
Sbjct: 419 EK-------ELRKLTHVAGESQGSLNAAQDELVTFSEELA 451
Score = 30.2 bits (68), Expect = 7.2
Identities = 77/371 (20%), Positives = 155/371 (41%), Gaps = 31/371 (8%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
E A ++ ++ LEL+ + L + R EL + +A R+ + EL+ + LE +
Sbjct: 24 ESASKEAYYLQRILELQAE---LKQLRAELSNVQAENERLSSLSQELK---EENEMLELQ 77
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINE--IALERDANAEKLQQLIEENTNLSL--LS 334
R +D++ + YK R L QD + E I+L++ + + Q+ E + L
Sbjct: 78 RGRLRDEIKE---YKFREARLLQDYSELEEENISLQKQVSVLRQSQVEFEGLKHEIRRLE 134
Query: 335 KSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTS----SAQAKALRLELENKRLLSTIE 390
+ + +++Q + L ++A + L E L + Q ALR EL + L
Sbjct: 135 EETELLNSQLEEAARLKEIA-----EKQLEEALETLKTEREQKNALRKELSHHLNLEDFY 189
Query: 391 SLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKIN 450
SL + G L+ ++ + + D E+ L+ +S T + E+
Sbjct: 190 SLSNLSISLDG---LKFSEDPEASTEPNNDGEDENGHLNGGPGLAKSLGTPRKGELFPPA 246
Query: 451 ESYQNL--ELQ---IQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYK 505
+L EL IQ +L+ + REK L +EL+ +E ++ + E
Sbjct: 247 PGVSDLFSELNLSEIQKLKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRL 306
Query: 506 TKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL-KKYNDLK 564
T+ N + ++ KE + D+ +++ + ++ + +E + + +LK
Sbjct: 307 TEHLNALRNLQASKEQQDGLDSEKDRGSHEDGDYYEVDINGPEILECKYRVAVSEVGELK 366
Query: 565 REMDELDSKYQ 575
E+ L ++Y
Sbjct: 367 AELKALKARYN 377
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 30.4 bits (69), Expect = 4.7
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 457 ELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIK 516
E +Q + EL+ +E++ E NK +I ++ + EE+ ++ A E+E +
Sbjct: 86 EQGLQRKLKELEREQKEEEVREKHNK------KIIEKFGEDLEEVYKFMKGEAKVEEEEE 139
Query: 517 KCKEALESKAESLDKLT-NKLESMEKEHVSLTKQIE---DQENELKKYNDLKREMDELDS 572
K E LE +S K+ + +S+++ +L K+ E E ++ + + ++D L +
Sbjct: 140 KQMEILEKALKSYLKIVKEENKSLQRLAKALQKESEERTQDETKMIEE--YRDKIDALKN 197
Query: 573 KYQVDKNTL 581
+V+K L
Sbjct: 198 AIEVEKEGL 206
>gnl|CDD|218762 pfam05816, TelA, Toxic anion resistance protein (TelA). This
family consists of several prokaryotic TelA like
proteins. TelA and KlA are associated with tellurite
resistance and plasmid fertility inhibition.
Length = 333
Score = 30.2 bits (69), Expect = 4.9
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHH----KALINRMKAEMLEL 265
+ + VEL K +L K L++ + E +ELE + K + ++A++L
Sbjct: 97 GGQIDKILVELEKGKDELLKDNAMLDQLYDKNLEYYEELEKYIAAGKLKLAELEAKLLPE 156
Query: 266 RAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQ 301
E G + Q D L+ + RV +L+
Sbjct: 157 LEEKAEGDQM--AAQELNDLEQALDRLEQRVYDLQL 190
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 30.6 bits (70), Expect = 4.9
Identities = 36/185 (19%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 402 ERILELEKE-KKKLSLQVEDLEETKRRLSAQC-----TEYESKFTKLETEIRKINESYQN 455
E I L KE + + Q+E+L+ R ++ + + E + L+ +I + +
Sbjct: 211 EEIPPLLKELQNEFPDQLEELKAGYREMTEEGYHFDHLDIEKELQDLKEQIDQNLALLEE 270
Query: 456 LEL--------QIQVRNDEL-DNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKT 506
L+L +I+ R D L D + +E ++ K + ++ L + E+ +
Sbjct: 271 LDLDEAEEENEEIEERIDTLYDILEKE---VKAKKFVEKNIDKLTDFLEHAREQNKQLLL 327
Query: 507 KLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKRE 566
+L +++ E + E++ +L +LE +E ++ L ++I +++ Y++L+ E
Sbjct: 328 ELD----RLQQSYTLNEDELETVRELEKQLEELEAQYDQLVERIAEKK---VAYSELQEE 380
Query: 567 MDELD 571
++E++
Sbjct: 381 LEEIE 385
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 30.0 bits (68), Expect = 5.0
Identities = 20/93 (21%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 447 RKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEIN-EYK 505
+ + E+ +NL ++Q ELDN+ ++ LE K + + +E ++ + + +
Sbjct: 167 KALKEAIKNLAARLQQLQAELDNLKSDEANLEAKIERKKQELERTQKRLQALQSVRPAFM 226
Query: 506 TKLANCEKEIKKCKEALESKAESLDKLTNKLES 538
+ E+E++K + K +LD L ++L++
Sbjct: 227 EEYEKLEEELQKLYQTYFEKFRNLDYLESQLDA 259
Score = 30.0 bits (68), Expect = 5.3
Identities = 22/146 (15%), Positives = 57/146 (39%), Gaps = 21/146 (14%)
Query: 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNRE 473
L ++ DL + +E + L + K + ++ + + R EL
Sbjct: 114 LGSKISDL----KAARQLASEITERGAALYDLLGKELDLRESRQKALS-RPLELA----- 163
Query: 474 KQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLT 533
E+ + + + N + + + +L N + + + +E K + L++
Sbjct: 164 -----------EVEKALKEAIKNLAARLQQLQAELDNLKSDEANLEAKIERKKQELERTQ 212
Query: 534 NKLESMEKEHVSLTKQIEDQENELKK 559
+L++++ + ++ E E EL+K
Sbjct: 213 KRLQALQSVRPAFMEEYEKLEEELQK 238
Score = 30.0 bits (68), Expect = 6.1
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 481 NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESME 540
KEL+L K LS E LA EK +K EA+++ A L +L +L++++
Sbjct: 143 GKELDLRESRQKALSRPLE--------LAEVEKALK---EAIKNLAARLQQLQAELDNLK 191
Query: 541 KEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
+ +L +IE +K +L+R L +
Sbjct: 192 SDEANLEAKIE------RKKQELERTQKRLQA 217
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 30.2 bits (69), Expect = 5.2
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%)
Query: 366 QLTSSAQAKALRLELENKRLLSTIESLHENAFYESGE-RILELEKEKKKLSLQVEDLEET 424
+L A A+ + L L T S++ A +++G + L K+ L ++ E
Sbjct: 282 ELKRGAMAEVVLNGLYKLTKLQTTFSINMLALFDNGRPKKYNL---KEILKEFLDHRLEV 338
Query: 425 -KRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKE 483
RR EY KLE E I E DE+ + R + L + KE
Sbjct: 339 YTRR-----KEYLLG--KLEAERLHILEGL----FIALSIIDEIIVLIRSSKDLAKEAKE 387
Query: 484 LE--------------LNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAE 527
L+M + ++L+ E+ + + +L EKEI+ ++ L S+
Sbjct: 388 KLMERFELSEIQADAILDMRL-RRLTK--LEVEKLEKELKELEKEIEDLEKILASEEW 442
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 29.5 bits (67), Expect = 5.3
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 498 TEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL 557
+ I E K + EK+IKK + ++ A+ +K + L KQ + E +L
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALI---------LLKQKKRYEKQL 57
Query: 558 KKYNDLKREMDELDSKYQVDKNTLSVLQN-DLVNEKLKTTHLKNSLDKLGLAMD---DQT 613
+ + ++++ + K VL + +K + +DK+ MD DQ
Sbjct: 58 DQLDGQLANLEQVRMAIENAKTNQEVLNAMKGGAKAMKAMNKNMDIDKIDDLMDEIEDQM 117
Query: 614 DAENILEKILSSP 626
+ + + ++LS
Sbjct: 118 EKADEISEMLSDT 130
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 30.4 bits (69), Expect = 5.5
Identities = 36/190 (18%), Positives = 69/190 (36%), Gaps = 32/190 (16%)
Query: 282 YKDKLTDLEYYKSRVE-ELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCV 340
D T + + + E E+ DN+++ L+ A + IE + +
Sbjct: 405 AADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFD----------I 454
Query: 341 DNQSVSSVDLNDLA---------------SPGSGDNSLSEQLTSSAQAKALRLELENKRL 385
D + +V DL S + + + ++A K R +E +
Sbjct: 455 DANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNE 514
Query: 386 LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETE 445
++ E A E E+EK+K+ + DLEE L + E ++K +L+
Sbjct: 515 AESLIYSLEKALKEIV---KVSEEEKEKIEEAITDLEEA---LEGEKEEIKAKIEELQEV 568
Query: 446 IRKINESYQN 455
+K+ E
Sbjct: 569 TQKLAEKKYQ 578
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 30.5 bits (69), Expect = 5.6
Identities = 41/185 (22%), Positives = 60/185 (32%), Gaps = 38/185 (20%)
Query: 274 ALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLL 333
ALE + Y+D+L LE + + Q R L R A L T L
Sbjct: 228 ALEQ-LDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATR-----LRSAQTQYDQL 281
Query: 334 SKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLH 393
S+ DL E+ A+ LE E L + +E+L
Sbjct: 282 SR-------------DLGRARDELET---AREEE-RELDARTEALEREADALRTRLEALQ 324
Query: 394 ENAFYESGERILELEKEKKKLSLQVED-----------LEETKRRLSAQCTEYESKFTKL 442
+ Y+ E + + + L D LEE +RRL E +
Sbjct: 325 GSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRL----DEEAGRLDDA 380
Query: 443 ETEIR 447
E E+R
Sbjct: 381 ERELR 385
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.7 bits (65), Expect = 5.6
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 5/96 (5%)
Query: 464 NDELDNMNREKQKLEWKNKELELNM-----EINKQLSNNTEEINEYKTKLANCEKEIKKC 518
LD E ++ E K+ E + E+ + L + + E + K EK+ ++
Sbjct: 13 QLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEE 72
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQE 554
K+ + K E + +L +LE ++ E L +++E+ +
Sbjct: 73 KKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQ 108
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 30.2 bits (68), Expect = 5.7
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 472 REKQKLEWKNKELELNMEINKQLSNNTEEIN-EYKTKLANCEKEIKKCKEALESKAESLD 530
++ K E K + EL +E ++ EEI E+K++ +E+K+ + L +A SLD
Sbjct: 59 KKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSE----RQELKQIESRLTERATSLD 114
Query: 531 K----LTNKLESMEKEHVSLT---KQIEDQENELKKYNDLKRE 566
+ L++K +++E + SLT K I+++E +++K + K+
Sbjct: 115 RKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKA 157
>gnl|CDD|224234 COG1315, COG1315, Uncharacterized conserved protein [Function
unknown].
Length = 543
Score = 30.1 bits (68), Expect = 6.0
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 6/114 (5%)
Query: 448 KINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTK 507
+I E + L +I + + L + + L ++++ + N + +
Sbjct: 407 EIVERLKELTEEISLHEERLKKLTKLLVAL----VKVKIESKKNILPPDKESLLTAVNNT 462
Query: 508 LANCEKEIKKCKEALESKAESLD--KLTNKLESMEKEHVSLTKQIEDQENELKK 559
I+K K LE E L+ + + + + + D E K
Sbjct: 463 KITLRNSIEKIKAELEGLQEELEVVGIEGSVSVKNQVYSGVKIYFGDAYQETIK 516
>gnl|CDD|215969 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A.
Length = 427
Score = 30.2 bits (69), Expect = 6.0
Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 41/167 (24%)
Query: 366 QLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETK 425
+L SS L L + L+ E L E F E R+ ++ K+ LE+ +
Sbjct: 284 KLQSSFSTNNLVLFDGGPKYLNLKEILKE--FLE--HRLEVYKRRKEY------LLEKLE 333
Query: 426 RRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELE 485
RL K +I + I+V +D + K++L + E++
Sbjct: 334 ERL-----HILEGLLKALNKIDFV----------IEVIRGSIDL-KKAKKELIEELSEIQ 377
Query: 486 ----LNM-----------EINKQLSNNTEEINEYKTKLANCEKEIKK 517
L+M ++ K++ +EI E + LA+ +K K
Sbjct: 378 ADYLLDMRLRRLTKEEIEKLEKEIEELEKEIAELEKILASEKKLWIK 424
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 29.3 bits (66), Expect = 6.1
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 461 QVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKE 520
R +E+ N+ E + NK ++ + + + E Y LA + ++KK
Sbjct: 42 VERMEEIKNLKYELIMNDHLNKRID-KLLKGLREEELSPETPTYNEMLAELQDQLKK--- 97
Query: 521 ALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
LE + L +L+ + K++ + +EL+K
Sbjct: 98 ELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEK 136
>gnl|CDD|221419 pfam12097, DUF3573, Protein of unknown function (DUF3573). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 372 to 530 amino acids in length.
Length = 375
Score = 29.8 bits (67), Expect = 6.3
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKR-RLSAQCTEYESKFTKLETEIRKINESYQNLELQI 460
+ I +L+K+ K L Q+ LEE LS+Q Y S K+ N + L L
Sbjct: 42 KDISKLQKQIKSLQAQINHLEEQTNSNLSSQFATYSS---KVNDSTLTGNGETKVLSLGQ 98
Query: 461 QVRNDELDNMNRE 473
+ N D M+ E
Sbjct: 99 RNNNIASDIMSNE 111
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 30.3 bits (69), Expect = 6.6
Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 21/142 (14%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK 273
Q L L + L+ +L E + E E + + I R+K ++ EL+
Sbjct: 743 QELEDLLRESSDILKVPPEQLPETVKRFFE---EWKEQRKEIERLKKKLAELKI-----Y 794
Query: 274 ALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLL 333
L SE +R + VE + D + EIA + + + N ++
Sbjct: 795 ELISEAERIGG-------VEVIVELVDADMDELQEIAEKLAEKGLVVVLVSGGGGNGRVV 847
Query: 334 SKSNQCVDNQSVSSVDLNDLAS 355
S + VD +L
Sbjct: 848 ISSGEKAG------VDAGELVR 863
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 28.9 bits (65), Expect = 6.9
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQN--LELQIQVR 463
ELE E + L E L R + E K + E E+ + + Q +L+ VR
Sbjct: 47 ELEVELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVR 106
Query: 464 NDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYK 505
EL N Q + +E EL E N T+ + Y
Sbjct: 107 QLELKAKNLSDQVSRLEERETELKKEYNSLHERYTKLLKNYV 148
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.1 bits (68), Expect = 7.0
Identities = 30/193 (15%), Positives = 75/193 (38%), Gaps = 14/193 (7%)
Query: 378 LELENKRLLSTIESL--HENAFYESGERILELEKE-KKKLSLQVEDLEETKRRLSAQCTE 434
L++ + + +E L ++I +L E +KKL +++ LE + + E
Sbjct: 252 LDVVPLKAYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEE 311
Query: 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQL 494
E +L + + + Q +E + + + + N+E+++ ++ +K
Sbjct: 312 LEKAAEELRQKGELLYANLQLIE----------EGLKSVRLADFYGNEEIKIELDKSKTP 361
Query: 495 SNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH-VSLTKQIEDQ 553
S N + + KL + + + L+ + LE E + + ++ +
Sbjct: 362 SENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIE 421
Query: 554 ENELKKYNDLKRE 566
E LK +++
Sbjct: 422 EGLLKSKKKKRKK 434
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 28.9 bits (65), Expect = 7.3
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 467 LDNMNREKQKLEWKNKE-----LELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEA 521
+DN N + K K E+ EI L N EE N+ + +K I K KE
Sbjct: 36 MDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIR------QKAIAKAKEE 89
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDEL 570
E K E+ K +E ++ + KQ+ +Q+ ELK L +M E
Sbjct: 90 AEKKIEA------KKAELESKYEAFAKQLANQKQELK--EQLLSQMPEF 130
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 29.8 bits (67), Expect = 7.3
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 10/146 (6%)
Query: 730 VKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAE----HSKLKD----DFRILFTANEK 781
++++ + LK+ + E+ +LK E L + R+ +K R L
Sbjct: 105 LEDELAALKIRLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSLQDKLLL 164
Query: 782 LKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY--QNKLEDDR 839
L A + + K TL L L ELA R A+ LS L + +L
Sbjct: 165 LDAAVKRHDGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLL 224
Query: 840 RKLMEHVTNLLAQYHELLTHSLEDKD 865
R E L QY + L+ K+
Sbjct: 225 RAEGESEKQELQQYRQKAHRILQSKE 250
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 29.6 bits (67), Expect = 7.5
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 277 SEIQRYKDKLTD-----LEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLS 331
S +QR + + E S + LR++N + + LE ++ ++L+QL EN L
Sbjct: 48 SPVQRVVNAPREFVSGVFESLASLFD-LREENEELKKELLELESRLQELEQLEAENARLR 106
Query: 332 LLSKSNQCVDNQSVSSVDLNDLASPGSGDNSL 363
L + +D Q +++ ++ SP +
Sbjct: 107 ELLNLKESLDYQFITARVISR--SPDPWSQQV 136
>gnl|CDD|149105 pfam07851, TMPIT, TMPIT-like protein. A number of members of this
family are annotated as being transmembrane proteins
induced by tumour necrosis factor alpha, but no
literature was found to support this.
Length = 330
Score = 29.7 bits (67), Expect = 7.7
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 478 EWK--NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNK 535
EWK KE + E ++ EE+ + + + C I + ++ L+ SL KL
Sbjct: 5 EWKELEKEFQQLQETHRLYKQKLEEVEKLQEQ---CTSAIARQRKRLKQLIVSLKKLKKS 61
Query: 536 LESMEKEHVSLTKQIEDQENELKKYNDLKREMD 568
L + E V E E ++K+ + +M+
Sbjct: 62 LTPEDSELV------EQLEEQIKERKNQFFDME 88
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 29.1 bits (66), Expect = 7.9
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 458 LQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKK 517
Q+Q+ N L+ K+E +NKEL+ + + +N + K KL E+E+++
Sbjct: 45 EQLQIENQALNE------KIEERNKELK---RLKLKYTNTVHILTHLKEKLHMLEEELER 95
Query: 518 CKEALESKAESLDKLTNKLESMEKEHVSLTKQIED--QENELKKYNDLKREMDELDSKYQ 575
K+ L+ K E L KL +L ++ E L KQ + Q+ L L + D+ K +
Sbjct: 96 LKKELKEKEERLAKLRKELYKVKLERDKLRKQNKKLRQQGGLLHVPALLYDYDKTVEKVE 155
Query: 576 VDKNTLSVLQ 585
+ ++ L+
Sbjct: 156 EKRKSVEKLR 165
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 29.8 bits (67), Expect = 8.0
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQIEDQ--------ENELKKYNDLKREMDELDSK 573
++SK E LD+L ++ ++ E +L K+ ++ EL +D +R+ EL+ +
Sbjct: 405 IDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEEL---SDKERQYSELEEE 461
Query: 574 YQVDKNTLSVLQN 586
++ +K +LS Q
Sbjct: 462 WKAEKASLSGTQT 474
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 29.7 bits (67), Expect = 8.1
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 13/147 (8%)
Query: 378 LELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYES 437
+LE + + +E E A + E+ ++ K + QV L+ET++ L AQ Y
Sbjct: 165 KDLEQQLNDAKLEQAQEQA-EQEQEKHKREKEILLKEAAQVSTLKETEKELRAQLNLYSD 223
Query: 438 KFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLE-----WKNKELELNMEINK 492
KF + + + K NE + + E++ M+++ +KLE WK K + N + +
Sbjct: 224 KFKEFQDTLNKSNEVFLTFK-------QEMEKMSKKIKKLEKENLAWKRKWEKSNKALLE 276
Query: 493 QLSNNTEEINEYKTKLANCEKEIKKCK 519
+ E + +K K C+
Sbjct: 277 MAEERQKRDKEIEKLKKKIDKLEKLCR 303
>gnl|CDD|131099 TIGR02044, CueR, Cu(I)-responsive transcriptional regulator. This
model represents the copper-, silver- and gold- (I)
responsive transcriptional activator of the gamma
proteobacterial copper efflux system. This protein is a
member of the MerR family of transcriptional activators
(pfam00376) and contains a distinctive pattern of
cysteine residues in its metal binding loop, Cys-X7-Cys.
This family also lacks a conserved cysteine at the
N-terminal end of the dimerization helix which is
required for the binding of divalent metals such as
zinc; here it is replaced by a serine residue
[Regulatory functions, DNA interactions].
Length = 127
Score = 28.2 bits (63), Expect = 8.6
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 191 DRYLQTWRLVEEKRNPSIGNSECQHLAV-------ELADLKSKLRKQRLELEEKSEHLTE 243
++L RL+ R EC+ L AD+K++ ++ E+E K L
Sbjct: 41 QQHLDELRLISRARQVGFSLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISELQS 100
Query: 244 SRDELEH 250
RD+LE
Sbjct: 101 MRDQLEA 107
>gnl|CDD|227250 COG4913, COG4913, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1104
Score = 30.0 bits (67), Expect = 8.7
Identities = 45/253 (17%), Positives = 84/253 (33%), Gaps = 58/253 (22%)
Query: 215 HLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKA 274
H L LK++ K ++ +H + L + NR+K E E + +
Sbjct: 259 HTLDPLVQLKNRREKA----QQSKDHANALKKAL---PTVGNRIKKEEQETLVRQFTVEQ 311
Query: 275 LESEIQRYKDKLTDLEYYKSRVEELR-QDNRAINEIALERDANAEKLQQLIEENTNLSLL 333
++ KS+VE + + +RA L D + + L
Sbjct: 312 TQA---------------KSKVESAKIETDRAREMETLAHDNVKQIVGAQHGI-----LS 351
Query: 334 SKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLH 393
+K VD + S + +G ++L + L +A A L N T++
Sbjct: 352 AKREGAVDKRRTIS-------TARAGLDALVKGLGGAAPESAEELLELNNAARLTVD--- 401
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
+ E LE +R T +F + E+ +++
Sbjct: 402 -------------------EYPAAREALESAGQRNVEDRTRAVDEFKAADQELSSLSKGS 442
Query: 454 QNLEL-QIQVRND 465
N+E +QVR +
Sbjct: 443 SNIEYRLLQVREN 455
>gnl|CDD|204187 pfam09278, MerR-DNA-bind, MerR, DNA binding. Members of this
family of DNA-binding domains are predominantly found in
the prokaryotic transcriptional regulator MerR. They
adopt a structure consisting of a core of three alpha
helices, with an architecture that is similar to that of
the 'winged helix' fold.
Length = 65
Score = 27.1 bits (61), Expect = 9.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 221 ADLKSKLRKQRLELEEKSEHLTESRDELEH 250
AD+++ LR++ ELE + L R EL+
Sbjct: 35 ADVRALLREKLAELEARIAELQALRAELDA 64
>gnl|CDD|216919 pfam02181, FH2, Formin Homology 2 Domain.
Length = 372
Score = 29.6 bits (67), Expect = 9.0
Identities = 44/235 (18%), Positives = 99/235 (42%), Gaps = 32/235 (13%)
Query: 553 QENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKT-----------THLKNS 601
+ ELKK + K + +L ++ L + + + E+L+ LK S
Sbjct: 126 TKEELKKLKEYKGDPSKLGRA---EQFLLELSKIPRLEERLEALLFKSTFEEEVEELKPS 182
Query: 602 LDKLGLAMDDQTDAE---NILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKT 658
L+ L A ++ ++ +LE IL+ +N+ ++ + F SSL KL D K+
Sbjct: 183 LETLEAASEELRESRKFKKLLELILALGNYMNSGTRRGNAKGFK-LSSLL--KL-SDTKS 238
Query: 659 SQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKS 718
+ ++ + L H ++I +LL ++ + + ++ E + K++K L+
Sbjct: 239 TDNKTTLL---HYL-----VKIIREKLPDLLDFSSELSHVEKAAKVDLEQLEKDVKELEK 290
Query: 719 TLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFR 773
L+ ++ E + E ++ +E+ + + L L + + + F+
Sbjct: 291 GLKKLERELELSALDEHPDDKFVEKMKEFLEEAEEK---LDKLESLLKEAMELFK 342
>gnl|CDD|220494 pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203).
This domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 120
Score = 28.0 bits (63), Expect = 9.7
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 254 LINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALE 312
+ R+ E+ E +AE +A SE +R + E + E++R I E+ +E
Sbjct: 14 ELRRLLEEVREAKAELEELEAALSEGERSLEARGLKEELRELEEQIRAAIAEIEELGIE 72
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.126 0.332
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 46,634,889
Number of extensions: 4678194
Number of successful extensions: 10958
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8054
Number of HSP's successfully gapped: 1393
Length of query: 964
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 858
Effective length of database: 6,236,078
Effective search space: 5350554924
Effective search space used: 5350554924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (28.4 bits)