RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3624
(1010 letters)
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced by
a phylogenetic tree. Experimental evidence is needed to
determine whether these sequences represent ATPases with
conserved function. Aside from fragments, other sequences
between trusted and noise appear to be bacterial ATPases
of unclear lineage, but most likely calcium pumps [Energy
metabolism, ATP-proton motive force interconversion].
Length = 997
Score = 1617 bits (4190), Expect = 0.0
Identities = 643/998 (64%), Positives = 782/998 (78%), Gaps = 4/998 (0%)
Query: 16 KSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKT 75
K LD LKKE+E+DDHKL L +L +Y T KGL++A+A + L RDGPN+LTP T
Sbjct: 1 KKKRDLDELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTT 60
Query: 76 PAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIF 135
P WV + LF GFS+LLW GA+LCF+AY I+ E+ DNL+LG+VL V IITG F
Sbjct: 61 PEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCF 120
Query: 136 SYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRII 195
SY QEAKS++IM+SFKNMVPQ A VIRDG+K +I + ++V GD+V+VK GDRIPAD+RII
Sbjct: 121 SYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRII 180
Query: 196 ESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTV 255
+ G KVDNSSLTGE+EPQ R+ + LE +N+AFFSTN VEGTA+GIV+ GD TV
Sbjct: 181 SAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTV 240
Query: 256 MGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIG 315
MGRIA L SGLE+G TPIA EI HF+H+I+ A+FLGV+FF LS LGY W++AVIFLIG
Sbjct: 241 MGRIASLASGLENGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYTWLEAVIFLIG 300
Query: 316 IIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRM 375
IIVANVPEGLLATVTVCL+LTAKRMA KNC+VK+LEAVETLGSTSTICSDKTGTLTQNRM
Sbjct: 301 IIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRM 360
Query: 376 TVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKR 435
TV H+ FD ++ E D +D +G + ++ +++ L+ LCNRA F QE + ILKR
Sbjct: 361 TVAHMWFDNQIHEADTTEDQSG-VSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKR 419
Query: 436 EVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPN---NEYLL 492
V GDASE+A+LK EL +G V+E R R+ K +EIPFNST+KYQ+SIH + +LL
Sbjct: 420 AVAGDASESALLKCIELCLGSVMEMRERNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLL 479
Query: 493 VMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKF 552
VMKGAPERIL+RCS++ K+ LD + + + +LG GERVLGFC LP +F
Sbjct: 480 VMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERVLGFCHLYLPDEQF 539
Query: 553 PAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAK 612
P GF+ +D NFP L F+GL+SMIDPPR AVPDAV KCRSAGI+VIMVTGDHP+TAK
Sbjct: 540 PEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAK 599
Query: 613 AIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTH 672
AIAK VGIISEG+ET+EDIA R +PVS ++PR++ V+ GS L+DMT+EQL+ +L+ H
Sbjct: 600 AIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEILKYH 659
Query: 673 REIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQT 732
EIVFARTSP QKL IVEGCQR GAIVAVTGDGVNDSPALKKADIG+AMGI GSDVSKQ
Sbjct: 660 TEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVSKQA 719
Query: 733 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVV 792
ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTL SN+PEITPFL+FI+ IPLPLG +
Sbjct: 720 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTI 779
Query: 793 AILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAG 852
ILCIDLGTDM PAISLAYEKAESDIM+R PRNP TDKLV +L+ +AYGQIG+I+A G
Sbjct: 780 TILCIDLGTDMVPAISLAYEKAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGG 839
Query: 853 FFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIA 912
FF+YFVI+A+NG++P L+G+R +W+ INDLEDSYGQEWTY RK +E+TCHTAFF++
Sbjct: 840 FFTYFVILAENGFLPLHLVGLRVQWDDRWINDLEDSYGQEWTYEQRKYVEFTCHTAFFVS 899
Query: 913 IVVVQWADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRA 972
IVVVQWADL+ICKTR NS+ QGM N +L FG+ ET A +SYCPGM L+ YP++
Sbjct: 900 IVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKP 959
Query: 973 EWWLPAVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
WW A P++++IF+YDE R+ +R +P GWVE+ETYY
Sbjct: 960 TWWFCAFPYSLLIFVYDEIRKLIIRRNPGGWVEKETYY 997
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 668 bits (1726), Expect = 0.0
Identities = 308/960 (32%), Positives = 479/960 (49%), Gaps = 97/960 (10%)
Query: 37 LKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTG 96
+L TS GL+ + K+ L + GPN L KK L+ + F +LL
Sbjct: 30 RNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVA 89
Query: 97 AVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQ 156
A+L A++ D IV++ V +I + + QE ++ + +++ K M
Sbjct: 90 ALL--SAFV--GDWV-----DAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSP 140
Query: 157 YANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQAR 216
A V+RDG+ I +SELV GD+V ++ GD +PAD+R++ES +VD S+LTGE+ P +
Sbjct: 141 KAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEK 200
Query: 217 NA----SESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTP 272
A + L+ N+ F T V G AKGIV+ G T G+IA L + TP
Sbjct: 201 QALPLTKSDAPLGLDRDNMLFSGTTVVSGRAKGIVVATGFETEFGKIARLLPTKKEVKTP 260
Query: 273 IAKEIHHFMHLISAWAIFLGVTFFFLSFALGYA-WIDAVIFLIGIIVANVPEGLLATVTV 331
+ ++++ + A+ LG F + G +++ + + + VA VPEGL A VT+
Sbjct: 261 LQRKLNKLGKFLLVLALVLGALVFVVGLFRGGNGLLESFLTALALAVAAVPEGLPAVVTI 320
Query: 332 CLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDY 391
L+L A+RMA N +V+ L A+ETLGS ICSDKTGTLTQN+MTV + + ++D
Sbjct: 321 ALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGGGKDIDD 380
Query: 392 FKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSE 451
+ +++ + LA +LCN TP + GD +E A+++F+E
Sbjct: 381 --------KDLKDSPALLRFLLAAALCN--SVTPEKNGWYQ-----AGDPTEGALVEFAE 425
Query: 452 LA--IGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDRCSTMK 509
D+ + EIPF+S K I +Y+L +KGAPE IL+RC ++
Sbjct: 426 KLGFSLDLSGLEVEYPILAEIPFDSERKRMSVIVKTDEGKYILFVKGAPEVILERCKSI- 484
Query: 510 QGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTG 569
+ L + +EE +++L + G RVL L A+ K D + +
Sbjct: 485 --GELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAE-------KDDEVDEIESD 535
Query: 570 LRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLE 629
L FLGL + DPPR V +A+ + R AGI+V M+TGDH TA AIAK GI +E L
Sbjct: 536 LVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESAL- 594
Query: 630 DIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIV 689
VI G+ L ++ E+L ++ VFAR SP QK IV
Sbjct: 595 ---------------------VIDGAELDALSDEELAELVEELS--VFARVSPEQKARIV 631
Query: 690 EGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGV 749
E Q+ G +VA+TGDGVND+PALK AD+GIAMG G+D +K+ AD++LLDDNFA+IV V
Sbjct: 632 EALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEAADIVLLDDNFATIVLAV 691
Query: 750 EEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIP-LPLGVVAILCIDLGTDMWPAIS 808
EGR ++ N+KK I Y L+ NV E+ L++ + + LPL + +L I+L TD PA++
Sbjct: 692 VEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALA 751
Query: 809 LAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSYFVIMAQNGWMPD 868
L E ESD+M+R PR P L K+ + IG++ A ++ + +
Sbjct: 752 LGVEDPESDVMKRPPRGPEE-GLFNRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTL 810
Query: 869 KLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWADLLICKTRY 928
L +A ++ A F +V++Q L ++R
Sbjct: 811 GLDLFQALLQTTA----------------------------FTVLVLIQLLLTLAVRSRG 842
Query: 929 NSLVHQGM-NNWVLNFGIVFETVAACIVSYCPGM-DEILKTYPVRAEWWLPAVPFAIVIF 986
+ + +N L ++ + ++ + P + +I + P+ WL A+ A+++
Sbjct: 843 RPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLL 902
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 467 bits (1202), Expect = e-149
Identities = 260/820 (31%), Positives = 417/820 (50%), Gaps = 86/820 (10%)
Query: 35 LPLKDLCARYQTSAEKGLTSAQ-AKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLL 93
L +++ C++ QT + GL S+Q A G N + W L + +LL
Sbjct: 7 LSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILL 66
Query: 94 WTG-AVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN 152
AV+ I+ +S + L I++V + QE +S + +++
Sbjct: 67 LIASAVISVFMGNIDDAVS-------ITLAILIVVTV------GFVQEYRSEKSLEALNK 113
Query: 153 MVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAE 212
+VP ++IR+G+ + +L+S LV GD+V + GDR+PAD+RI+E+ +D S+LTGE
Sbjct: 114 LVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETT 173
Query: 213 PQAR--NASESTTIV--LEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLES 268
P ++ + T E N+AF T G KGIV+ G NT G + + +E
Sbjct: 174 PVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMMQAIEK 233
Query: 269 GDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGLLAT 328
TP+ K + +S + + + + G W++ + + VA +PEGL
Sbjct: 234 PKTPLQKSMDLLGKQLSLVSFGVIGVICLVGWFQGKDWLEMFTISVSLAVAAIPEGLPII 293
Query: 329 VTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTH------LSF 382
VTV L+L RM+ K +V+ L +VETLGS + ICSDKTGTLT+N MTVT L
Sbjct: 294 VTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHT 353
Query: 383 DKEVFEVDYFKD--PTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGD 440
++ F + G + + + AG+LCN A+F + + +G+
Sbjct: 354 MLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNAKFRNEADTL-------LGN 406
Query: 441 ASEAAILKFSE-LAIGDVVEFRNRHKKALEIPFNSTDKYQ-VSIHIMPNNEYLLVMKGAP 498
++ A+++ + D+ R + + E+PF+S K+ V + + MKGA
Sbjct: 407 PTDVALIELLMKFGLDDL---RETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAY 463
Query: 499 ERILDRCST-MKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFE 557
E++L C+ K+ K + L + R ++E ++ + G RV+ F A P +
Sbjct: 464 EQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRVIAF-------ASGPEKGQ 516
Query: 558 LKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKA 617
L FLGL+ + DPPRP V +AV + G+R+IM+TGD TA +IA+
Sbjct: 517 LT------------FLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARR 564
Query: 618 VGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVF 677
+G+ S + + G L M +QL ++ + VF
Sbjct: 565 LGM-------------------PSKTSQSVS-----GEKLDAMDDQQLSQIVP--KVAVF 598
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
AR SP K+ IV+ Q+ G +VA+TGDGVND+PALK ADIG+AMG TG+DV+K+ ADMIL
Sbjct: 599 ARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMIL 658
Query: 738 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCI 797
DD+FA+I++ +EEG+ IF+N+K I + L+++V ++ + ++G P PL + IL I
Sbjct: 659 TDDDFATILSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALATLMGFPNPLNAMQILWI 718
Query: 798 DLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLL 837
++ D PA SL E + D+MR+ PR P DK++T L+
Sbjct: 719 NILMDGPPAQSLGVEPVDKDVMRKPPR-PRNDKILTKDLI 757
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 459 bits (1182), Expect = e-146
Identities = 296/929 (31%), Positives = 468/929 (50%), Gaps = 107/929 (11%)
Query: 124 VLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVK 183
V++ + + I QE + + +++ K ++A V+RDG+ I + +LV GD+V++
Sbjct: 41 VILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRDGRWSVIKAKDLVPGDIVELA 100
Query: 184 FGDRIPADIRIIESHGFKVDNSSLTGEAEP---QARNASESTTIVLEAKNLAFFSTNAVE 240
GD++PADIR++ +VD S LTGE+ + + + + KN+ F T V
Sbjct: 101 VGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVA 160
Query: 241 GTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLIS---------AWAIFL 291
G A+G+V+ G +T +G+I E DTP+ K++ F L+S W I +
Sbjct: 161 GKARGVVVRTGMSTEIGKIRDEMRAAEQEDTPLQKKLDEFGELLSKVIGLICILVWVINI 220
Query: 292 GVTFFFLSFALGYAWIDAVIFLIGIIVA----NVPEGLLATVTVCLSLTAKRMASKNCVV 347
G F ALG WI I+ I VA +PEGL A +T CL+L ++MA KN +V
Sbjct: 221 G---HFNDPALGGGWIQGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKKNAIV 277
Query: 348 KHLEAVETLGSTSTICSDKTGTLTQNRMTVTHL-SFDKEVFEVDYFK------DPTGLI- 399
+ L +VETLG T+ ICSDKTGTLT N+M+V + + D ++ F P G +
Sbjct: 278 RKLPSVETLGCTTVICSDKTGTLTTNQMSVCKVVALDPSSSSLNEFCVTGTTYAPEGGVI 337
Query: 400 --EKVRNMSSYKDL-TLA--GSLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSEL-- 452
+ L LA +LCN + N+ K K +G+A+EAA+ E
Sbjct: 338 KDDGPVAGGQDAGLEELATIAALCNDSSLDFNERKGVYEK---VGEATEAALKVLVEKMG 394
Query: 453 --------------AIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAP 498
A+G + ++ KK + F S D+ +S+ P+ L +KGAP
Sbjct: 395 LPATKNGVSSKRRPALGCNSVWNDKFKKLATLEF-SRDRKSMSVLCKPSTGNKLFVKGAP 453
Query: 499 ERILDRCSTMKQGD-KDVELDAKNRHEVEEILEQLGNY-GERVLGFCDYALPPAKFPAGF 556
E +L+RC+ + GD + V L K ++ + +++++G R L +P P
Sbjct: 454 EGVLERCTHILNGDGRAVPLTDKMKNTILSVIKEMGTTKALRCLALAFKDIPD---PREE 510
Query: 557 ELKSDPPNFPL--TGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAI 614
+L SDP NF + L F+G++ M+DPPRP V DA+ KCR+AGIRVIM+TGD+ TA+AI
Sbjct: 511 DLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAI 570
Query: 615 AKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHRE 674
+ +GI S ED+ + S RE +
Sbjct: 571 CRRIGIFSPD----EDVTFK------SFTGREF------------DEMGPAKQRAACRSA 608
Query: 675 IVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTAD 734
++F+R P+ K +VE Q G IVA+TGDGVND+PALKKADIGIAMG +G++V+K+ +D
Sbjct: 609 VLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-SGTEVAKEASD 667
Query: 735 MILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAI 794
M+L DDNFA+IV VEEGR I++N+K+ I Y ++SN+ E+ + +GIP L V +
Sbjct: 668 MVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNIGEVVCIFLTAALGIPEGLIPVQL 727
Query: 795 LCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGV---IEACA 851
L ++L TD PA +L + + DIM + PR P + L+TG LF Y +GV +
Sbjct: 728 LWVNLVTDGLPATALGFNPPDKDIMWKPPRRP-DEPLITG-WLFFRYLVVGVYVGLATVG 785
Query: 852 GFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFI 911
GF ++++ + D ED + + + T
Sbjct: 786 GFVWWYLL---THFTGCDE------DSFTTCPDFEDP--DCYVFEGK----QPARTISLS 830
Query: 912 AIVVVQWADLLICKTRYNSLVHQG--MNNWVLNFGIVFETVAA-CIVSYCPGMDEILKTY 968
+VV++ + L + SL+ +N W++ G + ++A ++ Y P + I
Sbjct: 831 VLVVIEMFNALNALSEDQSLLRMPPWVNKWLI--GAICLSMALHFLILYVPFLSRIFGVT 888
Query: 969 PVRAEWWLPAVPFAIVIFIYDECRRFWLR 997
P+ WL + ++ + + DE +F+ R
Sbjct: 889 PLSLTDWLMVLKLSLPVILVDEVLKFFSR 917
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 395 bits (1017), Expect = e-126
Identities = 205/678 (30%), Positives = 299/678 (44%), Gaps = 141/678 (20%)
Query: 124 VLVTVCIITGIFSYSQEAKSARIMDSFKNMV--PQYANVIRDGQKKTILSSELVRGDVVD 181
++ + ++ + Q+ K+ I+ S + + + A V+R+G K+ I + +LV GDVV
Sbjct: 1 FILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNGWKE-IPAKDLVPGDVVL 59
Query: 182 VKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEG 241
VK G+ +PAD ++ VD S+LTGE+ P + A + T +L F T G
Sbjct: 60 VKSGETVPADGVLLSG-SCFVDESNLTGESNPVLKTALKETQSGTITGDLVFAGTYVFGG 118
Query: 242 TAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFA 301
T +V G T +GRIA + TP+ + + I + L FL
Sbjct: 119 TLIVVVTPTGILTTVGRIAVVVKTGFETRTPLQSKRDRLENFIFILFLLLLALAVFLYLF 178
Query: 302 LG----YAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLG 357
+ + A++ + ++V VP L A VTV L++ R+A K +V++L A+E LG
Sbjct: 179 IRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEELG 238
Query: 358 STSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSL 417
+CSDKTGTLT+N+MT+ + D +
Sbjct: 239 KVDYLCSDKTGTLTKNKMTLQGVYIDGGKEDNSSSLVACDNNYLS--------------- 283
Query: 418 CNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDK 477
GD E A+LK +EL +K PF+S K
Sbjct: 284 ---------------------GDPMEKALLKSAELVGKADKG-NKEYKILDVFPFSSVLK 321
Query: 478 YQVSIHIMPNNEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGE 537
I P+ LL +KGAPE IL+RC + EE +L G
Sbjct: 322 RMSVIVETPDGSDLLFVKGAPEFILERC-----------------NNYEEKYLELARQGL 364
Query: 538 RVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAG 597
RVL F L L FLGL++ DP RP + + + ++AG
Sbjct: 365 RVLAFASKELED-------------------DLEFLGLITFEDPLRPDAKETIEELKAAG 405
Query: 598 IRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSIL 657
I+V+M+TGD+ +TAKA IAK +
Sbjct: 406 IKVVMITGDNVLTAKA-----------------IAKELGI-------------------- 428
Query: 658 RDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADI 717
VFAR SP QKL IVE Q+ G IVA+TGDGVND+PALKKAD+
Sbjct: 429 -----------------DVFARVSPEQKLQIVEALQKKGHIVAMTGDGVNDAPALKKADV 471
Query: 718 GIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPF 777
GIAMG +K AD++LLDD+ ++IV V+EGR IF N+K +I + +A N+ I
Sbjct: 472 GIAMG------AKAAADIVLLDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLA 525
Query: 778 LMFIVIGIPLPLGVVAIL 795
L+ IVI + LP+ L
Sbjct: 526 LLLIVIILLLPMLAALAL 543
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type
IIA SERCA calcium pump. A separate analysis divides Type
IIA into sub-types (SERCA and PMR1) which are modelled
by TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 383 bits (985), Expect = e-117
Identities = 231/810 (28%), Positives = 373/810 (46%), Gaps = 83/810 (10%)
Query: 40 LCARYQTSAEKGL--TSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGA 97
+ + +T +G+ +S+ ++ G N L I+ L + +LL A
Sbjct: 48 IATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAA 107
Query: 98 VLCFIAYLIEFHISEDASKDNLWLGI-VLVTVCIITGIFS---YSQEAKSARIMDSFKNM 153
V+ + L E + ++ G+ +LV+V ++ + + Y +E + ++
Sbjct: 108 VVSLVLGLPEPGEGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSA- 166
Query: 154 VPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEP 213
Q VIR GQ++ I ++V GD+V + GD +PAD I ++D SS+TGE++P
Sbjct: 167 --QKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDP 224
Query: 214 QARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTP- 272
+ T EG+ + +V G N+ G++ + D+
Sbjct: 225 IKKG--------PVQDPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLM-MELRQAGEDSTP 275
Query: 273 -------IAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAV-------IFLIG--I 316
+A I F + + + G F+I I
Sbjct: 276 LQEKLSELAGLIGKFGMGSAVLLFLVLSLRYVFRIIRGDGRDTEEDAQTFLDHFIIAVTI 335
Query: 317 IVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMT 376
+V VPEGL VT+ L+ + K+M N +V+HL A ET+GS + ICSDKTGTLTQN M+
Sbjct: 336 VVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMS 395
Query: 377 VTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSY-KDLTLAGSLCNRAEFTPNQEKIQILKR 435
V ++ F V RN+ + +++ + G N + ++ KR
Sbjct: 396 VVQGYIGEQRFNVRDVL---------RNVPKHVRNILVEGISLNSSSE-EVVDRGG--KR 443
Query: 436 EVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMK 495
+G +E A+L F L + D E R K PFNS K+ + +Y K
Sbjct: 444 AFIGSKTECALLDFGLLLLRDYQEVRAEEKVVKIYPFNSERKFMSVVVKHSGGKYREFRK 503
Query: 496 GAPERILDRCST-MKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPA 554
GA E +L C + + + ++ +++E L + R + P +FP
Sbjct: 504 GASEIVLKPCRKRLDSNGEATPISDDDKDRCADVIEPLASDALRTICLAYRDFAPEEFPR 563
Query: 555 GFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAI 614
D PN GL +G++ + DP RP V +AV +C+ AGI V MVTGD+ TAKAI
Sbjct: 564 K-----DYPN---KGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAI 615
Query: 615 AKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHRE 674
A+ GI++ G +E G R + E+++ +L R
Sbjct: 616 ARNCGILTFGGLAME------------------------GKEFRSLVYEEMDPILPKLR- 650
Query: 675 IVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTAD 734
V AR+SP K +V + +G +VAVTGDG ND+PALK AD+G +MGI+G++V+K+ +D
Sbjct: 651 -VLARSSPLDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISGTEVAKEASD 709
Query: 735 MILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAI 794
+ILLDDNFASIV V+ GR ++DN++K + + L NV + + I PL V +
Sbjct: 710 IILLDDNFASIVRAVKWGRNVYDNIRKFLQFQLTVNVVAVILTFVGSCISSTSPLTAVQL 769
Query: 795 LCIDLGTDMWPAISLAYEKAESDIMRRHPR 824
L ++L D A++LA E ++ R P
Sbjct: 770 LWVNLIMDTLAALALATEPPTEALLDRKPI 799
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 371 bits (954), Expect = e-112
Identities = 293/1078 (27%), Positives = 463/1078 (42%), Gaps = 192/1078 (17%)
Query: 46 TSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYL 105
TS +GLT +A+ L G N L A +LL + ++L A + F
Sbjct: 21 TSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISF---- 76
Query: 106 IEFHISEDASKDNLWL-GIVLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDG 164
A D W+ G V+ + + + + QE K+ + MDS KN+ A+VIR+G
Sbjct: 77 --------AMHD--WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNG 126
Query: 165 QKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNAS----- 219
+ I S +LV GD+ +K GD IPAD+R+IE+ F D + LTGE+ P ++A
Sbjct: 127 KSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGK 186
Query: 220 ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIA-------GLTSGLESGDTP 272
E T + + NLAF S+ +G AKGI I N+ +G IA GL E D
Sbjct: 187 EEDTPIGDRINLAFSSSAVTKGRAKGICIATALNSEIGAIAAGLQGDGGLFQRPEKDDPN 246
Query: 273 IAKEIHHFMHLISAWAI--FLG-------------VTFFFLSFALGYAWI---------- 307
++++ ++ ++ FLG + A+ +A I
Sbjct: 247 KRRKLNKWILKVTKKVTGAFLGLNVGTPLHRKLSKLAVILFCIAIIFAIIVMAAHKFDVD 306
Query: 308 -DAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDK 366
+ I+ I + ++ +PE L+A +++ +++ A M+ +N +V+ L+A+E LG+ + ICSDK
Sbjct: 307 KEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKRNVIVRKLDALEALGAVNDICSDK 366
Query: 367 T------------------GTLT------QNRMTVTHLSFDKEVFEVDYFKDPTGLIEKV 402
T GT++ ++S +Y + + +
Sbjct: 367 TGTITQGKMIARQIWIPRFGTISIDNSDDAFNPNEGNVSGIPRFSPYEYSHNEAADQDIL 426
Query: 403 RN---------------MSSYKDLTLAGSLCN-------------RAEFTPNQEKIQILK 434
+ M + L +L N +A P + I +
Sbjct: 427 KEFKDELKEIDLPEDIDMDLFIKLLETAALANIATVFKDDATDCWKAHGDPTEIAIHVFA 486
Query: 435 REV----MGDASEAAILKFSELAIGDVVEFRNRHKKAL-----EIPFNSTDKYQVSIHIM 485
++ E +LK +E + + + A E PF+S K SI+
Sbjct: 487 KKFDLPHNALTGEEDLLKSNENDQSSLSQHNEKPGSAQFEFIAEFPFDSEIKRMASIYED 546
Query: 486 PNNE-YLLVMKGAPERILDRCSTM--KQGDKDVELDAKNRHEVEEILEQLGNYGERVLGF 542
+ E Y + KGA ERI++ CS+ K G K L+ +R + +E L G RVL F
Sbjct: 547 NHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDRELIIANMESLAAEGLRVLAF 606
Query: 543 CDYALPPAK-FPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVI 601
+ A + ++ + L FLGL+ + DPPR AV KC AGI V
Sbjct: 607 ASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVH 666
Query: 602 MVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMT 661
M+TGD P TAKAIA+ VGII + D + +V+ GS ++
Sbjct: 667 MLTGDFPETAKAIAQEVGIIPPNF-------------IHDRDEIMDS-MVMTGSQFDALS 712
Query: 662 TEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAM 721
E+++++ +V AR +P K+ ++E R A A+TGDGVNDSP+LK A++GIAM
Sbjct: 713 DEEVDDL--KALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAM 770
Query: 722 GITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFI 781
GI GSDV+K +D++L DDNFASI+ +EEGR +FDN+ K + + LA NV E + +
Sbjct: 771 GINGSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNIMKFVLHLLAENVAEA----ILL 826
Query: 782 VIGIP---------LPLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLV 832
+IG+ PL V IL + T +PA+ L EKA D+M R P + + +
Sbjct: 827 IIGLAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKAAPDLMDRLPHD--NEVGI 884
Query: 833 TGKLLFVAYGQIGVIEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQE 892
K L + G + S+ I+ + +
Sbjct: 885 FQKELIIDMFAYGFFLGGSCLASFTGILY-------------------GFGSGNLGHDCD 925
Query: 893 WTYASRKILEYTCHTAFFIAIVVVQWADLLIC---KTRYNSL----------------VH 933
Y + + +A F + + L++ K NS H
Sbjct: 926 AHYHAGCNDVFKARSAAF---ATMTFCALILAVEVKDFDNSFFNLHGIPDGDSNFKEFFH 982
Query: 934 QGMNNWVLNFGIVFETVAACIVSYCPGM-DEILKTYPVRAEWWLPAVPFAIVIFIYDE 990
+ N L + I F V+A Y P + D++ K P+ AEW L A I F E
Sbjct: 983 SIVENKFLAWAIAFAAVSAFPTIYIPVINDDVFKHKPIGAEWGLAAA-ATIAFFFGAE 1039
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 311 bits (798), Expect = 1e-92
Identities = 215/807 (26%), Positives = 353/807 (43%), Gaps = 142/807 (17%)
Query: 51 GLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHI 110
GLTSA+AK+ L + GPN L P KK + L + S ++ A++
Sbjct: 1 GLTSAEAKKRLAKYGPNEL-PEKKVSPLLKFLGFFWNPLSWVMEAAAIIAIA-----LEN 54
Query: 111 SEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKN-MVPQYANVIRDGQKKTI 169
D ++++ + ++ + +E K+ +++ K + P+ A V+RDG+ + I
Sbjct: 55 WVD--------FVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPK-ARVLRDGKWQEI 105
Query: 170 LSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAK 229
+SELV GDVV +K GD +PAD R+ E +VD ++LTGE+ P + +
Sbjct: 106 PASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTGDI-------- 157
Query: 230 NLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFM-HLISAWA 288
A+ + +G A+ +V G NT G+ A L E+G + K + LI
Sbjct: 158 --AYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETGSGHLQKILSKIGLFLIVLIG 215
Query: 289 IFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVK 348
+ + + L F G ++ + + F + ++V +P + A ++V +++ A +A K +V
Sbjct: 216 VLVLIELVVLFFGRGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVT 275
Query: 349 HLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSY 408
L A+E L +CSDKTGTLT N++++ + F+ D
Sbjct: 276 RLTAIEELAGMDILCSDKTGTLTLNKLSIDEILPFFNGFDKD------------------ 317
Query: 409 KDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKAL 468
D+ L +L +R +Q DA + A+L + D+ E R+ +K
Sbjct: 318 -DVLLYAALASR---EEDQ------------DAIDTAVLG----SAKDLKEARDGYKVLE 357
Query: 469 EIPFNSTDKYQVSIHIMP-NNEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEE 527
+PF+ DK + P + V KGAP+ ILD C D E+ +VEE
Sbjct: 358 FVPFDPVDKRTEATVEDPETGKRFKVTKGAPQVILDLC------DNKKEI----EEKVEE 407
Query: 528 ILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVP 587
+++L + G R LG ++D FLGL+ + DPPR
Sbjct: 408 KVDELASRGYRALGVA---------------RTDEEG----RWHFLGLLPLFDPPRHDTK 448
Query: 588 DAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRES 647
+ + + R G+ V MVTGDH AK A+ +G L
Sbjct: 449 ETIERARHLGVEVKMVTGDHLAIAKETARRLG----------------------LGTNIY 486
Query: 648 TTIVIQGSILRDMTTEQLENVLRTHREIV-----FARTSPTQKLHIVEGCQRLGAIVAVT 702
T V+ RD L E+V FA P K IVE Q+ G +V +T
Sbjct: 487 TADVLLKGDNRDDLPSGLG-------EMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMT 539
Query: 703 GDGVNDSPALKKADIGIAM-GITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKK 761
GDGVND+PALKKAD+GIA+ G T D ++ AD++L + + IV + E R IF +K
Sbjct: 540 GDGVNDAPALKKADVGIAVAGAT--DAARSAADIVLTEPGLSVIVDAILESRKIFQRMKS 597
Query: 762 SIAYTLASNVP-EITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYEKAESDIMR 820
+ Y +A + L+ +++ P + ++ I + D +++AY+ +
Sbjct: 598 YVIYRIAETIRIVFFFGLLILILNFYFP--PIMVVIIAILNDG-TIMTIAYDNVKP---- 650
Query: 821 RHPRNPVTDKLVTGKLLFVAYGQIGVI 847
+ P L + G VI
Sbjct: 651 --SKLPQRWNLREVFTMSTVLGIYLVI 675
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 289 bits (741), Expect = 1e-83
Identities = 200/771 (25%), Positives = 348/771 (45%), Gaps = 107/771 (13%)
Query: 11 KPEHHKSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLT 70
H K +NL KE ++ L R E GLT+ + + L GPN
Sbjct: 1 NKLHVKKQG--NNLLKESQMGKETL------LRKLGVHETGLTNVEVTERLAEFGPNQTV 52
Query: 71 PAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCI 130
KK P +L++ F +L A+L ++YL D+L +++ + +
Sbjct: 53 EEKKVPNLRLLIRAFNNPFIYIL---AMLMGVSYL----------TDDLEATVIIALMVL 99
Query: 131 ITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQKKT------ILSSELVRGDVVDVKF 184
+G+ + QE+++ R + KNMV A V+R + + LV GD++++
Sbjct: 100 ASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAA 159
Query: 185 GDRIPADIRIIESHGFKVDNSSLTGE---AEPQARNASESTTIVLEAKNLAFFSTNAVEG 241
GD IPAD R+I + ++ S+LTGE E + +LE +NL F TN + G
Sbjct: 160 GDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSG 219
Query: 242 TAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHF-MHLISAWAIFLGVTFFFLSF 300
A+ +V+ G +T G +A + G T K + LI + + V
Sbjct: 220 HAQAVVLATGSSTWFGSLAIAATE-RRGQTAFDKGVKSVSKLLIRFMLVMVPVVLMINGL 278
Query: 301 ALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTS 360
G W++A +F + + V PE L V+ L+ A M+ K +VK L A++ G+
Sbjct: 279 MKG-DWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMD 337
Query: 361 TICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNR 420
+C+DKTGTLTQ+++ + +D + + + K+ ++SY
Sbjct: 338 ILCTDKTGTLTQDKIELEK--------HIDSSGETSERVLKMAWLNSY------------ 377
Query: 421 AEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQV 480
Q + V+ + A+L + + + +R KK EIPF+ D+ ++
Sbjct: 378 ---------FQTGWKNVL----DHAVLAKLDESAAR--QTASRWKKVDEIPFD-FDRRRL 421
Query: 481 SIHIMPN-NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERV 539
S+ + L+ KGA E +L C+ + G V L + E++++ ++ G RV
Sbjct: 422 SVVVENRAEVTRLICKGAVEEMLTVCTHKRFGGAVVTLSESEKSELQDMTAEMNRQGIRV 481
Query: 540 LGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIR 599
+ A+ G ++D L G + +DPP+ + +A+A GI
Sbjct: 482 I-----AVATKTLKVG---EADFTKTDEEQLIIEGFLGFLDPPKESTKEAIAALFKNGIN 533
Query: 600 VIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRD 659
V ++TGD+ + I + VGI + + G+ + +
Sbjct: 534 VKVLTGDNEIVTARICQEVGIDAND--------------------------FLLGADIEE 567
Query: 660 MTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGI 719
++ E+L LR + +FAR +P QK I+ ++ G V GDG+ND+PAL+KAD+GI
Sbjct: 568 LSDEELARELR--KYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGI 625
Query: 720 AMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASN 770
++ T +D++K+ +D+ILL+ + + GV EGR F N+ K + T +SN
Sbjct: 626 SVD-TAADIAKEASDIILLEKSLMVLEEGVIEGRNTFGNILKYLKMTASSN 675
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 284 bits (728), Expect = 1e-81
Identities = 203/746 (27%), Positives = 326/746 (43%), Gaps = 105/746 (14%)
Query: 39 DLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGAV 98
+L + T E GL A+ + + G N L K P WV L F++LL +
Sbjct: 56 ELWKTFDTHPE-GLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILL---TI 111
Query: 99 LCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYA 158
L I+Y E +L+ V+ + I+ + ++ QEA+S + D+ K MV A
Sbjct: 112 LGAISYATE----------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTA 161
Query: 159 NVIRDGQKK------TILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEA- 211
V+R K I +LV GD++ + GD IPAD+RI+++ V +SLTGE+
Sbjct: 162 TVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESL 221
Query: 212 --EPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESG 269
E A + LE L F TN V GTA+ +VI G NT G++AG S +S
Sbjct: 222 PVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWFGQLAGRVSEQDSE 281
Query: 270 DTPIAKEIHHF-MHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGLLAT 328
+ I LI + V + G W +A +F + + V PE L
Sbjct: 282 PNAFQQGISRVSWLLIRFMLVMAPVVLLINGYTKG-DWWEAALFALSVAVGLTPEMLPMI 340
Query: 329 VTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFE 388
VT L+ A +++ + +VK L+A++ G+ +C+DKTGTLTQ DK V E
Sbjct: 341 VTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQ----------DKIVLE 390
Query: 389 --VDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRA--EFTPNQEKIQILKREVMGDASEA 444
D + + ++S+ L +L + A E + +
Sbjct: 391 NHTDISGKTSERVLHSAWLNSHYQTGLK-NLLDTAVLEGVDEESARSLAS---------- 439
Query: 445 AILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDR 504
R +K EIPF+ + + + L+ KGA E IL+
Sbjct: 440 ------------------RWQKIDEIPFDFERRRMSVVVAENTEHHQLICKGALEEILNV 481
Query: 505 CSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPN 564
CS ++ + V LD ++ + + L G RV+ LP + +SD
Sbjct: 482 CSQVRHNGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQRADESD--- 538
Query: 565 FPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEG 624
L G ++ +DPP+ A+ +++G+ V ++TGD + A + VG+ +
Sbjct: 539 -----LILEGYIAFLDPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDAGE 593
Query: 625 SETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQ 684
V+ GS + ++ ++L N+ +FAR +P
Sbjct: 594 --------------------------VLIGSDIETLSDDELANLAERTT--LFARLTPMH 625
Query: 685 KLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFAS 744
K IV +R G +V GDG+ND+PAL+ ADIGI++ D++++ AD+ILL+ +
Sbjct: 626 KERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GAVDIAREAADIILLEKSLMV 684
Query: 745 IVTGVEEGRLIFDNLKKSIAYTLASN 770
+ GV EGR F N+ K I T +SN
Sbjct: 685 LEEGVIEGRRTFANMLKYIKMTASSN 710
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 267 bits (685), Expect = 8e-76
Identities = 209/768 (27%), Positives = 348/768 (45%), Gaps = 121/768 (15%)
Query: 36 PLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGF-SVLLW 94
L++ A T +GLT A + L R GPN + K A V LL+ F VL+
Sbjct: 31 SLEETLANLNTH-RQGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMV 89
Query: 95 TGAVLCFIAYLIEFHISEDASKDNLWLG-IVLVTVCIITGIFSYSQEAKSARIMDSFKNM 153
A+ F Y + E+ G I+++T+ +++G+ + QE +S + ++ K M
Sbjct: 90 LAAISFFTDYWLPLRRGEETD----LTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAM 145
Query: 154 VPQYANVIR------DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSL 207
V A V+R + ++ I ELV GD+V + GD IPAD+R+IES + + L
Sbjct: 146 VRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVL 205
Query: 208 TGEAEP-------------QARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNT 254
TGEA P A ++ +L+ N+ F TN V GTA +V+ G T
Sbjct: 206 TGEALPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRT 265
Query: 255 VMGRIAGLTSG------LESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWID 308
G +A G + G ++ + FM + + V F G W++
Sbjct: 266 YFGSLAKSIVGTRAQTAFDRGVNSVSWLLIRFM------LVMVPVVLLINGFTKG-DWLE 318
Query: 309 AVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTG 368
A++F + + V PE L V+ L+ A MA + VVK L A++ G+ +C+DKTG
Sbjct: 319 ALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTG 378
Query: 369 TLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQE 428
TLTQ+R+ + H +D V + L LA N +Q
Sbjct: 379 TLTQDRIILEH--------HLD-----------VSGRKDERVLQLA--WLNSF----HQS 413
Query: 429 KIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIM-PN 487
+ + +M + A++ F+E ++V+ ++K E+PF+ + ++S+ +
Sbjct: 414 GM----KNLM----DQAVVAFAE-GNPEIVKPA-GYRKVDELPFDFVRR-RLSVVVEDAQ 462
Query: 488 NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYAL 547
++LL+ KGA E +L + ++ GD LD R + + E G RVL
Sbjct: 463 GQHLLICKGAVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVL------- 515
Query: 548 PPAKFPAGFELKSDPPNFPLT-----GLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIM 602
A E+ + L G ++ +DPP+ + A+A R G+ V +
Sbjct: 516 ----LVATREIPGGESRAQYSTADERDLVIRGFLTFLDPPKESAAPAIAALRENGVAVKV 571
Query: 603 VTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTT 662
+TGD+P+ I + VG L+P E + G+ + M
Sbjct: 572 LTGDNPIVTAKICREVG----------------------LEPGE----PLLGTEIEAMDD 605
Query: 663 EQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMG 722
L + VFA+ +P QK +++ Q G V GDG+ND+PAL+ AD+GI++
Sbjct: 606 AALAREVE--ERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD 663
Query: 723 ITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASN 770
+G+D++K++AD+ILL+ + + GV +GR F N+ K + T +SN
Sbjct: 664 -SGADIAKESADIILLEKSLMVLEEGVIKGRETFGNIIKYLNMTASSN 710
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 188 bits (481), Expect = 1e-54
Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 12/233 (5%)
Query: 124 VLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYAN-VIRDGQKKTILSSELVRGDVVDV 182
+++ + +I + QE ++ + + + K ++P A VIRDG+++ I + ELV GD+V +
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLPPTAATVIRDGKEEEIPADELVVGDIVLL 60
Query: 183 KFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGT 242
K GDR+PAD RIIE +VD S+LTGE+ P ++ + F T + G
Sbjct: 61 KPGDRVPADGRIIE-GSLEVDESALTGESLPVEKSR----------GDTVFAGTVVLSGE 109
Query: 243 AKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFAL 302
K IV G++T +G+IA L +S TP+ + + ++ + L + F + F
Sbjct: 110 LKVIVTATGEDTELGKIARLVEEAKSAKTPLQRLLDKLAKILVPIVLALAILVFLIWFFR 169
Query: 303 GYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVET 355
G +++A++ + ++VA PE L V + L++ A R+A K +VK+L A+ET
Sbjct: 170 GGDFLEALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 167 bits (424), Expect = 4e-42
Identities = 170/760 (22%), Positives = 284/760 (37%), Gaps = 145/760 (19%)
Query: 41 CARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLK-------HLFEGFSVLL 93
CA + G AQ K G N + P+++ LLK ++F+ FSV+L
Sbjct: 133 CAGHSNGLTTG-DIAQRKAKY---GKNEI--EIPVPSFLELLKEEVLHPFYVFQVFSVIL 186
Query: 94 WTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKNM 153
W D + + + T I + + + M ++M
Sbjct: 187 W--------------------LLDEYYYYSLCIVFMSSTSISLSVYQIR--KQMQRLRDM 224
Query: 154 V--PQYANVIRDGQKKTILSSELVRGDVVDVKF--GDRIPADIRIIESHGFKVDNSSLTG 209
V PQ VIR+G+ TI S ELV GD+V + +P D ++ V+ S LTG
Sbjct: 225 VHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSCI-VNESMLTG 283
Query: 210 EAEPQARNASESTTIVLEA--------KNLAFFSTNAV-------EGTAKGIVILCGDNT 254
E+ P + E K++ F T + + IV+ G +T
Sbjct: 284 ESVPVLKFPIPDNGDDDEDLFLYETSKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFST 343
Query: 255 VMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFF-LSFALGYAWIDAVIFL 313
G++ + S L F I A+ + F + + + I L
Sbjct: 344 SKGQL--VRSILYPKPRVFKFYKDSFK-FILFLAVLALIGFIYTIIELIKDGRPLGKIIL 400
Query: 314 --IGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT 371
+ II VP L A +++ ++ + R+ K + G C DKTGTLT
Sbjct: 401 RSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLT 460
Query: 372 QNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQ 431
++ + ++ V ++ V SS K +L T K++
Sbjct: 461 EDGL---------DLRGVQGLSGNQEFLKIVTEDSSLKPSITHKALATCHSLT----KLE 507
Query: 432 ILKREVMGDASEAAILKFSELAI--GDVVEFRNRHKKALEIPFNSTDKYQV--------- 480
+++GD + + + + + D A+ + + +
Sbjct: 508 ---GKLVGDPLDKKMFEATGWTLEEDDESAEPTS-ILAVVRTDDPPQELSIIRRFQFSSA 563
Query: 481 ----SIHIMPNNEYLLV--MKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGN 534
S+ + N+E +KGAPE I CS + V D +E+L+
Sbjct: 564 LQRMSVIVSTNDERSPDAFVKGAPETIQSLCSP-----ETVPSD------YQEVLKSYTR 612
Query: 535 YGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCR 594
G RVL LP +L D LT FLG + +P +P + + + +
Sbjct: 613 EGYRVLALAYKELPKLTLQKAQDLSRDAVESNLT---FLGFIVFENPLKPDTKEVIKELK 669
Query: 595 SAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETL----------EDIAKRRRVPVSSL-- 642
A IR +M+TGD+P+TA +A+ GI+ S TL + + + S+
Sbjct: 670 RASIRTVMITGDNPLTAVHVARECGIV-NPSNTLILAEAEPPESGKPNQIKFEVIDSIPF 728
Query: 643 ------------------DPRESTTIVIQG---SILRDMTTEQLENVLRTHREIVFARTS 681
+ + G ++L+ + E L +L VFAR +
Sbjct: 729 ASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTT--VFARMA 786
Query: 682 PTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAM 721
P QK +VE Q+L V + GDG ND ALK+AD+GI++
Sbjct: 787 PDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISL 826
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 130 bits (329), Expect = 8e-35
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 37/211 (17%)
Query: 786 PLPLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIG 845
PLPL + IL I+L TD PA++L +E E D+M+R PR P + L + KLL Q G
Sbjct: 1 PLPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKP-KEPLFSRKLLRRILLQ-G 58
Query: 846 VIEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTC 905
++ A +F+ + G
Sbjct: 59 LLIAIVTLLVFFLGLLGFGI----------------------------------SESGLA 84
Query: 906 HTAFFIAIVVVQWADLLICKTRYNSLVHQGMN-NWVLNFGIVFETVAACIVSYCPGMDEI 964
T F +V+ Q + L ++ SL G+ N +L ++ + ++ Y PG+ +
Sbjct: 85 QTMAFNTLVLSQLFNALNARSLRRSLFKIGLFSNKLLLLAVLLSLLLQLLIIYVPGLQAV 144
Query: 965 LKTYPVRAEWWLPAVPFAIVIFIYDECRRFW 995
T P+ E WL + A+V+ + E R+
Sbjct: 145 FGTTPLSLEQWLIVLGLALVVLLVVELRKLL 175
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 122 bits (309), Expect = 4e-33
Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 4/94 (4%)
Query: 416 SLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNST 475
+LCN A+F N+EK E++GD +E+A+L F+E DV E R R+ + EIPFNS
Sbjct: 1 ALCNDAKFGENEEKNG---GEIIGDPTESALLVFAEKLGIDVEELRARYPRVAEIPFNSE 57
Query: 476 DKYQVSIH-IMPNNEYLLVMKGAPERILDRCSTM 508
K ++H + ++ Y L +KGAPERIL+RCST+
Sbjct: 58 RKRMSTVHKLEDDDGYRLFVKGAPERILERCSTI 91
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 135 bits (341), Expect = 2e-32
Identities = 59/225 (26%), Positives = 102/225 (45%), Gaps = 61/225 (27%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
+ +G++++ D RP +A+A ++ GI+V+M+TGD+ TA+AIAK +G I E
Sbjct: 527 KLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELG-IDE------- 578
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
V A P K IV
Sbjct: 579 ---------------------------------------------VRAELLPEDKAEIVR 593
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q G VA+ GDG+ND+PAL AD+GIAMG +G+DV+ + AD++L+ D+ +++ ++
Sbjct: 594 ELQAEGRKVAMVGDGINDAPALAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAID 652
Query: 751 EGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIG--IPLPLGVVA 793
R +K+++ + N + + G + + +A
Sbjct: 653 LSRATRRIIKQNLFWAFGYNA-----IAIPLAAGGLLTPWIAALA 692
Score = 98.4 bits (246), Expect = 6e-21
Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 63/347 (18%)
Query: 77 AWVILLKHLFEGFSVLLWTGAVLCFIAYLI---EFHISEDASKDNLWLGI-VLVTVCIIT 132
++L L G +L W +L F+ + L + LV + I
Sbjct: 100 PLLLLSLGLLLGAFLLPWVSFLLATPVLFYGGWPFYRGAWRALRRGRLNMDTLVALATI- 158
Query: 133 GIFSYSQEA-----------------------------KSARIMDSFKNMVPQYANVIR- 162
G ++YS A ++ R + + ++ P+ A V+R
Sbjct: 159 GAYAYSLYATLFPVYFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRG 218
Query: 163 DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASE-- 220
DG+++ + E+ GD+V V+ G+RIP D ++ VD S LTGE+ P + +
Sbjct: 219 DGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSS-VDESMLTGESLPVEKKPGDEV 277
Query: 221 -STTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHH 279
+ T+ L+ + + T G +T + RI L +S PI +
Sbjct: 278 FAGTVNLDG---SLT----IRVTRVG------ADTTLARIIRLVEEAQSSKAPIQRLADR 324
Query: 280 FMHLISAW----AIFL-GVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGL-LATVTVCL 333
+++ + + +TF G W A+ + ++V P L LAT T L
Sbjct: 325 V----ASYFVPVVLVIAALTFALWPLFGGGDWETALYRALAVLVIACPCALGLATPTAIL 380
Query: 334 SLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHL 380
R A + ++K EA+E L T+ DKTGTLT+ + VT +
Sbjct: 381 VGIG-RAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPEVTDV 426
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 127 bits (321), Expect = 2e-30
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 60/232 (25%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAK-CRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLE 629
LG++++ D RP +A+A R+ GI+++M+TGD+ A+A+A +GI
Sbjct: 374 ELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI--------- 424
Query: 630 DIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIV 689
+ V A P KL IV
Sbjct: 425 --------------------------------------------DEVHAELLPEDKLAIV 440
Query: 690 EGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGV 749
+ Q G +VA+ GDG+ND+PAL AD+GIAMG GSDV+ + AD++LL+D+ +S+ T +
Sbjct: 441 KELQEEGGVVAMVGDGINDAPALAAADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAI 499
Query: 750 EEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGT 801
+ R +K+++A+ L N+ + + G LPL ++A+L + T
Sbjct: 500 DLSRKTRRIIKQNLAWALGYNL-----VAIPLAAGGLLPLWLLAVLLHEGST 546
Score = 109 bits (274), Expect = 1e-24
Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 22/243 (9%)
Query: 142 KSARIMDSFKNMVPQYANVIR-DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGF 200
+++ + + + P A V++ DG ++ + EL GD+V V+ G+RIP D +I
Sbjct: 41 RASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESE 100
Query: 201 KVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIA 260
VD S+LTGE+ P + E + N +G+ V G+++ + +I
Sbjct: 101 -VDESALTGESMPVEK--KEGDEVFAGTING--------DGSLTIRVTKLGEDSTLAQIV 149
Query: 261 GLTSGLESGDTPIAKEIHHFMHLISAW----AIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
L +S PI + I+++ + + + F + ALG A+ + +
Sbjct: 150 ELVEEAQSSKAPIQR----LADRIASYYVPAVLAIALLTFVVWLALGALG--ALYRALAV 203
Query: 317 IVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMT 376
+V P L V + + A + ++K +A+E L T+ DKTGTLT + T
Sbjct: 204 LVVACPCALGLATPVAILVAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPT 263
Query: 377 VTH 379
V
Sbjct: 264 VVD 266
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 118 bits (298), Expect = 9e-28
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 57/224 (25%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGI-RVIMVTGDHPVTAKAIAKAVGIISEGSETLE 629
+LG + + D PRP +A+A+ ++ GI +V+M+TGD A+ +A+ +GI
Sbjct: 352 TYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI--------- 402
Query: 630 DIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIV 689
+ V A P KL IV
Sbjct: 403 --------------------------------------------DEVHAELLPEDKLEIV 418
Query: 690 EGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGV 749
+ + VA+ GDG+ND+PAL AD+GIAMG +GSDV+ +TAD++LL+D+ + + +
Sbjct: 419 KELREKYGPVAMVGDGINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAI 478
Query: 750 EEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVA 793
R +K+++ L + I L + +PL L V+
Sbjct: 479 RLARRTRRIVKQNVVIALGIILLLILLALFGV---LPLWLAVLG 519
Score = 100 bits (250), Expect = 1e-21
Identities = 61/264 (23%), Positives = 106/264 (40%), Gaps = 19/264 (7%)
Query: 121 LGIVLVTVCIITGIFSYSQ------EAKSARIMDSFKNMVPQYANVIRDGQKKTILSSEL 174
+G L ++ +FS + ++ R + + + P A V+R G + + EL
Sbjct: 15 IGEYLEGALLLL-LFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEEL 73
Query: 175 VRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFF 234
GDVV VK G+R+P D ++ VD S+LTGE+ P + + + A NL
Sbjct: 74 KVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPGD--EVFAGAINL--- 127
Query: 235 STNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVT 294
+G +V ++ + +I L +S + I F + + + +
Sbjct: 128 -----DGVLTIVVTKLPADSTIAKIVNLVEEAQSRKAKTQRFIDRFARYYTPVVLAIALA 182
Query: 295 FFFLSFALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVE 354
+ + L W V + ++V P L+ + A ++K A+E
Sbjct: 183 IWLVPGLLK-RWPFWVYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALE 241
Query: 355 TLGSTSTICSDKTGTLTQNRMTVT 378
L T+ DKTGTLT R V
Sbjct: 242 ALAKIKTVAFDKTGTLTTGRPKVV 265
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 115 bits (289), Expect = 2e-26
Identities = 61/230 (26%), Positives = 98/230 (42%), Gaps = 70/230 (30%)
Query: 564 NFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISE 623
N L G+ L D +P + + + GI +M+TGD+ TAKA+AK +GI
Sbjct: 402 NGELAGVLALA-----DQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI--- 453
Query: 624 GSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPT 683
ENV A P
Sbjct: 454 ------------------------------------------ENV--------RAEVLPD 463
Query: 684 QKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFA 743
K +++ Q G +VA+ GDG+ND+PAL +AD+GIA+G G+DV+ + AD++LL ++
Sbjct: 464 DKAALIKKLQEKGKVVAMVGDGINDAPALAQADVGIAIG-AGTDVAIEAADVVLLRNDLN 522
Query: 744 SIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVA 793
+ T ++ R +K+++ + N VI IP+ GV+
Sbjct: 523 DVATAIDLSRKTLRRIKQNLLWAFGYN-----------VIAIPIAAGVLY 561
Score = 98.1 bits (245), Expect = 5e-21
Identities = 63/232 (27%), Positives = 105/232 (45%), Gaps = 24/232 (10%)
Query: 155 PQYANVIR-DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEP 213
P A ++ DG+ + + L GD+V V G++IP D +IE VD S +TGE+ P
Sbjct: 90 PSTATLLTDDGEIEEVPVELLQPGDIVRVLPGEKIPVDGTVIEGESE-VDESLVTGESLP 148
Query: 214 QARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPI 273
+ ++ N T ++ A G++T + +I L + PI
Sbjct: 149 VPKK--VGDPVIAGTVNG----TGSLVVRATAT----GEDTTLAQIVRLVRQAQQSKAPI 198
Query: 274 AKEIHHFMHLISAW----AIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGL-LAT 328
+ ++ + I + + F + LG ++ A+ + +++ P L LAT
Sbjct: 199 QR----LADKVAGYFVPVVIAIALITFVIWLILGADFVFALEVAVTVLIIACPCALGLAT 254
Query: 329 VTVCLSLTAKRMASKNCV-VKHLEAVETLGSTSTICSDKTGTLTQNRMTVTH 379
TV T A+KN V +K +A+E + T+ DKTGTLTQ + TVT
Sbjct: 255 PTVIAVATGL--AAKNGVLIKDGDALERAANIDTVVFDKTGTLTQGKPTVTD 304
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 106 bits (267), Expect = 3e-23
Identities = 127/578 (21%), Positives = 198/578 (34%), Gaps = 131/578 (22%)
Query: 246 IVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYA 305
I+IL V+ I+ + +G I + H W I L V+ A
Sbjct: 251 IIILFCLLFVLCLISSVGAG-----------IWNDAHGKDLWYIRLDVS------ERNAA 293
Query: 306 WIDAVIFLIGIIVAN--VPEGLLATVTVCLSLTAKRMASKN----------CVVKHLEAV 353
FL +I+ + +P L ++ + S+ A + S V+
Sbjct: 294 ANGFFSFLTFLILFSSLIPISLYVSLELVKSVQAYFINSDLQMYHEKTDTPASVRTSNLN 353
Query: 354 ETLGSTSTICSDKTGTLTQNRMT-----------------------------VTHLSFDK 384
E LG I SDKTGTLTQN M V + +
Sbjct: 354 EELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDGIRERLGSYVENENSML 413
Query: 385 EVFEVDYFKDPT---GLIEKVRNMSSYKDLTLAGSLCNRA--EFTPNQEKIQILKREVMG 439
+ F DP L N + LA +LC+ EF + + +
Sbjct: 414 VESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVVPEFNDDGPEEITYQAA--- 470
Query: 440 DASEAAILKFSELAIGDVVEFRNRHK-----------KALEI----PFNSTDKYQVSIHI 484
EAA++K + +G V R K EI FNS K I
Sbjct: 471 SPDEAALVKAAR-DVGFVFFERTPKSISLLIEMHGETKEYEILNVLEFNSDRKRMSVIVR 529
Query: 485 MPNNEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCD 544
P+ L+ KGA I R S + E +E LE + G R L
Sbjct: 530 NPDGRIKLLCKGADTVIFKRLS---------SGGNQVNEETKEHLENYASEGLRTLCIAY 580
Query: 545 YALPPAKFPAGFELKSDPPNFPLT---------------GLRFLGLMSMIDPPRPAVPDA 589
L ++ + + + + LT L LG ++ D + VP+
Sbjct: 581 RELSEEEYEE-WNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVPET 639
Query: 590 VAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEG-------SETLEDIAKRRRVPVSSL 642
+ R AGI++ ++TGD TA I + ++S S++L+ L
Sbjct: 640 IELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSDSLDATRSVEAAIKFGL 699
Query: 643 DPRESTT----------IVIQGSILRDMTTEQLENVLRTH----REIVFARTSPTQKLHI 688
+ +VI G L E+LE + ++ R SP+QK +
Sbjct: 700 EGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADV 759
Query: 689 VEGCQ-RLGAIVAVTGDGVNDSPALKKADIGIAMGITG 725
V + G GDG ND +++AD+G+ GI+G
Sbjct: 760 VRLVKKSTGKTTLAIGDGANDVSMIQEADVGV--GISG 795
Score = 40.1 bits (94), Expect = 0.007
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 67 NSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHIS-----EDASKDNLWL 121
N ++ K T L K+LFE F A L ++ S
Sbjct: 4 NKISTTKYTVL-TFLPKNLFEQFK----------RFANLYFLVVALLQQVPILSPTYRGT 52
Query: 122 GIV-LVTVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQK-KTILSSELVRGDV 179
IV L V I+T I ++ + R N + V+ + I +L GD+
Sbjct: 53 SIVPLAFVLIVTAIKEAIEDIRRRRRDKEVNN---RLTEVLEGHGQFVEIPWKDLRVGDI 109
Query: 180 VDVKFGDRIPADIRII---ESHGF-KVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFS 235
V VK +RIPAD+ ++ E G V+ ++L GE + R A E T +L+ ++ FS
Sbjct: 110 VKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDDIKNFS 169
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
This entry represents the conserved N-terminal region
found in several classes of cation-transporting P-type
ATPases, including those that transport H+, Na+, Ca2+,
Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
P-ATPases, this domain is found in the catalytic alpha
chain. In gastric H+/K+-ATPases, this domain undergoes
reversible sequential phosphorylation inducing
conformational changes that may be important for
regulating the function of these ATPases.
Length = 75
Score = 91.1 bits (227), Expect = 3e-22
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 29 ELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEG 88
ELD H L L+++ R QT EKGL+S +A + L R GPN L P KKT + L+
Sbjct: 1 ELDWHALSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNP 60
Query: 89 FSVLLWTGAVLCFIA 103
+L AVL +
Sbjct: 61 LIYILLAAAVLSALL 75
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 96.6 bits (241), Expect = 2e-20
Identities = 116/477 (24%), Positives = 181/477 (37%), Gaps = 108/477 (22%)
Query: 157 YANVIR-DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQA 215
A ++R DG + + ++EL +GD+V V+ G+ IP+D +IE VD S++TGE+ P
Sbjct: 105 IARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVI 163
Query: 216 RNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDN---TVMGRIAGLTSGLESGDTP 272
R + + V T + + I N T + R+ L G E TP
Sbjct: 164 RESGGDFSSV----------TGGTRVLSDWLKIRITANPGETFLDRMIALVEGAERQKTP 213
Query: 273 IAKEIHHFMHLISAWAIFLGVTFFFLSFA--LGYAWIDAVIFLIGIIVANVPE---GLLA 327
EI + L IFL FA G V L+ ++V +P GLL+
Sbjct: 214 --NEIALTILLSGLTLIFLLAVATLYPFAIYSGGGAAS-VTVLVALLVCLIPTTIGGLLS 270
Query: 328 TVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT-QNRMTVTHLSFDKEV 386
+ + R+ N + AVE G T+ DKTGT+T NR E
Sbjct: 271 AIGIA---GMDRVTQFNVIATSGRAVEAAGDVDTLLLDKTGTITLGNRQAS-------EF 320
Query: 387 FEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASEAAI 446
V S ++L A L + A+ TP I L +++ + E +
Sbjct: 321 IPV--------------PGVSEEELADAAQLASLADETPEGRSIVELAKKLGIELREDDL 366
Query: 447 LKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDRCS 506
+E +PF + + S +P + KGA + I
Sbjct: 367 QSHAEF-----------------VPFTAQTRM--SGVDLPGGRE--IRKGAVDAIRRYVR 405
Query: 507 TMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFP 566
G +LDA V+E+ G P
Sbjct: 406 ER-GGHIPEDLDAA----VDEVSRLGGT-------------------------------P 429
Query: 567 LT---GLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
L R LG++ + D +P + + A+ R GI+ +M+TGD+P+TA AIA G+
Sbjct: 430 LVVVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV 486
Score = 64.2 bits (157), Expect = 2e-10
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
A +P KL ++ Q G +VA+TGDG ND+PAL +AD+G+AM +G+ +K+ A+M+
Sbjct: 491 AEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMN-SGTQAAKEAANMVD 549
Query: 738 LDDNFASIVTGVEEGR 753
LD N ++ VE G+
Sbjct: 550 LDSNPTKLIEVVEIGK 565
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 89.8 bits (223), Expect = 3e-18
Identities = 63/219 (28%), Positives = 93/219 (42%), Gaps = 69/219 (31%)
Query: 575 LMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKR 634
L+++ DP R A+ + AG R++M+TGD+P TA AIAK GI
Sbjct: 644 LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE------------ 691
Query: 635 RRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQR 694
VI G VL P K ++ Q
Sbjct: 692 ----------------VIAG-------------VL------------PDGKAEAIKRLQS 710
Query: 695 LGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRL 754
G VA+ GDG+ND+PAL +AD+GIAMG GSDV+ +TA + L+ + + + R
Sbjct: 711 QGRQVAMVGDGINDAPALAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADALAISRA 769
Query: 755 IFDNLKKSIAYTLASNVPEITPFLMFI--VIGIPLPLGV 791
N+K+++ FI +GIP+ G+
Sbjct: 770 TLRNMKQNL-------------LGAFIYNSLGIPIAAGI 795
Score = 55.1 bits (133), Expect = 2e-07
Identities = 63/247 (25%), Positives = 114/247 (46%), Gaps = 29/247 (11%)
Query: 142 KSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFK 201
+S++ ++ ++ P A V+ D +K++ +++ G ++ + GDR+P D I + +
Sbjct: 309 RSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGEAW- 367
Query: 202 VDNSSLTGEAEPQARNASEST---TIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGR 258
+D + LTGE PQ + +S T+V + L F +AV G +T + R
Sbjct: 368 LDEAMLTGEPIPQQKGEGDSVHAGTVVQDGSVL--FRASAV-----------GSHTTLSR 414
Query: 259 IAGLTSGLESGDTPI---AKEIHH-FMHLISAWAIFLGVTFFFLSFA--LGYAWIDAVIF 312
I + +S I A +I F+ ++ A+ ++F A + Y + A
Sbjct: 415 IIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALVSAAIWYFFGPAPQIVYTLVIATTV 474
Query: 313 LIGIIVANVPEGL-LATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT 371
L I+A P L LAT +S R A +V+ +A++ + T+ DKTGTLT
Sbjct: 475 L---IIA-CPCALGLATPMSIIS-GVGRAAEFGVLVRDADALQRASTLDTLVFDKTGTLT 529
Query: 372 QNRMTVT 378
+ + V
Sbjct: 530 EGKPQVV 536
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport.
Length = 69
Score = 76.4 bits (189), Expect = 4e-17
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H L ++++ AR T EKGLT A+A++ L + GPN L K W I L+ + ++
Sbjct: 2 HTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVII 61
Query: 93 LWTGAVLC 100
L A++
Sbjct: 62 LLIAAIVS 69
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 71.8 bits (176), Expect = 9e-13
Identities = 122/553 (22%), Positives = 205/553 (37%), Gaps = 128/553 (23%)
Query: 92 LLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEA----KSARIM 147
++W G++L I + ++ + IT +F+ EA +
Sbjct: 37 IVWVGSLLT-TCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQA 95
Query: 148 DSFKNMVPQ-YANVIR-DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNS 205
DS K +A ++R DG + + +L +GD+V V+ GD IP D +IE VD S
Sbjct: 96 DSLKGTKKTTFAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEG-VASVDES 154
Query: 206 SLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDN---TVMGRIAGL 262
++TGE+ P + + V T + +V+ C N T + R+ L
Sbjct: 155 AITGESAPVIKESGGDFASV----------TGGTRILSDWLVVECTANPGETFLDRMIAL 204
Query: 263 TSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVI---FLIGIIVA 319
G + TP EI + LI+ +FL VT FA A+ I L+ ++V
Sbjct: 205 VEGAQRRKTP--NEIALTILLIALTLVFLLVTATLWPFA---AYGGNAISVTVLVALLVC 259
Query: 320 NVPE---GLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMT 376
+P GLL+ + + R+ N + AVE C D
Sbjct: 260 LIPTTIGGLLSAIGIA---GMDRVLGFNVIATSGRAVEA-------CGD----------- 298
Query: 377 VTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNR--AEFTPNQEKIQILK 434
V L DK TG I +L NR +EF P Q +
Sbjct: 299 VDTLLLDK-----------TGTI----------------TLGNRLASEFIP----AQGVD 327
Query: 435 REVMGDASEAAILK------FSELAIGDVVEFRNRHKKALEIPFNS-TDKYQVSIHIMPN 487
+ + DA++ A L S + + + R ++L F T + ++S + N
Sbjct: 328 EKTLADAAQLASLADDTPEGKSIVILAKQLGIREDDVQSLHATFVEFTAQTRMSGINLDN 387
Query: 488 NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYAL 547
++ KGA + I ++++ ++Q+ G L C
Sbjct: 388 GR--MIRKGAVDAIKRHVE---------ANGGHIPTDLDQAVDQVARQGGTPLVVC---- 432
Query: 548 PPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDH 607
R G++ + D + + + A+ R GI+ IM+TGD+
Sbjct: 433 --------------------EDNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDN 472
Query: 608 PVTAKAIAKAVGI 620
+TA AIA G+
Sbjct: 473 RLTAAAIAAEAGV 485
Score = 64.1 bits (156), Expect = 3e-10
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
A +P K+ ++ Q G +VA+TGDG ND+PAL +AD+G+AM +G+ +K+ A+M+
Sbjct: 490 AEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAMN-SGTQAAKEAANMVD 548
Query: 738 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNV 771
LD + ++ V G+ + +++A++V
Sbjct: 549 LDSDPTKLIEVVHIGKQLLITRGALTTFSIANDV 582
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 70.0 bits (172), Expect = 4e-12
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 42/242 (17%)
Query: 153 MVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAE 212
+VP+ A +RDG+++ + ++L GDV++V G R+PAD +++ D S+LTGE+
Sbjct: 240 LVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESI 298
Query: 213 PQARNASES----TTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLES 268
P R E T V L S G + + RI L E
Sbjct: 299 PVERATGEKVPAGATSVDRLVTLEVLSEP-------------GASAI-DRILHLIEEAEE 344
Query: 269 GDTPIAKEIHHF-------MHLISAWAIFLGVTFFFLSFALGYAWI--DAVIFLIGI--- 316
PI + I F + L++ I + F + WI + LIG
Sbjct: 345 RRAPIERFIDRFSRIYTPAIMLVALLVILVPPLLFAAPWQ---EWIYRGLTLLLIGCPCA 401
Query: 317 IVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMT 376
+V + P A +T L+ A+R A ++K A+E LG +T+ DKTGTLT+ +
Sbjct: 402 LVISTP----AAITSGLAAAARRGA----LIKGGAALEQLGRVTTVAFDKTGTLTEGKPQ 453
Query: 377 VT 378
VT
Sbjct: 454 VT 455
Score = 58.9 bits (143), Expect = 1e-08
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 682 PTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDN 741
P K+ V + A +A+ GDG+ND+PA+K A IGIAMG +G+DV+ +TAD L +
Sbjct: 615 PEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMG-SGTDVALETADAALTHNR 672
Query: 742 FASIVTGVEEGRLIFDNLKKSIAYTL 767
+ +E R N++++I L
Sbjct: 673 LRGLAQMIELSRATHANIRQNITIAL 698
Score = 47.3 bits (113), Expect = 4e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
LGL+++ D R A+++ ++ GI+ +M+TGD+P A AIA +GI
Sbjct: 558 DVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI 607
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 67.1 bits (165), Expect = 3e-11
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 62/175 (35%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI---ISEGSET 627
R LG++ + D +P + + A+ R GI+ +M+TGD+P+TA AIA G+ ++E T
Sbjct: 435 RVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEA--T 492
Query: 628 LED-IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKL 686
ED +A R+ EQ E
Sbjct: 493 PEDKLALIRQ--------------------------EQAE-------------------- 506
Query: 687 HIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDN 741
RL A+ GDG ND+PAL +AD+G+AM +G+ +K+ +M+ LD N
Sbjct: 507 ------GRLVAMT---GDGTNDAPALAQADVGVAMN-SGTQAAKEAGNMVDLDSN 551
Score = 61.0 bits (149), Expect = 3e-09
Identities = 79/302 (26%), Positives = 123/302 (40%), Gaps = 46/302 (15%)
Query: 94 WTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEA----KSARIMDS 149
G++L I + S + + T +F+ EA + DS
Sbjct: 40 EVGSILTTILTIAPLLFQ---SGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADS 96
Query: 150 FKNM-VPQYANVIR-DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSL 207
+ +A +R G + + ++EL +GD+V V+ G+ IPAD +IE VD S++
Sbjct: 97 LRGAKKDTFARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAI 155
Query: 208 TGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAK----GIVILCGDN---TVMGRIA 260
TGE+ P R ES ++V G + IVI N + + R+
Sbjct: 156 TGESAPVIR---ESGG-----------DFSSVTGGTRVLSDWIVIRITANPGESFLDRMI 201
Query: 261 GLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDA-VIFLIGIIVA 319
L G + TP EI + L IFL V FA Y+ + L+ ++V
Sbjct: 202 ALVEGAKRQKTP--NEIALTILLAGLTIIFLLVVATLPPFA-AYSGGALSITVLVALLVC 258
Query: 320 NVPE---GLLATVTVCLSLTA--KRMASKNCVVKHLEAVETLGSTSTICSDKTGTLT-QN 373
+P GLL+ + + A R+ N + AVE G T+ DKTGT+T N
Sbjct: 259 LIPTTIGGLLSAIGI-----AGMDRVLQANVIATSGRAVEAAGDVDTLLLDKTGTITLGN 313
Query: 374 RM 375
R
Sbjct: 314 RQ 315
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 61.3 bits (148), Expect = 2e-09
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 17/230 (7%)
Query: 163 DGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNASEST 222
DG + I +S+L +G +V V G++IP D ++I+ VD S++TGE+ P + +
Sbjct: 112 DGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGGDF 170
Query: 223 TIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMH 282
V+ ++A VE T++ ++ + ++ GL G TP EI F
Sbjct: 171 DNVIGGTSVA-SDWLEVEITSE------PGHSFLDKMIGLVEGATRKKTP--NEIALFTL 221
Query: 283 LISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPE---GLLATVTVCLSLTAKR 339
L++ IFL V A + ++ LI + V +P GLL+ + + R
Sbjct: 222 LMTLTIIFLVVILTMYPLAKFLNFNLSIAMLIALAVCLIPTTIGGLLSAIGIA---GMDR 278
Query: 340 MASKNCVVKHLEAVETLGSTSTICSDKTGTLTQ-NRMTVTHLSFDKEVFE 388
+ N + K +VET G + + DKTGT+T NRM + FE
Sbjct: 279 VTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFE 328
Score = 59.3 bits (143), Expect = 8e-09
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
A P K++++ Q G IVA+TGDG ND+PAL +A++G+AM +G+ +K+ A++I
Sbjct: 485 AECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMN-SGTMSAKEAANLID 543
Query: 738 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNV 771
LD N ++ V G+ + +++A+++
Sbjct: 544 LDSNPTKLMEVVLIGKQLLMTRGSLTTFSIANDI 577
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 55.3 bits (133), Expect = 2e-07
Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 32/190 (16%)
Query: 568 TGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG-------- 619
L LG ++ D + VP+A+ R+AGI+V ++TGD TA +I +
Sbjct: 713 NNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQ 772
Query: 620 -IISEGS-----ETLED---IAKRRR--------VPVSSLDPRESTTIVIQGS----ILR 658
II+ S ++LED ++K+ SS + ++I G+ +L
Sbjct: 773 IIINSNSKESCRKSLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLD 832
Query: 659 DMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQ-RLGAIVAVTGDGVNDSPALKKADI 717
EQL + ++ R +P QK IV + R + GDG ND ++ AD+
Sbjct: 833 SELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADV 892
Query: 718 GIAMGITGSD 727
G+ GI+G +
Sbjct: 893 GV--GISGQE 900
Score = 32.6 bits (74), Expect = 1.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 354 ETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDY 391
E LG + SDKTGTLT+N+M S ++ VDY
Sbjct: 448 EDLGQIKYVFSDKTGTLTENKMEFQCAS----IWGVDY 481
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 51.5 bits (123), Expect = 3e-07
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 42/147 (28%)
Query: 570 LRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLE 629
L LGL+++ DP P +A+ + + AGI++ ++TGD+ +TA AIA+ +G+ +
Sbjct: 83 LVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGDNRLTANAIARLLGLF-------D 135
Query: 630 DIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIV 689
+ + + P +
Sbjct: 136 ALVSADLY-----------------------------------GLVGVGKPDPKIFELAL 160
Query: 690 EGCQRLGAIVAVTGDGVNDSPALKKAD 716
E V + GDGVND PA K A
Sbjct: 161 EELGVKPEEVLMVGDGVNDIPAAKAAG 187
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 45.2 bits (107), Expect = 2e-05
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 21/153 (13%)
Query: 590 VAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTT 649
V +G+ V G T IA + SE SET++++ + ++S D
Sbjct: 4 VEIYFGSGLIVDSKAGKVLYT---IATGGKLFSEVSETIQELHDMVDIYIASGD------ 54
Query: 650 IVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDS 709
R + QL + E VFA P K I+ ++ V + G+G ND
Sbjct: 55 --------RKGSLVQLAEFVGIPVERVFAGADPEMKAKIIRELKKRYEKVVMVGNGANDI 106
Query: 710 PALKKADIGIAMGITGSDVSKQ---TADMILLD 739
AL++AD+GI I V ++ TAD++L +
Sbjct: 107 LALREADLGI-CTIQQEGVPERLLLTADVVLKE 138
>gnl|CDD|233433 TIGR01482, SPP-subfamily, sucrose-phosphate phosphatase subfamily.
This model includes both the members of the SPP
equivalog model (TIGR01485), encompassing plants and
cyanobacteria, as well as those archaeal sequences which
are the closest relatives (TIGR01487). It remains to be
shown whether these archaeal sequences catalyze the same
reaction as SPP.
Length = 225
Score = 40.5 bits (95), Expect = 0.002
Identities = 42/186 (22%), Positives = 67/186 (36%), Gaps = 46/186 (24%)
Query: 589 AVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG-----IISEGSETL--------------- 628
A+ K S GI V++VTG+ A+A+AK +G I G E
Sbjct: 23 AIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNEGMDDIFLAYLEE 82
Query: 629 ---EDIAKRRRVPVSSLD---PRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSP 682
DI + P S L PR ++ + ++ I D E ++ + + A
Sbjct: 83 EWFLDIVIAKTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKEL----GLNLVA-VDS 137
Query: 683 TQKLHIVEG-----------CQRLG---AIVAVTGDGVNDSPALKKADIGIAMGITGSDV 728
+HI+ ++LG V GD ND + G+A+
Sbjct: 138 GFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVA-NAQPE 196
Query: 729 SKQTAD 734
K+ AD
Sbjct: 197 LKEWAD 202
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 40.1 bits (94), Expect = 0.002
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 34/190 (17%)
Query: 580 DPPRPAVPDAVAKCRSA---GIRVIMVTGDHPVTAKAIAKAVGI---------------- 620
+P R A+ R A GI V +VTG+ A+A+A +G
Sbjct: 14 EPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNK 73
Query: 621 -----ISEGSETLEDIAKRRRVPVSSLD---PRESTTIVIQGSILRDMTTEQLE---NVL 669
+ E D K++R P L PR S I+ +G + ++ E N++
Sbjct: 74 EDIFLANMEEEWFLDEEKKKRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLV 133
Query: 670 RTHREIVFARTSPTQKLHIVEGCQRLG---AIVAVTGDGVNDSPALKKADIGIAMGITGS 726
+ I + + + + + + LG VA GD ND + +A+
Sbjct: 134 ASGFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVA-NAD 192
Query: 727 DVSKQTADMI 736
D K+ AD +
Sbjct: 193 DQLKEIADYV 202
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 39.2 bits (92), Expect = 0.005
Identities = 49/198 (24%), Positives = 73/198 (36%), Gaps = 62/198 (31%)
Query: 588 DAVAKCRSA---GIRVIMVTGDHPVTAKAIAKAVG-----------IISEGSET----LE 629
AV R A GI VI+ TG+ A+A AK +G +IS G + L
Sbjct: 24 KAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLG 83
Query: 630 DIAKRRR-------------VPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRT---HR 673
DI + + ++ LDP T V + R + E++ +L
Sbjct: 84 DIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVA---LRRTVPVEEVRELLEELGLDL 140
Query: 674 EIV---FARTSPTQKLHI-----------VEGCQRLG---AIVAVTGDGVNDSPALKKAD 716
EIV FA +HI + + +G VA GD ND + A
Sbjct: 141 EIVDSGFA-------IHIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAG 193
Query: 717 IGIAMGITGSDVSKQTAD 734
G+A+ + K+ AD
Sbjct: 194 FGVAVA-NADEELKEAAD 210
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 38.4 bits (90), Expect = 0.013
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
V GDG+ND L+ A G+AMG + K AD +
Sbjct: 207 VIAFGDGMNDIEMLEAAGYGVAMG-NADEELKALADYV 243
Score = 31.9 bits (73), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 583 RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
P+ +A+AK R GI+V++ TG K I K +G+
Sbjct: 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGL 55
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 37.6 bits (88), Expect = 0.022
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDN 741
V GDG ND L+ A +G+AMG S K AD + +N
Sbjct: 205 VIAFGDGENDIEMLELAGLGVAMG-NASPEVKAAADYVTGSNN 246
Score = 30.7 bits (70), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 588 DAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
+A+ K + GI+V++ TG A + + +G+
Sbjct: 22 EAIKKLQEKGIKVVIATGRPYRGALPVLEELGL 54
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 35.9 bits (83), Expect = 0.090
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 692 CQRLGA----IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVT 747
+ LG ++A GD ND L+ A +G+AMG + K+ AD + ++ +
Sbjct: 198 AKLLGIKLEEVIAF-GDSTNDIEMLEVAGLGVAMG-NADEELKELADYVTTSNDEDGVAE 255
Query: 748 GVEEGRLI 755
+E+ L+
Sbjct: 256 ALEKLLLL 263
Score = 30.8 bits (70), Expect = 3.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 583 RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
P +A+A+ R G++V++ TG +I + +G+
Sbjct: 22 SPETKEALARLREKGVKVVLATGRPLPDVLSILEELGL 59
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 35.4 bits (82), Expect = 0.10
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 697 AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIV 746
VAV GDG ND +K A +GIA +Q AD+ + + I+
Sbjct: 170 NTVAV-GDGANDLSMIKAAGLGIAFN--AKPKLQQKADICINKKDLTDIL 216
>gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase.
Length = 260
Score = 35.0 bits (81), Expect = 0.16
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 11/112 (9%)
Query: 613 AIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSI--LRDMTTEQLENVLR 670
AI ++S + L + R P L + + QG + L D+ TE + L
Sbjct: 77 AILAGDALLSRAFQLLALLGHVRPEPKYILISELANAVGAQGEVGQLMDLETEGKDITLE 136
Query: 671 THREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKK--ADIGIA 720
+ IV +T+ L Q LGAIVA G D L D+G+A
Sbjct: 137 EYLRIVSYKTA---ALFYA-SVQ-LGAIVA--GADEEDEKDLYDFGRDLGLA 181
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 32.3 bits (74), Expect = 0.46
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 27/141 (19%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSS 641
P V +A+ + + GI++ + T + + +G+ + P
Sbjct: 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYYP--- 81
Query: 642 LDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAV 701
E + + +P + L ++ V +
Sbjct: 82 -----------------------KEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLM 118
Query: 702 TGDGVNDSPALKKA-DIGIAM 721
GD +ND K A +G+A+
Sbjct: 119 VGDSLNDIEMAKAAGGLGVAV 139
>gnl|CDD|234557 TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein
DotA/TraY. Members of this protein family include
transfer protein TraY of IncI1 plasmid R64 and DotA
(defect in organelle trafficking A) of Legionella
pneumophila.
Length = 652
Score = 33.9 bits (78), Expect = 0.51
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 14/200 (7%)
Query: 136 SYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVV---DVKFGDRIPADI 192
S +R F + + VI T + + G + GD A
Sbjct: 347 GPSGSGLGSRFSGLFDAYIEALSQVILADAYATPAGTSALAGAEAVASAAEAGDNFSAIW 406
Query: 193 RIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGT--AKGIVILC 250
+ + + + + S T ++ KN+ + E T A ++
Sbjct: 407 KFLRGLM----SMWVGTSISFTSNETSSGTNPLIAMKNIGDYLIGIAEATYGAGAVLGAV 462
Query: 251 GDNTVMGRIAGLTSGLESGDTPIAKE-IHHFMHLISAWAIFLGVTFFFLSFALGYAWIDA 309
G +G + G G + ++ A+ L + L++ L +I
Sbjct: 463 GSGVALGGVIAGFLGFVGGGAAALSGLLSAISFVLFPLALALFIMGLILAYYL--PFIPF 520
Query: 310 VIFLIGII--VANVPEGLLA 327
+I++ ++ + V E ++A
Sbjct: 521 IIWMGAVVGWLILVVEAVVA 540
>gnl|CDD|163267 TIGR03441, urea_trans_yut, urea transporter, Yersinia type.
Members of this protein family are bacterial urea
transporters, found not only is species that contain
urease, but adjacent to the urease operon. It was
characterized in Yersinia pseudotuberculosis. Members
are homologous to eukaryotic members of solute carrier
family 14, a family that includes urea transporters, and
to bacterial proteins in species with no detectable urea
degradation system [Transport and binding proteins,
Other].
Length = 292
Score = 33.4 bits (77), Expect = 0.52
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 272 PIAKEIHHFMHLISAWAIFLGVT-FFFLSFALGYAWIDAVIFLIGIIVANVPEGLLATVT 330
P+A + A+ F G + F L A+ V+ LIGI++A+ ++A +
Sbjct: 152 PVAFGGPARENFFVAF--FKGFSQVFLLDSAIA-----GVLILIGILIASRKAAIMALIG 204
Query: 331 VCLSLTA 337
+S+ A
Sbjct: 205 ALISILA 211
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 33.0 bits (76), Expect = 0.53
Identities = 31/142 (21%), Positives = 49/142 (34%), Gaps = 32/142 (22%)
Query: 579 IDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVP 638
P + VA ++AG +V++++G + IA+ +GI + LE +
Sbjct: 75 FLRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGK---- 130
Query: 639 VSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAI 698
L R I + L + +L I L
Sbjct: 131 ---LTGRVVGPICDGEGKA-----KALRELAA--------------ELGI-----PLEET 163
Query: 699 VAVTGDGVNDSPALKKADIGIA 720
VA GD ND P L+ A + IA
Sbjct: 164 VAY-GDSANDLPMLEAAGLPIA 184
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 33.1 bits (76), Expect = 0.63
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 703 GDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASI 745
GD ND L+ A +G+AMG D K AD+++ D+ SI
Sbjct: 222 GDNFNDISMLEAAGLGVAMG-NADDAVKARADLVIGDNTTPSI 263
Score = 31.9 bits (73), Expect = 1.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPV 609
P +A+A+ R AG +VI+VTG H V
Sbjct: 23 PESLEALARAREAGYKVIIVTGRHHV 48
>gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase. This clade of
sequences are the closest homologs to the PhnX enzyme,
phosphonoacetaldehyde (Pald) hydrolase (phosphonatase,
TIGR01422). This phosphonatase-like enzyme and PhnX
itself are members of the haloacid dehalogenase (HAD)
superfamily (pfam00702) having a a number of distinctive
features that set them apart from typical HAD enzymes.
The typical HAD N-terminal motif DxDx(T/V) here is DxAGT
and the usual conserved lysine prior to the C-terminal
motif is instead an arginine. Also distinctive of
phosphonatase, and particular to its bi-catalytic
mechanism is a conserved lysine in the variable "cap"
domain. This lysine forms a Schiff base with the
aldehyde of phosphonoacetaldehyde, providing, through
the resulting positive charge, a polarization of the C-P
bond necesary for cleavage as well as a route to the
initial product of cleavage, an ene-amine. The
conservation of these elements in this
phosphonatase-like enzyme suggests that the substrate is
also, like Pald, a 2-oxo-ethylphosphonate. Despite this,
the genomic context of members of this family are quite
distinct from PhnX, which is almost invariably
associated with the 2-aminoethylphosphonate transaminase
PhnW (TIGR02326), the source of the substrate Pald.
Members of this clade are never associated with PhnW,
but rather associate with families of FAD-dependent
oxidoreductases related to deaminating amino acid
oxidases (pfam01266) as well as zinc-dependent
dehydrogenases (pfam00107). Notably, family members from
Arthrobacter aurescens TC1 and Nocardia farcinica IFM
10152 are adjacent to the PhnCDE ABC cassette
phosphonates transporter (GenProp0236) typically found
in association with the phosphonates C-P lyase system
(GenProp0232). These observations suggest two
possibilities. First, the substrate for this enzyme
family is also Pald, the non-association with PhnW not
withstanding. Alternatively, the substrate is something
very closely related such as
hydroxyphosphonoacetaldehyde (Hpald). Hpald could come
from oxidative deamination of
1-hydroxy-2-aminoethylphosphonate (HAEP) by the
associated oxidase. HAEP would not be a substrate for
PhnW due to its high specificity for AEP. HAEP has been
shown to be a constituent of the sphingophosphonolipid
of Bacteriovorax stolpii, and presumably has other
natural sources. If Hpald is the substrate, the product
would be glycoaldehyde (hydroxyacetaldehyde), and the
associated alcohol dehydrogenase may serve to convert
this to glycol.
Length = 220
Score = 32.5 bits (74), Expect = 0.92
Identities = 33/147 (22%), Positives = 46/147 (31%), Gaps = 47/147 (31%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTG-DHPVTAKAIAK---AVGIISEGSETLEDIAKRRRV 637
P +A RS+GI+V + TG D + + K VG + D+A R
Sbjct: 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPA 147
Query: 638 PVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGA 697
P ILR M +++V
Sbjct: 148 P---------------DLILRAMELTGVQDVQS--------------------------- 165
Query: 698 IVAVTGDGVNDSPALKKADIGIAMGIT 724
VAV GD ND A A G +G+
Sbjct: 166 -VAVAGDTPNDLEAGINAGAGAVVGVL 191
>gnl|CDD|225452 COG2899, COG2899, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 346
Score = 32.7 bits (75), Expect = 1.0
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 742 FASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFL--MFIVIGIPL---------PLG 790
F V V E L FDN A A+ + +++PF F+ GI + PL
Sbjct: 37 FICAVLAVLEISLSFDN-----AIVNAAILKDMSPFWQKRFLTWGILIAVFGMRLVFPLV 91
Query: 791 VVAILCIDLGTDMWPAISLAYEKAES---DIMRRHP 823
+VA+ G D A+ LA E ES I HP
Sbjct: 92 IVAV---AAGLDPIRAMKLALEPPESYAKIITDAHP 124
>gnl|CDD|152818 pfam12383, SARS_3b, Severe acute respiratory syndrome coronavirus
3b protein. This family of proteins is found in
viruses. Proteins in this family are typically between
32 and 154 amino acids in length. This family contains
the SARS coronavirus 3b protein which is predominantly
localized in the nucleolus, and induces G0/G1 arrest and
apoptosis in transfected cells.
Length = 153
Score = 31.3 bits (70), Expect = 1.1
Identities = 21/100 (21%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 598 IRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTI----VIQ 653
+ ++ VT +K K V I+ G++ L+ ++ ++ P+ +T++ ++Q
Sbjct: 27 LSLLKVTAFQHQNSKKTTKLVVILRIGTQVLKTMSL-----YMAISPKFTTSLSLHKLLQ 81
Query: 654 GSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQ 693
+L+ + + L ++L+THR + +++ Q+L I + Q
Sbjct: 82 TLVLKMLHSSSLTSLLKTHRMCKYTQSTALQELLIQQWIQ 121
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 31.5 bits (72), Expect = 1.2
Identities = 5/45 (11%), Positives = 23/45 (51%)
Query: 576 MSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
+ P P V + + + ++ G+++++++ + + + +G+
Sbjct: 72 LESRLEPFPDVVELLRRLKAKGVKLVILSNGSREAVERLLEKLGL 116
>gnl|CDD|119344 cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar
to Escherichia coli Yqfb. The ASCH domain, a small
beta-barrel domain found in all three kingdoms of life,
resembles the RNA-binding PUA domain and may also
interact with RNA. ASCH has been proposed to function as
an RNA-binding domain during coactivation,
RNA-processing and the regulation of prokaryotic
translation.
Length = 100
Score = 29.9 bits (68), Expect = 1.6
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 153 MVPQYANVIRDGQKKTILS-----SELVRGDVVDVKFGDRIPADIRIIE 196
+Y I G KKT S L GDVV+V G+RI + I
Sbjct: 4 FFERYEEAILSG-KKTATIRDGGESHLKPGDVVEVHTGERIFGEAEITS 51
>gnl|CDD|219055 pfam06484, Ten_N, Teneurin Intracellular Region. This family is
found in the intracellular N-terminal region of the
Teneurin family of proteins. These proteins are
'pair-rule' genes and are involved in tissue patterning,
specifically probably neural patterning. The
intracellular domain is cleaved in response to
homophilic interaction of the extracellular domain, and
translocates to the nucleus. Here it probably carries
out to some transcriptional regulatory activity. The
length of this region and the conservation suggests that
there may be two structural domains here (personal obs:C
Yeats).
Length = 370
Score = 31.1 bits (70), Expect = 2.6
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 497 APERILDRCSTMKQGDKDVELDAKNR------HEVEEILEQLGNYGERVLGFCDYALPP 549
P++ T+K D D + NR HE +E Q ++ R LGF + PP
Sbjct: 25 VPQKSYSSSETLKAYDHDSRMAYGNRVKDLVHHESDEFSRQGTDFTLRELGFGE-PSPP 82
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 31.1 bits (71), Expect = 3.3
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 11/84 (13%)
Query: 59 QFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLI--EFHISEDASK 116
+ LL+ + W +L FE ++W +VL + + +
Sbjct: 272 EVLLKYFRQLWRW-RNRRLWPLL----FEYIVSVIWAYSVLLLLILWLIQVNILPYTPLV 326
Query: 117 DNL----WLGIVLVTVCIITGIFS 136
++ W G++L +C++ S
Sbjct: 327 YSISLFQWSGLLLTFICLLQFTVS 350
>gnl|CDD|221719 pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This
family includes both TraG and TraD as well as VirD4
proteins. TraG is essential for DNA transfer in
bacterial conjugation. These proteins are thought to
mediate interactions between the DNA-processing (Dtr)
and the mating pair formation (Mpf) systems. This domain
interacts with the relaxosome component TraM via the
latter's tetramerisation domain. TraD is a hexameric
ring ATPase that forms the cytoplasmic face of the
conjugative pore.
Length = 126
Score = 29.5 bits (67), Expect = 4.0
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 584 PAVPDAVAKCRSAGIRVIMVT----------GDHPVTAKAI-----AKAVGIISEGSETL 628
P + +A++ RS GI ++++ G A+ I K ++ ET
Sbjct: 16 PDLEEALSTGRSRGISLVLILQSLAQLEELYGKD--GAETILGNCDVKIFLGGND-PETA 72
Query: 629 EDIAKR 634
E I+K
Sbjct: 73 EYISKL 78
>gnl|CDD|188522 TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase
WcaI. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 407
Score = 30.7 bits (69), Expect = 4.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 855 SYFVIMAQNGWMPDKLIGI 873
S+F +MAQ W PD++IG+
Sbjct: 94 SFFPLMAQRRWKPDRIIGV 112
>gnl|CDD|206259 pfam14089, KbaA, KinB-signalling pathway activation in sporulation.
This family of small proteins is found in the membrane
and is necessary for kinase KinB signalling during
sporulation. There is a conserved GFF sequence motif.
The initiation of sporulation in Bacillus subtilis is
dependent on the phosphorylation of the Spo0A
transcription factor mediated by the phospho-relay and
by two major kinases, KinA and KinB.
Length = 180
Score = 29.9 bits (68), Expect = 4.3
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 283 LISAWAIFLGVTFFFLSFA------LGYAWIDAVIFLIGIIVA 319
++ A+ +F V F +L+F Y + ++ ++G+IVA
Sbjct: 77 VLIAFVLFDLVYFRYLAFGEEGESIWSYIILPLLLLIVGLIVA 119
>gnl|CDD|184956 PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose
2'-O-methyltransferase; Provisional.
Length = 287
Score = 30.6 bits (69), Expect = 4.4
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 27/104 (25%)
Query: 590 VAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIIS-----EG---------SETLEDIAKRR 635
V CR AGIRV+ + G P A A G+ S EG + L+ +
Sbjct: 106 VRTCREAGIRVVPLPG--PCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKALEAEP 163
Query: 636 RVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFAR 679
R +L EST ++ L D+ VL R +V AR
Sbjct: 164 R----TLIFYESTHRLLDS--LEDIVA-----VLGESRYVVLAR 196
>gnl|CDD|144440 pfam00845, Gemini_BL1, Geminivirus BL1 movement protein.
Geminiviruses encode two movement proteins that are
essential for systemic infection of their host but
dispensable for replication and encapsidation.
Length = 276
Score = 30.4 bits (69), Expect = 4.5
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 622 SEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRT 671
SE R+ +SLDP +S + V M+ L ++ T
Sbjct: 212 SEVENAEHPYRHLHRLGTASLDPGDSASQVGSSI---TMSRADLNEIIET 258
>gnl|CDD|182988 PRK11133, serB, phosphoserine phosphatase; Provisional.
Length = 322
Score = 30.3 bits (69), Expect = 4.7
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 699 VAVTGDGVNDSPALKKADIGIA 720
VA+ GDG ND P +K A +GIA
Sbjct: 268 VAI-GDGANDLPMIKAAGLGIA 288
>gnl|CDD|206312 pfam14143, YrhC, YrhC-like protein. The YrhC-like protein family
includes the B. subtilis YrhC protein, which is
functionally uncharacterized. YrhC is on the same operon
as the MccA and MccB genes, which are involved in the
conversion of methionine to cysteine. Expression of this
operon is repressed in the presence of sulphate or
cysteine. This family of proteins is found in bacteria.
Proteins in this family are approximately 80 amino acids
in length.
Length = 72
Score = 28.0 bits (63), Expect = 5.2
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 274 AKEIHHFMHLISAWAIFLGVTFFFLSFALGYA 305
KE ++ A +FLG FFF A Y
Sbjct: 34 GKETAQKPIMLGAIVVFLGGAFFFFRRAAIYQ 65
>gnl|CDD|238240 cd00419, Ferrochelatase_C, Ferrochelatase, C-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 135
Score = 29.0 bits (66), Expect = 5.5
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 583 RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIA 632
P+ DA+ + G++ ++V +G +S+ ETL ++
Sbjct: 76 EPSTDDALEELAKEGVKNVVVV------------PIGFVSDHLETLYELD 113
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 30.2 bits (69), Expect = 5.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 588 DAVAKCRSAGIRVIMVTGDHPVT---AKAIAKA----VGII 621
+AVA+ AG I++ GDH +T + +A+ VG+I
Sbjct: 71 EAVAEIAEAGAIPIVLGGDHSITYPAVRGLAERHKGKVGVI 111
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic
compound extrusion (MATE)-like proteins similar to
Bacillus subtilis yoeA. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. A number of family members are involved in the
synthesis of peptidoglycan components in bacteria.
Length = 431
Score = 30.5 bits (70), Expect = 5.6
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 265 GLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSF--ALGYAWIDAVIFLIGIIVANVP 322
GL + D + + ++ + S I G+ F F LG +I ++ + + +P
Sbjct: 331 GLFTSDPEVIEIGAEYLRIYSIDYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIP 390
>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase. This
family is part of the HAD superfamily.
Length = 101
Score = 28.5 bits (65), Expect = 5.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 584 PAVPDAVAKCRSAGIRVIMVT 604
P +A+ R+AG V+ VT
Sbjct: 17 PGAAEALNALRAAGKPVVFVT 37
>gnl|CDD|215479 PLN02887, PLN02887, hydrolase family protein.
Length = 580
Score = 30.2 bits (68), Expect = 6.0
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 698 IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
I+A+ GDG ND L+ A +G+A+ G++ +K AD+I
Sbjct: 526 IMAI-GDGENDIEMLQLASLGVALS-NGAEKTKAVADVI 562
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and chromosome
partitioning / Transcription / DNA replication,
recombination, and repair].
Length = 314
Score = 30.0 bits (67), Expect = 6.7
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 382 FDKEVFEVDYFKDPTGLIEKVRNMSSY-KDLTLAGSLCNRAEFTPNQEKIQILKREVMGD 440
++ VFE+ D + EKV+ +D L E P ++K +L++ +
Sbjct: 113 VEELVFELLELIDVSLTEEKVKKYEEMNQDSILNNLERPTPEVMPGKQK-NVLQKRMKLK 171
Query: 441 ASEAAI 446
+
Sbjct: 172 KRQLER 177
>gnl|CDD|216226 pfam00978, RdRP_2, RNA dependent RNA polymerase. This family may
represent an RNA dependent RNA polymerase. The family
also contains the following proteins: 2A protein from
bromoviruses, putative RNA dependent RNA polymerase from
tobamoviruses, non structural polyprotein from
togaviruses.
Length = 441
Score = 29.5 bits (67), Expect = 8.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 448 KFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILD 503
S L I + EF + + LEI F+ DK Q +H++ E +L + G + D
Sbjct: 195 MTSSL-IAERFEFLDASEDFLEIDFSKFDKSQGELHLLVQLE-ILKLLGLDPELAD 248
>gnl|CDD|216794 pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain
has no known function. The domain contains three
conserved cysteines at its C terminus.
Length = 162
Score = 28.7 bits (65), Expect = 8.8
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 456 DVVEFRNRHKKALEI----PFNSTDKYQVSIHIMPNNEYLLVMKG--APERILDRCSTMK 509
D V R E+ + Q+ ++ YLL +G A E +L K
Sbjct: 58 DFVTRRKGGLVVHEVKKSSKMEEAHRMQLLYYL-----YLLKKRGIEAKEGVLHYPKERK 112
Query: 510 QGDKDVELDAKNRHEVEEILEQ 531
+ ++VEL ++R E+EE +++
Sbjct: 113 R--EEVELTEEDREELEEAIKE 132
>gnl|CDD|184052 PRK13435, PRK13435, response regulator; Provisional.
Length = 145
Score = 28.5 bits (64), Expect = 9.2
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 597 GIRVIMVTGDHPVTAKAIAKAVGIIS-----EGSETLEDIAKRRRV 637
G+ V+ +TG+ A A+G+I+ G RRV
Sbjct: 78 GVEVVFMTGNPERVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 52,573,324
Number of extensions: 5392073
Number of successful extensions: 6568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6431
Number of HSP's successfully gapped: 172
Length of query: 1010
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 904
Effective length of database: 6,236,078
Effective search space: 5637414512
Effective search space used: 5637414512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.3 bits)