RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3622
(964 letters)
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 164
Score = 121 bits (306), Expect = 1e-32
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 12/164 (7%)
Query: 6 ATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSL 65
+S L L+ WL + D + L +G+ + +V ID +S + +
Sbjct: 1 GSSGSSGLPLCDSLIIWLQTF-KTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRI 59
Query: 66 R-----NASVRIKNFNTIVKNIKSLYEEELCQIVLV--LPDVLIIGREPESKQGLENMKL 118
+ N ++ N ++ I S Y E L Q + +PD+ I + +
Sbjct: 60 KDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECAD----PVELGR 115
Query: 119 LLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQ 162
LL L+LGCAV C K+ I+ I L QH ++ I+++
Sbjct: 116 LLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKS 159
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 33.8 bits (77), Expect = 0.10
Identities = 43/245 (17%), Positives = 91/245 (37%), Gaps = 26/245 (10%)
Query: 612 QTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQ---ISSLTS 668
Q + ++EKI L K+ G+ DES + ++ +++K +++L S
Sbjct: 238 QVNKARLIEKIAE----LVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYS 293
Query: 669 QHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENK 728
Q ++ +H + M + + VV R E +
Sbjct: 294 QTQLQVSFGINMVALHHGQ--PKIMNLKDIIAAFVRHRREVVT---------RRTIFELR 342
Query: 729 TVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRA 788
+++ L+ +L ++ H+ + A+ + + + +++ A +A A
Sbjct: 343 KARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDA 402
Query: 789 LQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQ-LSKY-QNKLEDDRRKLMEHV 846
+ E R LTE + AI L +Q L+ KL D+ ++L++ +
Sbjct: 403 ARPEWLEPEFGVRDGLYYLTEQQA------QAILDLRLQKLTGLEHEKLLDEYKELLDQI 456
Query: 847 TNLLA 851
LL
Sbjct: 457 AELLR 461
Score = 27.6 bits (61), Expect = 9.6
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 499 EEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH 543
E + + +I + L S ++ + +LE + ++
Sbjct: 440 LEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQF 484
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
{Thermus aquaticus [TaxId: 271]}
Length = 409
Score = 29.6 bits (65), Expect = 1.7
Identities = 18/155 (11%), Positives = 49/155 (31%), Gaps = 4/155 (2%)
Query: 425 KRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKEL 484
L A E + +LE E+ ++ NL + Q+ D + K +
Sbjct: 31 VAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKR 90
Query: 485 ELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHV 544
+ + + L + K+ + K ++ + + T +L + +
Sbjct: 91 STSAAVLEALREAHPIVE----KILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTA 146
Query: 545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKN 579
+ T ++ + L+ + + ++
Sbjct: 147 TATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEG 181
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.8 bits (66), Expect = 1.8
Identities = 27/199 (13%), Positives = 68/199 (34%), Gaps = 29/199 (14%)
Query: 261 EMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINE------IALERD 314
E +R E K + +R + ++ + ++ + + + I +
Sbjct: 578 EFYYVRLEYYQ-KRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELEN 636
Query: 315 ANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAK 374
+ + + + Q D + +S + ++ +S +N ++ +
Sbjct: 637 LGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 696
Query: 375 ALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEET------KRRL 428
L L + L + ER +L K+K++ ++E+L + L
Sbjct: 697 YL-LGMRIWSL--------------TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDL 741
Query: 429 SAQCTEYESKFTKLETEIR 447
A Y+ +F + + E R
Sbjct: 742 KAFEVGYQ-EFLQRDAEAR 759
Score = 27.9 bits (61), Expect = 7.1
Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 4/120 (3%)
Query: 631 AVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQ 690
K+ + + + +V TS + + + T + + + + LL
Sbjct: 641 RFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLG 700
Query: 691 DQM-TMTKL-HEQLNMEYESVVKEIKVLKSTLRD--VKNENKTVKEQYSQLKVSYESLQA 746
++ ++TK +++L + + E++ L + K + Y + +
Sbjct: 701 MRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEARG 760
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 457 ELQIQVRNDELDNMNREKQKLEWKNKEL 484
E +I+ NDE++ + REK E + KEL
Sbjct: 45 EFRIRDLNDEINKLLREKGHWEVRIKEL 72
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
[TaxId: 562]}
Length = 213
Score = 27.4 bits (61), Expect = 6.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 794 KGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLE 836
+G + E + TLSL LE +L++ A+ L +++ Q +LE
Sbjct: 79 QGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLE 121
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 26.4 bits (58), Expect = 7.6
Identities = 10/70 (14%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 402 ERILELEKEKKKLSLQVEDLEETKRRLSAQ-CTEYESKFTKLETEIRKINESYQNLELQI 460
E +L L++E ++L ++++++ + +++ + + L + + E + LE +
Sbjct: 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEAL 87
Query: 461 QVRNDELDNM 470
+ + L+ +
Sbjct: 88 REKEARLEAL 97
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.7 bits (59), Expect = 7.7
Identities = 15/96 (15%), Positives = 39/96 (40%)
Query: 496 NNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQEN 555
EEI + K+A +E+K+ A+ + +K +LE + + ++ +
Sbjct: 10 EQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLK 69
Query: 556 ELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNE 591
+++ + + ++ + ++ K S L V
Sbjct: 70 SIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEV 105
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 27.6 bits (61), Expect = 8.4
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 419 EDLEETKRRLSAQCTEYESKFTKLE----TEIRKINESYQNLELQI-QVRNDELDNMNRE 473
+ + K+ L AQ + ++ F +L + +IN+ + + EL N
Sbjct: 14 AAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNIS 73
Query: 474 KQKLE 478
Sbjct: 74 DATRA 78
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 26.7 bits (59), Expect = 9.5
Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 14/140 (10%)
Query: 440 TKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTE 499
+ T++ I ES+Q ++ IQ ++ + + K L++ L+ +
Sbjct: 7 CLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFYVD 66
Query: 500 EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM--------EKEHVSLTKQIE 551
+ + ++ K + S A S + L +E + T+ I
Sbjct: 67 RV------FKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIH 120
Query: 552 DQENELKKYNDLKREMDELD 571
D ++L+ + + + ELD
Sbjct: 121 DNYDQLEVHAAAIKSLGELD 140
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 27.2 bits (59), Expect = 9.8
Identities = 8/49 (16%), Positives = 23/49 (46%)
Query: 414 LSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQV 462
L + E+L + +A+ + + + E ++++ + +L I+V
Sbjct: 1 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRV 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.126 0.332
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,191,991
Number of extensions: 150018
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 660
Number of HSP's successfully gapped: 140
Length of query: 964
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 870
Effective length of database: 1,116,976
Effective search space: 971769120
Effective search space used: 971769120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (25.9 bits)