BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3624
(1010 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 1291 bits (3342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 630/998 (63%), Positives = 765/998 (76%), Gaps = 4/998 (0%)
Query: 16 KSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKT 75
K +D LKKE+ +DDHKL L +L +Y T +GLT A+A + L RDGPN+LTP T
Sbjct: 2 KKERDMDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTT 61
Query: 76 PAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIF 135
P WV + LF GFS+LLW GA+LCF+AY I+ E+ DNL+LG+VL V IITG F
Sbjct: 62 PEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCF 121
Query: 136 SYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRII 195
SY QEAKS++IM+SFKNMVPQ A VIR+G+K +I + E+V GD+V+VK GDRIPAD+RII
Sbjct: 122 SYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRII 181
Query: 196 ESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTV 255
++G KVDNSSLTGE+EPQ R+ + LE +N+AFFSTN VEGTA+GIV+ GD TV
Sbjct: 182 SANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTV 241
Query: 256 MGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIG 315
MGRIA L SGLE G TPIA EI HF+H+I+ A+FLGV+FF LS L Y W++AVIFLIG
Sbjct: 242 MGRIATLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIG 301
Query: 316 IIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRM 375
IIVANVPEGLLATVTVCL+LTAKRMA KNC+VK+LEAVETLGSTSTICSDKTGTLTQNRM
Sbjct: 302 IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 361
Query: 376 TVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKR 435
TV H+ D ++ E D ++ +G + + +++ L+ LCNRA F NQE + ILKR
Sbjct: 362 TVAHMWSDNQIHEADTTENQSG-VSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKR 420
Query: 436 EVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNN---EYLL 492
V GDASE+A+LK EL G V E R R+ K +EIPFNST+KYQ+SIH PN +LL
Sbjct: 421 AVAGDASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLL 480
Query: 493 VMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKF 552
VMKGAPERILDRCS++ K+ LD + + + +LG GERVLGFC LP +F
Sbjct: 481 VMKGAPERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQF 540
Query: 553 PAGFELKSDPPNFPLTGLRFLGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAK 612
P GF+ +D NFPL L F+GL+SMI KCRSAGI+VIMVTGDHP+TAK
Sbjct: 541 PEGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAK 600
Query: 613 AIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTH 672
AIAK VGIISEG+ET+EDIA R +PVS ++PR++ V+ GS L+DMT+EQL+++L+ H
Sbjct: 601 AIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYH 660
Query: 673 REIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQT 732
EIVFARTSP QKL IVEGCQR GAIVAVTGDGVNDSPA KKADIG+AMGI GSDVSKQ
Sbjct: 661 TEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQA 720
Query: 733 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVV 792
ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTL SN+PEITPFL+FI+ IPLPLG V
Sbjct: 721 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTV 780
Query: 793 AILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAG 852
ILCIDLGTDM PAISLAYE+AESDIM+R PRNP TDKLV +L+ +AYGQIG+I+A G
Sbjct: 781 TILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGG 840
Query: 853 FFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIA 912
FF+YFVI+A+NG++P L+G+R W+ IND+EDSYGQ+WTY RKI+E+TCHT FF+
Sbjct: 841 FFTYFVILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTPFFVT 900
Query: 913 IVVVQWADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRA 972
IVVVQWADL+ICKTR NS+ QGM N +L FG+ ET A +SYCPGM L+ YP++
Sbjct: 901 IVVVQWADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKP 960
Query: 973 EWWLPAVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
WW A P++++IF+YDE R+ +R P GWVE+ETYY
Sbjct: 961 TWWFCAFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY 998
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/993 (63%), Positives = 763/993 (76%), Gaps = 4/993 (0%)
Query: 21 LDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVI 80
+D LKKE+ +DDHKL L +L +Y T +GLT A+A + L RDGPN+LTP TP WV
Sbjct: 1 MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 60
Query: 81 LLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQE 140
+ LF GFS+LLW GA+LCF+AY I+ E+ DNL+LG+VL V IITG FSY QE
Sbjct: 61 FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 120
Query: 141 AKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGF 200
AKS++IM+SFKNMVPQ A VIR+G+K +I + E+V GD+V+VK GDRIPAD+RII ++G
Sbjct: 121 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGC 180
Query: 201 KVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIA 260
KVDNSSLTGE+EPQ R+ + LE +N+AFFSTN VEGTA+GIV+ GD TVMGRIA
Sbjct: 181 KVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIA 240
Query: 261 GLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVAN 320
L SGLE G TPIA EI HF+H+I+ A+FLGV+FF LS L Y W++AVIFLIGIIVAN
Sbjct: 241 TLASGLEGGQTPIAAEIEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVAN 300
Query: 321 VPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHL 380
VPEGLLATVTVCL+LTAKRMA KNC+VK+LEAVETLGSTSTICS KTGTLTQNRMTV H+
Sbjct: 301 VPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHM 360
Query: 381 SFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGD 440
D ++ E D ++ +G + + +++ L+ LCNRA F NQE + ILKR V GD
Sbjct: 361 WSDNQIHEADTTENQSG-VSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGD 419
Query: 441 ASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNN---EYLLVMKGA 497
ASE+A+LK EL G V E R R+ K +EIPFNST+KYQ+SIH PN +LLVMKGA
Sbjct: 420 ASESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGA 479
Query: 498 PERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFE 557
PERILDRCS++ K+ LD + + + +LG GERVLGFC LP +FP GF+
Sbjct: 480 PERILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQ 539
Query: 558 LKSDPPNFPLTGLRFLGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKA 617
+D NFPL L F+GL+SMI KCRSAGI+VIMVTGDHP+TAKAIAK
Sbjct: 540 FDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG 599
Query: 618 VGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVF 677
VGIISEG+ET+EDIA R +PVS ++PR++ V+ GS L+DMT+EQL+++L+ H EIVF
Sbjct: 600 VGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVF 659
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
ARTSP QKL IVEGCQR GAIVAVTGDGVNDSPA KKADIG+AMGI GSDVSKQ ADMIL
Sbjct: 660 ARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMIL 719
Query: 738 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCI 797
LDDNFASIVTGVEEGRLIFDNLKKSIAYTL SN+PEITPFL+FI+ IPLPLG V ILCI
Sbjct: 720 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCI 779
Query: 798 DLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSYF 857
DLGTDM PAISLAYE+AESDIM+R PRNP TDKLV +L+ +AYGQIG+I+A GFF+YF
Sbjct: 780 DLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQIGMIQALGGFFTYF 839
Query: 858 VIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQ 917
VI+A+NG++P L+G+R W+ IND+EDSYGQ+WTY RKI+E+TCHT FF+ IVVVQ
Sbjct: 840 VILAENGFLPIHLLGLRVNWDDRWINDVEDSYGQQWTYEQRKIVEFTCHTPFFVTIVVVQ 899
Query: 918 WADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWWLP 977
WADL+ICKTR NS+ QGM N +L FG+ ET A +SYCPGM L+ YP++ WW
Sbjct: 900 WADLVICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFC 959
Query: 978 AVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
A P++++IF+YDE R+ +R P GWVE+ETYY
Sbjct: 960 AFPYSLLIFVYDEVRKLIIRRRPGGWVEKETYY 992
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 1278 bits (3306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 629/990 (63%), Positives = 767/990 (77%), Gaps = 4/990 (0%)
Query: 24 LKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLK 83
LKKE+ +DDHKL L +L +Y T +GLT+A+AK+ L RDGPNSLTP TP W+ +
Sbjct: 40 LKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCR 99
Query: 84 HLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKS 143
LF GFS+LLW GA+LCF+AY I+ ++ + DNL+LG+VL TV I+TG FSY QEAKS
Sbjct: 100 QLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKS 159
Query: 144 ARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVD 203
+RIMDSFKNMVPQ A VIRDG+K TI + +V GD+V+VK GDRIPAD+RII +HG KVD
Sbjct: 160 SRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVD 219
Query: 204 NSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLT 263
NSSLTGE+EPQ R+ S+ LE +N+AFFSTN VEGTA+G+V+ GD TVMGRIA L
Sbjct: 220 NSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLA 279
Query: 264 SGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPE 323
SGLE G TPIA EI HF+H+I+ A+FLGV+FF LS LGY+W++AVIFLIGIIVANVPE
Sbjct: 280 SGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSWLEAVIFLIGIIVANVPE 339
Query: 324 GLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFD 383
GLLATVTVCL+LTAKRMA KNC+VK+LEAVETLGSTSTICSDKTGTLTQNRMTV H+ FD
Sbjct: 340 GLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFD 399
Query: 384 KEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASE 443
++ E D ++ +G + +++ L+ +LCNRA F Q+ + ILKR V GDASE
Sbjct: 400 NQIHEADTTENQSGAAFD-KTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASE 458
Query: 444 AAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIH---IMPNNEYLLVMKGAPER 500
+A+LK EL G V R+R+ K +EIPFNST+KYQ+SIH + YLLVMKGAPER
Sbjct: 459 SALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPER 518
Query: 501 ILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKS 560
ILDRCST+ + L + + +LG GERVLGFC +ALP K+ G+ +
Sbjct: 519 ILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDA 578
Query: 561 DPPNFPLTGLRFLGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
D PNFP T L F+GLM+MI KCRSAGI+VIMVTGDHP+TAKAIAK VGI
Sbjct: 579 DEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGI 638
Query: 621 ISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFART 680
ISEG+ET+EDIA R +P+ ++PR++ V+ GS L+D++TE L+++L H EIVFART
Sbjct: 639 ISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVFART 698
Query: 681 SPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDD 740
SP QKL IVEGCQR GAIVAVTGDGVNDSPALKKADIG+AMGI+GSDVSKQ ADMILLDD
Sbjct: 699 SPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDD 758
Query: 741 NFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLG 800
NFASIVTGVEEGRLIFDNLKKSIAYTL SN+PEITPFL+FI+ +PLPLG V ILCIDLG
Sbjct: 759 NFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVTILCIDLG 818
Query: 801 TDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSYFVIM 860
TDM PAISLAYE+AESDIM+R PRNP TDKLV +L+ +AYGQIG+I+A GFFSYFVI+
Sbjct: 819 TDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGGFFSYFVIL 878
Query: 861 AQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWAD 920
A+NG++P LIG R RW+ I+D+EDS+GQ+WTY RKI+E+TCHT+FFI+IVVVQWAD
Sbjct: 879 AENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVEFTCHTSFFISIVVVQWAD 938
Query: 921 LLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWWLPAVP 980
L+ICKTR NS+ QGM N +L FG+ ET A +SYCPG D L+ YP++ WW A P
Sbjct: 939 LIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPGTDVALRMYPLKPSWWFCAFP 998
Query: 981 FAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
++++IF+YDE RRF +R P GWVE+ETYY
Sbjct: 999 YSLIIFLYDEMRRFIIRRSPGGWVEQETYY 1028
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/995 (54%), Positives = 706/995 (70%), Gaps = 5/995 (0%)
Query: 20 KLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWV 79
KL+N+KKE+E++DH+L + +L +YQTSA KGL+++ A + LLRDGPN+L P + TP +V
Sbjct: 41 KLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYV 100
Query: 80 ILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQ 139
+ L G L+W A +C IA+ I+ + + DNL+L + L+ V ++TG F Y Q
Sbjct: 101 KFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQ 160
Query: 140 EAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHG 199
E KS I+ SFKN+VPQ A VIRDG K I + +LV GD+V++K GDR+PADIRI+++ G
Sbjct: 161 EFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG 220
Query: 200 FKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRI 259
KVDNSSLTGE+EPQ R+ + LE +N+AFFST +EGTA+G+V+ GD T++GRI
Sbjct: 221 RKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRI 280
Query: 260 AGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVA 319
A L SG+E+ TPIA EI HF+ +I+ AI G TFF ++ +GY ++ A++F + I+VA
Sbjct: 281 ASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAMVFFMAIVVA 340
Query: 320 NVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTH 379
VPEGLLATVTVCLSLTAKR+ASKNCVVK+LEAVETLGSTS ICSDKTGTLTQNRMTV+H
Sbjct: 341 YVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSH 400
Query: 380 LSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMG 439
L FD + D +D +G ++ +++ L +LCNRA F Q+ + + KR V+G
Sbjct: 401 LWFDNHIHSADTTEDQSGQTFD-QSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIG 459
Query: 440 DASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNE---YLLVMKG 496
DASE A+LKFSEL +G+ + +R R K EIPFNST+K+Q+SIH + + ++LVMKG
Sbjct: 460 DASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKG 519
Query: 497 APERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGF 556
APER+L+RCS++ +++ LD + R + LG GERVLGFC L +P G+
Sbjct: 520 APERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGY 579
Query: 557 ELKSDPPNFPLTGLRFLGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAK 616
+ NFP +GL F GL+SMI KCR+AGIRVIMVTGDHP+TAKAIA
Sbjct: 580 AFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAA 639
Query: 617 AVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIV 676
+VGIISEGSET+EDIA R RVPV ++ +++ VI G L+DM +L LRTH E+V
Sbjct: 640 SVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMV 699
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
FARTSP QKL IVE CQRLGAIVAVTGDGVNDSPALKKADIG+AMGI GSD +K ADMI
Sbjct: 700 FARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMI 759
Query: 737 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILC 796
LLDDNFASIVTGVE+GRLIFDNLKKSIAYTL N+PE+TP+L++I + +PLPLG + IL
Sbjct: 760 LLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILF 819
Query: 797 IDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSY 856
I+L TD++P++SLAYEKAESDIM PRNP D+LV L +Y QIG I++ AGF Y
Sbjct: 820 IELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDY 879
Query: 857 FVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVV 916
F MAQ GW P +G+R +WE+ + DL+DSYGQEWT+ R +YTC+T FFI+I +
Sbjct: 880 FTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMC 939
Query: 917 QWADLLICKTRYNSLVHQG-MNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWW 975
Q AD+LI KTR S QG N +L IVF+ C + YCPGM I P+R +WW
Sbjct: 940 QIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFNFMPIRFQWW 999
Query: 976 LPAVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
L +PF ++IF+YDE R+ +R P W ++E YY
Sbjct: 1000 LVPMPFGLLIFVYDEIRKLGVRCCPGSWWDQELYY 1034
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 348 bits (892), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 276/872 (31%), Positives = 419/872 (48%), Gaps = 95/872 (10%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H ++ A + S GLT Q K+ L + G N L + W ++L+ + +
Sbjct: 5 HSKTTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRI 64
Query: 93 LWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN 152
L A + F+ L F E+ + ++L+ + I I QE + +++ K
Sbjct: 65 LLLAACISFV--LAWFEEGEETVTAFVEPFVILL-ILIANAIVGVWQERNAENAIEALKE 121
Query: 153 MVPQYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRI--IESHGFKVDNSSLT 208
P+ V R +K + I + ++V GD+V+V GD++PADIRI I+S +VD S LT
Sbjct: 122 YEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILT 181
Query: 209 GEAEPQARNAS---ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSG 265
GE+ ++ + + + KN+ F TN G A GIV G T +G+I +
Sbjct: 182 GESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAA 241
Query: 266 LESGDTPIAKEIHHF---------MHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
E TP+ +++ F + ++ W I +G F G +WI I+ I
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG---HFNDPVHGGSWIRGAIYYFKI 298
Query: 317 IVANV----PEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQ 372
VA PEGL A +T CL+L +RMA KN +V+ L +VETLG TS ICSDKTGTLT
Sbjct: 299 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTT 358
Query: 373 NRMTVTHL----SFDKEVFEVDYFK------DPTGLIEK----VRN--MSSYKDLTLAGS 416
N+M+V + D ++ ++ F P G + K VR+ +L +
Sbjct: 359 NQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICA 418
Query: 417 LCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHK----------- 465
LCN + N+ K E +G+A+E A+ E E RN K
Sbjct: 419 LCNDSSLDFNETKGIY---EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 466 -----KALEIPFNSTDKYQVSIHIMPNNEYLLV-----MKGAPERILDRCSTMKQGDKDV 515
K + F S D+ +S++ P V +KGAPE ++DRC+ ++ G V
Sbjct: 476 RQLMKKEFTLEF-SRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRV 534
Query: 516 ELDAKNRHEVEEILEQLGNYGE--RVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFL 573
+ + ++ ++++ G + R L PP + + + + T L F+
Sbjct: 535 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYE-TDLTFV 593
Query: 574 GLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAK 633
G++ M+ CR AGIRVIM+TGD+ TA AI + +GI E ED+A
Sbjct: 594 GVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEN----EDVAD 649
Query: 634 RRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQ 693
R G D+ + R R FAR PT K IVE Q
Sbjct: 650 R----------------AYTGREFDDLPLAEQREACR--RACCFARVEPTHKSKIVEYLQ 691
Query: 694 RLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGR 753
I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEEGR
Sbjct: 692 SFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 750
Query: 754 LIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYEK 813
I++N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L +
Sbjct: 751 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 810
Query: 814 AESDIMRRHPRNPVTDKLVTGKLLFVAYGQIG 845
+ DIM R PR P + L++G L F Y IG
Sbjct: 811 PDLDIMDRPPRTP-KEPLISGWLFF-RYMAIG 840
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 272/873 (31%), Positives = 420/873 (48%), Gaps = 96/873 (10%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H ++ A + S GLT Q K+ L + G N L + W ++++ + +
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 65
Query: 93 LWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN 152
L A + F+ L F E+ + ++L+ + I I QE + +++ K
Sbjct: 66 LLLAACISFV--LAWFEEGEETITAFVEPFVILL-ILIANAIVGVWQERNAENAIEALKE 122
Query: 153 MVPQYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRI--IESHGFKVDNSSLT 208
P+ V R +K + I + ++V GD+V+V GD++PADIRI I+S +VD S LT
Sbjct: 123 YEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 182
Query: 209 GEAEPQARNAS---ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSG 265
GE+ ++ + + + KN+ F TN G A GIV G +T +G+I +
Sbjct: 183 GESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAA 242
Query: 266 LESGDTPIAKEIHHF---------MHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
E TP+ +++ F + ++ W I +G F G +WI I+ I
Sbjct: 243 TEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG---HFNDPVHGGSWIRGAIYYFKI 299
Query: 317 IVANV----PEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQ 372
VA PEGL A +T CL+L +RMA KN +V+ L +VETLG TS ICSDKTGTLT
Sbjct: 300 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTT 359
Query: 373 NRMTVTHL----SFDKEVFEVDYFK------DPTGLIEK----VRN--MSSYKDLTLAGS 416
N+M+V + D + ++ F P G + K +R+ +L +
Sbjct: 360 NQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICA 419
Query: 417 LCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHK----------- 465
LCN + N+ K E +G+A+E A+ E E RN K
Sbjct: 420 LCNDSSLDFNETKGVY---EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 476
Query: 466 -----KALEIPFNSTDKYQVSIHIMPNNEYL------LVMKGAPERILDRCSTMKQGDKD 514
K + F S D+ +S++ P + +KGAPE ++DRC+ ++ G
Sbjct: 477 RQLMKKEFTLEF-SRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 535
Query: 515 VELDAKNRHEVEEILEQLGNYGE--RVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRF 572
V + + ++ ++++ G + R L PP + + S + T L F
Sbjct: 536 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE-TDLTF 594
Query: 573 LGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIA 632
+G++ M+ CR AGIRVIM+TGD+ TA AI + +GI E E++A
Sbjct: 595 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEN----EEVA 650
Query: 633 KRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGC 692
R G D+ + R R FAR P+ K IVE
Sbjct: 651 DR----------------AYTGREFDDLPLAEQREACR--RACCFARVEPSHKSKIVEYL 692
Query: 693 QRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEG 752
Q I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEEG
Sbjct: 693 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 753 RLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYE 812
R I++N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L +
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 811
Query: 813 KAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIG 845
+ DIM R PR+P + L++G LF Y IG
Sbjct: 812 PPDLDIMDRPPRSP-KEPLISG-WLFFRYMAIG 842
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 272/873 (31%), Positives = 420/873 (48%), Gaps = 96/873 (10%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H ++ A + S GLT Q K+ L + G N L + W ++++ + +
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 64
Query: 93 LWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN 152
L A + F+ L F E+ + ++L+ + I I QE + +++ K
Sbjct: 65 LLLAACISFV--LAWFEEGEETITAFVEPFVILL-ILIANAIVGVWQERNAENAIEALKE 121
Query: 153 MVPQYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRI--IESHGFKVDNSSLT 208
P+ V R +K + I + ++V GD+V+V GD++PADIRI I+S +VD S LT
Sbjct: 122 YEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 181
Query: 209 GEAEPQARNAS---ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSG 265
GE+ ++ + + + KN+ F TN G A GIV G +T +G+I +
Sbjct: 182 GESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAA 241
Query: 266 LESGDTPIAKEIHHF---------MHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
E TP+ +++ F + ++ W I +G F G +WI I+ I
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG---HFNDPVHGGSWIRGAIYYFKI 298
Query: 317 IVANV----PEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQ 372
VA PEGL A +T CL+L +RMA KN +V+ L +VETLG TS ICSDKTGTLT
Sbjct: 299 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTT 358
Query: 373 NRMTVTHL----SFDKEVFEVDYFK------DPTGLIEK----VRN--MSSYKDLTLAGS 416
N+M+V + D + ++ F P G + K +R+ +L +
Sbjct: 359 NQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICA 418
Query: 417 LCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHK----------- 465
LCN + N+ K E +G+A+E A+ E E RN K
Sbjct: 419 LCNDSSLDFNETKGVY---EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 466 -----KALEIPFNSTDKYQVSIHIMPNNEYL------LVMKGAPERILDRCSTMKQGDKD 514
K + F S D+ +S++ P + +KGAPE ++DRC+ ++ G
Sbjct: 476 RQLMKKEFTLEF-SRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 534
Query: 515 VELDAKNRHEVEEILEQLGNYGE--RVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRF 572
V + + ++ ++++ G + R L PP + + S + T L F
Sbjct: 535 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE-TDLTF 593
Query: 573 LGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIA 632
+G++ M+ CR AGIRVIM+TGD+ TA AI + +GI E E++A
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEN----EEVA 649
Query: 633 KRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGC 692
R G D+ + R R FAR P+ K IVE
Sbjct: 650 DR----------------AYTGREFDDLPLAEQREACR--RACCFARVEPSHKSKIVEYL 691
Query: 693 QRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEG 752
Q I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEEG
Sbjct: 692 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 753 RLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYE 812
R I++N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L +
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 810
Query: 813 KAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIG 845
+ DIM R PR+P + L++G LF Y IG
Sbjct: 811 PPDLDIMDRPPRSP-KEPLISG-WLFFRYMAIG 841
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 342 bits (876), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 271/873 (31%), Positives = 419/873 (47%), Gaps = 96/873 (10%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H ++ A + S GLT Q K+ L + G N L + W ++++ + +
Sbjct: 5 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 64
Query: 93 LWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN 152
L A + F+ L F E+ + ++L+ + I I QE + +++ K
Sbjct: 65 LLLAACISFV--LAWFEEGEETITAFVEPFVILL-ILIANAIVGVWQERNAENAIEALKE 121
Query: 153 MVPQYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRI--IESHGFKVDNSSLT 208
P+ V R +K + I + ++V GD+V+V GD++PADIRI I+S +VD S LT
Sbjct: 122 YEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILT 181
Query: 209 GEAEPQARNAS---ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSG 265
GE+ ++ + + + KN+ F TN G A GIV G +T +G+I +
Sbjct: 182 GESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAA 241
Query: 266 LESGDTPIAKEIHHF---------MHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
E TP+ +++ F + ++ W I +G F G +WI I+ I
Sbjct: 242 TEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIG---HFNDPVHGGSWIRGAIYYFKI 298
Query: 317 IVANV----PEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQ 372
VA PEGL A +T CL+L +RMA KN +V+ L +VETLG TS ICS KTGTLT
Sbjct: 299 AVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTT 358
Query: 373 NRMTVTHL----SFDKEVFEVDYFK------DPTGLIEK----VRN--MSSYKDLTLAGS 416
N+M+V + D + ++ F P G + K +R+ +L +
Sbjct: 359 NQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICA 418
Query: 417 LCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHK----------- 465
LCN + N+ K E +G+A+E A+ E E RN K
Sbjct: 419 LCNDSSLDFNETKGVY---EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 475
Query: 466 -----KALEIPFNSTDKYQVSIHIMPNNEYL------LVMKGAPERILDRCSTMKQGDKD 514
K + F S D+ +S++ P + +KGAPE ++DRC+ ++ G
Sbjct: 476 RQLMKKEFTLEF-SRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 534
Query: 515 VELDAKNRHEVEEILEQLGNYGE--RVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRF 572
V + + ++ ++++ G + R L PP + + S + T L F
Sbjct: 535 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE-TDLTF 593
Query: 573 LGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIA 632
+G++ M+ CR AGIRVIM+TGD+ TA AI + +GI E E++A
Sbjct: 594 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGEN----EEVA 649
Query: 633 KRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGC 692
R G D+ + R R FAR P+ K IVE
Sbjct: 650 DR----------------AYTGREFDDLPLAEQREACR--RACCFARVEPSHKSKIVEYL 691
Query: 693 QRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEG 752
Q I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEEG
Sbjct: 692 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 750
Query: 753 RLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYE 812
R I++N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L +
Sbjct: 751 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 810
Query: 813 KAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIG 845
+ DIM R PR+P + L++G LF Y IG
Sbjct: 811 PPDLDIMDRPPRSP-KEPLISG-WLFFRYMAIG 841
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 192 bits (489), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 192/778 (24%), Positives = 341/778 (43%), Gaps = 126/778 (16%)
Query: 19 SKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAW 78
S L+++K E +D K+P++++ + + S E GLT+ + + + GPN L K++
Sbjct: 2 SSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEKKESK-- 57
Query: 79 VILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYS 138
LLK L ++ L W V+ A + + D + + ++ + +I S+
Sbjct: 58 --LLKFLGFMWNPLSW---VMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFI 112
Query: 139 QEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESH 198
+E + + + V+RDG+ ++ LV GD+V +K GD IPAD R++E
Sbjct: 113 EENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGD 172
Query: 199 GFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGR 258
KVD S+LTGE+ P ++ + F + +G + +VI G +T G+
Sbjct: 173 PLKVDQSALTGESLPVTKHPGQEV----------FSGSTCKQGEIEAVVIATGVHTFFGK 222
Query: 259 IAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYA------------- 305
A L ++ HF +++A F S A+G
Sbjct: 223 AAHLVDS--------TNQVGHFQKVLTAIG-----NFCICSIAIGMVIEIIVMYPIQRRK 269
Query: 306 WIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSD 365
+ D + L+ +++ +P + ++V +++ + R++ + + K + A+E + +CSD
Sbjct: 270 YRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSD 329
Query: 366 KTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTP 425
KTGTLT N+++V DK + EV + K +EK + L ++ +R E
Sbjct: 330 KTGTLTLNKLSV-----DKNLVEV-FCKG----VEK-------DQVLLFAAMASRVE--- 369
Query: 426 NQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIM 485
NQ DA +AA++ + D E R ++ +PFN DK +I
Sbjct: 370 NQ------------DAIDAAMVGM----LADPKEARAGIREVHFLPFNPVDKRTALTYID 413
Query: 486 PNNEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDY 545
+ + V KGAPE+IL+ + + D+ +V I+++ G R L
Sbjct: 414 GSGNWHRVSKGAPEQILE----LAKASNDLS------KKVLSIIDKYAERGLRSLAVARQ 463
Query: 546 ALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTG 605
+P E + P P F+GL+ + + + G+ V M+TG
Sbjct: 464 VVP--------EKTKESPGAPW---EFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITG 512
Query: 606 DHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQL 665
D AI K G RR +++ P + + + L + E+L
Sbjct: 513 DQ----LAIGKETG--------------RRLGMGTNMYPSSALLGTHKDANLASIPVEEL 554
Query: 666 ENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITG 725
+ FA P K IV+ Q IV +TGDGVND+PALKKADIGIA+
Sbjct: 555 -----IEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DA 608
Query: 726 SDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVI 783
+D ++ +D++L + + I++ V R IF +K Y ++ + + F++ +I
Sbjct: 609 TDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALI 666
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 192 bits (488), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 138/211 (65%), Gaps = 4/211 (1%)
Query: 372 QNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQ 431
QN MTV H+ FD ++ E D ++ +G + + +++ L+ LCNRA F NQE +
Sbjct: 1 QNPMTVAHMWFDNQIHEADTTENQSG-VSFDKTSATWFALSRIAGLCNRAVFQANQENLP 59
Query: 432 ILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNN--- 488
ILKR V GDASE+A+LK E+ G V+E R ++ K +EIPFNST+KYQ+SIH PN
Sbjct: 60 ILKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASEP 119
Query: 489 EYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALP 548
++LLVMKGAPERILDRCS++ K+ LD + + + +LG GERVLGFC LP
Sbjct: 120 KHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLP 179
Query: 549 PAKFPAGFELKSDPPNFPLTGLRFLGLMSMI 579
+FP GF+ +D NFP+ L F+GL+SMI
Sbjct: 180 DEQFPEGFQFDTDEVNFPVDNLCFVGLISMI 210
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/207 (47%), Positives = 131/207 (63%), Gaps = 3/207 (1%)
Query: 375 MTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILK 434
MTV H+ FD ++ E D +D +G R+ ++ L+ LCNRA F QE I + K
Sbjct: 2 MTVAHMWFDNQIHEADTTEDQSGATFDKRS-PTWTALSRIAGLCNRAVFKAGQENISVSK 60
Query: 435 REVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNN--EYLL 492
R+ GDASE+A+LK EL+ G V + R+R+ K EI FNST+KYQ+SIH +N ++L
Sbjct: 61 RDTAGDASESALLKCIELSCGSVRKMRDRNPKVAEISFNSTNKYQLSIHEREDNPQSHVL 120
Query: 493 VMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKF 552
VMKGAPERILDRCS++ K++ LD + + + +LG GERVLGFC LP KF
Sbjct: 121 VMKGAPERILDRCSSILVQGKEIPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKF 180
Query: 553 PAGFELKSDPPNFPLTGLRFLGLMSMI 579
P GF+ +D NFP L F+GLMSMI
Sbjct: 181 PRGFKFDTDELNFPTEKLCFVGLMSMI 207
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 200/784 (25%), Positives = 338/784 (43%), Gaps = 137/784 (17%)
Query: 45 QTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAY 104
QT GLTS + Q + G N + K+ LK L G + I +
Sbjct: 81 QTDTRVGLTSEEVVQRRRKYGLNQMKEEKENH----FLKFL----------GFFVGPIQF 126
Query: 105 LIEFHISEDASKDNLWLGI-VLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRD 163
++E A ++ W+ V+ + ++ + + QE ++ I+D K + A V+RD
Sbjct: 127 VMEGAAVLAAGLED-WVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRD 185
Query: 164 GQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGF-KVDNSSLTGEAEPQARNASEST 222
G K I + E+V GD++ V+ G IPAD RI+ F +VD S+LTGE +
Sbjct: 186 GTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGE-----------S 234
Query: 223 TIVLEAKNLAFFSTNAVE-GTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFM 281
V + K F+++AV+ G A ++ GDNT +GR A L + G + ++
Sbjct: 235 LAVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGGSGHFTEVLNGIG 294
Query: 282 HLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMA 341
++ IF + + SF + + F + I + VP GL A VT +++ A +A
Sbjct: 295 TILLILVIFTLLIVWVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLA 354
Query: 342 SKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEK 401
K +V+ L A+E+L +CSDKTGTLT+N++++ DP
Sbjct: 355 KKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSL---------------HDPY----T 395
Query: 402 VRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFR 461
V + +DL L L +++K I DA + A LK +++
Sbjct: 396 VAGVDP-EDLMLTACLA------ASRKKKGI-------DAIDKAFLK--------SLKYY 433
Query: 462 NRHKKALEI-------PFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDRCSTMKQGDKD 514
R K L PF+ K V++ P E + +KGAP +L K
Sbjct: 434 PRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVL----------KT 483
Query: 515 VELDAKNRHEVEEILE-QLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFL 573
VE D EV++ + ++ + R GF + + +E+ L
Sbjct: 484 VEEDHPIPEEVDQAYKNKVAEFATR--GFRSLGVARKRGEGSWEI--------------L 527
Query: 574 GLMSMIXXXXXXXXXXXXKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETL---ED 630
G+M + + ++ G+ + M+TGD AVGI E S L +
Sbjct: 528 GIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGD----------AVGIARETSRQLGLGTN 577
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
I R+ + DM ++ + + FA P K ++VE
Sbjct: 578 IYNAERLGLGG---------------GGDMPGSEVYDFVEAADG--FAEVFPQHKYNVVE 620
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q+ G +VA+TGDGVND+P+LKKAD GIA+ SD ++ AD++ L +I+ ++
Sbjct: 621 ILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALK 679
Query: 751 EGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLA 810
R IF + + Y +A ++ + FL + + L + ++ I + D+ +++A
Sbjct: 680 TSRQIFHRMYAYVVYRIALSI-HLEIFLGLWIAILNRSLNIELVVFIAIFADV-ATLAIA 737
Query: 811 YEKA 814
Y+ A
Sbjct: 738 YDNA 741
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 124/282 (43%), Gaps = 36/282 (12%)
Query: 124 VLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIR-DGQKKTILSSELVRGDVVDV 182
V+ T+ ++ + ++ + + +VP+ A+ I+ DG ++ + + GD++ V
Sbjct: 193 VITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRV 252
Query: 183 KFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGT 242
+ G++IP D + E F VD S +TGE P A+ AS + I F A+
Sbjct: 253 RPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEAS-AKVIGATINQTGSFVMKALH-- 308
Query: 243 AKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSF-- 300
G +T++ RI + S + PI + +S W + + LSF
Sbjct: 309 -------VGSDTMLARIVQMVSDAQRSRAPIQR----LADTVSGWFVPAVILVAVLSFIV 357
Query: 301 --------ALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEA 352
AL Y I AV LI I GL +++ + + + A ++K+ EA
Sbjct: 358 WALLGPQPALSYGLIAAVSVLI--IACPCALGLATPMSIMVGV--GKGAQSGVLIKNAEA 413
Query: 353 VETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKD 394
+E + +T+ DKTGTLT+ +T + D D+ +D
Sbjct: 414 LERMEKVNTLVVDKTGTLTEGHPKLTRIVTD------DFVED 449
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 676 VFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADM 735
V A P K IV + G IVA+ GDGVND+PAL KADIGIAMG TG+DV+ ++A +
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGIAMG-TGTDVAIESAGV 654
Query: 736 ILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAIL 795
LL + I N+++++ + N V+G+PL GV+ L
Sbjct: 655 TLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYN-----------VLGVPLAAGVLYPL 703
Query: 796 CIDLGTDMWPAISLA 810
L + M A ++A
Sbjct: 704 TGLLLSPMIAAAAMA 718
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++
Sbjct: 497 DLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 554
Query: 734 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNV 771
D++L+ D+ +V ++ R +K++I + L NV
Sbjct: 555 DIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 140 EAKS-ARIMDSFKNMV---PQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRII 195
EA++ +R ++ K +V + A VIRDG++ + E+ GD+V V+ G++IP D ++
Sbjct: 113 EARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV 172
Query: 196 ESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTV 255
E + VD S ++GE P ++ + F +T G K G T+
Sbjct: 173 EGESY-VDESMISGEPVPVLKSKGDEV----------FGATINNTGVLKIRATRVGGETL 221
Query: 256 MGRIAGLTSGLESGDTPIA----KEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVI 311
+ +I L PI K + +F+ + AI + ++F++ A + A
Sbjct: 222 LAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---PLLFAFT 278
Query: 312 FLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT 371
LI ++V P L++ + A ++K+ +A+E + + DKTGTLT
Sbjct: 279 TLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 338
Query: 372 QNRMTVTHL 380
+ + VT L
Sbjct: 339 KGKPEVTDL 347
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++
Sbjct: 575 DLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 632
Query: 734 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNV 771
D++L+ D+ +V ++ R +K++I + L NV
Sbjct: 633 DIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 140 EAKS-ARIMDSFKNMV---PQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRII 195
EA++ +R ++ K +V + A VIRDG++ + E+ GD+V V+ G++IP D ++
Sbjct: 191 EARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVV 250
Query: 196 ESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTV 255
E + VD S ++GE P ++ + F +T G K G T+
Sbjct: 251 EGESY-VDESMISGEPVPVLKSKGDEV----------FGATINNTGVLKIRATRVGGETL 299
Query: 256 MGRIAGLTSGLESGDTPIA----KEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVI 311
+ +I L PI K + +F+ + AI + ++F++ A + A
Sbjct: 300 LAQIVKLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHA---PLLFAFT 356
Query: 312 FLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT 371
LI ++V P L++ + A ++K+ +A+E + + DKTGTLT
Sbjct: 357 TLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLT 416
Query: 372 QNRMTVTHL 380
+ + VT L
Sbjct: 417 KGKPEVTDL 425
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++
Sbjct: 203 DLVIAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 260
Query: 734 DMILLDDNFASIVTGVEEGRLIFDNLK 760
D++L+ D+ +V ++ R +K
Sbjct: 261 DIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 337 AKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHL 380
+++ A ++K+ +A+E + + DKTGTLT+ + VT L
Sbjct: 10 SRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL 53
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++
Sbjct: 203 DLVIAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 260
Query: 734 DMILLDDNFASIVTGVEEGRLIFDNLK 760
D++L+ D+ +V ++ R +K
Sbjct: 261 DIVLIRDDLRDVVAAIQLSRKTMSKIK 287
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 337 AKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHL 380
+++ A ++K+ +A+E + + DKTGTLT+ + VT L
Sbjct: 10 SRKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDL 53
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++
Sbjct: 183 DLVIAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESG 240
Query: 734 DMILLDDNFASIVTGVEEGR 753
D++L+ D+ +V ++ R
Sbjct: 241 DIVLIRDDLRDVVAAIQLSR 260
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
FA P +K V+ Q+ + A+ GDGVND+PAL +AD+GIA+G G+DV+ +TAD++
Sbjct: 187 FAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIV 244
Query: 737 LLDDNFASIVTGVEEGRLIFDNLK 760
L+ ++ + VE R + L+
Sbjct: 245 LVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
FA P +K V+ Q+ + A+ GDGVND+PAL +AD+GIA+G G+DV+ +TAD++
Sbjct: 187 FAEVLPHEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIV 244
Query: 737 LLDDNFASIVTGVEEGRLIFDNL 759
L+ ++ + VE R +
Sbjct: 245 LVRNDPRDVAAIVELSRKTYSKF 267
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 674 EIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTA 733
++V A P QK V+ Q +VA GDG+ND+PAL +AD+GIA+G +
Sbjct: 62 DLVIAEVLPHQKSEEVKKLQ-AKEVVAFVGDGINDAPALAQADLGIAVG---------SG 111
Query: 734 DMILLDDNFASIVTGVE 750
D++L+ D+ +V ++
Sbjct: 112 DIVLIRDDLRDVVAAIQ 128
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
++ SP K+ I+E ++ G V + GDGVND+ AL AD+ +AMG G D+SK AD+I
Sbjct: 179 YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADII 237
Query: 737 LLDDNFASIV 746
L+ ++ +++
Sbjct: 238 LVSNDIGTLL 247
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
++ SP K+ I+E ++ G V + GDGVND+ AL AD+ +AMG G D+SK AD+I
Sbjct: 179 YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADII 237
Query: 737 LLDDNFASIV 746
L+ ++ +++
Sbjct: 238 LVSNDIGTLL 247
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
++ SP K+ I+E ++ G V + GDGVND+ AL AD+ +AMG G D+SK AD+I
Sbjct: 179 YSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADII 237
Query: 737 LLDDNFASIV 746
L+ ++ +++
Sbjct: 238 LVSNDIGTLL 247
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 156 QYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEP 213
+ A VIRDG++ + E+ GD+V V+ G++IP D ++E + VD S ++GE P
Sbjct: 12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 68
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 173 ELV-RGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQAR 216
ELV RGD++ V G + P D R+IE H VD S +TGEA P A+
Sbjct: 40 ELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAK 83
>pdb|1BG5|A Chain A, Crystal Structure Of The Ankyrin Binding Domain Of
Alpha-Na, K-Atpase As A Fusion Protein With Glutathione
S-Transferase
Length = 254
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 136 SYSQEAKSARIMDSFKNMVPQYANV 160
SY QEAKS++IM+SFKNMVPQ A V
Sbjct: 227 SYYQEAKSSKIMESFKNMVPQQALV 251
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 462 NRHKKALEIPFNSTDKYQVSIHIMPNNEY-LLVMKGAPERILDRCSTMKQGDKDVELDAK 520
+R +K EIPF+ ++ ++S+ + N E+ LV KGA + IL+ CS ++ + V LD
Sbjct: 54 SRWQKIDEIPFD-FERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDI 112
Query: 521 NRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTG 569
+++ + + L G RV+ LP + G ++D + L G
Sbjct: 113 MLRKIKRVTDTLNRQGLRVVAVATKYLPARE---GDYQRADESDLILEG 158
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 322 PEGLLATVTVCLSLTAKRMASKNCVVKHL 350
PEGL A +T CL+L +RMA KN +V+ L
Sbjct: 20 PEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 703 GDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
GDG ND P LK A IG+AMG S+ + AD +
Sbjct: 217 GDGGNDIPMLKAAGIGVAMG-NASEKVQSVADFV 249
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
V GDG ND +K A +G+AMG + K+ AD I L ++ + +E
Sbjct: 216 VIAIGDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|2VOY|K Chain K, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 32
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 751 EGRLIFDNLKKSIAYTLASNVPEI 774
EGR I++N+K+ I Y ++SNV E+
Sbjct: 1 EGRAIYNNMKQFIRYLISSNVGEV 24
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 703 GDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
GDG ND L+ A IG+AMG DV K AD +
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 703 GDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
GDG ND L+ A IG+AMG DV K AD +
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYV 242
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 612 KAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRT 671
KA IIS G DI +R LD S T+ I+ ++L D T + N
Sbjct: 192 KAKGFKTAIISGGL----DIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMN---- 243
Query: 672 HREIVFARTSPTQKLHIVEGCQRLGAI---VAVTGDGVNDSPALKKADIGIA 720
+ +K +V+ RL + GDG ND P L+ A GIA
Sbjct: 244 ---------AANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIA 286
>pdb|2V40|A Chain A, Human Adenylosuccinate Synthetase Isozyme 2 In Complex
With Gdp
Length = 459
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 197 SHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVM 256
S G + +L ++ P+AR T+VL A+ EG K + +L D ++
Sbjct: 8 SSGVDLGTENLYFQSMPRARPGGNRVTVVLGAQ-------WGDEGKGKVVDLLAQDADIV 60
Query: 257 GRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFF 296
R G G +G T + + + HL+ + I VT F
Sbjct: 61 CRCQG---GNNAGHTVVVDSVEYDFHLLPSGIINPNVTAF 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,208,610
Number of Sequences: 62578
Number of extensions: 1204734
Number of successful extensions: 2716
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 70
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)