RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3622
(964 letters)
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA,
riken structural genomics/proteomics initiative, unknown
function; NMR {Mus musculus} SCOP: a.40.3.1
Length = 164
Score = 129 bits (325), Expect = 1e-34
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 6 ATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSL 65
+S L L+ WL + D + L +G+ + +V ID +S + +
Sbjct: 1 GSSGSSGLPLCDSLIIWLQT-FKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRI 59
Query: 66 R-----NASVRIKNFNTIVKNIKSLYEEELCQIV--LVLPDVLIIGREPESKQGLENMKL 118
+ N ++ N ++ I S Y E L Q + ++PD+ I +
Sbjct: 60 KDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECA----DPVELGR 115
Query: 119 LLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQD 163
LL L+LGCAV C K+ I+ I L QH ++ I+++
Sbjct: 116 LLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 97.2 bits (241), Expect = 1e-20
Identities = 118/770 (15%), Positives = 223/770 (28%), Gaps = 259/770 (33%)
Query: 177 EVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEE 236
+++ A D + V++ + E H+ + D S + L
Sbjct: 20 DILSVFEDAFVDNFD-----CKDVQDMPKSILSKEEIDHI-IMSKDAVSGTLRLFWTLLS 73
Query: 237 KSEHLTES--RDELE-HHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYK 293
K E + + + L ++K L++ +K E + Y
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTE--------------------QRQPSMMTRMYI 113
Query: 294 SRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDL 353
+ + L DN+ + + R + +L + L + +V ++ +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLEL------------RPAKNVLIDGV 158
Query: 354 ASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKK 413
GSG ++ + ++ ++ F+
Sbjct: 159 L--GSGKTWVA--------LDVCL----SYKVQCKMDF---KIFW--------------- 186
Query: 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQI-QVRNDELDNMNR 472
L+L C E+ L Q L QI D+ +
Sbjct: 187 LNL-------------KNCNSPETVLEML-----------QKLLYQIDPNWTSRSDHSSN 222
Query: 473 EKQKLEWKNKELELNMEINKQLSN---------NTEEINEYKTKLANCEKEIKKCKEALE 523
K ++ EL ++ +K N N + N + CK L
Sbjct: 223 IKLRIHSIQAELRRLLK-SKPYENCLLVLLNVQNAKAWNAFNL----------SCKILLT 271
Query: 524 SK----AESLDKLTNKLESMEKEHVSLTKQIEDQENEL------KKYNDLKREM------ 567
++ + L T S++ ++LT D+ L + DL RE+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 568 ----------DELD-----SKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQ 612
D L DK T +++++ L L+ + D+L +
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSL--NVLEPAEYRKMFDRLSVFPPS- 384
Query: 613 TDAENILEKILSSPEILNAVKKKLGVEHFNDE---SSLNNAKLEVDLKTSQSQISSLTSQ 669
+I +L ++ K V ++ SL +E K S I
Sbjct: 385 ---AHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSL----VEKQPKESTISI------ 428
Query: 670 HTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKT 729
++ L EL LH + Y D +
Sbjct: 429 P-SIYL-----------ELKVKLENEYALHRSIVDHYNIPKT---------FDSDDLIPP 467
Query: 730 VKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRAL 789
+QY + + H L N EH + FR++F DFR L
Sbjct: 468 YLDQYFYSHIGH--------------H-LKN--IEHPERMTLFRMVFL-------DFRFL 503
Query: 790 QEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRK-------- 841
+ +K+ + N +I QL Y+ + D+ K
Sbjct: 504 E----------QKI-----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 842 ---LMEHVTNLL-AQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEK 887
L + NL+ ++Y +LL +L +D EE H+Q ++
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA---------HKQVQR 589
Score = 88.8 bits (219), Expect = 5e-18
Identities = 91/585 (15%), Positives = 188/585 (32%), Gaps = 151/585 (25%)
Query: 379 ELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK 438
RL T+ S E + E +L + + ++ E + + Y +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----RMYIEQ 115
Query: 439 FTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEIN------- 491
+L + + + N++R + L+ + LEL N
Sbjct: 116 RDRLYNDNQVFAK----------------YNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 492 ---KQ-LSNNTEEINEYKTKLANCEK----EIKKCKEALESKAESLDKLTNKLESMEKEH 543
K ++ + YK + K +K C E+ E L KL +++
Sbjct: 160 GSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDPNWTSR 216
Query: 544 VSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEK----------- 592
+ I+ + + ++ L+R + Y +N L VL N V
Sbjct: 217 SDHSSNIKLRIHSIQAE--LRRLL--KSKPY---ENCLLVLLN--VQNAKAWNAFNLSCK 267
Query: 593 -LKTTHLKNSLDKLG------LAMDD------QTDAENILEKILS-------------SP 626
L TT K D L +++D + +++L K L +P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 627 EILNAVKKKL--GVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILAN 684
L+ + + + G+ +++ +N KL +++S + + + +L+ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPP 383
Query: 685 HNELLQDQMTMTKLHEQL--NMEYESVVKEI--KVLKSTLRDVKNENKTVKEQYSQLKVS 740
T L + ++ V + K+ K +L V++Q + +S
Sbjct: 384 ------SAHIPTILLSLIWFDVIKS-DVMVVVNKLHKYSL---------VEKQPKESTIS 427
Query: 741 YESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEE-----HKG 795
S+ E++ L N A H + D + I T + D + H G
Sbjct: 428 IPSIYLELKV------KLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIG 478
Query: 796 NHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDR--RKLMEHVTNLLAQ- 852
+H++ E R + + + K+ D + N L Q
Sbjct: 479 HHLKN-----------IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 853 --YHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEH 895
Y K + + + + +N + K+EE ++
Sbjct: 528 KFY----------KPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Score = 79.5 bits (195), Expect = 4e-15
Identities = 101/626 (16%), Positives = 198/626 (31%), Gaps = 168/626 (26%)
Query: 393 HENAFYESGER------ILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEI 446
H + +E+GE IL + ++ + +D+++ + + +K EI
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----------LSK--EEI 51
Query: 447 RKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKT 506
I S + L KQ+ E+ ++ IN YK
Sbjct: 52 DHIIMSKDAVS-----GTLRLFWTLLSKQE------------EMVQKFVEEVLRIN-YKF 93
Query: 507 KLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKRE 566
++ + E ++ E D+L N + K +VS L+ Y L++
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQA 143
Query: 567 MDELDSKYQVDKNTL--------SVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQ------ 612
+ EL V + + + D+ K+ MD +
Sbjct: 144 LLELRPAKNV---LIDGVLGSGKTWVALDVCLS-----------YKVQCKMDFKIFWLNL 189
Query: 613 ---TDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQ 669
E +LE +L + ++ + +N KL + + Q+++ L
Sbjct: 190 KNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSNIKLRIH--SIQAELRRLLKS 240
Query: 670 HTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEI----KVLKSTLRDVKN 725
N L+L N +Q+ K+L +T R +
Sbjct: 241 K---PYENCLLVLLN----VQN---------------AKAWNAFNLSCKILLTT-RFKQV 277
Query: 726 ENKTVKEQYSQLKVSYESL---QAEMEQL--KFESHSLSNLRAEHSKLKDDFRI-LFTAN 779
+ + + + + S+ E++ L K+ +L E + R+ +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE- 335
Query: 780 EKLKADFRALQEEHKGNHMEKRKLT----LSLTELE-GELAN--------RDDA-ISALS 825
D A + K H+ KLT SL LE E A I
Sbjct: 336 --SIRDGLATWDNWK--HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-I 390
Query: 826 VQLSKY-QNKLEDDRRKLMEHVTN--LLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLH 882
+ LS + ++ D ++ + L+ + + T S+ + E K + LH
Sbjct: 391 L-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---IYLELKVKLENEYALH 446
Query: 883 RQKEKLEEKIMEHYRKLDSCSSSSKKKSFGAN-----LVRKVRKAG-SELINKSRK---- 932
R I++HY + S + + ++ E + R
Sbjct: 447 R-------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 933 -SWHEDSLRKDRGT--DSDTSLEDTL 955
+ E +R D T ++ S+ +TL
Sbjct: 500 FRFLEQKIRHD-STAWNASGSILNTL 524
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 88.7 bits (220), Expect = 5e-18
Identities = 66/373 (17%), Positives = 150/373 (40%), Gaps = 50/373 (13%)
Query: 187 AKERDRYLQTWRLVEEKRNPSIGN-SECQHLAVELADLKSKLRKQRLELEEKSEHLTESR 245
+E + + +E++ + E + +L + K+ L+++ E E R
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915
Query: 246 DELEHHKALINRMKAEMLE-LRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNR 304
L K + + EM + E + L++E ++ + ++ DLE E+L ++
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE------EQLEEEEA 969
Query: 305 AINEIALERDANAEKLQQLIEENTNL----SLLSKSNQCVDNQSVSSVDLNDLASPGSGD 360
A ++ LE+ K++++ ++ + + L+K + ++ +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV---------------- 1013
Query: 361 NSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVED 420
+ L+ L + + KA L + S I L L+KE+K ++
Sbjct: 1014 SDLTTNL-AEEEEKAKNLTKLKNKHESMISELEV-----------RLKKEEK----SRQE 1057
Query: 421 LEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK 480
LE+ KR+L + ++ + +L+ +I ++ E ++Q L++ +K K
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 481 NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESME 540
+ELE +S+ E++ K EK+ + E LE+ L+ + + +
Sbjct: 1118 IRELE------SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171
Query: 541 KEHVSLTKQIEDQ 553
+ S K +D+
Sbjct: 1172 ELRGSDYKDDDDK 1184
Score = 86.4 bits (214), Expect = 3e-17
Identities = 58/350 (16%), Positives = 139/350 (39%), Gaps = 30/350 (8%)
Query: 276 ESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSK 335
E E+Q ++L K R ++ + + + + + LQ+ ++ T L ++
Sbjct: 856 EEEMQAKDEELQRT---KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET--ELYAE 910
Query: 336 SNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHEN 395
+ + + +L ++ + ++ + ++ +L+ E K++ + L E
Sbjct: 911 AEEMRVRLAAKKQELEEILH------EMEARI-EEEEERSQQLQAEKKKMQQQMLDLEE- 962
Query: 396 AFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQN 455
++ E E ++KL L+ + +++ E + KL E + + E +
Sbjct: 963 -------QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Query: 456 LELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEI 515
L + ++ N+ + K K E ELE+ ++ + + +E+ + K KL E E
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLK---KEEKSRQELEKIKRKL---EGES 1069
Query: 516 KKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE----LKKYNDLKREMDELD 571
E + + +L +L E+E + ++ED+ ++ LKK +L+ + +L
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 572 SKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEK 621
+ +K + + + + LK L+ Q + K
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYK 1179
Score = 82.6 bits (204), Expect = 4e-16
Identities = 61/336 (18%), Positives = 145/336 (43%), Gaps = 14/336 (4%)
Query: 438 KFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNN 497
K T+ E E++ +E Q + + Q EL + ++ +L + L+ ++ +L
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 498 TEEINEY-KTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE 556
EE+ K E+ + + + +E + E +L + + M+++ + L +Q+E++E
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 557 LKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAE 616
+K L+ E D K + ++ + ++++ + L+ + L + ++ +
Sbjct: 971 RQK---LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 617 NILEKILSSPE-ILNAVKKKLGVE-HFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQ 674
L K+ + E +++ ++ +L E E KLE + QI+ L +Q L+
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
Query: 675 LANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQY 734
A + ++ E + + +K+I+ L+S + D++ + ++ K
Sbjct: 1088 --------AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139
Query: 735 SQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKD 770
++ + L E+E LK E + A +L+
Sbjct: 1140 NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Score = 81.8 bits (202), Expect = 6e-16
Identities = 52/328 (15%), Positives = 132/328 (40%), Gaps = 14/328 (4%)
Query: 367 LTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVE------- 419
L + Q + ++ + E + + E E ++ +L +EK L +++
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 420 DLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEW 479
+ EE + RL+A+ E E ++E I + E Q L+ + + ++ ++ + ++ E
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 480 KNKELEL-NMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLES 538
++L+L + + ++ ++I + + KE K +E + +L + K ++
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 539 MEKEHVSLTKQIEDQENEL----KKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLK 594
+ K I + E L K +L++ +L+ + ++ LQ + K +
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Query: 595 TTHLKNSLDKLGLAMDDQTDAENILEKILSSPEI-LNAVKKKLGVEHFN-DESSLNNAKL 652
+ L ++D+T +N K + E ++ +++ L E +++ L
Sbjct: 1090 LAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL 1149
Query: 653 EVDLKTSQSQISSLTSQHTALQLANSQL 680
+L+ ++++ Q
Sbjct: 1150 SEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 75.3 bits (185), Expect = 7e-14
Identities = 62/344 (18%), Positives = 137/344 (39%), Gaps = 21/344 (6%)
Query: 507 KLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKRE 566
K+ E+E++ E L+ E K +L+ +E++H L ++ + +L+ +L E
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 567 MDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSP 626
+E+ + K L + +++ +++ + +L ++ + + +
Sbjct: 911 AEEMRVRLAAKKQELEEILHEM-EARIEE--EEERSQQL---QAEKKKMQQQMLDLEEQL 964
Query: 627 EILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHN 686
E A ++KL +E + + +E D+ + Q + LT + L+ S L N
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKK--MEDDILIMEDQNNKLTKERKLLEERVSDL-TTNLA 1021
Query: 687 ELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQA 746
E + +TKL + + +K + + ++++ + ++ + S L LQA
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 747 EMEQLKFE----SHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEE-------HKG 795
++ +LK + L A +L++ LQE+
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 796 NHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDR 839
+KR L+ L L+ EL + D + +L K +DD+
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTLDTTATQQ-ELRGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 69.8 bits (171), Expect = 3e-12
Identities = 37/207 (17%), Positives = 83/207 (40%), Gaps = 30/207 (14%)
Query: 371 AQAKALRLELENKRLLSTIESLH--ENAFYESGERILELEKEKKKLSLQVEDLEETKRRL 428
A+ + +L++E + + + EN + +I E KE K L ++ +LE T
Sbjct: 902 AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS-- 959
Query: 429 SAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNM 488
K +R E +N ++ +E+ + +E + + + K +E
Sbjct: 960 -----TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE--- 1011
Query: 489 EINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTK 548
E ++YK + E+K+ L+++ E L++ ++ KE +
Sbjct: 1012 ----------EWADKYKHETEQLVSELKEQNTLLKTEKEELNR---RIHDQAKEITETME 1058
Query: 549 QIEDQENELKKYNDLKREMDELDSKYQ 575
+ E K+ L+ ++++ +YQ
Sbjct: 1059 K--KLVEETKQ---LELDLNDERLRYQ 1080
Score = 58.6 bits (142), Expect = 8e-09
Identities = 33/239 (13%), Positives = 80/239 (33%), Gaps = 18/239 (7%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
R+ + K + + L+ R + I+K + +
Sbjct: 827 RMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT 886
Query: 463 RNDELDNMN--------REKQKLEWKNKELELNMEINKQLSNN----TEEINEYKTKLAN 510
+ RE +KL+ + + +E +++ L N +I+E + +
Sbjct: 887 LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946
Query: 511 CEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK----YNDLKRE 566
+++ + ++ E L +L E+E + T ++ + E+ K + + E
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTE 1006
Query: 567 MDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSS 625
++ K+ L ++L + K L++ D + +EK L
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR--RIHDQAKEITETMEKKLVE 1063
Score = 57.8 bits (140), Expect = 2e-08
Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 32/241 (13%)
Query: 221 ADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQ 280
++ L + K+ + K + ++K E + + LE++I
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 281 RYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCV 340
+ + K+ + +E + +N + + EKL+ +E L + + +
Sbjct: 932 QLQRKIDEQN------KEYKSLLEKMNNLEITYSTETEKLRSDVER---LRMSEEEAKNA 982
Query: 341 DNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYES 400
N+ +S + L ++L Q + +E + E L
Sbjct: 983 TNRVLSLQEEIA---------KLRKEL-HQTQTEKKTIEEWADKYKHETEQLVS------ 1026
Query: 401 GERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQI 460
EL+++ L + E+L + + TE K KL E +++ + L+
Sbjct: 1027 -----ELKEQNTLLKTEKEELNRRIHDQAKEITETMEK--KLVEETKQLELDLNDERLRY 1079
Query: 461 Q 461
Q
Sbjct: 1080 Q 1080
Score = 55.9 bits (135), Expect = 6e-08
Identities = 33/257 (12%), Positives = 82/257 (31%), Gaps = 17/257 (6%)
Query: 630 NAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELL 689
+ + + + + E Q + ++ + + + L +
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900
Query: 690 QDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEME 749
+ + ++L +E SV + K+ ++N+ ++ + + Y+SL +M
Sbjct: 901 MAK----RELKKLKIEARSVERYKKLHI----GLENKIMQLQRKIDEQNKEYKSLLEKMN 952
Query: 750 QLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTE 809
L+ S + + R+ + +LQEE E +
Sbjct: 953 NLEIT---YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Query: 810 LEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHE 869
+E L +L + L+ ++ +L + + + E + L E
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV------E 1063
Query: 870 EEKNFSDKLNNLHRQKE 886
E K LN+ + +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080
Score = 55.5 bits (134), Expect = 8e-08
Identities = 45/264 (17%), Positives = 86/264 (32%), Gaps = 34/264 (12%)
Query: 233 ELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQR-YKDKLTDLEY 291
L + + L HK++I + R +Q Y+ + E
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 292 YKSRVEELRQDNRAINEIALERDAN--AEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVD 349
K ++E + I LE K+ + +E +L +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN------------- 953
Query: 350 LNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEK 409
++T S + + LR ++E R+ N E I +L K
Sbjct: 954 ---------------LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
E + + + +EE + E E ++L+ + + + L +I + E+
Sbjct: 999 ELHQTQTEKKTIEEWADKYKH---ETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITE 1055
Query: 470 MNREKQKLEWKNKELELNMEINKQ 493
+K E K EL+LN E +
Sbjct: 1056 TMEKKLVEETKQLELDLNDERLRY 1079
Score = 55.1 bits (133), Expect = 1e-07
Identities = 37/266 (13%), Positives = 86/266 (32%), Gaps = 33/266 (12%)
Query: 211 SECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINR-MKAEMLELRAEA 269
+ + V + + +++ KA++ + + E
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 270 RSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTN 329
+ K ++RYK LE +++ +L++ +I + L+++
Sbjct: 907 KKLKIEARSVERYKKLHIGLE---NKIMQLQR------KIDEQNKEYKSLLEKMNNLEIT 957
Query: 330 LSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTI 389
S ++ + D+ L +SE+ +A + L L+ E +L +
Sbjct: 958 YSTETEKLR---------SDVERLR--------MSEEEAKNATNRVLSLQEEIAKLRKEL 1000
Query: 390 ESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI 449
E +K K + V +L+E L + E + EI +
Sbjct: 1001 HQTQT----EKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 450 NESYQNLELQIQVRNDELDNMNREKQ 475
E + L + + +L++ Q
Sbjct: 1057 ME--KKLVEETKQLELDLNDERLRYQ 1080
Score = 54.3 bits (131), Expect = 2e-07
Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 15/203 (7%)
Query: 698 LHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHS 757
++ Q +E+K LK R V+ K +++ + + ++ K
Sbjct: 891 VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 758 LSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANR 817
++NL +S EKL++D L+ + E + T + L+ E+A
Sbjct: 951 MNNLEITYSTET----------EKLRSDVERLRMSEE----EAKNATNRVLSLQEEIAKL 996
Query: 818 DDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDK 877
+ + + + + + + V+ L Q L T E H++ K ++
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 878 LN-NLHRQKEKLEEKIMEHYRKL 899
+ L + ++LE + + +
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRY 1079
Score = 42.8 bits (101), Expect = 6e-04
Identities = 22/137 (16%), Positives = 48/137 (35%), Gaps = 9/137 (6%)
Query: 196 TWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALI 255
++ E+ + + +L + + KLR L E + + + + I
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 256 NRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDA 315
+++ E+ + + E K +E +YK + L EL++ N + E +
Sbjct: 994 AKLRKELHQTQTEK---KTIEEWADKYKHETEQLV------SELKEQNTLLKTEKEELNR 1044
Query: 316 NAEKLQQLIEENTNLSL 332
+ I E L
Sbjct: 1045 RIHDQAKEITETMEKKL 1061
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 9e-07
Identities = 51/301 (16%), Positives = 89/301 (29%), Gaps = 130/301 (43%)
Query: 14 FLKG-PLVTWLLSCLSNPDRLSDYEDLAD------GIYI----HEVYLL------IDPEP 56
F +G ++ WL NP D + L I + H Y++ P
Sbjct: 209 FTQGLNILEWL----ENPSNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFTPG- 261
Query: 57 VHQSVVPSLRNASVRIKNFNTIV--------KNIKSLYEEELCQIVLVLPDVLIIGREPE 108
+ L+ A+ + +V + +S +
Sbjct: 262 ---ELRSYLKGATGHSQG---LVTAVAIAETDSWESFFVS-------------------- 295
Query: 109 SKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSL 168
++ + +L +G E + P S + +D SL
Sbjct: 296 VRKAIT-----VLFFIGVRCY----EAY-------PNTSLPPSI--------LED---SL 328
Query: 169 DNCEGVPTEVMVSNVKALAKERDRYLQTW------RLVEEKRNPSIG--NSECQHLAV-- 218
+N EGVP+ M+S + L +E+ +Q + L K+ I N ++L V
Sbjct: 329 ENNEGVPSP-MLS-ISNLTQEQ---VQDYVNKTNSHLPAGKQ-VEISLVNGA-KNLVVSG 381
Query: 219 ---ELADLKSKLRK--------Q-RLELEEK----------------SEHLTESRDELEH 250
L L LRK Q R+ E+ S L + D +
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 251 H 251
Sbjct: 442 D 442
Score = 49.3 bits (117), Expect = 6e-06
Identities = 54/315 (17%), Positives = 93/315 (29%), Gaps = 136/315 (43%)
Query: 162 QDIVLSLDNCEGVPTEVMVSNVKALAKE-RDRYLQTWRLVEEKRNPSIGNSECQHLAVEL 220
DIV+ +N P + + K R+ Y ++ E +
Sbjct: 1662 LDIVI--NN----PVNLTIHFGGEKGKRIRENYS---AMIFE----------------TI 1696
Query: 221 ADLKSKLRKQRLELEEKSEHLT--ESRDELE-----------HHKALINRMKAEML---- 263
D K K K E+ E S T + L KA +K++ L
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 264 ---------E---LRAEA--------------RSGKALESEIQRYKDKLTDLEYYKSRVE 297
E L + A R G ++ + R +
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPR---------------D 1800
Query: 298 ELRQDNR---AINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLA 354
EL + N AIN + + E LQ ++E + K + V V N
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVER------VGKRTGWL----VEIV--N--- 1845
Query: 355 SPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKK-- 412
N ++Q ++ +AL +++ +L K +K
Sbjct: 1846 -----YNVENQQYVAAGDLRAL-------------DTVTN---------VLNFIKLQKID 1878
Query: 413 --KL--SLQVEDLEE 423
+L SL +E++E
Sbjct: 1879 IIELQKSLSLEEVEG 1893
Score = 48.9 bits (116), Expect = 9e-06
Identities = 86/496 (17%), Positives = 171/496 (34%), Gaps = 130/496 (26%)
Query: 7 TSTEIE---EFLKGPLVTWLLSCLSNPDRLSDYEDLADGI--YIHEVYLL-IDPEPVHQS 60
+T E +FL +S L P ++ ++ + + YL D +H +
Sbjct: 54 PTTPAELVGKFLG------YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND---IH-A 103
Query: 61 VVPSLRNASVRIKNFNTIVKN---IKSLYEEELCQIVLVLPDVLIIGREPESK--QGLEN 115
+ A + +N T+VK IK+ +I+ P ++ S + +
Sbjct: 104 LA-----AKLLQENDTTLVKTKELIKNYIT---ARIMAKRP----FDKKSNSALFRAVGE 151
Query: 116 MKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTEN-QDIVLSLDNCEGV 174
L+ + G Q + F E +++L + D IK E +++ + + E V
Sbjct: 152 GNAQLVAIFGG--QGNTDDYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 175 PTEVMVSNVKALAKERDR-----YLQT----WRLVEEKRNPSIGNSECQHLAVELADLKS 225
T+ + N+ + YL + P IG + H V
Sbjct: 209 FTQGL--NILEWLENPSNTPDKDYLLSIPISC--------PLIGVIQLAHYVV------- 251
Query: 226 KLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDK 285
+ E +L + H + L+ A + AE S ++ +++
Sbjct: 252 TAKLLGFTPGELRSYLKGA---TGHSQGLVT---AVAI---AETDSWESFFVSVRKA--- 299
Query: 286 LTDL--------EYY--KSRVEELRQDNRAINE------IALERDANAEKLQQLIEENTN 329
+T L E Y S + +D+ NE +++ + E++Q + + TN
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNK-TN 357
Query: 330 LSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQA-KALRLELENKRLLST 388
L + + V +S V N G +L ++ Q+ L L L + S
Sbjct: 358 SHL--PAGKQV---EISLV--N-------GAKNLV--VSGPPQSLYGLNLTLRKAKAPSG 401
Query: 389 IESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQC-TEY-ESKFTKLETEI 446
++ RI + K K S + L +++ + + ++
Sbjct: 402 LDQ----------SRI-PFSERKLKFSNRF--L-----PVASPFHSHLLVPASDLINKDL 443
Query: 447 RKINESYQNLELQIQV 462
K N S+ ++QI V
Sbjct: 444 VKNNVSFNAKDIQIPV 459
Score = 44.3 bits (104), Expect = 2e-04
Identities = 23/196 (11%), Positives = 55/196 (28%), Gaps = 62/196 (31%)
Query: 754 ESHSLSNLRAEHSKLKDDFRI---LFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTEL 810
+++S L H L+ + F +L+ F L E
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK-----------------ILPEP 44
Query: 811 EGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEE 870
A D+ + L+ ++ ++ +E +
Sbjct: 45 TEGFAADDEPTTPAE-----------------------LVGKFLGYVSSLVEPSKVGQFD 81
Query: 871 E------KNF-SDKL--NNLH----------RQKEKLEEKIMEHYRKLDSCSSSSKKKSF 911
+ F + L N++H ++++++Y + K
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 912 GANLVRKVRKAGSELI 927
+ L R V + ++L+
Sbjct: 142 NSALFRAVGEGNAQLV 157
Score = 40.4 bits (94), Expect = 0.003
Identities = 91/611 (14%), Positives = 170/611 (27%), Gaps = 228/611 (37%)
Query: 294 SRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSK----SNQCVDNQSVSSVD 349
+L++ I E A + E T L+ K + V+ V D
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADD------EPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 350 ------LNDLASP--GSGD-NSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYES 400
L + + D ++L+ +L ++ K L+ + +
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK----TKELIK--------NYITA 129
Query: 401 GERILELEKEKKKL-SLQVEDLEETKRRLSAQC------TEYESKFTKLETEIRKINESY 453
RI+ KK S + E +L A +Y F E+R + ++Y
Sbjct: 130 --RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY---FE----ELRDLYQTY 180
Query: 454 QNL--ELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSN-NTEEINEYKTKLAN 510
L +L I+ + L + R E K + I + L N + +Y L +
Sbjct: 181 HVLVGDL-IKFSAETLSELIRTTLDAE---KVFTQGLNILEWLENPSNTPDKDY---LLS 233
Query: 511 CEKEIKKCKEALESKAESLDKLTNKLESMEKEHVS-----LTKQIEDQENELKKYNDLKR 565
+S + Q+
Sbjct: 234 IP-------------------------------ISCPLIGVI-QL--------------- 246
Query: 566 EMDELDSKYQVDKNTLSVLQNDLVNEKLK--TTHLKNSLDKLGLAM-DDQTDAENILEKI 622
+ Y V L +L LK T H + + + +A D + K
Sbjct: 247 ------AHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 623 LS------------------SPEILNAVKKKLGVEHFNDESS-------LNNAKLEVDLK 657
++ P IL + +E+ S L +++ +
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSIL-----EDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 658 TSQSQISSLTSQHTALQLANS--QLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKV 715
+ S + + + + L N L+++ + L
Sbjct: 355 KTNSHLPA--GKQVEISLVNGAKNLVVSGPPQSLY------------------------G 388
Query: 716 LKSTLRDVKNENKTVKEQ----YSQLKVSYESLQAEMEQLKFESHSLSNLRA---EHSKL 768
L TLR K + +Q +S+ K+ + +F L HS L
Sbjct: 389 LNLTLRKAKAPSG--LDQSRIPFSERKLKF--------SNRF-------LPVASPFHSHL 431
Query: 769 KDDFRILFTANEKLKADFRALQEE-------------HKGNHMEKRKLTLSLTELEGELA 815
L A++ + D G+ + R L+ S++E +
Sbjct: 432 ------LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISE---RIV 480
Query: 816 NRDDAISALSV 826
D I L V
Sbjct: 481 ---DCIIRLPV 488
Score = 30.8 bits (69), Expect = 2.7
Identities = 31/189 (16%), Positives = 57/189 (30%), Gaps = 84/189 (44%)
Query: 699 HEQLNM---EYES--VVKEI-----KVLKSTL----RDVKNEN---KTVK---EQYSQLK 738
EQ M Y++ +++ K T D+ N T+ E+ +++
Sbjct: 1627 QEQ-GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 739 VSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKL-KADFRALQEEHKGNH 797
+Y ++ FE+ L+ E +I NE FR+ +
Sbjct: 1686 ENYSAM-------IFETIVDGKLKTE--------KIFKEINEHSTSYTFRSEKGL----- 1725
Query: 798 MEKRKLTLSLTE----------------LEGE-LANRDDAI--------SALS----VQL 828
LS T+ L+ + L D +AL+ V +
Sbjct: 1726 -------LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-M 1777
Query: 829 SKYQNKLED 837
S +E
Sbjct: 1778 S-----IES 1781
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 45.9 bits (108), Expect = 2e-05
Identities = 21/157 (13%), Positives = 61/157 (38%), Gaps = 4/157 (2%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
I LE ++ ++ K + E + L+ ++ K ++ Q+ +I
Sbjct: 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78
Query: 463 RNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEAL 522
++ + E++ L N E + ++ + EI + ++ ++ + K+ +
Sbjct: 79 IQKKMSEIKSERE-LRSLNIEED---IAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134
Query: 523 ESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
+ +L + +E+ K + I ++ +L +
Sbjct: 135 LELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171
Score = 35.5 bits (81), Expect = 0.056
Identities = 27/186 (14%), Positives = 73/186 (39%), Gaps = 8/186 (4%)
Query: 458 LQIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINEYKTKLANCEKEIK 516
++I + E+D++ ++ + + E NK + N EE K +++ E+ ++
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70
Query: 517 KCKEALESKAESLDKLTNK--LESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574
+ S + + ++ ++ L S+ E ++ E++ +L+ E+ K
Sbjct: 71 DTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIE---NLQNEIKRKSEKQ 127
Query: 575 QVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTD--AENILEKILSSPEILNAV 632
+ K + L+ + + + ++ + + + + E KI S E +
Sbjct: 128 EDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRW 187
Query: 633 KKKLGV 638
K +
Sbjct: 188 AKNTSI 193
Score = 28.9 bits (64), Expect = 7.3
Identities = 16/109 (14%), Positives = 39/109 (35%)
Query: 218 VELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALES 277
+E++ L ++ + EK + L ++ ++ E I ++ E L L+ + +
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70
Query: 278 EIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEE 326
+ + ELR N + + +++ L E
Sbjct: 71 DTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNE 119
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 45.3 bits (106), Expect = 9e-05
Identities = 48/381 (12%), Positives = 122/381 (32%), Gaps = 11/381 (2%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGK 273
HLA + S E + L KAL+ + +A +L A +
Sbjct: 369 DHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLSEIKALLKKHEAFESDLAAHQDRVE 428
Query: 274 ALESEIQRYKD-KLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSL 332
+ + Q + D +R +++ + + +R E+ ++L+E L L
Sbjct: 429 QIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYL 488
Query: 333 LSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL 392
N + + DL Q ++A + + + I +
Sbjct: 489 EYAKRAAPFNNWMEGA-MEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGI 547
Query: 393 HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINES 452
H + + ++ +++ + + L E + ++
Sbjct: 548 HNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQA---LMEEHARQQQN 604
Query: 453 YQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ-LSNNTEEINEYKTKLANC 511
+ + N + + +++ + E+ +E L + I YK K+
Sbjct: 605 ERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQL 664
Query: 512 EKEIKKCKEALESKA----ESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREM 567
E + ++ +EAL +++ + E + ++E+Q + +M
Sbjct: 665 EGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQM 724
Query: 568 DELDSKY-QVDKNTLSVLQND 587
+E + + D+ ++ +
Sbjct: 725 NEFRASFNHFDRKKTGMMDCE 745
Score = 36.8 bits (84), Expect = 0.035
Identities = 44/403 (10%), Positives = 130/403 (32%), Gaps = 18/403 (4%)
Query: 365 EQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKL----SLQVED 420
QL + +L L N+ E + + + + EK ++ ++E
Sbjct: 308 CQLEINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLER 367
Query: 421 LEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK 480
L+ + + + +ES E +++ + L +I+ + + + + +
Sbjct: 368 LDHLAEKFRQKASIHESWTDGKEAMLQQKDYETATLS-EIKALLKKHEAFESDLAAHQDR 426
Query: 481 NKEL-ELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
+++ + E+N+ ++ +N K+ + + + E +KL ++ +
Sbjct: 427 VEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQL 486
Query: 540 EKEHVSLTKQIEDQ-ENELKKYNDLKREMDELDSKYQVDK-NTLSVLQNDLVNEKLKTTH 597
E+ + E ++ D + + D E+
Sbjct: 487 YLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILG 546
Query: 598 LKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLK 657
+ N + K+ N I + V + +A+ + + +
Sbjct: 547 IHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNER 606
Query: 658 TSQSQISSLTSQHTALQLANSQL--ILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKV 715
+ + +Q ++ I + L+DQ+ + +E+ + Y+ + +++
Sbjct: 607 LRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEG 666
Query: 716 LKSTL--------RDVKNENKTVKEQYSQLKVSYESLQAEMEQ 750
+ + + ++ + QL + E+E
Sbjct: 667 DHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVEN 709
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 45.0 bits (107), Expect = 1e-04
Identities = 21/190 (11%), Positives = 48/190 (25%), Gaps = 5/190 (2%)
Query: 711 KEIKVLKSTLRDVKNENKTVK--EQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKL 768
+E+ L++ ++ + + +K + ++ + + L+ + K
Sbjct: 821 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 880
Query: 769 KDDFRILFTANEKLKADFRALQEEHKG--NHMEKRKLTLSLTELEGELANRDDAISALSV 826
+ +L ++ E ++ L D +L
Sbjct: 881 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 940
Query: 827 QL-SKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQK 885
Q S + L V L + E KN ++
Sbjct: 941 QSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKI 1000
Query: 886 EKLEEKIMEH 895
E L H
Sbjct: 1001 EDLHHHHHHH 1010
Score = 39.6 bits (93), Expect = 0.005
Identities = 27/200 (13%), Positives = 66/200 (33%), Gaps = 17/200 (8%)
Query: 252 KALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIAL 311
+A+ N ++ ++ ++ E A + + + + E LR + + +IA+
Sbjct: 827 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAV 886
Query: 312 ERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSA 371
L++L T S+ SN+ D+ + L +L E
Sbjct: 887 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNL-----------EAFDGEC 935
Query: 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ 431
Q+ + + +L+ + L+ N E++ + Q ++ +
Sbjct: 936 QSLEGQSNSDLLSILAQLTELNYN------GVPELTERKDTFFAQQWTGVKSSAETYKNT 989
Query: 432 CTEYESKFTKLETEIRKINE 451
+ K+E +
Sbjct: 990 LLAELERLQKIEDLHHHHHH 1009
Score = 37.7 bits (88), Expect = 0.023
Identities = 31/196 (15%), Positives = 72/196 (36%), Gaps = 19/196 (9%)
Query: 224 KSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLE-LRAEARSGKALESEIQRY 282
+ + + ++ E + +E++ + + + + E E LR E + K + +Q+Y
Sbjct: 832 SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 891
Query: 283 KDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNL-SLLSKSNQCVD 341
L LE + + N + I + KL+ L + SL +SN +
Sbjct: 892 NRILKKLENWATTKSVYLGSNETGDSITAVQ----AKLKNLEAFDGECQSLEGQSNSDLL 947
Query: 342 NQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESG 401
+ +LN +G L+E+ + + ++ + +T+ + E
Sbjct: 948 SILAQLTELNY-----NGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELE------- 995
Query: 402 ERILELEKEKKKLSLQ 417
R+ ++E
Sbjct: 996 -RLQKIEDLHHHHHHH 1010
Score = 35.0 bits (81), Expect = 0.13
Identities = 15/154 (9%), Positives = 42/154 (27%), Gaps = 3/154 (1%)
Query: 177 EVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEE 236
+ S ++ +E L+ ++K + +E + E +
Sbjct: 857 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916
Query: 237 KSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRV 296
+ LE ++ + L +LT+ +
Sbjct: 917 SITAVQAKLKNLEAFDGECQSLEGQSNSDLLSIL--AQLTELNYNGVPELTERKD-TFFA 973
Query: 297 EELRQDNRAINEIALERDANAEKLQQLIEENTNL 330
++ + A E+LQ++ + + +
Sbjct: 974 QQWTGVKSSAETYKNTLLAELERLQKIEDLHHHH 1007
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 39.1 bits (91), Expect = 0.009
Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 8/162 (4%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
E+ +LE+E+ L++ ++ L +T AQ + + + E+ NE Q+
Sbjct: 1910 EKRDQLEEEQLHLNIGLKKLRDT----EAQVKDLQVSLAQKNRELDVKNEQANQKLKQMV 1965
Query: 462 VRNDELDNMN----REKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKK 517
+ + +L+ +NKE+ + E + ++ E +
Sbjct: 1966 QDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANE 2025
Query: 518 CKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
K + ++ L + + ++E+ +L ++ E + E K
Sbjct: 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067
Score = 37.2 bits (86), Expect = 0.030
Identities = 27/237 (11%), Positives = 79/237 (33%), Gaps = 18/237 (7%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE-ARSG 272
+H + + + ++R +LEE+ HL +L +A + ++ + + E
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954
Query: 273 KALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNL-- 330
+ ++++ E + EL+ N+ + A + E L
Sbjct: 1955 EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014
Query: 331 SLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIE 390
+ N + + + + + + E+ + + +++ E+ ++ + ++
Sbjct: 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETE-QIKTESSKVKNKVD 2073
Query: 391 SLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRL------SAQCTEYESKFTK 441
S + L E+ + Q E+ + ++ Y F +
Sbjct: 2074 R--------SIALLDNLNSERGRWEQQSENFNTQMSTVVGDVVLASAFLAYIGFFDQ 2122
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 38.8 bits (89), Expect = 0.010
Identities = 39/317 (12%), Positives = 95/317 (29%), Gaps = 19/317 (5%)
Query: 290 EYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSV- 348
+ + ++R+ N + + A ++ + + S+L+KS ++ + +V
Sbjct: 382 DLVNRSIAQMREATTLANGVLASLNLPAA-IEDVSGDTVPQSILTKSRSVIEQGGIQTVD 440
Query: 349 ----DLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENA-FYESGER 403
+L +L S +L +A L + K S G
Sbjct: 441 QLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTN 500
Query: 404 ILE-LEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
L+K + E + + + C + + + ++
Sbjct: 501 FRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKS 560
Query: 463 RNDELDNMNREKQKLEWKNKELELNMEINK-QLSNNTEEINEYKTKLANCEKEIKKCKEA 521
LD + +E++ LE K + +M INE + ++
Sbjct: 561 LLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTK 620
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQ----------IEDQENELKKYNDLKREMDELD 571
++ + + L ++ +E + + +++ + +L + E
Sbjct: 621 VQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGT 680
Query: 572 SKYQVDKNTLSVLQNDL 588
Y L QN
Sbjct: 681 KFYNELTEILVRFQNKC 697
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 38.5 bits (90), Expect = 0.010
Identities = 11/133 (8%), Positives = 41/133 (30%), Gaps = 4/133 (3%)
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
E + + ++ ++ + + + + +++ E+ + + E + +
Sbjct: 136 ENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKS 195
Query: 470 MNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESL 529
+ + EL+ ++ + Y E + E
Sbjct: 196 ATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEA----EGRFEVINNETEQLKAEE 251
Query: 530 DKLTNKLESMEKE 542
K+ N+ ++K+
Sbjct: 252 KKILNQFLKIKKK 264
Score = 36.6 bits (85), Expect = 0.037
Identities = 14/111 (12%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
++ + ++ + + E+ + + E E K I ++ E + + E
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNR---RRIHGE 209
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERD---ANAEKLQQLIEE 326
++ YK ++ + R + I E + A +K+ +
Sbjct: 210 LKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLK 260
Score = 33.9 bits (78), Expect = 0.29
Identities = 17/161 (10%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
Query: 447 RKI---NESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINE 503
R I ++ ++ + D + E ++ KN L ++ + + + E++
Sbjct: 109 RIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKN-FLVFQGDVEQIAAQSPVELSR 167
Query: 504 YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDL 563
+++ + K+ +E E + T +++ + + +++ ++ +
Sbjct: 168 MFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRR----IHGELKTYKSPGLEVLFQ 223
Query: 564 KREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
D + + ++ L E+ K + + K
Sbjct: 224 GPRGSRYD-EAEGRFEVINNETEQLKAEEKKILNQFLKIKK 263
Score = 32.7 bits (75), Expect = 0.51
Identities = 15/95 (15%), Positives = 35/95 (36%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESE 278
K + + + ++E+ S+ TES + K+ LE+ + G +
Sbjct: 174 GSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEA 233
Query: 279 IQRYKDKLTDLEYYKSRVEELRQDNRAINEIALER 313
R++ + E K+ +++ I + E
Sbjct: 234 EGRFEVINNETEQLKAEEKKILNQFLKIKKKRKEL 268
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 38.0 bits (88), Expect = 0.015
Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 457 ELQIQVRNDELDNMNREKQKLEWKNKELELN-----MEINKQLSNNTEEINEYKTKLANC 511
E IQ + EL++ R + N +++ E+ ++ E + +
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 512 EKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELD 571
K + + L + + +L L +KE T E + + ++D L
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATAL---QKEIGERT------HAETVMVKEYRDKIDALK 202
Query: 572 SKYQVDKNTL 581
+ +V+++ +
Sbjct: 203 NAIEVERDGM 212
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 35.7 bits (82), Expect = 0.027
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
+ +++ EL + L +V L++ R + E K +LE E++ + + ++LE
Sbjct: 4 QLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEA 63
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINEYKTKLANCEKEIKK 517
Q + + + D E + L K KE E E + ++ + I++ + +L + + K
Sbjct: 64 QAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKA 123
Query: 518 CKEALESKAESLDKLTNKLESMEKEHVSLTK 548
E ++ + +++L +K +E E L K
Sbjct: 124 ISEEMKQLEDKVEELLSKNYHLENEVARLKK 154
Score = 28.0 bits (62), Expect = 9.8
Identities = 21/103 (20%), Positives = 47/103 (45%)
Query: 399 ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLEL 458
+ LE + +K S + + EE + LS + E E++ E + K+ +S +LE
Sbjct: 53 TVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLED 112
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEI 501
++ + + ++ E ++LE K +EL + +++
Sbjct: 113 ELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLKKL 155
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 37.2 bits (84), Expect = 0.030
Identities = 27/229 (11%), Positives = 73/229 (31%), Gaps = 11/229 (4%)
Query: 493 QLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH--------V 544
++ ++ Y+T+LA +K K A E+ + + L +
Sbjct: 3 NEADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKA 62
Query: 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
++ + +L KY + Y+ ++ ++ +L K + +L +
Sbjct: 63 DYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQ 122
Query: 605 LGLAMDDQTDAENILEKI--LSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQ 662
L D + +A L ++ K + D+ L L++ +
Sbjct: 123 -NLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDLDITNLEQSND 181
Query: 663 ISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVK 711
++S + ++N ++ + + + Y ++
Sbjct: 182 VASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLERGQSATATYTNLQN 230
Score = 34.1 bits (76), Expect = 0.24
Identities = 23/180 (12%), Positives = 63/180 (35%)
Query: 655 DLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIK 714
+T +++ + A A A + L + + K + +YE+ + + +
Sbjct: 13 AYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQ 72
Query: 715 VLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRI 774
+ + + + Y + S ++ AE+E+ K E +L+ A++ +
Sbjct: 73 ADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNA 132
Query: 775 LFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNK 834
+ K + ++ K K + +L+ + + ++ + Y N
Sbjct: 133 NLSLTTDGKFLKASAVDDAFSKSTSKAKYDQKILQLDDLDITNLEQSNDVASSMELYGNF 192
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 36.1 bits (82), Expect = 0.064
Identities = 27/189 (14%), Positives = 74/189 (39%), Gaps = 5/189 (2%)
Query: 372 QAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQ 431
+A + R + + S +E + Y ++ + L + + +
Sbjct: 401 EASSDRCSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEI 460
Query: 432 CTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEIN 491
Y + I + +++ E +I+V + ++ + L ++ E ME
Sbjct: 461 LQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMME-- 518
Query: 492 KQLSNNTEEINEYKTKLAN-CEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQI 550
++ + E + + K+ N + +K+ + L K + ++L E +KE + +I
Sbjct: 519 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK--EGFQKESRIMKNEI 576
Query: 551 EDQENELKK 559
+D + ++++
Sbjct: 577 QDLQTKMRR 585
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 33.7 bits (77), Expect = 0.087
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE 499
+ E E+ + E + L+ ++ + + L + +L+L ++ + + E
Sbjct: 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAE 68
Query: 500 EINEYKTKL-ANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELK 558
E + K E ++K+ + LE + E +LT K +E E L + I+D E L
Sbjct: 69 ERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128
Query: 559 K 559
K
Sbjct: 129 K 129
Score = 27.9 bits (62), Expect = 7.4
Identities = 21/95 (22%), Positives = 39/95 (41%)
Query: 406 ELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRND 465
E EKE + + L+E + A+ E E K L E + Q + + +
Sbjct: 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEE 69
Query: 466 ELDNMNREKQKLEWKNKELELNMEINKQLSNNTEE 500
D + + K +LE K KE+ +E ++++
Sbjct: 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA 104
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 35.3 bits (81), Expect = 0.100
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 12/137 (8%)
Query: 213 CQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSG 272
C +A + + LE+E + T S +E+ LI +K +
Sbjct: 23 CG-IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEY---LIQHIKTIYPSEK------ 72
Query: 273 KALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSL 332
+ L I++ K + R E + N I D + ++ + ++
Sbjct: 73 QTLPQSIEQLTQKSKKIIEEIIRYENTILAHE--NTIQQLTDMHIMNSNKITQLKQKIAQ 130
Query: 333 LSKSNQCVDNQSVSSVD 349
L Q + +
Sbjct: 131 LESHCQEPCKDTAEIQE 147
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 35.2 bits (80), Expect = 0.10
Identities = 23/180 (12%), Positives = 66/180 (36%), Gaps = 1/180 (0%)
Query: 417 QVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQK 476
+ ++L+ R + + E + LE + + + L+ + N + +++Q
Sbjct: 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQL 62
Query: 477 LEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKL 536
L K L L+ + + + E +N + + + + A L
Sbjct: 63 L-LKKMYLMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACL 121
Query: 537 ESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTT 596
+ ++ + + ++ +LKK +L+++ +K L L + ++++
Sbjct: 122 DQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSS 181
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 35.4 bits (82), Expect = 0.11
Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 19/193 (9%)
Query: 252 KALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIAL 311
+A+ N ++ ++ ++ E A + + + + E LR + + +IA+
Sbjct: 819 EAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAV 878
Query: 312 ERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSA 371
L++L T S+ SN+ D+ + L +L
Sbjct: 879 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNL------------------ 920
Query: 372 QAKALRLELENKRLLSTIESLHENAFYESGERILEL-EKEKKKLSLQVEDLEETKRRLSA 430
+A + + S + S+ + + EL E++ + Q ++ +
Sbjct: 921 EAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKN 980
Query: 431 QCTEYESKFTKLE 443
+ K+E
Sbjct: 981 TLLAELERLQKIE 993
Score = 33.9 bits (78), Expect = 0.32
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 11/186 (5%)
Query: 711 KEIKVLKSTLRDVKNENKTVK--EQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKL 768
+E+ L++ ++ + + +K + ++ + + L+ + K
Sbjct: 813 QEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKR 872
Query: 769 KDDFRILFTANEKLKADFRALQEEHKGNHMEK------RKLTLSLTELEGELANRDDAIS 822
+ +L ++ + L LE
Sbjct: 873 QKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEG 932
Query: 823 ALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLH 882
+ L +L V L + E KN
Sbjct: 933 QSNSDLLSILAQLT---ELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERL 989
Query: 883 RQKEKL 888
++ E L
Sbjct: 990 QKIEDL 995
Score = 33.1 bits (76), Expect = 0.57
Identities = 17/150 (11%), Positives = 52/150 (34%)
Query: 174 VPTEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLE 233
+ + S AL K + + R+ +++ + + ++ + + + L
Sbjct: 843 LTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLG 902
Query: 234 LEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYK 293
E + +T + +L++ +A ++ + ++ S A +E+
Sbjct: 903 SNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDT 962
Query: 294 SRVEELRQDNRAINEIALERDANAEKLQQL 323
++ + A E+LQ++
Sbjct: 963 FFAQQWTGVKSSAETYKNTLLAELERLQKI 992
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.12
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 9/34 (26%)
Query: 799 EKRKLTLSLTELEGEL---ANRDDAISALSVQLS 829
EK+ +L +L+ L A DD+ AL+++ +
Sbjct: 18 EKQ----ALKKLQASLKLYA--DDSAPALAIKAT 45
Score = 32.6 bits (73), Expect = 0.26
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 8/31 (25%)
Query: 726 ENKTVKEQYSQLKVSYE-------SLQAEME 749
E + +K+ + LK+ Y +++A ME
Sbjct: 18 EKQALKKLQASLKL-YADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 14/33 (42%)
Query: 540 EKEHVSLTKQIEDQENELKKYNDLKREMDELDS 572
EK+ + K+++ LK Y D DS
Sbjct: 18 EKQAL---KKLQ---ASLKLYAD--------DS 36
Score = 30.3 bits (67), Expect = 1.6
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 18/44 (40%)
Query: 512 EK-EIKKCKEALESKAESLDKLTNKL---ESMEKEHVSLTKQIE 551
EK +KK L++ SL KL +S +++ +E
Sbjct: 18 EKQALKK----LQA---SL-----KLYADDSAPA--LAIKATME 47
Score = 29.9 bits (66), Expect = 2.3
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 21/50 (42%)
Query: 591 EKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEI-LNAVKKKLGVE 639
EK L+ SL KL A D S+P + + A +E
Sbjct: 18 EKQALKKLQASL-KL-YADD-------------SAPALAIKAT-----ME 47
Score = 29.9 bits (66), Expect = 2.4
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 268 EARSGKALESEIQRYK-DKLTDLEYYKSRVE 297
E ++ K L++ ++ Y D L K+ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA-IKATME 47
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.4 bits (77), Expect = 0.17
Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 12/184 (6%)
Query: 439 FTKLETEIRKINESYQNL------ELQIQVRNDELDNMNREKQKLEWKNKELELNME-IN 491
+ +E +++E + + + +++N + + +++ + KE E
Sbjct: 83 WMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQ 142
Query: 492 KQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIE 551
K + +E+ K K+ K A+ +A S + E ++K + K +
Sbjct: 143 KPWAKKLKEVEAAKKAH---HAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQ 199
Query: 552 DQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDD 611
D +KY +E+D+ +Y + + E+ + + L ++ +D
Sbjct: 200 DVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQF--EEKRLRFFREVLLEVQKHLDL 257
Query: 612 QTDA 615
A
Sbjct: 258 SNVA 261
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.19
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 23/147 (15%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKI---- 449
YE R +LE+ K + + A+ E+ + K E E+R++
Sbjct: 291 HTRHYEL-YRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQR 349
Query: 450 ----NESYQNLELQIQVRNDEL-DNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEY 504
+ E ++ + D L EK+KLE K K L+ +E+N +
Sbjct: 350 VKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLD-------------DEVNAF 396
Query: 505 KTKLANCEKEIKKCKEALESKAESLDK 531
K + E + +A S+ DK
Sbjct: 397 KQRKTAAELLQSQGSQAGGSQTLKRDK 423
Score = 33.6 bits (76), Expect = 0.32
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 350 LNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEK 409
L ++ + +S L + +AK E ++ + + E + E EK
Sbjct: 303 LEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK 362
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
E E + K+ + + E K L+ E+ + EL + +
Sbjct: 363 E------LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGS 416
Query: 470 MNREKQK 476
++ K
Sbjct: 417 QTLKRDK 423
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 34.4 bits (78), Expect = 0.21
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 2/131 (1%)
Query: 827 QLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKE 886
+L E++ +KL + + QY E L + + + L +++
Sbjct: 23 ELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQKQV 82
Query: 887 KLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSELINKSRKSWHEDSLRKDRGTD 946
LE + + L +K ++ +RK + +++ W G
Sbjct: 83 SLETWLQREAQTLQQYRVELAEKH--QKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGP 140
Query: 947 SDTSLEDTLEW 957
+ SL+ W
Sbjct: 141 PEGSLDVLQSW 151
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 34.1 bits (77), Expect = 0.25
Identities = 30/236 (12%), Positives = 81/236 (34%), Gaps = 7/236 (2%)
Query: 363 LSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLE 422
L + Q +++ + L + ENA + + + + + ++L+
Sbjct: 86 SKRNLQDNFQEDPIQMSMIIYSCLKEERKILENA--QRFNQAQSGNIQSTVMLDKQKELD 143
Query: 423 ETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN-MNREKQKLEWKN 481
R + + E + LE + + + L+ + N + +E+ L+
Sbjct: 144 SKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMY 203
Query: 482 KELE-LNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESME 540
L+ E+ ++ + L N E K ++ A L+ ++
Sbjct: 204 LMLDNKRKEVVHKIIELLNVTELTQNALINDELVEWKRRQQS---ACIGGPPNACLDQLQ 260
Query: 541 KEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTT 596
+ + ++ +LKK +L+++ +K L L + ++++
Sbjct: 261 NWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLFQQLIQSS 316
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.32
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 42/105 (40%)
Query: 226 KLRK----QRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQR 281
+RK QR L+E D K E R +A+ K LE
Sbjct: 86 SIRKWREEQRKRLQEL--------DAAS---------KVMEQEWREKAK--KDLE----- 121
Query: 282 YKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEE 326
E+ + + E++ + N+ N R A+ QQ +
Sbjct: 122 --------EWNQRQSEQVEK-NKINN-----RIADKAFYQQPDAD 152
Score = 30.5 bits (68), Expect = 1.6
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 18/97 (18%)
Query: 371 AQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSA 430
AQA L E E +I E E +R+ EL+ K + + E E+ K+ L
Sbjct: 75 AQADRLTQEPE------SIRKWRE----EQRKRLQELDAASKVM--EQEWREKAKKDLEE 122
Query: 431 QCTEYESKFTKLETEIRKINESYQNLELQIQVRNDEL 467
+ K + R ++++ Q + ++
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAF------YQQPDADI 153
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 33.7 bits (78), Expect = 0.37
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 403 RILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
+ L+LE E+ +L+ E +++ RL +E EI K+ E L + +
Sbjct: 409 KKLQLEIER--EALKKEKDPDSQERLK-----------AIEAEIAKLTEEIAKLRAEWER 455
Query: 463 RNDELDNMNREKQKLEWKNKELE 485
+ L + + +L+ +E+E
Sbjct: 456 EREILRKLREAQHRLDEVRREIE 478
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 33.3 bits (76), Expect = 0.37
Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 12/142 (8%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
LR + R + E ++ E+ K+ + + Q + L + R + +
Sbjct: 113 AELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVR 172
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ 493
E KL E K+ + + + + W N + +N +++
Sbjct: 173 TQERLIMKLCVEQCKMP------------KKNFITLFTGNETSDTWFNAAIAMNKPWSEK 220
Query: 494 LSNNTEEINEYKTKLANCEKEI 515
L + +EE++ KL E+E
Sbjct: 221 LHDVSEEVHRALQKLQQIEEET 242
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.49
Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 374 KALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCT 433
+ ++ + + + E + + + LEKEK+KL+ VE L++ +R
Sbjct: 170 EIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFG---- 225
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELN 487
+ E + I + + + ++ + ++ N L ++
Sbjct: 226 RNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTID 279
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein,
progenitor toxin complex, VHH bound interlocked complex;
HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Length = 1196
Score = 32.9 bits (74), Expect = 0.60
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 8/138 (5%)
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKE 514
+L + N + + N L N +++ E ++N ++ + A C E
Sbjct: 705 QKKLSYLIGNSNISSDNLALMNLTTTNTLRDISNESQIAMNN----VDSFLNNAAICVFE 760
Query: 515 IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574
+++ N + KE + I + E ++ +D
Sbjct: 761 ----SNIYPKFISFMEQCINNINIKTKEFIQKCTNINEDEKLQLINQNVFNSLDFEFLNI 816
Query: 575 QVDKNTLSVLQNDLVNEK 592
Q K+ S L+ E+
Sbjct: 817 QNMKSLFSSETALLIKEE 834
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 32.5 bits (75), Expect = 0.70
Identities = 14/127 (11%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 411 KKKLSLQV----EDLEETKRRLS--AQCTEYESKFTKLETEIRKINESYQNLELQIQVRN 464
+++ + + +EE ++ + K + + LE + V
Sbjct: 741 AQEVRVYLEGETAPVEENLEVFRFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDV-E 799
Query: 465 DELDNMNREKQKLEWKNKELELNMEINKQLSNNT-------EEINEYKTKLANCEKEIKK 517
+ + ++L E ++L++ E + + +L ++ ++
Sbjct: 800 EWRRRQEKRLKELL---ALAE---RSQRKLASPGFREKAPKEVVEAEEARLKENLEQAER 853
Query: 518 CKEALES 524
+EAL
Sbjct: 854 IREALSQ 860
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 31.7 bits (72), Expect = 1.0
Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 16/125 (12%)
Query: 216 LAVELADLKSKLRKQRLELEEKSEHLTESRDELEH----HKALINRMKAEMLELR----- 266
L L D L QR L EK + + L+ K I E
Sbjct: 70 LDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSN 129
Query: 267 -----AEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQ 321
A G + + + +++ + + E + R + + +E+ Q
Sbjct: 130 PYEEEARKLWGDKVVEKANEKVNNMSE-KEQLTLKESFDAEFRHLAS-VRKLTPESEEAQ 187
Query: 322 QLIEE 326
I+
Sbjct: 188 LEIDH 192
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 31.3 bits (71), Expect = 1.3
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 384 RLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLE 443
++L I E + I L++ + ++ +L+E +L AQC E ++
Sbjct: 1 KMLEEIMKY-EASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIH 59
Score = 29.8 bits (67), Expect = 4.5
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLE 457
E I++ E + L+E + + + K +LE + ++ + +
Sbjct: 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIH 59
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 31.5 bits (72), Expect = 1.3
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 11/140 (7%)
Query: 262 MLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDA--NAEK 319
M E+ + L + L D + K R+EE+ N + D E+
Sbjct: 1 MFEINPVNNRIQDLTERSDVLRGYL-DYDAKKERLEEV-------NAELEQPDVWNEPER 52
Query: 320 LQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLE 379
Q L +E ++L + + + L +LA + + +E + + +
Sbjct: 53 AQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQ 112
Query: 380 LENKRLLSTIESLHENAFYE 399
LE +R+ S E + + +
Sbjct: 113 LEFRRMFSG-EYDSADCYLD 131
Score = 31.5 bits (72), Expect = 1.4
Identities = 13/79 (16%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 500 EINEYKTKLANCEKEIKKCKEAL--ESKAESLDKLTNKLESME-----KEHVSLTKQIED 552
EIN ++ + + + L ++K E L+++ +LE + + +L K+
Sbjct: 3 EINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSS 62
Query: 553 QENELKKYNDLKREMDELD 571
E + + +K+ ++++
Sbjct: 63 LEAVVDTLDQMKQGLEDVS 81
Score = 29.2 bits (66), Expect = 6.7
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 365 EQLTSSAQAKALRLELENK--RLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLE 422
+ LT + L+ + K RL L + + ER L KE+ L V+ L+
Sbjct: 12 QDLTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLD 71
Query: 423 ETKRRLS--------AQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMN 471
+ K+ L A + E F + E+ + E LE + + E D+ +
Sbjct: 72 QMKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMF-SGEYDSAD 127
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 31.6 bits (71), Expect = 1.3
Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 32/168 (19%)
Query: 421 LEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWK 480
L R ++ TKL + R I E ++ NR K+ L
Sbjct: 625 LSYYGLRKEWLVGMLGAESTKLNNQARFILE----------KIQGKITIENRSKKDLIQM 674
Query: 481 NKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALES-------------KAE 527
+ + K E+ E + E
Sbjct: 675 LVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKE 734
Query: 528 SLDKLTNKLESMEKEHVSLTKQ---------IEDQENELKKYNDLKRE 566
+++L + ++ +E L ++ + EL K +RE
Sbjct: 735 KVEELIKQRDAKGREVNDLKRKSPSDLWKEDLAAFVEELDKVESQERE 782
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 31.3 bits (72), Expect = 1.4
Identities = 15/72 (20%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK---FTKLETEIRKINESYQNLEL 458
+++LEL+K ++++ ++E L + +LS + + + + T+++ ++++ E LE
Sbjct: 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEE 89
Query: 459 QIQVRNDELDNM 470
+++ +EL N
Sbjct: 90 ELRKVEEELKNT 101
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex,
MERR-family transcription activator, MU binding protein;
HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3
d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A*
3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A*
3d6y_A* 1bow_A 2bow_A*
Length = 278
Score = 31.3 bits (71), Expect = 1.4
Identities = 11/98 (11%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLE---LRAEAR 270
+ +E+ +L + +Q ++ EK + L+ + K + R +
Sbjct: 71 KAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQMEYPALGEVFVLDEE 130
Query: 271 SGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINE 308
+ +++E + + Y + + + N
Sbjct: 131 EIRIIQTEAEGIGPENVLNASYSKLKKFIESADGFTNN 168
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 31.1 bits (71), Expect = 1.9
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 716 LKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLR 762
+ S + E ++++ +L E AE+E K + + R
Sbjct: 1 MGSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMER 47
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.4 bits (71), Expect = 2.0
Identities = 40/305 (13%), Positives = 95/305 (31%), Gaps = 23/305 (7%)
Query: 434 EYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQ 493
EY FT T K + + +++ R + ++ EK+K ++ E N
Sbjct: 735 EYMEGFTDAATGEAK--RGFMTVVSELEQRFPDPTSIESEKEKKDFVKLFGEYLRAEN-I 791
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQ 553
L N E + + + K E + + + +
Sbjct: 792 LQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPAD--------RKI 843
Query: 554 ENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTT-----HLKNSLDKLGLA 608
++ YND++ + +K+T + LK+ ++ + +
Sbjct: 844 QDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQ 903
Query: 609 M-DDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLT 667
E + I SS K+ L V F +++L++ + + + +
Sbjct: 904 NKGKGEMIEEVKRLIRSSLGNRA--KEGL-VVDFIQQTNLDDLPDKASIIDAFFTFAQRE 960
Query: 668 SQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNEN 727
Q A L + + + + + + + E + + + L K +
Sbjct: 961 QQREAEALIKEENL---NEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKK 1017
Query: 728 KTVKE 732
+ V +
Sbjct: 1018 QAVFQ 1022
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 30.9 bits (69), Expect = 2.0
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 492 KQLSNNTEEINEYKTKLAN------CEKEIKKCKEALESKAESLDKLTNKLES-MEKEHV 544
E ++E ++ E+ + A + + E K
Sbjct: 82 HAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQK 141
Query: 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
K++++ E K Y+ +++ ++ K S+ Q L + + +K
Sbjct: 142 PWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEK 201
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET:
P3S ADP; 3.50A {Bacteroides fragilis}
Length = 729
Score = 31.1 bits (70), Expect = 2.2
Identities = 7/63 (11%), Positives = 24/63 (38%)
Query: 207 SIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELR 266
+ +++ + L E++ S ++ ++ E + + E A ++ + +R
Sbjct: 643 EVMSADRKELIKEISHRVSAIKVLVRDMTEARKVANHKENFKEKAFAYEETVRPYLESIR 702
Query: 267 AEA 269
Sbjct: 703 DHI 705
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 30.5 bits (69), Expect = 2.4
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 7/124 (5%)
Query: 226 KLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDK 285
L + L + + LE + ++++ ++LEL ++ L EI + K
Sbjct: 12 DLGTENLYFQSNAM----VNTNLEELRTQVDQLNIDLLELISKR---ANLVQEIGKIKGT 64
Query: 286 LTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSV 345
L + R E+ A NE E + +++ + L S + ++
Sbjct: 65 QGSLRFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKN 124
Query: 346 SSVD 349
D
Sbjct: 125 KKED 128
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription,
resistance, antibiotic; 2.90A {Streptomyces lividans}
Length = 108
Score = 29.1 bits (66), Expect = 2.5
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 216 LAVELADLKSKLRKQRLELEEKSEHLTESRDELEH 250
L AD ++ LR+Q L + L + +E
Sbjct: 68 LDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQ 102
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 30.6 bits (70), Expect = 2.6
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 18/74 (24%)
Query: 98 PDVLIIGREPES----KQGLENMKLLLLLLL-----GCAVQCPNKETFIERIKELPVESQ 148
P + +IG + E+ ++ GC V P T+ E ++E
Sbjct: 214 PTIKVIGVQAENVHGMAASYYTGEITTHRTTGTLADGCDVSRPGNLTY-EIVRE------ 266
Query: 149 HALVDCIKQVTENQ 162
LVD I V+E++
Sbjct: 267 --LVDDIVLVSEDE 278
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 29.7 bits (66), Expect = 2.9
Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 6/151 (3%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
RI +E+E + ++ + E E +E+ +K E + E+Q++
Sbjct: 3 RRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLK 62
Query: 462 VRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEA 521
++ +R+ +++ K +E L E + K A E+E+K
Sbjct: 63 EAKHIAEDADRKYEEVARKLVIIE------SDLERAEERAELSEGKCAELEEELKTVTNN 116
Query: 522 LESKAESLDKLTNKLESMEKEHVSLTKQIED 552
L+S + +++L +K +E E L K + +
Sbjct: 117 LKSLEDKVEELLSKNYHLENEVARLKKLVGE 147
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 30.3 bits (69), Expect = 3.1
Identities = 14/61 (22%), Positives = 25/61 (40%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQ 461
+I L+++ L ++ L+E + E K ET R ++ Q L I+
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62
Query: 462 V 462
V
Sbjct: 63 V 63
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 29.7 bits (66), Expect = 3.3
Identities = 28/161 (17%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Query: 400 SGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQ 459
+ E++ +L+K+ ++ + + +T RL TE ++LE+ R++ E + LE
Sbjct: 4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS 63
Query: 460 IQVRNDELDNMNREKQKLE-WKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
+ + + + + + E+ ++ ++++ EE+ K L E E K+
Sbjct: 64 KSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA 123
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
++ L + + L L K +Q ++ K
Sbjct: 124 QDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKA 164
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 30.2 bits (69), Expect = 3.5
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 696 TKL-HEQLNMEYESVVKEIKVLKSTLRD-------VKNENKTVKEQY-----SQLKVSYE 742
KL ++ E + KE L+ L +K E + + Y S L+ E
Sbjct: 400 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 459
Query: 743 SLQAEMEQL 751
+ +
Sbjct: 460 AKAMSEHDM 468
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 30.0 bits (67), Expect = 3.7
Identities = 19/148 (12%), Positives = 47/148 (31%), Gaps = 6/148 (4%)
Query: 426 RRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELE 485
R+L E + + +K E +Q + + K+ K E E
Sbjct: 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQE 153
Query: 486 LNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVS 545
+ + + K + ++K A + + + K + +E+ H+
Sbjct: 154 RLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLI 213
Query: 546 LTKQIEDQENELKKYNDLKREMDELDSK 573
K+I + ++ +E+ +
Sbjct: 214 HIKEI------IGSLSNAIKEIHLQIGQ 235
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 29.8 bits (66), Expect = 4.2
Identities = 10/76 (13%), Positives = 25/76 (32%)
Query: 681 ILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVS 740
L + + H++ M+ E + KE+ + + Q S+++
Sbjct: 146 FLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205
Query: 741 YESLQAEMEQLKFESH 756
YE ++ +
Sbjct: 206 YECEPGMVKGIHHGPS 221
Score = 29.0 bits (64), Expect = 7.7
Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 22/166 (13%)
Query: 390 ESLHENAFYESGERILELEKEK--KKLSLQVEDLEETKRRLSA-------------QCTE 434
L + + L + + + + + T R LS E
Sbjct: 86 GFLPFSNLVTHLDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYME 145
Query: 435 YESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNM-EINKQ 493
+ ++ +++++N ++Q ++++ E+D +L + +I +
Sbjct: 146 FLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWE 205
Query: 494 LSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM 539
+ + + L+S S +++ L S+
Sbjct: 206 YECEPGMVKGIHHGPSVAQ------PIHLDSTQLSRKFISDYLWSL 245
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 29.8 bits (66), Expect = 4.7
Identities = 47/283 (16%), Positives = 102/283 (36%), Gaps = 14/283 (4%)
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKE 514
NL + VR + + + + L+ NK ++ + NK+L+ N+ A E +
Sbjct: 290 NLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNK-----AVAEAK 344
Query: 515 IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENEL---KKYNDLKREMDELD 571
+ ++ + L+K K E +EKE + +N++ + N K E+ L
Sbjct: 345 STGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALI 404
Query: 572 SKYQVDKNTLSVLQNDLVNEKL----KTTHLKNSLDKLGLAMDDQTDAENI-LEKILSSP 626
+K +L K K + L + D+ + +N K +
Sbjct: 405 NKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETL 464
Query: 627 EILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQ-ISSLTSQHTALQLANSQLILANH 685
+ L K LG+ N + K +++ S +T + L+ + +I+
Sbjct: 465 KALKGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSVKDVIINQK 524
Query: 686 NELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENK 728
D + + ++ V + + LK+ ++ +
Sbjct: 525 VTDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQA 567
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 29.5 bits (67), Expect = 5.1
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 18/72 (25%)
Query: 98 PDVLIIGREPES----KQGLENMKLLLLLLL-----GCAVQCPNKETFIERIKELPVESQ 148
P+ IIG EP L + L + G AV + TF + +E
Sbjct: 234 PNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTF-AKCQE------ 286
Query: 149 HALVDCIKQVTE 160
L+D + V
Sbjct: 287 --LIDGMVLVAN 296
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.9 bits (62), Expect = 5.2
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 459 QIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKC 518
++Q+ + +N ++ E K E + ++I + + +L E +
Sbjct: 10 KMQMLKLDKENALDRAEQAEADKKAAEERSK------QLEDDIVQLEKQLRVTEDSRDQV 63
Query: 519 KEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE 556
E L +SL E E SL ++I+ E E
Sbjct: 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 5.3
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 219 ELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEAR 270
+ +LK K R EL E SE E ++N A+ + E +
Sbjct: 733 FVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQ 784
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 29.5 bits (65), Expect = 5.3
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 7/133 (5%)
Query: 492 KQLSNNTEEINEYKTKLAN------CEKEIKKCKEALESKAESLDKLTNKLES-MEKEHV 544
+ E ++E ++ EK KEA + K T + E K
Sbjct: 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQK 150
Query: 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDK 604
K++++ E K ++ +E S+ K S+ L + K K + K
Sbjct: 151 PWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLK 210
Query: 605 LGLAMDDQTDAEN 617
+ +
Sbjct: 211 TKEKYEKSLKELD 223
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.4 bits (65), Expect = 5.6
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 351 NDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKE 410
+ + E+ AK ++E+E +++ +S + ++
Sbjct: 307 KNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQ 366
Query: 411 -KKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETE 445
KK L Q ++LEE +R+ + +E++ LE +
Sbjct: 367 MKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQ 402
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 29.3 bits (65), Expect = 5.9
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 5/178 (2%)
Query: 724 KNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLK 783
E + ++ K +E L N+ + +L + + +LK
Sbjct: 132 GEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELK 191
Query: 784 ADFRALQEEHKGNHMEKRKLTLSLTELEGELAN-RDDAISALSVQLSKYQNKLEDDRRKL 842
R++ + R+++ E E R + L+ + +LE R +L
Sbjct: 192 EKLRSINQGLD----RLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREEL 247
Query: 843 MEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLD 900
+ H + + H E ++++ + LE + E +
Sbjct: 248 KHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVK 305
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes,
curvature membrane, structural genomics consortium;
1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Length = 243
Score = 29.0 bits (64), Expect = 6.0
Identities = 20/154 (12%), Positives = 56/154 (36%), Gaps = 2/154 (1%)
Query: 408 EKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDEL 467
+++ ++ + E RL + Y + ++ K+ ES + +++
Sbjct: 37 DEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDV 96
Query: 468 DNMNREKQKL--EWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESK 525
+ + L ++ K ++ ++ +I K + + + LE+
Sbjct: 97 KMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEAL 156
Query: 526 AESLDKLTNKLESMEKEHVSLTKQIEDQENELKK 559
S K +++ E+E K E+ +L++
Sbjct: 157 QSSKRKDESRISKAEEEFQKAQKVFEEFNVDLQE 190
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 28.8 bits (65), Expect = 6.0
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 21/103 (20%)
Query: 227 LRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKL 286
+ + L E S L +L + R E K EI+R K +
Sbjct: 9 VEEMERLLREASSILRVEPAKLPKT---VERFFEEW----------KDQRKEIERLKSVI 55
Query: 287 TDLEYYKSRVEELRQDNRAINE---IALERDANAEKLQQLIEE 326
+ L + + +A DA+ + LQ+L E
Sbjct: 56 A-----DLWADILMERAEEFDSMKVVAEVVDADMQALQKLAER 93
>1r8d_A Transcription activator MTAN; protein-DNA complex,
transcription/DNA complex; 2.70A {Bacillus subtilis}
SCOP: a.6.1.3 PDB: 1jbg_A
Length = 109
Score = 27.9 bits (63), Expect = 6.3
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 214 QHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALIN 256
+ L D K+ L+ Q+ L +K + + E ++ ++
Sbjct: 67 EMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD 109
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.5 bits (67), Expect = 6.5
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 11/80 (13%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQ-----------CTEYESKFTKLETEIRKIN 450
I+ +E ++L Q+ LEE K ++ + + ++ L R+I
Sbjct: 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIR 129
Query: 451 ESYQNLELQIQVRNDELDNM 470
+ L + ++
Sbjct: 130 KQLTLLYPKEAQLEEQFYLR 149
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding,
isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia
psychrerythraea} PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Length = 500
Score = 29.5 bits (67), Expect = 6.6
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 699 HEQLNMEYESVVKEIKVLKSTLRD-------VKNENKTVKEQYS 735
H+++ EY++++ I L L + E +++++
Sbjct: 441 HDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFG 484
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 29.2 bits (65), Expect = 6.7
Identities = 6/49 (12%), Positives = 23/49 (46%)
Query: 36 YEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKS 84
DL+DG+ + + ++ + +H+ ++++N + ++ +
Sbjct: 71 QTDLSDGLRLIALLEVLSQKKMHRKHNQRPTFRQMQLENVSVALEFLDR 119
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 29.0 bits (64), Expect = 6.9
Identities = 20/188 (10%), Positives = 59/188 (31%), Gaps = 5/188 (2%)
Query: 410 EKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDN 469
+ K+ +++ E E + + + Y++ ++
Sbjct: 112 DCIKIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAE 171
Query: 470 MNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESL 529
+ + + L N + + + E+I + + + K + + L+ A+
Sbjct: 172 LQSKLKDL--FNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLY 229
Query: 530 -DKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDL 588
D+L ++ + E + D +N + + Y+V + +
Sbjct: 230 KDRLGLEIRKIYGEKLQFIFTNIDPKNPESPFMFSLHLNEA--RDYEVSDSAPHLEGLAE 287
Query: 589 VNEKLKTT 596
E ++ T
Sbjct: 288 FQENVRKT 295
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 29.3 bits (65), Expect = 7.5
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 208 IGNSECQHLAVELAD-LKSKLRKQRLELEEKSEHLTESRDELEHH 251
GNS + +A L+ K+++ +++++H SR+ HH
Sbjct: 436 FGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRRSREGHHHH 480
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 29.1 bits (65), Expect = 8.4
Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 319 KLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRL 378
K+ + ++ ++ L + + +P D S + +A K+ ++
Sbjct: 35 KVDKDLQSLEDI--LHQVENKTSEVKQLIKAIQLTYNP---DESSKPNMIDAATLKSRKM 89
Query: 379 ELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESK 438
E + ++I + + I L++ + ++ +L+E +L AQC E
Sbjct: 90 LEEIMKYEASILTHDSS--------IRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKD 141
Query: 439 FTKLE 443
++
Sbjct: 142 TVQIH 146
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.2 bits (64), Expect = 9.2
Identities = 37/341 (10%), Positives = 97/341 (28%), Gaps = 12/341 (3%)
Query: 210 NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEA 269
L ++ +LK ++ E + + E + E+ + + R +E
Sbjct: 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLN 410
Query: 270 RSGKALESEIQRYKDKLTDLEYYKSRVEEL-------RQDNRAINEIALERDANAEKLQQ 322
E++ RY+ +L ++ S E + ++ A + +
Sbjct: 411 LG-NTFENDFLRYQPELNLFDFLSSGKREAFNAALQKAFEQYITDKSAAWTLTAEKDINA 469
Query: 323 LIEE-NTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELE 381
+E + + S S + +Q + D+ + + A L +
Sbjct: 470 AFKELSRSASQYGASYNQITDQITEKLTGKDVKVHTTTTAEEDNSPGWAKWAMGLLSLSK 529
Query: 382 NKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTK 441
+ + + ++ L L +
Sbjct: 530 GNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLGVGF---LQA 586
Query: 442 LETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEI 501
+ + + + L + E + K + + E E++ IN + + E+
Sbjct: 587 DQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSEL 646
Query: 502 NEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKE 542
+ + E + L++ E + K+E+
Sbjct: 647 DNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSN 687
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.2 bits (62), Expect = 9.6
Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 5/191 (2%)
Query: 395 NAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQ 454
F E ++ K ++ + E E +LE ++ + + +
Sbjct: 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELE---AELEAQLVQAEQRNR 59
Query: 455 NLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKE 514
+L+ Q E++ + + + + + + LS + + E+
Sbjct: 60 DLQADNQRLKYEVEALKEKLEHQ--YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117
Query: 515 IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKY 574
+ A + SL+ +L + + L +++++E+ L LK E +L +
Sbjct: 118 NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQEL 177
Query: 575 QVDKNTLSVLQ 585
V + V +
Sbjct: 178 AVRERQQEVTR 188
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 28.9 bits (65), Expect = 9.7
Identities = 10/69 (14%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 696 TKL-HEQLNMEYESVVKEIKVLKSTLRD-------VKNENKTVKEQY-----SQLKVSYE 742
KL ++ E + + + +++ L + + +E K +++ S + E
Sbjct: 694 AKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAE 753
Query: 743 SLQAEMEQL 751
++Q + + L
Sbjct: 754 AVQIKEQDL 762
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.5 bits (63), Expect = 9.9
Identities = 31/176 (17%), Positives = 68/176 (38%), Gaps = 6/176 (3%)
Query: 394 ENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESY 453
E RI E+E + ++ + E E +E+ +K E
Sbjct: 82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 141
Query: 454 QNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEK 513
+ E+Q++ ++ +R+ +++ K +E L E + K A E+
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIE------SDLERAEERAELSEGKCAELEE 195
Query: 514 EIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDE 569
EIK L+S +K + K + E+E L+ ++++ E + ++++
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEK 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.126 0.332
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,376,651
Number of extensions: 804347
Number of successful extensions: 3308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2795
Number of HSP's successfully gapped: 635
Length of query: 964
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 861
Effective length of database: 3,825,930
Effective search space: 3294125730
Effective search space used: 3294125730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (27.5 bits)