RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3624
(1010 letters)
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 179 bits (455), Expect = 5e-52
Identities = 98/212 (46%), Positives = 131/212 (61%), Gaps = 3/212 (1%)
Query: 375 MTVTHLSFDKEVFEVDYFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILK 434
MTV H+ FD ++ E D +D +G + ++ L+ LCNRA F QE I + K
Sbjct: 2 MTVAHMWFDNQIHEADTTEDQSGATFD-KRSPTWTALSRIAGLCNRAVFKAGQENISVSK 60
Query: 435 REVMGDASEAAILKFSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNN--EYLL 492
R+ GDASE+A+LK EL+ G V + R+R+ K EI FNST+KYQ+SIH +N ++L
Sbjct: 61 RDTAGDASESALLKCIELSCGSVRKMRDRNPKVAEISFNSTNKYQLSIHEREDNPQSHVL 120
Query: 493 VMKGAPERILDRCSTMKQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKF 552
VMKGAPERILDRCS++ K++ LD + + + +LG GERVLGFC LP KF
Sbjct: 121 VMKGAPERILDRCSSILVQGKEIPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKF 180
Query: 553 PAGFELKSDPPNFPLTGLRFLGLMSMIDPPRP 584
P GF+ +D NFP L F+GLMSMID
Sbjct: 181 PRGFKFDTDELNFPTEKLCFVGLMSMIDHHHH 212
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
transmembrane domain M {Rabbit (Oryctolagus cuniculus)
[TaxId: 9986]}
Length = 472
Score = 178 bits (452), Expect = 9e-49
Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 18/307 (5%)
Query: 698 IVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFD 757
+AV V P A I + + ++K+ A + S+ + GR I++
Sbjct: 182 KIAVAL-AVAAIPEGLPAVITTCLALGTRRMAKKNAIV-------RSLPSVETLGRAIYN 233
Query: 758 NLKKSIAYTLASNVPEITPFLMFIVIGIPLPLGVVAILCIDLGTDMWPAISLAYEKAESD 817
N+K+ I Y ++SNV E+ + +G+P L V +L ++L TD PA +L + + D
Sbjct: 234 NMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLD 293
Query: 818 IMRRHPRNPVTDKLVTGKLLFVAYGQIGVIEACA-GFFSYFVIMAQNGWMPDKLIGIRAR 876
IM R PR+P + L++G L F G + A G +++ + A++G G+
Sbjct: 294 IMDRPPRSP-KEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGP------GVTYH 346
Query: 877 WESCAINDLEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWADLLICKTRYNSLVHQGM 936
+ + ED E T +V ++ + L + SL+
Sbjct: 347 QLTHFMQCTEDHPHFEG-LDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPP 405
Query: 937 -NNWVLNFGIVFETVAACIVSYCPGMDEILKTYPVRAEWWLPAVPFAIVIFIYDECRRFW 995
N L I ++ Y + I K + WL + ++ + DE +F
Sbjct: 406 WVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFI 465
Query: 996 LRTHPNG 1002
R + G
Sbjct: 466 ARNYLEG 472
Score = 139 bits (350), Expect = 2e-35
Identities = 57/354 (16%), Positives = 100/354 (28%), Gaps = 103/354 (29%)
Query: 31 DDHKLPLKDLCARYQTSAEKGLTSAQAKQFLLRDGPNSLTPAKKTPAWVILLKHLFEGFS 90
H ++ A + S GLT Q K+ L + G N L + W ++++ +
Sbjct: 3 AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV 62
Query: 91 VLLWTGAVLCFIAYLIEFHISEDASKDNLWLGIVLVTVCIITGIFSYSQEAKSARIMDSF 150
+L A + F+ E + + V++ + I I QE + +++
Sbjct: 63 RILLLAACISFVLAWFE---EGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 119
Query: 151 KNMVPQYANVIRDGQKKTILSSELVRGDVVDVKFGDRIPADIRIIESHGFKVDNSSLTGE 210
K P D+ P ++ E GE
Sbjct: 120 KEYEPAATE-------------------------QDKTPLQQKLDE-----------FGE 143
Query: 211 AEPQARNASESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIAGLTSGLESGD 270
++ + +G G
Sbjct: 144 ----------------------------QLSKVISLICVAVWLINIGHFNDPVHGGSWIR 175
Query: 271 TPIAKEIHHFMHLISAWAIFLGVTFFFLSFALGYAWIDAVIFLIGIIVANVPEGLLATVT 330
I + + VA +PEGL A +T
Sbjct: 176 G----------------------------------AIYYFKIAVALAVAAIPEGLPAVIT 201
Query: 331 VCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDK--TGTLTQNRMTVTHLSF 382
CL+L +RMA KN +V+ L +VETLG + ++ N V +
Sbjct: 202 TCLALGTRRMAKKNAIVRSLPSVETLGRAIYNNMKQFIRYLISSNVGEVVCIFL 255
>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
{Staphylococcus aureus [TaxId: 1280]}
Length = 380
Score = 171 bits (433), Expect = 4e-47
Identities = 45/422 (10%), Positives = 106/422 (25%), Gaps = 70/422 (16%)
Query: 331 VCLSLTAKRMASKNCVVKHLEAVETLGSTSTICSDKTGTLTQNRMTVTHLSFDKEVFEVD 390
V LS S V + L LG S I + + DK + ++
Sbjct: 11 VFLSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQDIRNRIFQKDKILNKL- 69
Query: 391 YFKDPTGLIEKVRNMSSYKDLTLAGSLCNRAEFTPNQEKIQILKREVMGDASEAAILKFS 450
K ++S D+ + + + + A +
Sbjct: 70 ----------KSLGLNSNWDMLFIVFSIHLID-----------ILKKLSHDEIEAFMYQD 108
Query: 451 ELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDRCSTMKQ 510
E + + ++ ++ + NN Y + + A
Sbjct: 109 EPVELKLQNISTNLADCFNLNEQLPLQFLDNVKVGKNNIYAALEEFATTE---------- 158
Query: 511 GDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGL 570
+ + ++ L L + +E
Sbjct: 159 ----LHVSDATLFSLKGALWTLAQEVYQEWYLGS---------KLYEDVEKKIARTTFKT 205
Query: 571 RFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLED 630
++ ++ P V + + AG + + TG + +G++
Sbjct: 206 GYIYQEIIL-RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIA 264
Query: 631 IAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVE 690
A + ++ ++ N + + +
Sbjct: 265 TA---------------SDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQ 309
Query: 691 GCQRLGAIVAVTGDGVNDSPALKKAD---IGIAMGITGSDVSKQT----ADMILLDDNFA 743
V + GD + D + +K IG G+ G D + + AD ++ ++
Sbjct: 310 DNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLG 367
Query: 744 SI 745
+
Sbjct: 368 EL 369
>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic
domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 168
Score = 145 bits (366), Expect = 1e-40
Identities = 73/181 (40%), Positives = 96/181 (53%), Gaps = 23/181 (12%)
Query: 572 FLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDI 631
+ +DPPR V ++ CR AGIRVIM+TGD+ TA AI + +GI E E +
Sbjct: 11 GTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVAD-- 68
Query: 632 AKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEG 691
G D+ + R FAR P+ K IVE
Sbjct: 69 ------------------RAYTGREFDDLPLAEQREA--CRRACCFARVEPSHKSKIVEY 108
Query: 692 CQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEE 751
Q I A+TGDGVND+PALKKA+IGIAMG +G+ V+K ++M+L DDNF++IV VEE
Sbjct: 109 LQSYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEE 167
Query: 752 G 752
G
Sbjct: 168 G 168
>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 239
Score = 109 bits (273), Expect = 2e-27
Identities = 46/245 (18%), Positives = 83/245 (33%), Gaps = 47/245 (19%)
Query: 375 MTVTHLSFDKEV---------FEVD---YFKDPTGLIE------KVRNMSSYKDLTLAGS 416
M+V + +V F + Y P G + + +L +
Sbjct: 1 MSVCKMFIIDKVDGDFCSLNEFSITGSTY--APEGEVLKNDKPIRSGQFDGLVELATICA 58
Query: 417 LCNRAEFTPNQEKIQILKREVMGDASEAAILKFS----------------ELAIGDVVEF 460
LCN + N+ K E +G+A+E A+ E A
Sbjct: 59 LCNDSSLDFNETKGVY---EKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVI 115
Query: 461 RNRHKKALEIPFNSTDKYQVSIHIMPNNE-----YLLVMKGAPERILDRCSTMKQGDKDV 515
R KK + F+ K + + +KGAPE ++DRC+ ++ G V
Sbjct: 116 RQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRV 175
Query: 516 ELDAKNRHEVEEILEQLG--NYGERVLGFCDYALPPAKFPAGFELKSDPPNFPLTGLRFL 573
+ + ++ ++++ G R L PP + + S T L F+
Sbjct: 176 PMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLD-DSSRFMEYETDLTFV 234
Query: 574 GLMSM 578
G++ M
Sbjct: 235 GVVGM 239
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 86.3 bits (213), Expect = 2e-20
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 55/181 (30%)
Query: 570 LRFLGLMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLE 629
D + + AV + + GI+V M+TGD+ +A+AI++ +
Sbjct: 10 KTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL----------- 58
Query: 630 DIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIV 689
+ ++V A P QK V
Sbjct: 59 ------------------------------------------NLDLVIAEVLPHQKSEEV 76
Query: 690 EGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGV 749
+ Q +VA GDG+ND+PAL +AD+GIA+G +GSDV+ ++ D++L+ D+ +V +
Sbjct: 77 KKLQA-KEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 134
Query: 750 E 750
+
Sbjct: 135 Q 135
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 115
Score = 80.5 bits (198), Expect = 1e-18
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 156 QYANVIRDGQK--KTILSSELVRGDVVDVKFGDRIPADIRIIE--SHGFKVDNSSLTGEA 211
+ V R +K + I + ++V GD+V+V GD++PADIRI+ S +VD S LTGE+
Sbjct: 1 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGES 60
Query: 212 EPQARNAS---ESTTIVLEAKNLAFFSTNAVEGTAKGIVILCGDNTVMGRIA 260
++ + + + KN+ F TN G A GIV G +T +G+I
Sbjct: 61 VSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIR 112
>d2feaa1 c.108.1.20 (A:2-227)
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}
Length = 226
Score = 76.2 bits (186), Expect = 6e-16
Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 30/181 (16%)
Query: 581 PPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRVPVS 640
R + VA I +++G + + +
Sbjct: 75 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVE-------------------- 114
Query: 641 SLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVA 700
D + + + K ++ +
Sbjct: 115 -KDRIYCNHASFDNDYIHIDWPH--------SCKGTCSNQCGCCKPSVIHELSEPNQYII 165
Query: 701 VTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDNLK 760
+ GD V D A K +D+ A ++ +Q + + D F I +E + + + L+
Sbjct: 166 MIGDSVTDVEAAKLSDLCFARDYLLNECREQNLNHLPYQD-FYEIRKEIENVKEVQEWLQ 224
Query: 761 K 761
Sbjct: 225 N 225
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 58.5 bits (140), Expect = 5e-10
Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 35/202 (17%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI------------------ISEGS 625
+A+ + S GI +++VTG+ A+A + +G I S
Sbjct: 22 EKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISYKKKRIFLAS 81
Query: 626 ETLEDIAKRR------RVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVF-- 677
E I S P +VI + T ++ N L + V
Sbjct: 82 MDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVDSG 141
Query: 678 --------ARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVS 729
+ E VA GDG ND A K +A+ +
Sbjct: 142 FAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVA-QAPKIL 200
Query: 730 KQTADMILLDDNFASIVTGVEE 751
K+ AD + + +
Sbjct: 201 KENADYVTKKEYGEGGAEAIYH 222
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 57.7 bits (138), Expect = 9e-10
Identities = 25/204 (12%), Positives = 58/204 (28%), Gaps = 33/204 (16%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG----IISEGSETLEDIAKRRRVPV 639
+++ G+ V +++G+ A+ +G + E + D +
Sbjct: 23 TKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFF 82
Query: 640 SSLDPRESTTIVIQGSILRDMTT--------------EQLENVLRTHREIVFARTSPTQK 685
S+ + + + + +R + T E ++ V + F
Sbjct: 83 SNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYS 142
Query: 686 LHIVEGCQRLGAI--------------VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQ 731
H++ + + V GD ND P + +D K
Sbjct: 143 WHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKACPA-NATDNIKA 201
Query: 732 TADMILLDDNFASIVTGVEEGRLI 755
+D + I + L+
Sbjct: 202 VSDFVSDYSYGEEIGQIFKHFELM 225
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 46.8 bits (110), Expect = 3e-06
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Query: 628 LEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLH 687
++ + +R +V + S E + +++ + +LE + + R + + K
Sbjct: 78 VDWLRERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLE-IDDSDRVVGYQLRQKDPKRQ 136
Query: 688 IVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDD 740
V + L V GD ND+ L +A GI +V ++ +
Sbjct: 137 SVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFH-APENVIREFPQFPAVHT 188
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 44.1 bits (103), Expect = 3e-05
Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 32/160 (20%)
Query: 575 LMSMIDPPRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKR 634
+ P + + V++ + ++V +++G + +A + I +
Sbjct: 76 IAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPAT----------- 124
Query: 635 RRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQR 694
V + E + + +++
Sbjct: 125 ---------------NVFANRLKFYFNGEYAGFDETQP---TAESGGKGKVIKLLKEKFH 166
Query: 695 LGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTAD 734
I+ + GDG D A AD I G G+ + +Q D
Sbjct: 167 FKKIIMI-GDGATDMEACPPADAFIGFG--GNVIRQQVKD 203
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 43.0 bits (100), Expect = 1e-04
Identities = 27/143 (18%), Positives = 48/143 (33%), Gaps = 17/143 (11%)
Query: 626 ETLEDIAKRRRVPVSSLDPRESTTIVIQGSILRDMTTEQLENVLRTHREIVFARTSPTQK 685
+ D +P S + + ++ + + E+ + VL + R P
Sbjct: 122 KIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITE---EEEKEVLPSIPTCEIGRWYPAFA 178
Query: 686 LHIVEGCQRLGAI-------------VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQT 732
+G + I GDG ND L+ A IG+AMG + K
Sbjct: 179 DVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMG-QAKEDVKAA 237
Query: 733 ADMILLDDNFASIVTGVEEGRLI 755
AD + + I ++ +I
Sbjct: 238 ADYVTAPIDEDGISKAMKHFGII 260
Score = 28.0 bits (61), Expect = 5.8
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAK 616
+ +A+ + G+++ + TG +++
Sbjct: 22 SSTIEALEAAHAKGLKIFIATGRPKAIINNLSE 54
>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 210
Score = 42.1 bits (97), Expect = 1e-04
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 660 MTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGI 719
+ + + E++ I + GDG ND KKA + I
Sbjct: 122 LIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGANDISMFKKAGLKI 181
Query: 720 AMGITGSDVSKQTADMILLDDNFASIVTGVE 750
A + K+ AD+ + + I+ ++
Sbjct: 182 AFC--AKPILKEKADICIEKRDLREILKYIK 210
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 41.1 bits (95), Expect = 4e-04
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEEGRLIFDN 758
V GD ND+ LK A AMG ++ KQ A D+N + ++ + DN
Sbjct: 209 VVAIGDSGNDAEMLKMARYSFAMG-NAAENIKQIARYATDDNNHEGALNVIQA---VLDN 264
Query: 759 LKK 761
Sbjct: 265 TYP 267
Score = 28.8 bits (63), Expect = 3.1
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 582 PRPAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVG 619
+P + + GI+ ++ +G+ + +
Sbjct: 21 NQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELK 58
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 41.1 bits (95), Expect = 4e-04
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 684 QKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFA 743
+ + IV GD ND ++A + +AM + K+ +D++ L +N +
Sbjct: 195 LRFLRERMNWKKEEIVVF-GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIVTLTNNDS 252
Query: 744 SIVTGVEEGRLIFDNL 759
+ +E R+ D L
Sbjct: 253 GVSYVLE--RISTDCL 266
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 41.1 bits (95), Expect = 4e-04
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEE 751
+ GD ND ++ A +G+A+ K+ A+ + + + +E+
Sbjct: 216 IMAIGDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFVTKSNLEDGVAFAIEK 267
Score = 29.9 bits (66), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEG 624
PAV +A+A R+ G+ V++ TG K + + G
Sbjct: 24 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPG 64
>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus
subtilis [TaxId: 1423]}
Length = 285
Score = 40.7 bits (94), Expect = 6e-04
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIVTGVEE 751
A GD +ND L+ A G+AMG + K AD + L ++ + ++
Sbjct: 232 TAAVGDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAVTLTNDEHGVAHMMKH 283
Score = 29.5 bits (65), Expect = 2.0
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGI 620
+A+ + + GI V++ TG +I + +GI
Sbjct: 21 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI 57
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 39.6 bits (91), Expect = 0.001
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNFASIV 746
V V GD ND L A+ +D +K A +L + V
Sbjct: 226 VLVVGDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAV 272
Score = 28.4 bits (62), Expect = 3.8
Identities = 7/54 (12%), Positives = 15/54 (27%)
Query: 584 PAVPDAVAKCRSAGIRVIMVTGDHPVTAKAIAKAVGIISEGSETLEDIAKRRRV 637
DA+ + G V + TG V + + + + +
Sbjct: 31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTI 84
>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus
influenzae, HI1679 [TaxId: 727]}
Length = 177
Score = 36.6 bits (84), Expect = 0.005
Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 1/80 (1%)
Query: 658 RDMTTEQLENVLRTHREIVFARTSPTQKLHIVEGCQRLGAIVAVTGDGVNDSPALKKADI 717
+ L + T +++ A GD D PA
Sbjct: 58 DSPILRRRIADLGIKLFFLGKLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGT 117
Query: 718 GIAMGITGSDVSKQTADMIL 737
A+ K D +L
Sbjct: 118 SFAVA-DAPIYVKNAVDHVL 136
>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 243
Score = 33.1 bits (74), Expect = 0.13
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMI 736
GD ND P + D +G ++ + +I
Sbjct: 199 SYAVGDSYNDFPMFEVVDKVFIVGSLKHKKAQNVSSII 236
>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate
phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}
Length = 232
Score = 32.0 bits (71), Expect = 0.24
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 687 HIVEGCQRLG---AIVAVTGDGVNDSPALKKADIGIAMG 722
I+ Q+L GDG ND+P L+ D + +
Sbjct: 191 WIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVK 229
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 75
Score = 27.8 bits (62), Expect = 1.3
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 297 FLSFALGYAWIDAVIFLIGII 317
F + +D++ L II
Sbjct: 55 FGCITYAHGLLDSLRMLHRII 75
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 29.2 bits (64), Expect = 2.1
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 699 VAVTGDGVNDSPALKKADIGIAMGITGSDVSKQTADMILLDDNF 742
V GD ND + + G+ + D ++
Sbjct: 181 TLVCGDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
{Deinococcus radiodurans [TaxId: 1299]}
Length = 401
Score = 29.6 bits (65), Expect = 2.4
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 7/67 (10%)
Query: 509 KQGDK-DVELDAKNRHEVEEILEQLGNYG------ERVLGFCDYALPPAKFPAGFELKSD 561
+ +VEL A+ R + +L L +L + + +
Sbjct: 5 TPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRAALN 64
Query: 562 PPNFPLT 568
P+
Sbjct: 65 AVELPVP 71
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon
Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 25.8 bits (57), Expect = 5.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 148 DSFKNMVPQYANVIRDGQKKTILSSELVRGDVV 180
D N+V A +I+DG+ ++RGD V
Sbjct: 33 DIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNV 65
>d1pc6a_ d.262.1.1 (A:) NinB {Bacteriophage lambda [TaxId: 10710]}
Length = 141
Score = 27.1 bits (60), Expect = 7.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 275 KEIHHFMHLISAWAIFLGVTF 295
E + LI A+ GV +
Sbjct: 107 GEFAELLELIQAFGTERGVKW 127
>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
(Saccharomyces cerevisiae), pII [TaxId: 4932]}
Length = 262
Score = 27.5 bits (61), Expect = 7.8
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 10/101 (9%)
Query: 885 LEDSYGQEWTYASRKILEYTCHTAFFIAIVVVQWADLLICKTRYNSLVHQGMNNWVLNFG 944
++ +G T RK++ A + IC+ R H + G
Sbjct: 141 FQNEFGINTTVQERKLIRRLSELIGARAARLSVCGIAAICQKRGYKTGHIAAD------G 194
Query: 945 IVFETVAACIVSYCPGMDEILKTYPVRAEWWLPAVPFAIVI 985
V+ + LK + L P IV
Sbjct: 195 SVYNRY----PGFKEKAANALKDIYGWTQTSLDDYPIKIVP 231
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate
uridylyltransferase {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 156
Score = 26.6 bits (58), Expect = 9.0
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 449 FSELAIGDVVEFRNRHKKALEIPFNSTDKYQVSIHIMPNNEYLLVMKGAPERILDRCSTM 508
E V + H ++ PF +T ++ I I+P + + +D +
Sbjct: 23 LCEAKSKHFVIDESSHFVSV-APFAATYPFE--IWIIPKDHSSHFHHLDDVKAVDLGGLL 79
Query: 509 KQGDKDVELDAKNRHEVEEILEQLGNYGERVLGFCDYAL---PPAKFPAGFEL 558
K + + + I E L + + L P GFE+
Sbjct: 80 KLMLQKIAKQLNDPPYNYMIHTSPLKVTESQLPYTHWFLQIVPQLSGVGGFEI 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,811,917
Number of extensions: 186441
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 45
Length of query: 1010
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 916
Effective length of database: 1,116,976
Effective search space: 1023150016
Effective search space used: 1023150016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.8 bits)