BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3626
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 85/189 (44%), Positives = 105/189 (55%), Gaps = 43/189 (22%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+KKIAIFGATG TGL +L A++ G
Sbjct: 3 VKKIAIFGATGQTGLTTLAQAVQAGY---------------------------------- 28
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRN 120
EV L+RD RLPSE ++ GDVL+ ADV K + G+D V+V LGTRN
Sbjct: 29 ---------EVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN 79
Query: 121 DLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNVL 180
DLSPTTVMSEG +NIV AMK + V V C SAFL ++P+KVPP V DDH RM+ VL
Sbjct: 80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVL 139
Query: 181 KDSGLNYIA 189
++SGL Y+A
Sbjct: 140 RESGLKYVA 148
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+KKI + GA+G G L AL +G EV ++R P+++ E + +++ + DV L +V
Sbjct: 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVC 62
Query: 61 KAIEGKDGL 69
+ +G D +
Sbjct: 63 EVCKGADAV 71
>pdb|3QVO|A Chain A, Structure Of A Rossmann-Fold Nad(P)-Binding Family
Protein From Shigella Flexneri
Length = 236
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2 KKIAIFGATGMTGLCSL-EAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
K + I GA G + + A KQ ++ R P ++ Y + +II GDVL A +K
Sbjct: 24 KNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIXGDVLNHAALK 83
Query: 61 KAIEGKD 67
+A +G+D
Sbjct: 84 QAXQGQD 90
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 66 KDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRNDLSPT 125
K ++ R P ++ Y + +II GDVL A +K+A +G+D +V A T DL
Sbjct: 46 KQTIKQTLFARQPAKIHKPYPTNSQIIXGDVLNHAALKQAXQGQD-IVYANLTGEDLDIQ 104
Query: 126 TVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVND--------DHQRMY 177
+++ A K +V + LS ++ E VP F N+ +R
Sbjct: 105 A------NSVIAAXKACDVKRLIFVLSLGIYDE---VPGKFVEWNNAVIGEPLKPFRRAA 155
Query: 178 NVLKDSGLNY 187
+ ++ SGL Y
Sbjct: 156 DAIEASGLEY 165
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQR 37
KIA+ GATG G + A ++G EV ++RDPQ+
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK 36
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 13 TGLCSLEAALKQGLEVCTL------LRDPQRLPSEYHSKVEIIQGDVLKLA 57
TG+ +LE A ++G EV L LR +R E + K+E +QGDVL++A
Sbjct: 52 TGIPTLELA-ERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA 101
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 74 LLRDPQRLPSEYHSKVEIIQGDVLKLA 100
+LR +R E + K+E +QGDVL++A
Sbjct: 75 MLRVARRKAKERNLKIEFLQGDVLEIA 101
>pdb|2BKA|A Chain A, Cc3(Tip30)crystal Strucure
Length = 242
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGL--EVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADV 59
K + I GA+G TG L+ L+QGL +V + R E + V D KL D
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDY 78
Query: 60 KKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 105
A +G D + C L + +E +V+ + VLK A++ KA
Sbjct: 79 ASAFQGHD-VGFCCLGTTRGKAGAEGFVRVD--RDYVLKSAELAKA 121
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 4 IAIFGATGMTGLCSLEAALKQ--GLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
IAI GATG G +E+ +K ++ ++R+P + + + + Q D A +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTS 61
Query: 62 AIEGKDGLEVCTLLRDPQRLP 82
A++G + L + + QR P
Sbjct: 62 ALQGVEKLLLISSSEVGQRAP 82
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 48 IIQGDVLKLADVKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKL 99
II DVL+ A +K + G +G E RD Q LP ++V + DV+ L
Sbjct: 22 IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVL 73
>pdb|1GJI|A Chain A, Crystal Structure Of C-Rel Bound To Dna
pdb|1GJI|B Chain B, Crystal Structure Of C-Rel Bound To Dna
Length = 275
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 114 VALGTRNDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFL 155
++L ++P V E + NI EY+++VV +C AFL
Sbjct: 112 ISLRISKKINPFNVPEEQLHNI----DEYDLNVVRLCFQAFL 149
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 24 QGL---EVCTLLRDPQR--LPSEYHSKVEIIQGDVLKLADVKKAIEGKDGL-EVCTLLRD 77
QGL E+ L+++ R + EYH KV I GD L L + I G + L CT L
Sbjct: 157 QGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLALD--PEEIRGTELLIHECTFLDA 214
Query: 78 PQRLPSEYHSKVEIIQGDVLKLADVKKAI 106
R + + E+++ +K A VKK I
Sbjct: 215 RDRRYKNHAAIDEVMES--VKAAGVKKVI 241
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 105 AIEGKDGVVVALGTRNDLSPTTVMSEGMKNIVTAMKE 141
A+E + G V LG ND P + G +N T+ ++
Sbjct: 137 AVENESGKQVILGYENDARPILYLKPGRQNTKTSHRQ 173
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 77 DPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRNDLSPTTVMSEGMKNIV 136
DP+ +EYH ++ I D++ A+EG D + + N L P + K ++
Sbjct: 232 DPETCLNEYHLEIARITNPERLSGDLETALEGAD-FFIGVSRGNILKPEWIKKXSRKPVI 290
Query: 137 TAM 139
A+
Sbjct: 291 FAL 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,492,669
Number of Sequences: 62578
Number of extensions: 218293
Number of successful extensions: 559
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 28
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)