RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3624
(1010 letters)
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 1445 bits (3743), Expect = 0.0
Identities = 642/1008 (63%), Positives = 780/1008 (77%), Gaps = 6/1008 (0%)
Query: 7 PGANKPEHHKSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGP 66
K + LD LKKE+ +DDHKL L +L +Y T +GLT+A+AK+ L RDGP
Sbjct: 23 KKKGKKDKIDKKRDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGP 82
Query: 67 NSLTPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLV 126
NSLTP TP W+ + LF GFS+LLW GA+LCF+AY I+ ++ + DNL+LG+VL
Sbjct: 83 NSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLS 142
Query: 127 TVCIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGD 186
TV I+TG FSY QEAKS+RIMDSFKNMVPQ A VIRDG+K TI + +V GD+V+VK GD
Sbjct: 143 TVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGD 202
Query: 187 RIPADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGI 246
RIPAD+RII +HG KVDNSSLTGE+EPQ R+ S+ LE +N+AFFSTN VEGTA+G+
Sbjct: 203 RIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGV 262
Query: 247 VILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAW 306
V+ GD TVMGRIA L SGLE G TPIA EI HF+H+I+ A+FLGV+FF LS LGY+W
Sbjct: 263 VVYTGDRTVMGRIATLASGLEVGRTPIAIEIEHFIHIITGVAVFLGVSFFILSLILGYSW 322
Query: 307 IDAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDK 366
++AVIFLIGIIVANVPEGLLATVTVCL+LTAKRMA KNC+VK+LEAVETLGSTSTICSDK
Sbjct: 323 LEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDK 382
Query: 367 TGTLTQNRMTVTHLSFDKEVFEVDYFKD-PTGLIEKVRNMSSYKDLTLAGSLCNRAEFTP 425
TGTLTQNRMTV H+ FD ++ E D ++ +K +++ L+ +LCNRA F
Sbjct: 383 TGTLTQNRMTVAHMWFDNQIHEADTTENQSGAAFDK--TSATWSALSRIAALCNRAVFQA 440
Query: 426 NQEKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIM 485
Q+ + ILKR V GDASE+A+LK EL G V R+R+ K +EIPFNST+KYQ+SIH
Sbjct: 441 GQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHEN 500
Query: 486 PN---NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGF 542
+ YLLVMKGAPERILDRCST+ + L + + +LG GERVLGF
Sbjct: 501 EKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGF 560
Query: 543 CDYALPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIM 602
C +ALP K+ G+ +D PNFP T L F+GLM+MIDPPR AVPDAV KCRSAGI+VIM
Sbjct: 561 CHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIM 620
Query: 603 VTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTT 662
VTGDHP+TAKAIAK VGIISEG+ET+EDIA R +P+ ++PR++ V+ GS L+D++T
Sbjct: 621 VTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLST 680
Query: 663 EQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMG 722
E L+++L H EIVFARTSP QKL IVEGCQR GAIVAVTGDGVNDSPALKKADIG+AMG
Sbjct: 681 EVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMG 740
Query: 723 ITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIV 782
I+GSDVSKQ ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTL SN+PEITPFL+FI+
Sbjct: 741 ISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFII 800
Query: 783 IGIPLPLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYG 842
+PLPLG V ILCIDLGTDM PAISLAYE+AESDIM+R PRNP TDKLV +L+ +AYG
Sbjct: 801 GNVPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYG 860
Query: 843 QIGVIEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILE 902
QIG+I+A GFFSYFVI+A+NG++P LIG R RW+ I+D+EDS+GQ+WTY RKI+E
Sbjct: 861 QIGMIQALGGFFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVE 920
Query: 903 YTCHTAFFIAIVVVQWADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMD 962
+TCHT+FFI+IVVVQWADL+ICKTR NS+ QGM N +L FG+ ET A +SYCPG D
Sbjct: 921 FTCHTSFFISIVVVQWADLIICKTRRNSIFQQGMKNKILIFGLFEETALAAFLSYCPGTD 980
Query: 963 EILKTYPVRAEWWLPAVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
L+ YP++ WW A P++++IF+YDE RRF +R P GWVE+ETYY
Sbjct: 981 VALRMYPLKPSWWFCAFPYSLIIFLYDEMRRFIIRRSPGGWVEQETYY 1028
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 1440 bits (3731), Expect = 0.0
Identities = 553/1005 (55%), Positives = 715/1005 (71%), Gaps = 5/1005 (0%)
Query: 10 NKPEHHKSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSL 69
K KL+N+KKE+E++DH+L + +L +YQTSA KGL+++ A + LLRDGPN+L
Sbjct: 31 AGRGGGKRKEKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNAL 90
Query: 70 TPAKKTPAWVILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVC 129
P + TP +V + L G L+W A +C IA+ I+ + + DNL+L + L+ V
Sbjct: 91 RPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVV 150
Query: 130 IITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIP 189
++TG F Y QE KS I+ SFKN+VPQ A VIRDG K I + +LV GD+V++K GDR+P
Sbjct: 151 VVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVP 210
Query: 190 ADIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVIL 249
ADIRI+++ G KVDNSSLTGE+EPQ R+ + LE +N+AFFST +EGTA+G+V+
Sbjct: 211 ADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVN 270
Query: 250 CGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDA 309
GD T++GRIA L SG+E+ TPIA EI HF+ +I+ AI G TFF ++ +GY ++ A
Sbjct: 271 TGDRTIIGRIASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFIVAMCIGYTFLRA 330
Query: 310 VIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGT 369
++F + I+VA VPEGLLATVTVCLSLTAKR+ASKNCVVK+LEAVETLGSTS ICSDKTGT
Sbjct: 331 MVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGT 390
Query: 370 LTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEK 429
LTQNRMTV+HL FD + D +D +G + +++ L +LCNRA F Q+
Sbjct: 391 LTQNRMTVSHLWFDNHIHSADTTEDQSGQTFDQSS-ETWRALCRVLTLCNRAAFKSGQDA 449
Query: 430 IQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPN-- 487
+ + KR V+GDASE A+LKFSEL +G+ + +R R K EIPFNST+K+Q+SIH + +
Sbjct: 450 VPVPKRIVIGDASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPR 509
Query: 488 -NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYA 546
++LVMKGAPER+L+RCS++ +++ LD + R + LG GERVLGFC
Sbjct: 510 DPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLY 569
Query: 547 LPPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGD 606
L +P G+ + NFP +GL F GL+SMIDPPR VPDAV KCR+AGIRVIMVTGD
Sbjct: 570 LSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGD 629
Query: 607 HPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLE 666
HP+TAKAIA +VGIISEGSET+EDIA R RVPV ++ +++ VI G L+DM +L
Sbjct: 630 HPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELV 689
Query: 667 NVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGS 726
LRTH E+VFARTSP QKL IVE CQRLGAIVAVTGDGVNDSPALKKADIG+AMGI GS
Sbjct: 690 EALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGS 749
Query: 727 DVSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIP 786
D +K ADMILLDDNFASIVTGVE+GRLIFDNLKKSIAYTL N+PE+TP+L++I + +P
Sbjct: 750 DAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVP 809
Query: 787 LPLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGV 846
LPLG + IL I+L TD++P++SLAYEKAESDIM PRNP D+LV L +Y QIG
Sbjct: 810 LPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGA 869
Query: 847 IEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCH 906
I++ AGF YF MAQ GW P +G+R +WE+ + DL+DSYGQEWT+ R +YTC+
Sbjct: 870 IQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCY 929
Query: 907 TAFFIAIVVVQWADLLICKTRYNSLVHQG-MNNWVLNFGIVFETVAACIVSYCPGMDEIL 965
T FFI+I + Q AD+LI KTR S QG N +L IVF+ C + YCPGM I
Sbjct: 930 TVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIF 989
Query: 966 KTYPVRAEWWLPAVPFAIVIFIYDECRRFWLRTHPNGWVERETYY 1010
P+R +WWL +PF ++IF+YDE R+ +R P W ++E YY
Sbjct: 990 NFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWDQELYY 1034
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 823 bits (2129), Expect = 0.0
Identities = 287/1031 (27%), Positives = 449/1031 (43%), Gaps = 102/1031 (9%)
Query: 33 HKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFSVL 92
H ++ A + S GLT Q K+ L + G N L + W ++++ FE V
Sbjct: 6 HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQ-FEDLLVR 64
Query: 93 -LWTGAVLCFI-AYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSF 150
L A + F+ A+ E + A + V++ + I I QE + +++
Sbjct: 65 ILLLAACISFVLAWFEEGEETITAFVEP----FVILLILIANAIVGVWQERNAENAIEAL 120
Query: 151 KNMVPQYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRI--IESHGFKVDNSS 206
K P+ V R +K + I + ++V GD+V+V GD++PADIRI I+S +VD S
Sbjct: 121 KEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSI 180
Query: 207 LTGEAEP---QARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLT 263
LTGE+ + + + KN+ F TN G A GIV G +T +G+I
Sbjct: 181 LTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQM 240
Query: 264 SGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAW----------IDAVIFL 313
+ E TP+ +++ F +S + V + ++ I
Sbjct: 241 AATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIA 300
Query: 314 IGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQN 373
+ + VA +PEGL A +T CL+L +RMA KN +V+ L +VETLG TS ICSDKTGTLT N
Sbjct: 301 VALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTN 360
Query: 374 RMTVTHL---------SFDKEVFEVD---YFKDPTGLIEK------VRNMSSYKDLTLAG 415
+M+V + F + Y P G + K +L
Sbjct: 361 QMSVCKMFIIDKVDGDFCSLNEFSITGSTY--APEGEVLKNDKPIRSGQFDGLVELATIC 418
Query: 416 SLCNRAEFTPNQEKIQILKREVMGDASEAAILKFSE----------------LAIGDVVE 459
+LCN + N+ K E +G+A+E A+ E A
Sbjct: 419 ALCNDSSLDFNETKGV---YEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSV 475
Query: 460 FRNRHKKALEIPFNSTDKYQVSIHIMPNNE-----YLLVMKGAPERILDRCSTMKQGDKD 514
R KK + F+ K + + +KGAPE ++DRC+ ++ G
Sbjct: 476 IRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTR 535
Query: 515 VELDAKNRHEVEEILEQLG--NYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRF 572
V + + ++ ++++ G R L PP + + S + T L F
Sbjct: 536 VPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYE-TDLTF 594
Query: 573 LGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIA 632
+G++ M+DPPR V ++ CR AGIRVIM+TGD+ TA AI + +GI E E
Sbjct: 595 VGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEV----- 649
Query: 633 KRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGC 692
G D+ + R FAR P+ K IVE
Sbjct: 650 ---------------ADRAYTGREFDDLPLAEQREACRRAC--CFARVEPSHKSKIVEYL 692
Query: 693 QRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEG 752
Q I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEEG
Sbjct: 693 QSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEG 751
Query: 753 RLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYE 812
R I++N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L +
Sbjct: 752 RAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFN 811
Query: 813 KAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSYFVIMAQNGWMPDKLIG 872
+ DIM R PR+P + L++G L F Y IG A + P
Sbjct: 812 PPDLDIMDRPPRSP-KEPLISGWLFF-RYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYH 869
Query: 873 IRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWADLLICKTRYNSLV 932
+ C + + + + + T +V ++ + L + SL+
Sbjct: 870 QLTHFMQCTEDHPHFEGLDCEIFEAPEPM-----TMALSVLVTIEMCNALNSLSENQSLM 924
Query: 933 HQGM-NNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWWLPAVPFAIVIFIYDEC 991
N L I ++ Y + I K + WL + ++ + DE
Sbjct: 925 RMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEI 984
Query: 992 RRFWLRTHPNG 1002
+F R + G
Sbjct: 985 LKFIARNYLEG 995
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 653 bits (1686), Expect = 0.0
Identities = 195/980 (19%), Positives = 392/980 (40%), Gaps = 140/980 (14%)
Query: 19 SKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAW 78
S L+++K E +D K+P++++ + + S E GLT+ + + + GPN L KK
Sbjct: 2 SSLEDIKNE-TVDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKL-EEKKESKL 58
Query: 79 VILLKHLFEGFSVLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYS 138
+ L ++ S ++ A++ + + + ++ + +I S+
Sbjct: 59 LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQD------FVGIICLLVINSTISFI 112
Query: 139 QEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESH 198
+E + + + V+RDG+ ++ LV GD+V +K GD IPAD R++E
Sbjct: 113 EENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGD 172
Query: 199 GFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGR 258
KVD S+LTGE+ P + F + +G + +VI G +T G+
Sbjct: 173 PLKVDQSALTGESLPVTK----------HPGQEVFSGSTCKQGEIEAVVIATGVHTFFGK 222
Query: 259 IAGLTSGLESGDTPIAKEIHHFMH-LISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGII 317
A L + K + + I + AI + + + + D + L+ ++
Sbjct: 223 AAHLVDS-TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLL 281
Query: 318 VANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTV 377
+ +P + ++V +++ + R++ + + K + A+E + +CSDKTGTLT N+++V
Sbjct: 282 IGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV 341
Query: 378 THLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREV 437
EVF KD + L ++ +R E
Sbjct: 342 DKNLV--EVFCKGVEKD---------------QVLLFAAMASRVE--------------- 369
Query: 438 MGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGA 497
DA +AA++ + D E R ++ +PFN DK +I + + V KGA
Sbjct: 370 NQDAIDAAMVG----MLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGA 425
Query: 498 PERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFE 557
PE+IL+ + +V I+++ G R L A
Sbjct: 426 PEQILELA----------KASNDLSKKVLSIIDKYAERGLRSLAV-----------ARQV 464
Query: 558 LKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKA 617
+ P F+GL+ + DPPR + + + + G+ V M+TGD K +
Sbjct: 465 VPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRR 524
Query: 618 VGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVF 677
+G+ + ++ ++ ++ + +E ++ F
Sbjct: 525 LGMGTNMYP---------------------SSALLGTHKDANLASIPVEELIEKAD--GF 561
Query: 678 ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMIL 737
A P K IV+ Q IV +TGDGVND+PALKKADIGIA+ +D ++ +D++L
Sbjct: 562 AGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVL 620
Query: 738 LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCI 797
+ + I++ V R IF +K Y ++ + + F++ +I +L I
Sbjct: 621 TEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIW-EFDFSAFMVLII 679
Query: 798 DLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACAGFFSYF 857
+ D ++++ ++ + P + ++ ++ G +A ++
Sbjct: 680 AILNDG-TIMTISKDRVKPS---PTPDSWKLKEIFATGVVL------GGYQAIMTVIFFW 729
Query: 858 VIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQ 917
+ + ++ + + D+ + A ++ + ++
Sbjct: 730 AAHKTDFF-----------SDTFGVRSIRDNNHE-------------LMGAVYLQVSIIS 765
Query: 918 WADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWWLP 977
A + + ++R S V +L + + A +++ E K + W
Sbjct: 766 QALIFVTRSRSWSFV--ERPGALLMIAFLIAQLIATLIAV-YANWEFAKIRGIGWGWAGV 822
Query: 978 AVPFAIVIFIYDECRRFWLR 997
++IV + + +F +R
Sbjct: 823 IWLYSIVTYFPLDVFKFAIR 842
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 619 bits (1599), Expect = 0.0
Identities = 202/991 (20%), Positives = 371/991 (37%), Gaps = 158/991 (15%)
Query: 10 NKPEHHKSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSL 69
+ S + ++E E QT GLTS + Q + G N +
Sbjct: 46 DALIEDLESHDGHDAEEEEEEATPGGGRVVPEDMLQTDTRVGLTSEEVVQRRRKYGLNQM 105
Query: 70 TPAKKTPAWVILLKHLFEGFSVLLWTGAVL-CFIAYLIEFHISEDASKDNLWLGIVLVTV 128
+K ++ L ++ AVL + ++F V+ +
Sbjct: 106 -KEEKENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVDF--------------GVICGL 150
Query: 129 CIITGIFSYSQEAKSARIMDSFKNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRI 188
++ + + QE ++ I+D K + A V+RDG K I + E+V GD++ V+ G I
Sbjct: 151 LLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTII 210
Query: 189 PADIRIIESHGF-KVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIV 247
PAD RI+ F +VD S+LTGE+ ++ + F S+ G A ++
Sbjct: 211 PADGRIVTDDAFLQVDQSALTGESLAVDKHK----------GDQVFASSAVKRGEAFVVI 260
Query: 248 ILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWI 307
GDNT +GR A L + G + ++ ++ IF + + SF +
Sbjct: 261 TATGDNTFVGRAAALVNAASGGSGHFTEVLNGIGTILLILVIFTLLIVWVSSFYRSNPIV 320
Query: 308 DAVIFLIGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKT 367
+ F + I + VP GL A VT +++ A +A K +V+ L A+E+L +CSDKT
Sbjct: 321 QILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKT 380
Query: 368 GTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQ 427
GTLT+N++++ + + + DL L L +
Sbjct: 381 GTLTKNKLSLHDP-YTVAGVDPE-------------------DLMLTACLAASRK----- 415
Query: 428 EKIQILKREVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPN 487
+ DA + A LK + +++K PF+ K V++ P
Sbjct: 416 --------KKGIDAIDKAFLKSLKYY-PRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQ 466
Query: 488 NEYLLVMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYAL 547
E + +KGAP +L ++D + + + + + G R LG
Sbjct: 467 GERITCVKGAPLFVLKTV------EEDHPIPEEVDQAYKNKVAEFATRGFRSLGV----- 515
Query: 548 PPAKFPAGFELKSDPPNFPLTGLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDH 607
A + LG+M +DPPR V + ++ G+ + M+TGD
Sbjct: 516 ------ARKRGEGS--------WEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDA 561
Query: 608 PVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLEN 667
A+ ++ +G+ + DM ++ +
Sbjct: 562 VGIARETSRQLGL----------------------GTNIYNAERLGLGGGGDMPGSEVYD 599
Query: 668 VLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSD 727
+ FA P K ++VE Q+ G +VA+TGDGVND+P+LKKAD GIA+ SD
Sbjct: 600 FVEAAD--GFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE-GSSD 656
Query: 728 VSKQTADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIGIPL 787
++ AD++ L +I+ ++ R IF + + Y +A ++ + FL + +
Sbjct: 657 AARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSI-HLEIFLGLWIAILNR 715
Query: 788 PLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLVTGKLLFVAYGQIGVI 847
L + ++ I + D+ +++AY+ A P KL ++ +GV+
Sbjct: 716 SLNIELVVFIAIFADV-ATLAIAYDNAPYSQTPVKWNLP--------KLWGMSVL-LGVV 765
Query: 848 EACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILEYTCHT 907
A + + + + + ++G
Sbjct: 766 LAVGTWITVTTM-----------------YAQGENGGIVQNFGN-------------MDE 795
Query: 908 AFFIAIVVVQWADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMDEILKT 967
F+ I + + + I + + +W L+ I + A + +
Sbjct: 796 VLFLQISLTENWLIFITRANGPFW--SSIPSWQLSGAIFLVDILATCFTIWG----WFEH 849
Query: 968 YPVRAEWWLPAVPFAIVIFIYDECRRFWLRT 998
+ F+ IF + L+
Sbjct: 850 SDTSIVAVVRIWIFSFGIFCIMGGVYYILQD 880
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 121 bits (307), Expect = 7e-31
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 54/190 (28%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
+ ++ D PRP + D + K ++ G+++I+++GD K ++K + I E
Sbjct: 126 EPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELN-IQE------- 177
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
++ SP K+ I+E
Sbjct: 178 ---------------------------------------------YYSNLSPEDKVRIIE 192
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
++ G V + GDGVND+ AL AD+ +AMG G D+SK AD+IL+ ++ +++ ++
Sbjct: 193 KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
Query: 751 EGRLIFDNLK 760
+ + + +
Sbjct: 252 NRKRLSNAIP 261
Score = 41.7 bits (99), Expect = 6e-04
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 333 LSLTAK-RMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEV 386
++L+ +M K ++K+ E + TI +KTGTLT VT D
Sbjct: 1 MALSLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQFIGDSLS 55
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 122 bits (308), Expect = 2e-28
Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 69/223 (30%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
+ + L+ + DP + + P+ + + + +GI ++M+TGD TA+A+A +G I +
Sbjct: 544 KTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG-IKK------- 595
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
V A P K IV
Sbjct: 596 ---------------------------------------------VVAEIMPEDKSRIVS 610
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
+ G IVA+ GDGVND+PAL KADIGIAMG TG+DV+ ++A + LL + I
Sbjct: 611 ELKDKGLIVAMAGDGVNDAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARR 669
Query: 751 EGRLIFDNLKKSIAYTLASNVPEITPFLMFI--VIGIPLPLGV 791
N+++++ F FI V+G+PL GV
Sbjct: 670 LSESTMSNIRQNL-------------FFAFIYNVLGVPLAAGV 699
Score = 62.2 bits (152), Expect = 7e-10
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 61/247 (24%)
Query: 160 VIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQARNAS 219
+ DG ++ + + GD++ V+ G++IP D + E F VD S +TGE P A+ AS
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEAS 288
Query: 220 EST---TIVLEAKNLAF-FSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAK 275
TI + +F V G +T++ RI + S + PI +
Sbjct: 289 AKVIGATIN---QTGSFVMKALHV-----------GSDTMLARIVQMVSDAQRSRAPIQR 334
Query: 276 EIHHFMHL---ISAW--------AIFLGVTFFFL--SFALGYAWIDAVIFLI-------G 315
L +S W A+ + + L AL Y I AV LI G
Sbjct: 335 -------LADTVSGWFVPAVILVAVLSFIVWALLGPQPALSYGLIAAVSVLIIACPCALG 387
Query: 316 IIVANVPEGLLATVTVCLSLTAK--RMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQN 373
LAT S+ + A ++K+ EA+E + +T+ DKTGTLT+
Sbjct: 388 ----------LATPM---SIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEG 434
Query: 374 RMTVTHL 380
+T +
Sbjct: 435 HPKLTRI 441
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 113 bits (285), Expect = 8e-28
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 55/190 (28%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
G++++ D RP +A++K ++ GI+ +M+TGD+ AK +A+ +G + +
Sbjct: 134 EVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELG-LDD------- 185
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
FA P +K V+
Sbjct: 186 ---------------------------------------------YFAEVLPHEKAEKVK 200
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q+ + A+ GDGVND+PAL +AD+GIA+G G+DV+ +TAD++L+ ++ + VE
Sbjct: 201 EVQQ-KYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVE 258
Query: 751 EGRLIFDNLK 760
R +
Sbjct: 259 LSRKTYSKFH 268
Score = 39.4 bits (93), Expect = 0.004
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 347 VKHLEAVETLGSTSTICSDKTGTLTQNRMTVT 378
++ +A E + DKTGTLT+ R VT
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVT 32
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 107 bits (269), Expect = 5e-27
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 438 MGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGA 497
+ + + A+L+ ++ +R +K EIPF+ + + + LV KGA
Sbjct: 32 LKNLLDTAVLEGTDEE--SARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLVCKGA 89
Query: 498 PERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFE 557
+ IL+ CS ++ + V LD +++ + + L G RV+ A
Sbjct: 90 LQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQGLRVVAV-----------ATKY 138
Query: 558 LKSDPPNFPL---TGLRFLGLMSMIDPPR 583
L + ++ + L G ++ +D
Sbjct: 139 LPAREGDYQRADESDLILEGYIAFLDHHH 167
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 110 bits (278), Expect = 7e-27
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 55/190 (28%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
R G++++ D + + AV + + GI+V M+TGD+ +A+AI++ + +
Sbjct: 153 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-LDL------- 204
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
V A P QK V+
Sbjct: 205 ---------------------------------------------VIAEVLPHQKSEEVK 219
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++ D++L+ D+ +V ++
Sbjct: 220 KLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQ 277
Query: 751 EGRLIFDNLK 760
R +K
Sbjct: 278 LSRKTMSKIK 287
Score = 40.2 bits (95), Expect = 0.002
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 347 VKHLEAVETLGSTSTICSDKTGTLTQNRMTVT 378
+K+ +A+E + + DKTGTLT+ + VT
Sbjct: 20 IKNADALEVAEKVTAVIFDKTGTLTKGKPEVT 51
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 115 bits (290), Expect = 1e-26
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 70/223 (31%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
R G++++ D + + AV + + GI+V M+TGD+ +A+AI++ + +
Sbjct: 447 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-LDL------- 498
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
V A P QK V+
Sbjct: 499 ---------------------------------------------VIAEVLPHQKSEEVK 513
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++ D++L+ D+ +V ++
Sbjct: 514 KLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQ 571
Query: 751 EGRLIFDNLKKSIAYTLASNVPEITPFLMFI--VIGIPLPLGV 791
R +K++I F I VI IP G+
Sbjct: 572 LSRKTMSKIKQNI-------------FWALIYNVILIPAAAGL 601
Score = 69.1 bits (170), Expect = 5e-12
Identities = 61/241 (25%), Positives = 99/241 (41%), Gaps = 40/241 (16%)
Query: 155 PQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEAEPQ 214
+ A VIRDG++ + E+ GD+V V+ G++IP D ++E + VD S ++GE P
Sbjct: 132 AKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPV 190
Query: 215 ARNASESTTIVLEA---KNLAF-FSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGD 270
++ + V A V G T++ +I L
Sbjct: 191 LKSKGDE---VFGATINNTGVLKIRATRV-----------GGETLLAQIVKLVEDAMGSK 236
Query: 271 TPIAKEIHHFMHLISAW--------AIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVP 322
PI + + A+ AI F + F + A LI ++V P
Sbjct: 237 PPIQR----LADKVVAYFIPTVLLVAI---SAFIYWYFIAHAPLLFAFTTLIAVLVVACP 289
Query: 323 EGL-LATVTVCLSLTAK--RMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTH 379
LAT T +LT + A ++K+ +A+E + + DKTGTLT+ + VT
Sbjct: 290 CAFGLATPT---ALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTD 346
Query: 380 L 380
L
Sbjct: 347 L 347
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 112 bits (284), Expect = 1e-25
Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 70/223 (31%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
R G++++ D + + AV + + GI+V M+TGD+ +A+AI++ + +
Sbjct: 525 RVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELN-LDL------- 576
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
V A P QK V+
Sbjct: 577 ---------------------------------------------VIAEVLPHQKSEEVK 591
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVE 750
Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++ D++L+ D+ +V ++
Sbjct: 592 KLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQ 649
Query: 751 EGRLIFDNLKKSIAYTLASNVPEITPFLMFI--VIGIPLPLGV 791
R +K++I F I VI IP G+
Sbjct: 650 LSRKTMSKIKQNI-------------FWALIYNVILIPAAAGL 679
Score = 72.2 bits (178), Expect = 5e-13
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 46/247 (18%)
Query: 152 NMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEA 211
+ + A VIRDG++ + E+ GD+V V+ G++IP D ++E + VD S ++GE
Sbjct: 207 GLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEP 265
Query: 212 EPQARNASESTTIVLEA---KNLAF-FSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLE 267
P ++ + V A V G T++ +I L
Sbjct: 266 VPVLKSKGDE---VFGATINNTGVLKIRATRV-----------GGETLLAQIVKLVEDAM 311
Query: 268 SGDTPIAKEIHHFMHL---ISAW--------AIFLGVTFFFLSFALGYAWIDAVIFLIGI 316
PI + L + A+ AI F + F + A LI +
Sbjct: 312 GSKPPIQR-------LADKVVAYFIPTVLLVAI---SAFIYWYFIAHAPLLFAFTTLIAV 361
Query: 317 IVANVPEGL-LATVTVCLSLTAK--RMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQN 373
+V P LAT T +LT + A ++K+ +A+E + + DKTGTLT+
Sbjct: 362 LVVACPCAFGLATPT---ALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKG 418
Query: 374 RMTVTHL 380
+ VT L
Sbjct: 419 KPEVTDL 425
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.0 bits (160), Expect = 5e-11
Identities = 94/656 (14%), Positives = 180/656 (27%), Gaps = 181/656 (27%)
Query: 379 HLSFDKEVFEVDY-FKDPTGLIEK--VRNMSSYKDLTLAGSLCNRAEF-----TPNQEKI 430
H D E E Y +KD + E V N + S+ ++ E + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 431 QILKREVMGDASEAAILKFSELAIGDVVEF-------RNRHKKALEIPFNST-------- 475
+ + E + KF E + +F R + +
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 476 ---DKYQVS-----------IHIMPNNEYLLV--MKGAPERIL--DRCSTMKQGDKDVE- 516
KY VS + + + +L+ + G+ + + D C V+
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL-----SYKVQC 178
Query: 517 --------LDAKNRHEVEEILEQLGN-YGERVLGFCDYALPPAKFPAGFELKSDPPNFPL 567
L+ KN + E +LE L + + + +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA------ 232
Query: 568 TGLRFLGLMSMIDPPRPA---VPDAVA----------KCRSAGIRVIMVTGDHPVTAKAI 614
LR L + P V V C ++++ T VT
Sbjct: 233 -ELRRL----LKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDFLS 282
Query: 615 AKAVGIIS--------EGSETLEDIAKRRRVPVSSLDPRESTTI------VIQGSILRDM 660
A IS E + K L PRE T +I +RD
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSII-AESIRDG 340
Query: 661 TTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVND-SPALKKA---D 716
+N + + + I+E +N PA +
Sbjct: 341 -LATWDNWKHVNCD---------KLTTIIESS-------------LNVLEPAEYRKMFDR 377
Query: 717 IGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNL-KKSIAYTLASNVPEIT 775
+ + + + +I D + ++ + L K S+ + E T
Sbjct: 378 LSVFP--PSAHIPTILLSLIWFDVIK-------SDVMVVVNKLHKYSL---VEKQPKEST 425
Query: 776 PFLMFIVIGIPLPLGVVAIL---CIDLGTDMWPAISLAYEKAESDIMRRHPRNPVTDKLV 832
+ I + + + L L +D Y I + + + +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVD-----------HYN-----IPKTFDSDDLIPPYL 469
Query: 833 TGKLL-FVAY--GQIGVIEACAGFFSYFVIMAQN-GWMPDKLIGIRARWESCA--INDLE 886
+ + I E F F+ + ++ K+ W + +N L+
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 887 D--SYGQEWTYASRKILEYTCHTAFFIAIV--VVQWADLLICKTRYNSLVHQGMNN 938
Y Y +Y AI+ + + + LIC ++Y L+ +
Sbjct: 526 QLKFYKP---YICDNDPKY---ERLVNAILDFLPKIEENLIC-SKYTDLLRIALMA 574
Score = 51.0 bits (121), Expect = 2e-06
Identities = 94/625 (15%), Positives = 188/625 (30%), Gaps = 194/625 (31%)
Query: 14 HHKSSSKLDNLKKEIELDDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAK 73
HH +D E +H+ KD+ + ++ A F +D +
Sbjct: 5 HH-----MD-----FETGEHQYQYKDILSVFE--------DAFVDNFDCKDVQDMPKSIL 46
Query: 74 KTPAW--VILLKHLFEGFSVLLWT------GAVLCFIAYLIEFHISEDASKDNL-WLGIV 124
+I+ K G L WT V F+ E+ + N +L
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV---------EEVLRINYKFLMSP 97
Query: 125 LVTVCI----ITGIFSY-----------------SQEAKSARIMDSFKNMVPQYANVIRD 163
+ T +T ++ S+ ++ + + P NV+ D
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLID 156
Query: 164 GQK---KTILSSELVRGDVVDVKFGDRI----------PADI-RIIESHGFKVDNSSLTG 209
G KT ++ ++ V K +I P + +++ +++D + T
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTS 215
Query: 210 EAEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNT--------------- 254
++ + +I E + L S + +++L N
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRL-LKS----KPYENCLLVL--LNVQNAKAWNAFNLSCKI 268
Query: 255 -VMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFL 313
+ R +T L + T HH M L L L +
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKY------------- 310
Query: 314 IGIIVANVPEGLLATVTVCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQN 373
+ ++P +L T LS+ A+ + + + V DK T+ +
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC---------DKLTTIIE- 360
Query: 374 RMTVTHLSFD--KEVFE---VDYFKD----PTGLIEKV-RNMSSYKDLTLAGSLCNR--A 421
++ L +++F+ V F PT L+ + ++ + + L
Sbjct: 361 -SSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 422 EFTPNQEKIQI------LKREVMGDASEAAILKFSELAIGDVVEFRNRHKKAL--EIPFN 473
E P + I I LK ++ + + + V+ N K ++
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI----------VDHYNIPKTFDSDDLIPP 467
Query: 474 STDKYQVSIHIMPNNEYLLVMKGAPERILDRCSTMKQGDKDVE----------LDAKNRH 523
D+Y S HI + L ++ ++ L+ K RH
Sbjct: 468 YLDQYFYS-HIG----HHL-------------KNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 524 E---------VEEILEQLGNYGERV 539
+ + L+QL Y +
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYI 534
Score = 44.5 bits (104), Expect = 2e-04
Identities = 53/423 (12%), Positives = 116/423 (27%), Gaps = 130/423 (30%)
Query: 628 LEDIAKRRRVP-------VSSLDPRESTT-IVIQGSILRDMTTEQLENVL---RTHREIV 676
+ I +R P + D + + + ++ R +L L R + ++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 677 FARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGI---AMGITGSDVSKQTA 733
+ V G G V D K D I + + +
Sbjct: 155 ---------IDGVLGS---GKTW-VALDVCLSYKVQCKMDFKIFWLNLK------NCNSP 195
Query: 734 DMIL---------LDDNFASIVTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIG 784
+ +L +D N+ S +L +++ + L S
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-------------- 241
Query: 785 IPLPLGVVAILCIDLGTDMWPAISLAYEKAESDIMRRHPRNPVT--DKLVTGKLLFVAYG 842
P +L + ++ A + I+ +T K VT L
Sbjct: 242 -PYE---NCLLVLL---NVQNAKAWNAFNLSCKIL-------LTTRFKQVTDFLSAATTT 287
Query: 843 QIGVIEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAINDLEDSYGQEWTYASRKILE 902
I + PD++ + ++ C DL R++L
Sbjct: 288 HISLDHHSMTL------------TPDEVKSLLLKYLDCRPQDL-----------PREVL- 323
Query: 903 YTCHTAFFIAIVVVQWADLLICKTRYNSLVHQGMNNWVLNFGIVFETVAACIVSYCPGMD 962
T + ++I+ + +++ H +N L + + + P
Sbjct: 324 -TTN-PRRLSII---AESIRDGLATWDNWKH--VNCDKLT-----TIIESSLNVLEP--A 369
Query: 963 EILKTY----------PVRAE-----WWLPAVPFAIVIFIYDECRRFWLRTHPNGWVERE 1007
E K + + W+ V + V+ + ++ ++ L +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWF--DVIKSDVMVVVNKLHKYSL---VEKQPKES 424
Query: 1008 TYY 1010
T
Sbjct: 425 TIS 427
Score = 43.3 bits (101), Expect = 5e-04
Identities = 50/367 (13%), Positives = 103/367 (28%), Gaps = 92/367 (25%)
Query: 371 TQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLT-----------LAGSLCN 419
++R+ + F K + V + L + + + K++ +A +C
Sbjct: 115 QRDRLYNDNQVFAK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 420 RAEFTPNQE-KIQILKREVMG--DASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTD 476
+ + KI L + ++ E + +L + +R + I
Sbjct: 173 SYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 477 KYQVSIHIMPNNEY---LLVMKG-APERILD----RCST-MKQGDKDV--ELDAKNRHEV 525
++ + Y LLV+ + + C + K V L A +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 526 EEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPP----NFPLTGLRFLGLMSMI-- 579
+ + V K+ + P P +S+I
Sbjct: 290 SLDHHSMTLTPDEVKSLL------LKY-LDCRPQDLPREVLTTNPR-------RLSIIAE 335
Query: 580 ---DPP------RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEG------ 624
D + D + + + V+ P + + + +
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVL-----EPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 625 ----------SETLEDIAK--RRRVPVSSL---DPRESTTIVIQGSILRDMTTEQLENVL 669
+ + + SL P+EST I I I ++ +LEN
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKEST-ISIPS-IYLELK-VKLENEY 443
Query: 670 RTHREIV 676
HR IV
Sbjct: 444 ALHRSIV 450
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 5e-10
Identities = 79/538 (14%), Positives = 158/538 (29%), Gaps = 183/538 (34%)
Query: 356 LGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDL-TLA 414
LG S++ V +L + FE Y + D+ LA
Sbjct: 65 LGYVSSLVEPSKVGQFDQ---VLNLCLTE--FENCYLEG--------------NDIHALA 105
Query: 415 GSLCNRAEFTPNQEKIQILKREVMGDASEAAILK--FSELAIGDVVEFRNRHKKALEIPF 472
L + ++K ++K + + F + AL F
Sbjct: 106 AKL-------LQENDTTLVKT--------KELIKNYITARIMAKR-PFDKKSNSAL---F 146
Query: 473 NSTDKYQVSIHIM-----PNNEYL--LVM-----KGAPERILDRCSTMKQGDKDVELDAK 520
+ + + + ++Y L ++ + EL +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS-----EL-IR 200
Query: 521 NRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGL---------- 570
+ E++ Q G +L + + P+ P L S P + PL G+
Sbjct: 201 TTLDAEKVFTQ----GLNILEWLEN---PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 571 RFLGLMSMIDPP--RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGS-ET 627
+ LG P R + A S G+ VTA AIA+ S E+
Sbjct: 254 KLLGF----TPGELRSYLKGATG--HSQGL----------VTAVAIAET------DSWES 291
Query: 628 LEDIAKR-------------RRVPVSSLDPRESTTIVIQG--------SILRDMTTEQLE 666
++ P +SL P + SI ++T EQ++
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSI-SNLTQEQVQ 350
Query: 667 NVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGS 726
+ + + +++ I ++ VN + ++G
Sbjct: 351 DYVNKTN----SHLPAGKQVEI-----------SL----VN-GAK--------NLVVSGP 382
Query: 727 DVSKQTADMILLDDNFASI--VTGVEEGRLIFDNLKKSIAYTLASNVPEITPFLMFIVIG 784
+ L+ +G+++ R+ F K + FL +
Sbjct: 383 -----PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR----------FL---PVA 424
Query: 785 IPL--PL--GVVAILCIDLGTD--MWPAISLA---YEKAE-SDIMRRHPRNPVTDKLV 832
P L ++ DL + + A + Y+ + SD+ R +++++V
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL--RVLSGSISERIV 480
Score = 58.1 bits (140), Expect = 1e-08
Identities = 96/545 (17%), Positives = 164/545 (30%), Gaps = 208/545 (38%)
Query: 547 LPPAKFPAGFELK----------------SDPPNFP--LTGLRFLG-LMSMIDPPRPAVP 587
+P A F +L+ D P P L G +FLG + S+++P +
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG-KFLGYVSSLVEPSKVGQF 80
Query: 588 DAVAKCRSAGI----RVIMVTGD-HPVTAKAIAKAVGIISEGSETLED------IAKR-- 634
D V + + D H + AK + + + + E +++ +AKR
Sbjct: 81 DQVLN---LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 635 RRVPVSSL----DPRESTTIVI---QGSI------LRDM--------------TTEQLEN 667
+ S+L + + I QG+ LRD+ + E L
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 668 VLRTHREI--VFAR---------------------TSP--------TQKLHIVEGCQRLG 696
++RT + VF + + P Q H V + LG
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 697 --------AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVT- 747
+ TG + A+ I +D S ++ + +T
Sbjct: 258 FTPGELRSYLKGATGHS---------QGLVTAVAIAETD-SWES-----FFVSVRKAITV 302
Query: 748 ----GVEEGRLIFDNLK---KSIAYTLASNVPEITPFLMFIVIGIP-------------- 786
GV + N + +L +N E P M + +
Sbjct: 303 LFFIGVR-CYEAYPNTSLPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Query: 787 LPLG--------------VVAILCIDLGTDMWPAISLAY--------EKAESDIMRRHPR 824
LP G VV+ G P SL Y KA S + + R
Sbjct: 360 LPAGKQVEISLVNGAKNLVVS------G----PPQSL-YGLNLTLRKAKAPSGLDQS--R 406
Query: 825 NPVTDKLVTGKLLFVA-YGQIGVIEACAGFFSYFVIMAQNGWMPDKLIGIRARWESCAIN 883
P +++ KL F + + + F S+ ++ A + D L+ + + I
Sbjct: 407 IPFSER----KLKFSNRFLPVA-----SPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQ 456
Query: 884 ----DLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWADLLICKTRYNSLVHQGMNNW 939
D D G + S I E I + V+W K
Sbjct: 457 IPVYDTFD--GSDLRVLSGSISERIVDC---IIRLPVKWETTTQFKA-----------TH 500
Query: 940 VLNFG 944
+L+FG
Sbjct: 501 ILDFG 505
Score = 42.3 bits (99), Expect = 0.001
Identities = 61/330 (18%), Positives = 100/330 (30%), Gaps = 85/330 (25%)
Query: 35 LPLKDL--CARYQTSAEK-GLTSAQAKQFLLRDGPNSLTPAKK----------TPAWVIL 81
PL + A Y +A+ G T + LR T + T +W
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGE-----LRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 82 LKHLFEGFSVLLWTGAVLCFIAY---LIEFHISEDASKDN-------LWL-GIVLVTV-C 129
+ + +VL + G C+ AY + I ED+ ++N L + + V
Sbjct: 293 FVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 130 IITGIFSYSQEAKSARI--MDSFKNMV----PQ--YANVIRDGQKKTILSSELVRGDVVD 181
+ S+ K I ++ KN+V PQ Y L+ L +
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-----------LNLTLRKAKAPS 400
Query: 182 VKFGDRIPADIRIIE-SHGF-KVD---NSSLTGEAEPQARNASESTTIVLEAKNLAFFST 236
RIP R ++ S+ F V +S L A + AK++
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--- 457
Query: 237 NAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAW--AIFLGVT 294
V T G + ++ RI D I + W T
Sbjct: 458 -PVYDTFDGSDLRVLSGSISERIV---------DCIIRLPVK--------WETTTQFKAT 499
Query: 295 FFFLSFALGYAWIDAVIFLIGIIVANVPEG 324
L F G +G++ +G
Sbjct: 500 -HILDFGPG------GASGLGVLTHRNKDG 522
Score = 34.6 bits (79), Expect = 0.20
Identities = 83/508 (16%), Positives = 151/508 (29%), Gaps = 180/508 (35%)
Query: 5 AVPGANKPEHHKSSSKLDNLKKEIELDDHKL------------PLKDLCARYQTSAE--K 50
A A +P KS+S L + + + +L ++L YQT
Sbjct: 129 ARIMAKRPFDKKSNSAL--FRA-VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 51 GLTSAQAKQF--LLRDGPNSLTPAKKTPAWVILLKHLFEGFSVLLW------TGAVLCFI 102
L A+ L+R ++ K +G ++L W T
Sbjct: 186 DLIKFSAETLSELIRTTLDA-------------EKVFTQGLNILEWLENPSNTPDK---- 228
Query: 103 AYLIEFHISEDASKDNLWLGIVLV------TVC------------IITGIFSYSQEAKSA 144
YL+ IS I ++ + G +SQ +A
Sbjct: 229 DYLLSIPIS--------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 145 RIM---DSFKNMVPQYANVIR-------DGQK---KTILSSELVRGDVVDVKFGDRIPA- 190
+ DS+++ I + T L ++ D ++ G +P+
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEG--VPSP 337
Query: 191 -------DIRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLEAKNLAFFSTNAVEGTA 243
++ + K NS L P + I L N A
Sbjct: 338 MLSISNLTQEQVQDYVNKT-NSHL-----PAGKQVE----ISL--VN-----------GA 374
Query: 244 KGIVI------LCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFLGVT--F 295
K +V+ L G N + + SGL+ P ++ F + FL V F
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNR------FLPVASPF 427
Query: 296 F--FLSFALGYAWIDAVIFLIGIIVANVPEGLLATVTVCLSLTAK--RMASKNCVVKHLE 351
L A D L+ V+ + + + V + R+ S + + ++
Sbjct: 428 HSHLLVPASDLINKD----LVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVD 481
Query: 352 AVETLGSTSTICS-----DKTGTLTQNRMTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMS 406
I + T + TH+ +D+ P G + ++
Sbjct: 482 C---------IIRLPVKWETT-----TQFKATHI--------LDF--GP-GGASGLGVLT 516
Query: 407 SY-KDLT-----LAGSLCNRAEFTPNQE 428
KD T +AG+L + P+ +
Sbjct: 517 HRNKDGTGVRVIVAGTL----DINPDDD 540
Score = 32.7 bits (74), Expect = 0.76
Identities = 54/309 (17%), Positives = 100/309 (32%), Gaps = 106/309 (34%)
Query: 138 SQE----------AKSARI----MDSFKNMVPQY----ANVIRDGQK-KTIL----SSEL 174
SQE +K+A+ D+ Y +++ + TI +
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNH--FKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 175 VRGDVVDVKFGDRIPADIRIIESHGFKVDN---SSLTGEAEPQARNASESTTIVLEAKNL 231
+R + + F D ++ FK N +S T +E +A++ T L
Sbjct: 1684 IRENYSAMIF--ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 232 AFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGDTPIAKEIHHFMHLISAWAIFL 291
A F ++ +KG++ + AG S L G E +A A
Sbjct: 1742 AAFE--DLK--SKGLIP---ADATF---AGH-S-L--G------EY-------AALASLA 1774
Query: 292 GVTFFFLSFALGYAWIDAV--IFLIGIIVAN-VPE--------GLLATV--TVCLSLTA- 337
V +S V +F G+ + VP G++A V S +
Sbjct: 1775 DV----MSIE------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 338 ------KRMASK----------NC----VV--KHLEAVETLGSTSTICSDKTGTLTQNRM 375
+R+ + N V L A++T+ T+ + K + +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV--TNVLNFIKLQKIDIIEL 1882
Query: 376 TVTHLSFDK 384
+ LS ++
Sbjct: 1883 QKS-LSLEE 1890
Score = 31.2 bits (70), Expect = 2.6
Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 107/259 (41%)
Query: 45 QTSAEKGL------TSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFE--GFSVLLWTG 96
Q S E+G+ TS A+ R A H + GFS+L
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNR--------ADN---------HFKDTYGFSIL---- 1662
Query: 97 AVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSFKNMVPQ 156
I + + +T F K RI +++ M+
Sbjct: 1663 ------------DIVINNPVN-------------LTIHFG---GEKGKRIRENYSAMI-- 1692
Query: 157 YANVIRDGQKKTILSSELVRGDVVDVKF-GDRI---------PADI--------RIIESH 198
+ ++ DG+ KT + + F ++ PA + ++S
Sbjct: 1693 FETIV-DGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA-LTLMEKAAFEDLKSK 1750
Query: 199 GFKVDNS-----SLTGE--AEPQARNASESTTIVLE-AKNLAF----FSTNAVEGTAKGI 246
G ++ SL GE A AS + + +E + F AV G
Sbjct: 1751 GLIPADATFAGHSL-GEYAA-----LASLADVMSIESLVEVVFYRGMTMQVAVPRDELG- 1803
Query: 247 VILCGDNTVM-----GRIA 260
N M GR+A
Sbjct: 1804 ----RSNYGMIAINPGRVA 1818
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 55.9 bits (136), Expect = 1e-09
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 152 NMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGEA 211
+ + A VIRDG++ + E+ GD+V V+ G++IP D ++E + VD S ++GE
Sbjct: 8 GLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEP 66
Query: 212 EP 213
P
Sbjct: 67 VP 68
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 49.4 bits (119), Expect = 3e-07
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 152 NMVPQYANVIRDGQKKTILS------SELVRGDVVDVKFGDRIPADIRIIESHGFKVDNS 205
++ A ++ +LS + RGD++ V G + P D R+IE H VD S
Sbjct: 14 SLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDES 72
Query: 206 SLTGEAEP 213
+TGEA P
Sbjct: 73 LITGEAMP 80
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 49.0 bits (118), Expect = 2e-06
Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 45/197 (22%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG----IISE--------------GS 625
+A+ + S GI +++VTG+ A+A + +G +++E S
Sbjct: 23 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFLAS 82
Query: 626 ETLEDIAK---RRRVPVSSLD---PRESTTIVIQGSILRDMTTEQLENVLRTHREIVFAR 679
E I R+R P + P +VI + E + ++ + A
Sbjct: 83 MDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMR---ETINVETVREIINELNLNLVAV 139
Query: 680 TSPTQKLHIV-------EG----CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGIT 724
S +H+ G + LG + V GDG ND A K +A+
Sbjct: 140 DSGFA-IHVKKPWINKGSGIEKASEFLGIKPKEVAHV-GDGENDLDAFKVVGYKVAVA-Q 196
Query: 725 GSDVSKQTADMILLDDN 741
+ K+ AD + +
Sbjct: 197 APKILKENADYVTKKEY 213
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 47.1 bits (113), Expect = 7e-06
Identities = 26/197 (13%), Positives = 53/197 (26%), Gaps = 47/197 (23%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG-----------------------I 620
+++ G+ V +++G+ A+ +G
Sbjct: 25 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFF 84
Query: 621 ISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVF-AR 679
+EG+ + +R S L R D+ E ++ V + F
Sbjct: 85 SNEGTNKFLEEMSKRTSMRSILTNRWREAS-----TGFDIDPEDVDYVRKEAESRGFVIF 139
Query: 680 TSPTQKLHIV-------EG----CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGIT 724
S H++ + I+ + GD ND P +
Sbjct: 140 YSGYS-WHLMNRGEDKAFAVNKLKEMYSLEYDEILVI-GDSNNDMPMFQLPVRKACPA-N 196
Query: 725 GSDVSKQTADMILLDDN 741
+D K +D +
Sbjct: 197 ATDNIKAVSDFVSDYSY 213
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 41.8 bits (99), Expect = 7e-04
Identities = 32/174 (18%), Positives = 51/174 (29%), Gaps = 36/174 (20%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSS 641
P ++ R V + + + ++ E + I + PV
Sbjct: 93 PAQDFRKSMELAREFDFAVALELNEGVFVNR--------LTPTVEQIAGIVEHPVPPVVD 144
Query: 642 LDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPT---------------QKL 686
++ Q D E + V+ + R P
Sbjct: 145 IEEMFERKECCQLCFYFDE--EAEQKVMPLLSGLSATRWHPLFADVNVAGTSKATGLSLF 202
Query: 687 HIVEGCQRLGA----IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
I+A GDG ND P LK A IG+AMG S+ + AD +
Sbjct: 203 -----ADYYRVKVSEIMAC-GDGGNDIPMLKAAGIGVAMGN-ASEKVQSVADFV 249
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 41.3 bits (98), Expect = 8e-04
Identities = 38/223 (17%), Positives = 70/223 (31%), Gaps = 77/223 (34%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI---IS------------------ 622
+ +AV + + +G+ V + TG P + + K +GI +S
Sbjct: 23 LSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGIDSFVSFNGQYVVFEGNVLYKQPL 82
Query: 623 --EGSETLEDIAKRRRVPVSSLDP--------------RESTTIVIQGSILRDM------ 660
E L + A + P+ +D ++ + +
Sbjct: 83 RREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKD 142
Query: 661 --------TTEQLENVLRTHREIVFARTSPT---------------QKLHIVEGCQRLGA 697
E+ E +R + E F R + + ++LG
Sbjct: 143 IYQALLFCRAEEEEPYVRNYPEFRFVRWHDVSTDVLPAGGSKAEGIRMM-----IEKLGI 197
Query: 698 ----IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+ A GDG+ND L G+AMG + K+ AD +
Sbjct: 198 DKKDVYAF-GDGLNDIEMLSFVGTGVAMGN-AHEEVKRVADFV 238
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 40.2 bits (94), Expect = 0.004
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 20/116 (17%)
Query: 171 SSELVR-GDVVDVKFGDRIPAD--IRIIESHGFKVDNSSLTGEAEPQARNASESTTIVLE 227
+ E V DV K+ I IR+IE F N P+ + +++E
Sbjct: 881 TKEPVDDKDVKA-KYETSILEHSGIRLIEPELFNGYN--------PEKK--EMIQEVIVE 929
Query: 228 AKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSG---LESGDTPIAKEIHHF 280
++L F + + TA+ GD + I L G T + F
Sbjct: 930 -EDLEPFEAS--KETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRF 982
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 38.7 bits (91), Expect = 0.005
Identities = 36/174 (20%), Positives = 57/174 (32%), Gaps = 36/174 (20%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSS 641
P+ V A C G+ I V + + + D +P S
Sbjct: 86 PQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVK-------KIFYDFLHVNVIPTVS 138
Query: 642 LDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPT---------------QKL 686
+ S VIQ + +T E+ + VL + R P ++
Sbjct: 139 FE-EASNKEVIQMTPF--ITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEI 195
Query: 687 HIVEGCQRLGA----IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+ G ++ GDG ND L+ A IG+AMG + K AD +
Sbjct: 196 -----IRHFGIKLEETMSF-GDGGNDISMLRHAAIGVAMGQ-AKEDVKAAADYV 242
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 37.0 bits (86), Expect = 0.019
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 698 IVAVTGDGVNDSPALKKADIGIA 720
I+ + GD V D A K +D+ A
Sbjct: 166 IIMI-GDSVTDVEAAKLSDLCFA 187
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 36.8 bits (86), Expect = 0.027
Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 20/173 (11%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRR-RVPVS 640
+ + + V + + + + + + + +++ T I K+ + ++
Sbjct: 85 NQRLIKEVVCLLKKREVAFSIESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKIT 144
Query: 641 SLDPRE--STTIVIQGSILRDMTT-EQLENVLRTHREIVFARTSP---------TQKLHI 688
+ E + + + + + ++++++L+ E+ S K
Sbjct: 145 YENNIEEYKSQDIHKICLWSNEKVFDEVKDILQDKMELAQRDISSQYYEIIQKDFHKGKA 204
Query: 689 VEG-CQRLGA----IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
++ +RLG + GDG ND + +D+ IAM K A I
Sbjct: 205 IKRLQERLGVTQKETICF-GDGQNDIVMFQASDVTIAMK-NSHQQLKDIATSI 255
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 36.8 bits (86), Expect = 0.027
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVT 747
+ ++ V GD ND L A+ +D +K A +L + V
Sbjct: 233 LKHYNISNDQVLVV-GDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVA 290
Query: 748 GVEEGRLIFDNLKK 761
+ + ++ +LKK
Sbjct: 291 YLLK-KVF--DLKK 301
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 35.9 bits (83), Expect = 0.055
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 46/147 (31%)
Query: 581 PPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVS 640
P + + ++ G + +++G + + + + S T+E
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIR--------- 229
Query: 641 SLDPRESTTIVIQGSILRDMTTEQLENVL--RTHREIVFARTSPTQKLHIVEG-CQRLG- 696
+NVL I+ A K + RL
Sbjct: 230 -------------------------DNVLTDNITLPIMNAAN----KKQTLVDLAARLNI 260
Query: 697 ---AIVAVTGDGVNDSPALKKADIGIA 720
I+A GDG ND P L+ A GIA
Sbjct: 261 ATENIIAC-GDGANDLPMLEHAGTGIA 286
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 35.9 bits (83), Expect = 0.057
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEE 751
GD ND L+ G + + +K ++I + I +++
Sbjct: 230 AIAFGDSGNDVRMLQTVGNGYLLK-NATQEAKNLHNLITDSEYSKGITNTLKK 281
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 35.3 bits (82), Expect = 0.061
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 695 LGAIVAVTGDGVNDSPALKKADIGIAMG 722
I+ + GDG D A AD I G
Sbjct: 171 FKKIIMI-GDGATDMEACPPADAFIGFG 197
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 35.6 bits (83), Expect = 0.067
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+ +G ++A+ GDG ND +K A +G+AMG + K+ AD I
Sbjct: 206 LENIGMTREEVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYI 252
Score = 28.7 bits (65), Expect = 8.3
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGS 625
+ + + + GIR+++ +G +A + + G
Sbjct: 25 SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGG 66
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 35.6 bits (83), Expect = 0.069
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDN 741
LG I+A+ GD ND ++ A +G+A+ K+ A+ + +
Sbjct: 207 ADVLGIKPEEIMAI-GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFVTKSNL 258
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 35.2 bits (82), Expect = 0.073
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+LG ++ + GD ND +K A +G+AMG D K+ A +
Sbjct: 206 VDQLGLTADDVMTL-GDQGNDLTMIKYAGLGVAMG-NAIDEVKEAAQAV 252
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 34.5 bits (80), Expect = 0.10
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 682 PTQKLHIVEGCQRLGA-IVAVTGDGVNDSPALKKADIGIA 720
K V + L ++A GD ND+ L +A GI
Sbjct: 131 KDPKRQSVIAFKSLYYRVIAA-GDSYNDTTMLSEAHAGIL 169
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 34.8 bits (81), Expect = 0.10
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+R+ IV GD ND ++A + +AM + K+ +D++
Sbjct: 199 RERMNWKKEEIVVF-GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIV 245
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 34.5 bits (80), Expect = 0.12
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIA 720
+ L + V GDG ND K A I IA
Sbjct: 151 QRLLNISKTNTLVV-GDGANDLSMFKHAHIKIA 182
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 34.6 bits (80), Expect = 0.13
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
++L AV GD +ND L+ A G+AMG + K AD +
Sbjct: 225 AKQLNIPLEETAAV-GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAV 271
Score = 29.9 bits (68), Expect = 3.5
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
+A+ + + GI V++ TG +I + +GI
Sbjct: 24 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 60
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 34.3 bits (79), Expect = 0.17
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIA 720
Q+ VAV GDG ND + A +G+A
Sbjct: 254 AQQYDVEIHNTVAV-GDGANDLVMMAAAGLGVA 285
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 33.7 bits (78), Expect = 0.18
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIA 720
+ G VAV GDG ND KKA + IA
Sbjct: 152 AKIEGINLEDTVAV-GDGANDISMFKKAGLKIA 183
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 34.1 bits (79), Expect = 0.20
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
LG +VA+ G +D P ++ A +G+AMG K+ AD +
Sbjct: 211 ASELGLSMDDVVAI-GHQYDDLPMIELAGLGVAMG-NAVPEIKRKADWV 257
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 33.5 bits (76), Expect = 0.26
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 698 IVAVTGDGVNDSPALKKADIGIAMG 722
+ + GDG ND+P L+ D + +
Sbjct: 211 TLGL-GDGPNDAPLLEVMDYAVIVK 234
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, tructural genomics;
1.80A {Alicyclobacillus acidocaldarius subsp}
Length = 242
Score = 33.6 bits (76), Expect = 0.27
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 30/139 (21%)
Query: 589 AVAKCRSAGIRVIMV-------TGDHPVTAKAIAKAVGII-------------SEGSETL 628
+ A R A IR I+V G PV A A GI+ +G +
Sbjct: 1 SNAMTREATIRQILVITDGCSNIGPDPVEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEA 60
Query: 629 EDIAKR-----RRVPVSSLDPREST-TIVIQGSILRDMTTEQLENVLRTHREIVFARTSP 682
IA R V + + T L+ + ++L V+ E P
Sbjct: 61 HSIADAGGGMCRIVQPADISATAQMMTHQTMQMTLQQVVNQELLAVMGKSTE----DLPP 116
Query: 683 TQKLHIVEGCQRLGAIVAV 701
+ +++ ++L VA+
Sbjct: 117 ADRARVMQVVEKLEDEVAL 135
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 33.4 bits (76), Expect = 0.29
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 703 GDGVNDSPALKKADIGIAMG 722
GD +ND P + D+ + +G
Sbjct: 201 GDSLNDLPLFRAVDLAVYVG 220
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 33.3 bits (75), Expect = 0.32
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 698 IVAVTGDGVNDSPALKKADIGIAMG 722
AV GD ND P + D +G
Sbjct: 199 SYAV-GDSYNDFPMFEVVDKVFIVG 222
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 33.5 bits (77), Expect = 0.36
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 28/108 (25%)
Query: 569 GLRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETL 628
G+R L L+S P + VA+ + G V + D V + V L
Sbjct: 555 GVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACD--VADRETLAKV---------L 603
Query: 629 EDIAKRRRVPVSSLDPRESTTIVIQGS-ILRD-----MTTEQLENVLR 670
I + T V+ + +L D +T E+L+ VLR
Sbjct: 604 ASIPDEHPL-----------TAVVHAAGVLDDGVSESLTVERLDQVLR 640
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 32.9 bits (75), Expect = 0.53
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIA 720
QR G VAV GDG ND L A +GIA
Sbjct: 332 AQRAGVPMAQTVAV-GDGANDIDMLAAAGLGIA 363
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 31.2 bits (71), Expect = 0.65
Identities = 6/49 (12%), Positives = 20/49 (40%)
Query: 572 FLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
+ G++ D + + +A + G+ ++++ D A + +
Sbjct: 9 YAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELET 57
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 31.6 bits (72), Expect = 1.0
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 583 RPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
D V +AG +VT + IA+A G+
Sbjct: 94 TVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV 131
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 31.6 bits (72), Expect = 1.1
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 567 LTGLRFLGLMSMIDPPRP----AVPDAVAKCRS---AGIRVIMVTGDHPVTAKAIAKAVG 619
L G LG P DA A + AG +++ + +
Sbjct: 177 LKGRNGLGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDI 236
Query: 620 IIS 622
I+
Sbjct: 237 IVK 239
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 31.4 bits (72), Expect = 1.3
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTAD 734
+ LG +A GDG+ND+ L A G M K
Sbjct: 218 AKMLGYTLSDCIAF-GDGMNDAEMLSMAGKGCIMA-NAHQRLKDLHP 262
Score = 29.4 bits (67), Expect = 6.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
P + + + GI + TG H + I +GI
Sbjct: 41 PYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGI 77
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 31.0 bits (71), Expect = 1.6
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 692 CQRLGAI----VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
R + V GD +ND L+ A I A+ A
Sbjct: 220 IDRFD-LLPDEVCCFGDNLNDIEMLQNAGISYAVS-NARQEVIAAAKHT 266
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 31.0 bits (71), Expect = 1.6
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 692 CQRLGAI----VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+R + V GD ND+ LK A AMG ++ KQ A
Sbjct: 200 LKRWD-LSPQNVVAIGDSGNDAEMLKMARYSFAMG-NAAENIKQIARYA 246
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 30.7 bits (70), Expect = 2.2
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 692 CQRLGAI----VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
+R + GDG ND LK A AM K A+
Sbjct: 237 LKRWN-FTSDHLMAFGDGGNDIEMLKLAKYSYAMA-NAPKNVKAAANYQ 283
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 29.9 bits (67), Expect = 2.6
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 581 PPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG 619
P +A+ R G+ + + +A V
Sbjct: 36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPVN 74
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 30.3 bits (69), Expect = 2.6
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
R + L+ P P V +AVA C+ G+ V + + + + +
Sbjct: 84 RAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDL 133
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein
structure initia structural genomics of pathogenic
protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP:
c.42.1.1
Length = 316
Score = 30.7 bits (70), Expect = 2.7
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 588 DAVAKCRSAGIRVIMVTGDHPVT---AKAIAKA----VGII 621
V + G ++ G + + +A+ +A VG+I
Sbjct: 103 SKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAFPGDVGVI 143
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 30.3 bits (68), Expect = 2.9
Identities = 9/41 (21%), Positives = 12/41 (29%)
Query: 581 PPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGII 621
P + K + GI+V TG P A
Sbjct: 111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQ 151
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 30.5 bits (68), Expect = 3.3
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIIS 622
P V + + AG + + TG + +G++
Sbjct: 216 PVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLP 256
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural
genomics; NMR {Methanothermobacterthermautotrophicus}
SCOP: d.115.1.1
Length = 208
Score = 29.8 bits (68), Expect = 3.3
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 571 RFL-GLMSMIDPPRPAVPDAV-AKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
R L G +++ +PD + GIRV D + + IA +
Sbjct: 90 RILPGPYTVVLERNELIPDVITGGSSRVGIRV----PDDEI-CRRIAARFPV 136
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 29.9 bits (68), Expect = 3.5
Identities = 8/55 (14%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 692 CQRLG----AIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNF 742
Q L + GD ND + + G+ + D ++
Sbjct: 171 QQHLAMEPSQTLVC-GDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga
maritima}
Length = 193
Score = 29.5 bits (66), Expect = 3.7
Identities = 13/65 (20%), Positives = 24/65 (36%)
Query: 594 RSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVSSLDPRESTTIVIQ 653
SAGI + G ++K I E + +I + ++V V + D + +
Sbjct: 77 ESAGIEPGLRVGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPL 136
Query: 654 GSILR 658
R
Sbjct: 137 DVFDR 141
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 29.4 bits (66), Expect = 4.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 578 MIDPPRPAVPDAVAKCRSAGIRVIMVT-GDHPVTAKAIAKAVGI 620
+IDP + D G+ I++T DH +AK IA
Sbjct: 37 LIDPVALSNHDWKHLESLGGVVWIVLTNSDHVRSAKEIADQTYT 80
>1fft_A Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane
protein, oxidoreductase; HET: HEM HEO; 3.50A
{Escherichia coli} SCOP: f.24.1.1
Length = 663
Score = 29.6 bits (67), Expect = 6.3
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 275 KEIHHFMHLISAWAIFLGVTFFFLSFALGY-AWIDAVIFLIGIIVA 319
+EIH M S I + FA+ + W A++ G+I+
Sbjct: 581 EEIH--MPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT 624
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 29.2 bits (66), Expect = 6.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 587 PDAVAKCRSAGIRVI-MVTGDHPVTAKAIAKAVG---IISEGSE 626
+ +A+ R AG + T P A+A+ A G +I++G E
Sbjct: 135 REVIARLRRAGTLTLVTAT--TPEEARAVEAA-GADAVIAQGVE 175
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET:
HEM; 2.40A {Pseudomonas aeruginosa}
Length = 283
Score = 28.8 bits (65), Expect = 8.2
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 587 PDAVAKCRSAGIRVIMVTGDHPVTA-----KAIAKAVGIISEGSETLEDIAKR 634
P + + AG+RV ++ + A K + +G+ D +R
Sbjct: 72 PPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVPQRAEAAELDYRQR 124
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 28.9 bits (65), Expect = 8.9
Identities = 11/105 (10%), Positives = 29/105 (27%), Gaps = 15/105 (14%)
Query: 522 RHEVEEILEQLGNYGERVLGFC--DYALPPAKFPAG--------FELKSDPPNFPLTGLR 571
R ++ ++ +G + P + F + D P + +
Sbjct: 181 RLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFAEQGDLPAWLSSRDT 240
Query: 572 -----FLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTA 611
+L L + + A+ V++ +G +
Sbjct: 241 ARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVS 285
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 28.7 bits (65), Expect = 9.9
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 173 ELVRGDVVDVKFGDRIPADIRII-----ESHGFKVDNS 205
ELV GD+ D + D++ A I ESH DNS
Sbjct: 57 ELVVGDIADAELVDKLAAKADAIVHYAAESH---NDNS 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,924,646
Number of extensions: 1026188
Number of successful extensions: 2798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2728
Number of HSP's successfully gapped: 125
Length of query: 1010
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 907
Effective length of database: 3,825,930
Effective search space: 3470118510
Effective search space used: 3470118510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.8 bits)