RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3626
(189 letters)
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 139 bits (352), Expect = 5e-42
Identities = 84/187 (44%), Positives = 103/187 (55%), Gaps = 43/187 (22%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+KKIAIFGATG TGL +L A++ G EV
Sbjct: 3 VKKIAIFGATGQTGLTTLAQAVQAGYEV-------------------------------- 30
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRN 120
L+RD RLPSE ++ GDVL+ ADV K + G+D V+V LGTRN
Sbjct: 31 TV-----------LVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN 79
Query: 121 DLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNVL 180
DLSPTTVMSEG +NIV AMK + V V C SAFL ++P+KVPP V DDH RM+ VL
Sbjct: 80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVL 139
Query: 181 KDSGLNY 187
++SGL Y
Sbjct: 140 RESGLKY 146
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 100 bits (250), Expect = 1e-26
Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 54/192 (28%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
MK + I GA G + +
Sbjct: 23 MKNVLILGAGGQIARHVINQLADKQ----------------------------------- 47
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRN 120
++ R P ++ Y + +II GDVL A +K+A++G+D V L +
Sbjct: 48 -------TIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED 100
Query: 121 DLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEP-----SKVPPMFHNVNDDHQR 175
+ +++ AMK +V + LS ++ E + +R
Sbjct: 101 -------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRR 153
Query: 176 MYNVLKDSGLNY 187
+ ++ SGL Y
Sbjct: 154 AADAIEASGLEY 165
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 85.5 bits (212), Expect = 5e-21
Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 55/199 (27%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+KKI + GA+G G L AL +G EV ++R P+++ E
Sbjct: 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE------------------- 44
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALG-TR 119
+ +++ + DV L +V + +G D V+ A
Sbjct: 45 -------------------------NEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGW 79
Query: 120 NDLSPTTVMSEGMKNIVTAMKEYNVS-VVSVCLSAFLFYEPSKVPPMFHNVNDD------ 172
N+ + I+ +K+ V+ + V + LF P V ++
Sbjct: 80 NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVK 139
Query: 173 ---HQRMYNVLKDSGLNYI 188
+ ++K+ ++++
Sbjct: 140 ALGEFYLNFLMKEKEIDWV 158
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 83.1 bits (205), Expect = 4e-20
Identities = 30/196 (15%), Positives = 50/196 (25%), Gaps = 60/196 (30%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
I I GA G L
Sbjct: 5 YXYITILGAAGQIAQXLTATLLTYT----------------------------------- 29
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEY---HSKVEIIQGDVLKLADVKKAIEGKDGVVVALG 117
+ + R + H +V +I+G +++A+ + V V
Sbjct: 30 -------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82
Query: 118 TRNDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYE------PSKVPPMFHNVND 171
M +IV A+ N+ V A L E + +
Sbjct: 83 E---------SGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQ 133
Query: 172 DHQRMYNVLKDSGLNY 187
++ NVL++S LNY
Sbjct: 134 GERQARNVLRESNLNY 149
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 77.7 bits (192), Expect = 4e-18
Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 51/190 (26%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
KI I G+TG G L++ ++ R +++P ++ V+ + DV +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ--YNNVKAVHFDVDWTPE---- 55
Query: 63 IEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRNDL 122
++ K + G D ++ G+
Sbjct: 56 --------------------------------------EMAKQLHGMDAIINVSGSGGK- 76
Query: 123 SPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDD-----HQRMY 177
S V G ++ A ++ V + LS +P K + D H
Sbjct: 77 SLLKVDLYGAVKLMQAAEKAEVKRF-ILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADL 135
Query: 178 NVLKDSGLNY 187
+ K++ L+Y
Sbjct: 136 YLTKETNLDY 145
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 72.4 bits (178), Expect = 4e-16
Identities = 24/188 (12%), Positives = 55/188 (29%), Gaps = 48/188 (25%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
++ + GA G L +G E ++R+ ++ P
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGP----------------------E 60
Query: 63 IEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTR--- 119
+ + ++ + ++ D A D VV A G+
Sbjct: 61 LRERGASDI--------------------VVANLE--EDFSHAFASIDAVVFAAGSGPHT 98
Query: 120 NDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNV 179
+ G + ++ + + +S+ +P + P + + +
Sbjct: 99 GADKTILIDLWGAIKTIQEAEKRGIKRF-IMVSSVGTVDPDQGPMNMRHYLVAKRLADDE 157
Query: 180 LKDSGLNY 187
LK S L+Y
Sbjct: 158 LKRSSLDY 165
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 70.4 bits (172), Expect = 3e-15
Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 60/198 (30%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
KI I GATG G LE A +G EV ++R+ ++ H + I+Q D+
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-HKDINILQKDI--------- 51
Query: 63 IEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRNDL 122
+ ++ VV A G D
Sbjct: 52 ------------------------------------FDLTLSDLSDQNVVVDAYGISPDE 75
Query: 123 SPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAF----------LFYEPSKVPPMFHNVNDD 172
+ V + ++++ + + V A L ++
Sbjct: 76 AEKHV--TSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARA 133
Query: 173 HQRMYNV--LKDSGLNYI 188
+ + ++
Sbjct: 134 QAKQLEHLKSHQAEFSWT 151
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 67.4 bits (164), Expect = 3e-14
Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 57/198 (28%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
KIA+ GATG G + A ++G EV ++RDPQ+
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD---------------------- 39
Query: 63 IEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRNDL 122
+ L + ++ D VV AL
Sbjct: 40 -----------------------RLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGS 76
Query: 123 SPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFY------------EPSKVPPMFHNVN 170
+ + ++V+ ++ + V + SA L E + P +
Sbjct: 77 GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGAL 136
Query: 171 DDHQRMYNVLKDSGLNYI 188
+ + ++ +N+I
Sbjct: 137 YQYYEYQFLQMNANVNWI 154
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 61.8 bits (150), Expect = 4e-12
Identities = 33/192 (17%), Positives = 61/192 (31%), Gaps = 31/192 (16%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQG--LEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLAD 58
+ + + GA+G TG + + L+R Q + + ++ GD+
Sbjct: 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK-EKIGGEADVFIGDITDADS 62
Query: 59 VKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGT 118
+ A +G D L + T + + +K + G
Sbjct: 63 INPAFQGIDALVILT------------SA-----------VPKMKPGFDPTKGGRPEFIF 99
Query: 119 RNDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPM---FHNVNDDHQR 175
+ P V G KN + A K V + V + + + P N+ ++
Sbjct: 100 EDGQYPEQVDWIGQKNQIDAAKVAGVKHI-VVVGS-MGGTNPDHPLNKLGNGNILVWKRK 157
Query: 176 MYNVLKDSGLNY 187
L DSG Y
Sbjct: 158 AEQYLADSGTPY 169
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 54.8 bits (132), Expect = 1e-09
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGL--EVCTLLRDPQRLPSEYHSKVEIIQGDVLKLAD 58
K + I GA+G TG L+ L+QGL +V + R E + V D KL D
Sbjct: 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDD 77
Query: 59 VKKAIEGKD 67
A +G D
Sbjct: 78 YASAFQGHD 86
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 55.3 bits (133), Expect = 1e-09
Identities = 32/188 (17%), Positives = 57/188 (30%), Gaps = 41/188 (21%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
KI I G TG G + A++K G L+R
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAA---------------------- 40
Query: 62 AIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRND 121
+ + + V +++GD+ + KAI+ D V+ A G
Sbjct: 41 -----------NPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAG---- 85
Query: 122 LSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNVLK 181
++ E I+ A+KE L + V ++ + V++
Sbjct: 86 ----RLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIE 141
Query: 182 DSGLNYIA 189
G+ Y
Sbjct: 142 AEGVPYTY 149
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 54.9 bits (132), Expect = 2e-09
Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 42/186 (22%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
+I + GATG G +A+L G L+R+ +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNS-------------------- 44
Query: 62 AIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRND 121
Q L S S I+ G + A + +A++ D V+ +G
Sbjct: 45 --------------EKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVG---- 86
Query: 122 LSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNVLK 181
++ E NI+ A+KE + +V + ++ ++
Sbjct: 87 ----SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIE 142
Query: 182 DSGLNY 187
G+ Y
Sbjct: 143 AEGIPY 148
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 53.0 bits (127), Expect = 7e-09
Identities = 34/190 (17%), Positives = 61/190 (32%), Gaps = 44/190 (23%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
M+KI I+G TG G + A+L R P S V++ +
Sbjct: 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLT--PDSTPSSVQLRE---------- 51
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGTRN 120
V II+G++ + + ++ D V+ AL
Sbjct: 52 ----------------------EFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPFPM 89
Query: 121 DLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAF-LFYEPSKVPPMFHNVNDDHQRMYNV 179
S +I+ A+K + S F + K P F +V + + +
Sbjct: 90 ISSQ--------IHIINAIKAAGN-IKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRA 140
Query: 180 LKDSGLNYIA 189
++ + L Y
Sbjct: 141 IEAAALPYTY 150
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 53.1 bits (128), Expect = 7e-09
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
K A+ GATG+ G + A G ++ + R ++ + + E ++L A +++A
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERA 74
Query: 63 IEGKDGL 69
+ G DG+
Sbjct: 75 LRGLDGV 81
Score = 45.7 bits (109), Expect = 2e-06
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 66 KDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV-VALGTRNDLSP 124
G ++ + R ++ + + E ++L A +++A+ G DGV+ A +
Sbjct: 35 AAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRR 94
Query: 125 TTVMS----EGMKNIVTAMKEYNV 144
A + V
Sbjct: 95 WQEEVASALGQTNPFYAACLQARV 118
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 53.0 bits (127), Expect = 7e-09
Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 23/167 (13%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSK--------VEIIQGDV 53
++ I G TG G + A++ G L R + ++I+ +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 54 LKLADVKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV 113
+ A++ D + + L L ++++++ +K+A K +
Sbjct: 65 DDHQRLVDALKQVDVV-ISALAGGV--LSHHILEQLKLVE-------AIKEAGNIKRFLP 114
Query: 114 VALGTRND-----LSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFL 155
G D L P ++ + + A++ ++ V + F
Sbjct: 115 SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFA 161
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 51.2 bits (122), Expect = 4e-08
Identities = 27/188 (14%), Positives = 56/188 (29%), Gaps = 46/188 (24%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
++ I GATG G A+L L R R PS
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPS--------------------- 49
Query: 62 AIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVV--ALGTR 119
+ + I+ G + + ++K ++ + +V +G
Sbjct: 50 ---------------KAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGGE 94
Query: 120 NDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYNV 179
+ L +V AMK + + N+ + +R+ +
Sbjct: 95 SILDQ--------IALVKAMKAVGTIKRFLPSEFGHDVNRADPVEPGLNMYREKRRVRQL 146
Query: 180 LKDSGLNY 187
+++SG+ +
Sbjct: 147 VEESGIPF 154
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 50.7 bits (121), Expect = 5e-08
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRD----PQRLPSEYHSKVEIIQGDVLKLA 57
KI IFG TG G ++ +LK G R L I++G++ +
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHE 71
Query: 58 DVKKAIEGKDGLEVCTL 74
+ + ++ D + + L
Sbjct: 72 KLVELMKKVDVV-ISAL 87
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 48.2 bits (115), Expect = 3e-07
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQG-LEVCTLLRDPQRLPSEYHSK--VEIIQGDVLKLAD 58
K + +FG TG G L+ G +V + R+P++ ++ E++QGD
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVI 65
Query: 59 VKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 103
++ A+ G + T + E + D+ + +
Sbjct: 66 MELALNGAYATFIVTNYWESCSQEQEVKQGKLLA--DLARRLGLH 108
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 45.0 bits (107), Expect = 4e-06
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLL-RDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
I + GATG G A+ ++ + R+ +++P ++ KV + Q D + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVE 61
Query: 62 AIEGKDGL 69
A +G D +
Sbjct: 62 AFKGMDTV 69
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 44.8 bits (106), Expect = 6e-06
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDP-----QRLPSEYHSKVEIIQGDVL-K 55
K IA+ GATG G + A G V + + L + V + QG +L
Sbjct: 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAI--PNVTLFQGPLLNN 63
Query: 56 LADVKKAIEGKDGL 69
+ + EG
Sbjct: 64 VPLMDTLFEGAHLA 77
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 43.0 bits (102), Expect = 2e-05
Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Query: 59 VKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGT 118
++ ++ ++ ++R+ ++ + VE+ GD + ++KA G ++ G
Sbjct: 17 IQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP 76
Query: 119 RNDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRMYN 178
D T++ N+V A ++ V + + F E S +P H
Sbjct: 77 HYD---NTLLIVQHANVVKAARDAGVKHI-AYTG-YAFAEESIIPLA-----HVHLATEY 126
Query: 179 VLKDSGLNY 187
++ + + Y
Sbjct: 127 AIRTTNIPY 135
Score = 40.3 bits (95), Expect = 1e-04
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 4 IAIFGATGMTGLCSLEAALKQ--GLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
IA+ GATG G ++ LK+ ++ ++R+ ++ + VE+ GD + ++K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQK 62
Query: 62 AIEGKDGL 69
A G L
Sbjct: 63 AFAGVSKL 70
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 38.6 bits (90), Expect = 2e-04
Identities = 14/67 (20%), Positives = 20/67 (29%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
I + GA + + + V D L V Q D A +
Sbjct: 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLA 64
Query: 61 KAIEGKD 67
KA+ G D
Sbjct: 65 KALGGFD 71
Score = 25.9 bits (57), Expect = 4.7
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 76 RDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVA 115
D L V Q D A + KA+ G D V+ A
Sbjct: 37 HDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISA 76
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 40.1 bits (93), Expect = 2e-04
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 3 KIA-IFGATGMTGLCSLEAALKQGL-----EVCTLLRDPQRLPSEYHSKVEIIQGDVLKL 56
+A I G TG+ G E +V + R + E + + +Q D+
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHE-DNPINYVQCDISDP 60
Query: 57 ADVKKAIEGKDG 68
D + +
Sbjct: 61 DDSQAKLSPLTD 72
Score = 36.2 bits (83), Expect = 0.003
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 68 GLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV-------VALGTRN 120
+V + R + E + + +Q D+ D + + V T
Sbjct: 30 PWKVYGVARRTRPAWHE-DNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQ 88
Query: 121 DLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLS 152
+ +N++ A+ ++ + L
Sbjct: 89 ENCEANSK--MFRNVLDAVIPNCPNLKHISLQ 118
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 40.1 bits (94), Expect = 2e-04
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+ KI I G G GL QG EV L R Q +P + V+ + DV + +
Sbjct: 3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLA 57
Query: 61 KAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQ--GDVLKLADVKKAI 106
+ + + V + S VE ++ L+ A ++
Sbjct: 58 SIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVF 105
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQG--LEVCTLLRDPQRLPSEYHSKVEIIQGDVLKL 56
K++ + GATG+TG L+ L + +V R H +++ G + +L
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL----AEHPRLDNPVGPLAEL 58
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 4 IAIFGATGMTGLCSLEAALKQ--GLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
IAI GATG G +E+ +K ++ ++R+P + + + + Q D A +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTS 61
Query: 62 AIEGKDGL 69
A++G + L
Sbjct: 62 ALQGVEKL 69
Score = 38.8 bits (91), Expect = 5e-04
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 59 VKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALGT 118
++ ++ ++ ++R+P + + + + Q D A + A++G + +++
Sbjct: 16 IESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLL---- 71
Query: 119 RNDLSPTTVMSEG--MKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVNDDHQRM 176
+S + V +N++ A K V + S L + S + D+H
Sbjct: 72 ---ISSSEVGQRAPQHRNVINAAKAAGVKFI-AYTS-LLHADTSPLGLA-----DEHIET 121
Query: 177 YNVLKDSGLNY 187
+L DSG+ Y
Sbjct: 122 EKMLADSGIVY 132
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 37.2 bits (86), Expect = 0.002
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPS-----EYHSKVEIIQGDVLKL 56
KK + TG G+ S +G EV R + + KV + +
Sbjct: 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADD 179
Query: 57 ADVKKAIEGKD 67
A +A++G
Sbjct: 180 ASRAEAVKGAH 190
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 36.1 bits (82), Expect = 0.004
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLP--SEYHSKVEIIQGDVLKLAD 58
K + + G+ G +L+ G++V R + S I DV A
Sbjct: 3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 61
Query: 59 VKKAIEGKD 67
+ + D
Sbjct: 62 LDAEVAKHD 70
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 34.0 bits (77), Expect = 0.024
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPS-EYHSKVEIIQGDVLKLADV 59
K + + G+ + A + V R + S + I DV + +
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSAL 82
Query: 60 KKAIEGKD 67
K + D
Sbjct: 83 DKVLADND 90
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 33.4 bits (77), Expect = 0.025
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 1 MKKIAIFGATGMTG--LCSLEAALKQGLEVCTLLRDPQRLPSEY-HSKVEIIQGDVLKLA 57
+ ++ + GA G G + EV D + + EI+ D+
Sbjct: 2 LNRLLVTGAAGGVGSAIR--PHLGTLAHEVRLS--D--IVDLGAAEAHEEIVACDLADAQ 55
Query: 58 DVKKAIEGKDG 68
V ++ DG
Sbjct: 56 AVHDLVKDCDG 66
Score = 30.4 bits (69), Expect = 0.33
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 89 VEIIQGDVLKLADVKKAIEGKDGVV--VALGTRNDL-SPTTVMSEGMKNIVTAMKEYNV 144
EI+ D+ V ++ DG++ + G N+ A +
Sbjct: 44 EEIVACDLADAQAVHDLVKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGK 102
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 32.9 bits (74), Expect = 0.035
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
++A+ G TG G G E+ R ++ ++ I + + A
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDA 61
Query: 63 IEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQG 94
E D + L + I++
Sbjct: 62 AEACD---IAVLTIPWEHAIDTARDLKNILRE 90
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 33.1 bits (76), Expect = 0.039
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 3 KIAIFGATGMTG--LCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADV 59
+AI G+ G+ G L G EV L+R + + + D+L ADV
Sbjct: 149 TVAITGSRGLVGRALT--AQLQTGGHEVIQLVRKEPKPGKRFWDPLNPAS-DLLDGADV 204
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 32.3 bits (73), Expect = 0.077
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
K +AI GA G G + + P + +QG + L D
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP--------EGRDRLQGMGIPLTDGD 62
Query: 61 KAIEGKDGLEVCT 73
I+ D + +
Sbjct: 63 GWIDEADVVVLAL 75
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 31.9 bits (72), Expect = 0.11
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
K+ I GA + + + LK +V + + L + ++ D +
Sbjct: 16 HMKVLILGAGNIGRAIAWD--LKDEFDVYIGDVNNENL-EKVKEFATPLKVDASNFDKLV 72
Query: 61 KAIEGKD 67
+ ++ +
Sbjct: 73 EVMKEFE 79
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter
pomeroyi DSS, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.66A {Ruegeria
pomeroyi dss-3}
Length = 286
Score = 31.4 bits (71), Expect = 0.16
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGD 52
+ FG G T A QG + R+P ++ + S E +
Sbjct: 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWP 55
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 30.8 bits (70), Expect = 0.21
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 86 HSKVEIIQGDVLKLADVKKAIEGKDGVV 113
E +Q D+ V + G DG+V
Sbjct: 42 GPNEECVQCDLADANAVNAMVAGCDGIV 69
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 30.6 bits (70), Expect = 0.22
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 80 RLPSEYHSKVEIIQGDVLK--LADVKKAIEGKDGVVVA 115
RL + +E+ GD L + + + ++
Sbjct: 83 RLEQRFGELLELHAGDALTFDFGSIARPGDEPSLRIIG 120
Score = 29.8 bits (68), Expect = 0.44
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 37 RLPSEYHSKVEIIQGDVLKLADVKKAIEGKDG 68
RL + +E+ GD L D D
Sbjct: 83 RLEQRFGELLELHAGDALTF-DFGSIARPGDE 113
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 30.9 bits (70), Expect = 0.23
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 60 KKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGD-----VLKLADVKKAIEGKDGVVV 114
+ + G EV L D S + GD L+ A+V+ A V+V
Sbjct: 128 LECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGA----RAVIV 183
Query: 115 ALGTRNDLSPTTV----MSEGMKNIVTAMKEYNVSV 146
L + ++ + + E ++ I A + N+
Sbjct: 184 DLESDSETIHCILGIRKIDESVRIIAEAERYENIEQ 219
Score = 25.9 bits (57), Expect = 8.6
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 24 QGLEVCTLLRDPQRLPSEYHSKVEIIQGD-----VLKLADVKKA 62
+G EV L D S + GD L+ A+V+ A
Sbjct: 135 RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGA 178
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 30.7 bits (70), Expect = 0.23
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 6 IFGA-TGMTGLCSLEAALKQGLEVCTLLRDPQR---LPSEYHSKVEIIQGDVLKLADVKK 61
+ GA +G G EAA+ G V R + L + Y + E I DV +
Sbjct: 10 VTGASSGF-GRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDV 68
Query: 62 AIE 64
Sbjct: 69 VAA 71
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 29.8 bits (68), Expect = 0.39
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 86 HSKVEIIQGDVLKLADVKKAIEGKDGVVVA 115
+ I Q D L+ D K VV
Sbjct: 74 QKNITIYQNDALQF-DFSSVKTDKPLRVVG 102
Score = 25.9 bits (58), Expect = 7.7
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 43 HSKVEIIQGDVLKLADVKKAIEGK 66
+ I Q D L+ D K
Sbjct: 74 QKNITIYQNDALQF-DFSSVKTDK 96
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 29.9 bits (68), Expect = 0.39
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 2 KKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
+++ + GATG+ G + + R E Q ++L V
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFE--------QVNLLDSNAVHH 54
Query: 62 AIE 64
I
Sbjct: 55 IIH 57
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 30.0 bits (68), Expect = 0.39
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 68 GLEVCTLLRDPQRLPSEYHSKVEIIQGD-----VLKLADVKKAIEGKDGVVVALG 117
G EV L D S + GD L+ A+V+ A V+V L
Sbjct: 30 GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGA----RAVIVDLE 80
Score = 25.8 bits (57), Expect = 8.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 24 QGLEVCTLLRDPQRLPSEYHSKVEIIQGD-----VLKLADVKKA 62
+G EV L D S + GD L+ A+V+ A
Sbjct: 29 RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGA 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.46
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 24/47 (51%)
Query: 18 LEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIE 64
L+A+LK L P+ LA +K +E
Sbjct: 25 LQASLK--------LYADDSAPA---------------LA-IKATME 47
Score = 25.7 bits (55), Expect = 7.3
Identities = 4/36 (11%), Positives = 10/36 (27%), Gaps = 15/36 (41%)
Query: 130 EGMKNIVTAMKEYNVSVVSVCLSAFLFYEPSKVPPM 165
+ +K + ++K Y P +
Sbjct: 20 QALKKLQASLK---------------LYADDSAPAL 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.46
Identities = 49/249 (19%), Positives = 75/249 (30%), Gaps = 92/249 (36%)
Query: 4 IAIFGATGMTG---------------------------LCSL-------EAALKQGLEVC 29
+AIFG G T L L E QGL +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 30 TLLRDPQRLPS-EYHSKVEI----IQGDVLKLADVKKAIEGKDGLEVCTLL-RDPQRLPS 83
L +P P +Y + I I V++LA + LL P L S
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIG--VIQLAHY---------VVTAKLLGFTPGELRS 265
Query: 84 EYHSKVEIIQGDV----LKLAD--------VKKAIEGKDGVVVALGTR-------NDLSP 124
QG V + D V+KAI V+ +G R L P
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT----VLFFIGVRCYEAYPNTSLPP 321
Query: 125 TTVMS--EGMKNIVTAMKEYNVSVVSV---CLSAFLFYEPSKVPPMFH----NVNDDHQR 175
+ + E + + + M +S+ ++ + ++ S +P VN +
Sbjct: 322 SILEDSLENNEGVPSPM----LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--K 375
Query: 176 MYNVLKDSG 184
V SG
Sbjct: 376 NLVV---SG 381
Score = 29.2 bits (65), Expect = 0.96
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 8/47 (17%)
Query: 4 IAIFGATGMTGLCSLEAALKQG-----LEVCTLLRDPQRLPSEYHSK 45
I FG G +GL L K G + TL +P +Y K
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD---DDYGFK 544
>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
structural genomics, protein structure initiative; HET:
GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4
c.1.9.9
Length = 475
Score = 30.0 bits (68), Expect = 0.49
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 99 LADVKKAIEGKDGVVVALGT----RNDLSPTTVMSEGMK 133
L + +A + + V ++ GT N S +V+ + K
Sbjct: 306 LFRLGRATDPEHRVKMSFGTDVGGGNRFSMISVLDDAYK 344
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 29.9 bits (67), Expect = 0.55
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGL 26
++KIAI GA G +GL + +A L +
Sbjct: 6 IRKIAIIGA-GPSGLVTAKALLAEKA 30
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A
1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A*
1nx6_A* 1pu2_A* 1q2x_A*
Length = 367
Score = 29.5 bits (67), Expect = 0.56
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 MKKIAIFGATGMTG 14
M+ + G GM G
Sbjct: 1 MQNVGFIGWRGMVG 14
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.63
Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 52/176 (29%)
Query: 33 RDPQRLPSEYHSKVEIIQGDVLKLAD-----VKKAIEGKDGLEVCTLLRDPQRL-PSEYH 86
R P + Y + + + D A ++ ++ + L L P++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---------LELRPAKN- 152
Query: 87 SKVEIIQG-----------DVLKLADVKKAIEGKDGVVVALGTRNDLSPTTVMSEGMKNI 135
V +I G DV V+ ++ K + L +N SP TV+ E ++ +
Sbjct: 153 --V-LIDGVLGSGKTWVALDVCLSYKVQCKMDFK---IFWLNLKNCNSPETVL-EMLQKL 205
Query: 136 VTAMKEYNVSVVSVCLSAFLFYEPSKVPPMFHNVND---------DHQRMYNVLKD 182
+ + S S + H++ ++ VL +
Sbjct: 206 LYQIDPNWTSRSD---------HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
essential gene, amino-acid biosynthesis, arginine
biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
flexneri} PDB: 2g17_A
Length = 337
Score = 29.4 bits (67), Expect = 0.70
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 1 MKKIAIFGATGMTGL 15
M I GA+G G
Sbjct: 4 MLNTLIVGASGYAGA 18
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 29.2 bits (66), Expect = 0.75
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 79 QRLPSEYHSKVEIIQGDVLKLADVKKAIE------GK-DGVVVALGTRNDLSPTTVMSE 130
++L +Y + + GD+ + + +K+ + GK D +V G + +
Sbjct: 42 KKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDV 100
Score = 28.8 bits (65), Expect = 0.95
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 1 MKKIAIF-GATGMTGLCSLEAALKQG--LEVCTLLRDP---QRLPSEYHSKVEIIQGDVL 54
M K+ + G + G ++ V + R ++L +Y + + GD+
Sbjct: 1 MGKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDIT 60
Query: 55 KLADVKKAIE 64
+ + +K+ +
Sbjct: 61 EDSVLKQLVN 70
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 29.2 bits (66), Expect = 0.78
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 51/161 (31%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEY-------HSKVEIIQGDV 53
+AIFG+TG G L + +R+ ++ + + + V +
Sbjct: 77 PINVAIFGSTGSIG--------TNALNI---IRECNKIENVFNVKALYVNKSVNELYEQA 125
Query: 54 LK-------LADVKKAIEGKDGLEVCTLLRDPQRLPSEYHSKVEIIQGD--VLKLADVKK 104
+ + D E L++ + + K I+ GD + ++
Sbjct: 126 REFLPEYLCIHDKSVYEE----------LKE--LVKNIKDYKPIILCGDEGMKEIC---- 169
Query: 105 AIEGKDGVVVAL----GTRNDLSPTTVMSEGMKNIVTAMKE 141
+ D +V+ + G L T K + A KE
Sbjct: 170 SSNSIDKIVIGIDSFQG----LYSTMYAIMNNKIVALANKE 206
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 29.3 bits (64), Expect = 0.78
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 1 MKKIAIFGATGMTGL-CS--LEAALKQGLEV 28
M ++ I GA GMTG C+ L L +
Sbjct: 1 MAQVLIVGA-GMTGSLCAALLRRQTSGPLYL 30
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 29.2 bits (66), Expect = 0.80
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 84 EYHSKVEIIQGDVLKLADVKKAIEGKDGVV 113
H V + + A + + D V
Sbjct: 75 PDHPAVRFSETSITDDALLASLQDEYDYVF 104
Score = 26.5 bits (59), Expect = 5.3
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 41 EYHSKVEIIQGDVLKLADVKKAIEGKD 67
H V + + A + + D
Sbjct: 75 PDHPAVRFSETSITDDALLASLQDEYD 101
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 28.9 bits (65), Expect = 0.83
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 14/77 (18%)
Query: 1 MKKIA-IFGA-TGMTGLCSLEAALKQGLEVCTLLRDPQR-----------LPSEYHSKVE 47
KKI I GA +G G + EA G V +RD + +
Sbjct: 4 SKKIILITGASSGF-GRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLR 62
Query: 48 IIQGDVLKLADVKKAIE 64
++ DV V +AI+
Sbjct: 63 TLELDVQSQVSVDRAID 79
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 28.6 bits (65), Expect = 1.1
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRD 34
+++ I GA G G E + ++ +
Sbjct: 5 KERVIITGANGQLGKQLQEELNPEEYDIYPFDKK 38
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 28.3 bits (64), Expect = 1.1
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLP---SEYHSKVEIIQGDVLKLA 57
+ I + GA G +++G +V + R QRL + V I D+
Sbjct: 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHE 62
Query: 58 DVKKAIE 64
DV A
Sbjct: 63 DVDVAFA 69
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 74 LLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV 113
L + + S + IQGD+ L D A G D V+
Sbjct: 68 LDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVL 107
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.4 bits (64), Expect = 1.4
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 8 GATGMTGLCSLEAALKQGLEVCTLLRDPQR-------LPSEYHSKVEIIQGDVLKLADVK 60
G TG ++ L++G V T +RDP L + ++I + D+ +
Sbjct: 16 GGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFE 75
Query: 61 KAIEGKDG 68
I G D
Sbjct: 76 APIAGCDF 83
Score = 25.7 bits (57), Expect = 9.4
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 27/91 (29%)
Query: 68 GLEVCTLLRDPQR-------LPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV-VALGTR 119
G V T +RDP L + ++I + D+ + I G D V VA
Sbjct: 33 GYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA---- 88
Query: 120 NDLSPTTVMS------------EGMKNIVTA 138
+P S +G+ N++ A
Sbjct: 89 ---TPVHFASEDPENDMIKPAIQGVVNVMKA 116
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase;
HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1
c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A
1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A*
3anm_A* 3anl_A* 3ann_A* 3iie_A
Length = 406
Score = 28.3 bits (64), Expect = 1.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 1 MKKIAIFGATG 11
MK++ I G+TG
Sbjct: 9 MKQLTILGSTG 19
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 28.1 bits (63), Expect = 1.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 36 QRLPSEYHSKVEIIQGDVLKL 56
+R E ++ +E+ +GD +K
Sbjct: 82 KRCLYEGYNNLEVYEGDAIKT 102
Score = 28.1 bits (63), Expect = 1.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 79 QRLPSEYHSKVEIIQGDVLKL 99
+R E ++ +E+ +GD +K
Sbjct: 82 KRCLYEGYNNLEVYEGDAIKT 102
>1w27_A Phenylalanine ammonia-lyase 1; phenylpropanoid metabolism, MIO;
HET: MDO; 1.7A {Petroselinum crispum} SCOP: a.127.1.2
Length = 714
Score = 28.2 bits (63), Expect = 1.8
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 72 CTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK-AIEGKDGVVVAL 116
+ L + +++ +EY V + G+ L ++ V + GV V L
Sbjct: 39 GSHLDEVKKMVAEYRKPVVKLGGETLTISQVAAISARDGSGVTVEL 84
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; 1.80A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 27.9 bits (63), Expect = 1.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 1 MKKIAIFGATGMTGL 15
M + I GATG TGL
Sbjct: 13 MIRAGIIGATGYTGL 27
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer,
rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium
tuberculosis} PDB: 2i3a_A* 2i3g_A
Length = 352
Score = 27.9 bits (63), Expect = 1.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MKKIAIFGATGMTGL 15
K+A+ GA+G G
Sbjct: 9 ATKVAVAGASGYAGG 23
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 27.3 bits (61), Expect = 2.5
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 93 QGDVLKLADVKKAIEGKDGVVVALGTRNDLSPTTVMSEGMKNIVTAMKEYNVSVVS 148
GD L DV + + + +G + E + I + +V V+
Sbjct: 119 FGDPLGYEDVIPEADREGVIRYVIGVGDAFRSEKSRQE-LNTIASKPPRDHVFQVN 173
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 27.2 bits (61), Expect = 2.5
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 12/71 (16%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
KI + GA+G G +++ L++ EV T R + D+ + +K
Sbjct: 3 AMKILLIGASGTLGS-AVKERLEKKAEVITAGRHS-----------GDVTVDITNIDSIK 50
Query: 61 KAIEGKDGLEV 71
K E ++
Sbjct: 51 KMYEQVGKVDA 61
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 27.6 bits (62), Expect = 2.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 74 LLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVV 113
L + +E S+ I+GD+ L ++ ++G D V+
Sbjct: 66 LDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVL 105
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 27.3 bits (60), Expect = 3.0
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 17/97 (17%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQ--------RLPSEYHSKVEIIQGD 52
K A+ G G G +G V D Q +
Sbjct: 4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHP 62
Query: 53 VLKLADVKKAIEGKDGLEVCTLLRDPQRLPSEYHSKV 89
L +D+ A++ D + + P+ +H+ +
Sbjct: 63 DLLTSDIGLAVKDADVILIVV--------PAIHHASI 91
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 27.2 bits (61), Expect = 3.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 84 EYHSKVEIIQGDVLKLADVKKAIEGKDGVVVA 115
E ++ +EII GD LK+ D+ K K VVA
Sbjct: 93 ELYNNIEIIWGDALKV-DLNKLDFNK---VVA 120
Score = 26.4 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 41 EYHSKVEIIQGDVLKLADVKKAIEGK 66
E ++ +EII GD LK+ D+ K K
Sbjct: 93 ELYNNIEIIWGDALKV-DLNKLDFNK 117
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 27.1 bits (61), Expect = 3.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 95 DVLKLAD-VKKAIEGKDGVVVALGT 118
L LA + + DG V+ GT
Sbjct: 65 VWLTLAKKINTDCDKTDGFVITHGT 89
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 27.3 bits (61), Expect = 3.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1 MKKIAIFGATGMTG 14
+KK + GATG G
Sbjct: 19 VKKAGVLGATGSVG 32
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 26.9 bits (60), Expect = 3.5
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 1 MKKIAIFGATGMTGLC---SLEAALKQGLEVCTLLRDPQRLP-----SEYHSKVEIIQGD 52
M I I G GL +L + + T R+ ++ ++ HS + I++ D
Sbjct: 21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEID 80
Query: 53 VLKLADVKKAIE 64
+ K +
Sbjct: 81 LRNFDAYDKLVA 92
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics, riken structur
genomics/proteomics initiative; 2.01A {Thermus
thermophilus}
Length = 345
Score = 27.1 bits (61), Expect = 3.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MKKIAIFGATGMTGL 15
K ++I GA+G G
Sbjct: 4 KKTLSIVGASGYAGG 18
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 26.7 bits (60), Expect = 3.9
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 84 EYHSKVEIIQGDVLKLADVKKAIE--GKDGVVVA 115
K+ I Q D + + + E G+ V
Sbjct: 64 FLGPKLTIYQQDAMTF-NFGELAEKMGQPLRVFG 96
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 26.7 bits (60), Expect = 4.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 37 RLPSEYHSKVEIIQGDVLKL 56
L S ++E+I D K
Sbjct: 69 NLKSIGDERLEVINEDASKF 88
Score = 26.7 bits (60), Expect = 4.0
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 80 RLPSEYHSKVEIIQGDVLKL 99
L S ++E+I D K
Sbjct: 69 NLKSIGDERLEVINEDASKF 88
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 26.8 bits (60), Expect = 4.2
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 8 GATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIE 64
GA+G+ GL + + L G +V L + + ++ + DV A V A++
Sbjct: 17 GASGL-GLATTKRLLDAGAQVVVLDIRGEDVVADLGDRARFAAADVTDEAAVASALD 72
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 26.8 bits (60), Expect = 4.5
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPS---EYHSKVEIIQGDVLKLA 57
M I I GA+ G + +G R +L + + V D+
Sbjct: 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQ 60
Query: 58 DVKKAIEGKDG 68
+V++ E D
Sbjct: 61 EVEQLFEQLDS 71
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 26.9 bits (59), Expect = 4.9
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 1 MKKIAIFGATGMTGLCS---LEAALKQGLE 27
+IAI GA G +G+ ++A ++G E
Sbjct: 2 ATRIAILGA-GPSGMAQLRAFQSAQEKGAE 30
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 26.9 bits (60), Expect = 4.9
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 8 GATGMTGLCSLEAALKQGLEVCTLLRDPQR-------LPSEYHSKVE-IIQGDVLKLADV 59
GA G +E L+ G +V R + ++Y + E + D+LK
Sbjct: 18 GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAY 77
Query: 60 KKAIEGKDG 68
+ I+G G
Sbjct: 78 DEVIKGAAG 86
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 26.8 bits (60), Expect = 5.2
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 12/62 (19%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
I +FG TG G L+ +L + L + GD V +
Sbjct: 2 NILLFGKTGQVGWE-LQRSLAPVGNLIALDVHSKEFC-----------GDFSNPKGVAET 49
Query: 63 IE 64
+
Sbjct: 50 VR 51
>4e4y_A Short chain dehydrogenase family protein; structural genomics,
the center for structural genomics of I diseases,
csgid, niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 26.3 bits (59), Expect = 5.4
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 3 KIAIF--GATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
+ G+ G+ G +E L+ + Q +E ++ I+ D+ K D+
Sbjct: 5 ANYLVTGGSKGI-GKAVVELLLQNKNHTVINIDIQQSFSAE---NLKFIKADLTKQQDIT 60
Query: 61 KAIE 64
++
Sbjct: 61 NVLD 64
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 26.4 bits (59), Expect = 5.9
Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 51/130 (39%)
Query: 3 KIAIFGATGMTG-LCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKK 61
K+A+ GA G G +L + G L L D+
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPS------------------------GSELSLYDIAP 37
Query: 62 AIEGK--DGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALG-- 117
G D + T K++ G+ D A+EG D V+++ G
Sbjct: 38 VTPGVAVDLSHIPT------------AVKIKGFSGE-----DATPALEGADVVLISAGVA 80
Query: 118 -----TRNDL 122
R+DL
Sbjct: 81 RKPGMDRSDL 90
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural
genomics, protein structure initiative, CENT eukaryotic
structural genomics; 2.19A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Length = 359
Score = 26.3 bits (59), Expect = 5.9
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 1 MKKIAIFGATGMTGL 15
+I + GA+G TG
Sbjct: 16 DIRIGLLGASGYTGA 30
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 26.1 bits (58), Expect = 6.8
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 1 MKKIAIFGAT-GMTGLCSLEAALKQGLEVCTLL--RDPQR---LPSEYHSKVEIIQGDVL 54
+ + GA G+ GL ++ +K + RD ++ L S S+V ++ V
Sbjct: 3 PGSVVVTGANRGI-GLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVT 61
Query: 55 KLADVKKAIE 64
+ +
Sbjct: 62 CDKSLDTFVS 71
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 26.6 bits (57), Expect = 7.2
Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 11/90 (12%)
Query: 99 LADVKKAIEGKDGVVVALGTRNDLSPTTVMSEGMKNIVTAMKEYNVSVVSVCLSAFLFYE 158
L + K + GKD + + L R+ G I E + L L E
Sbjct: 556 LNNKAKNVPGKDTLAIGLLKRS----------GSYYISLVGWELIRVFYNSELRKKLLEE 605
Query: 159 PSKVPPMF-HNVNDDHQRMYNVLKDSGLNY 187
V F ++V + V D L +
Sbjct: 606 KGGVGKRFIYHVLREVDTWPKVGIDEMLKF 635
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 26.1 bits (58), Expect = 7.6
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 54/151 (35%)
Query: 2 KKIAIFGATGMTG-LCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVK 60
K+AI GA G G ++ + VL L DV
Sbjct: 9 FKVAILGAAGGIGQPLAMLMKMNP-------------------------LVSVLHLYDVV 43
Query: 61 KAIEGK--DGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKAIEGKDGVVVALG- 117
A G D + T + V G ++ A+ G D ++V G
Sbjct: 44 NA-PGVTADISHMDT------------GAVVRGFLGQ----QQLEAALTGMDLIIVPAGV 86
Query: 118 ------TRNDLSPTTVMSEGMKNIVTAMKEY 142
TR+DL + +K + + +
Sbjct: 87 PRKPGMTRDDLFKIN--AGIVKTLCEGIAKC 115
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 25.9 bits (58), Expect = 8.2
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 1 MKKIAIFGATGMTGLCSLEAALKQGLEVCTLLRD 34
KI I GA G G + + +EV
Sbjct: 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ 45
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 26.0 bits (58), Expect = 8.2
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 3 KIAIFGATGMTGLCSLEAALKQGLEVCTLLRDPQRLPSEYHSKVEIIQGDVLKLADVKKA 62
+ I GA+G G+ L L + EV + + + D+ ++
Sbjct: 2 RTLITGASGQLGIE-LSRLLSERHEVIKVYNSSEIQGGY--------KLDLTDFPRLEDF 52
Query: 63 IE 64
I
Sbjct: 53 II 54
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 26.0 bits (58), Expect = 9.3
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 1 MK-KIAIFGATGMTG 14
MK K+ + GATG G
Sbjct: 7 MKIKVGVLGATGSVG 21
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 25.6 bits (57), Expect = 9.7
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 1 MK---KIAIF--GATGMTGLCSLEAALKQGLEVCTLLRDP---QRLPSEYHSKVEIIQGD 52
MK ++A+ GA+G+ G ++ + +G V L + + L + + GD
Sbjct: 1 MKLTGEVALITGGASGL-GRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGD 59
Query: 53 VLKLADVKKAIE 64
V L D K+A E
Sbjct: 60 VRSLQDQKRAAE 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,893,705
Number of extensions: 173455
Number of successful extensions: 956
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 167
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)