BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3629
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 63/363 (17%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESS 177
+T DF R L+ P L + + Q +
Sbjct: 447 VTMDDF------------------------RWALSQSNP--SALRETVVEVPQVTWEDIG 480
Query: 178 GLVSVLLEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRG 237
GL V E+ + L + + D F ++ P + +F Y P
Sbjct: 481 GLEDVKRELQE-------LVQYPVEHPDKF------LKFGMTPSKGVLF---YGPP---- 520
Query: 238 FIGFSLLQRKWAELSLHQDIDVK-----PFFFNPKNTSEFLCTIILEAGPNSGLHIIIFD 292
G +LL + A I +K +F SE I + + ++ FD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFG---ESEANVREIFDKARQAAPCVLFFD 577
Query: 293 EIDAICKARGTAGGNTG-VHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPG 351
E+D+I KARG G+ G D V+NQ+L++MDG+ N+ +IG TNR D+ID A+LRPG
Sbjct: 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 637
Query: 352 RLE 354
RL+
Sbjct: 638 RLD 640
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+ N+ +IG TNR D+ID A+LRPGRL+ + I LP+E RV IL+ + K
Sbjct: 608 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK---- 663
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCA 95
+A DV+L+ LA +T FSGA+L + + A A
Sbjct: 664 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337
E + II DE+DAI R G V +V+QLL+ MDG+++ +++V+ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAAT 347
Query: 338 NRRDMIDEALLRPGRLE 354
NR + ID AL R GR +
Sbjct: 348 NRPNSIDPALRRFGRFD 364
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 170/363 (46%), Gaps = 63/363 (17%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESS 177
+T DF R L+ P L + + Q +
Sbjct: 447 VTMDDF------------------------RWALSQSNP--SALRETVVEVPQVTWEDIG 480
Query: 178 GLVSVLLEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRG 237
GL V E+ + L + + D F ++ P + +F Y P
Sbjct: 481 GLEDVKRELQE-------LVQYPVEHPDKF------LKFGMTPSKGVLF---YGPP---- 520
Query: 238 FIGFSLLQRKWAELSLHQDIDVK-----PFFFNPKNTSEFLCTIILEAGPNSGLHIIIFD 292
G +LL + A I +K +F SE I + + ++ FD
Sbjct: 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFG---ESEANVREIFDKARQAAPCVLFFD 577
Query: 293 EIDAICKARGTAGGNTG-VHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPG 351
E+D+I KARG G+ G D V+NQ+L++MDG+ N+ +IG TNR D+ID A+LRPG
Sbjct: 578 ELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 637
Query: 352 RLE 354
RL+
Sbjct: 638 RLD 640
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+ N+ +IG TNR D+ID A+LRPGRL+ + I LP+E RV IL+ + K
Sbjct: 608 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK---- 663
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCA 95
+A DV+L+ LA +T FSGA+L + + A A
Sbjct: 664 SPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLA 698
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337
E + II DE+DAI R G V +V+QLL+ MDG+++ +++V+ T
Sbjct: 290 FEEAEKNAPAIIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAAT 347
Query: 338 NRRDMIDEALLRPGRLE 354
NR + ID AL R GR +
Sbjct: 348 NRPNSIDPALRRFGRFD 364
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 66/99 (66%), Gaps = 4/99 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG + ++ +IG TNR D++D A+LRPGR + +E+ P+E GR++IL+IHT KM
Sbjct: 148 MDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM--- 204
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRL 99
LA+DVNL+E+A +T+ GAEL+ + A A+ L
Sbjct: 205 -NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKARGTA--GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II DEIDAI R A GG+ V T++ QLL++MDG + ++ +IG TNR D++D
Sbjct: 113 IIFIDEIDAIAAKRTDALTGGDREVQRTLM-QLLAEMDGFDARGDVKIIGATNRPDILDP 171
Query: 346 ALLRPGRLE 354
A+LRPGR +
Sbjct: 172 AILRPGRFD 180
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
+DG + + V+ TNR D++D ALLR GRL+ ++E LP+ED R QILQIH+ KM +
Sbjct: 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT- 370
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96
DD+N +ELA T F+GA+L+ + A A+
Sbjct: 371 ---DDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKAR--GTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II DE+DAI R G+ V T++ +LL+++DG + + V+ TNR D++D
Sbjct: 277 IIFIDELDAIGTKRFDSEKSGDREVQRTML-ELLNQLDGFSSDDRVKVLAATNRVDVLDP 335
Query: 346 ALLRPGRLE 354
ALLR GRL+
Sbjct: 336 ALLRSGRLD 344
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHAL 127
+T DF AL
Sbjct: 447 VTMDDFRWAL 456
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347
II DE+DAI R G V +V+QLL+ MDG+++ +++V+ TNR + ID AL
Sbjct: 300 IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357
Query: 348 LRPGRLE 354
R GR +
Sbjct: 358 RRFGRFD 364
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHAL 127
+T DF AL
Sbjct: 447 VTMDDFRWAL 456
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347
II DE+DAI R G V +V+QLL+ MDG+++ +++V+ TNR + ID AL
Sbjct: 300 IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357
Query: 348 LRPGRLE 354
R GR +
Sbjct: 358 RRFGRFD 364
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHAL 127
+T DF AL
Sbjct: 447 VTMDDFRWAL 456
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347
II DE+DAI R G V +V+QLL+ MDG+++ +++V+ TNR + ID AL
Sbjct: 300 IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357
Query: 348 LRPGRLE 354
R GR +
Sbjct: 358 RRFGRFD 364
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+++ +++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M
Sbjct: 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM--- 388
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNR---LIKATNKVEVDPQALEKLC 117
KLADDV+L+++A T GA+L L A A+ + LI ++ +D + + L
Sbjct: 389 -KLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET-IDAEVMNSLA 446
Query: 118 ITRADFLHAL 127
+T DF AL
Sbjct: 447 VTMDDFRWAL 456
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347
II DE+DAI R G V +V+QLL+ MDG+++ +++V+ TNR + ID AL
Sbjct: 300 IIFIDELDAIAPKREKTHGE--VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357
Query: 348 LRPGRLE 354
R GR +
Sbjct: 358 RRFGRFD 364
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+ N+ +IG TNR D+ID A+LRPGRL+ + I LP+E RV IL+ + K
Sbjct: 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK---- 201
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAA 91
+A DV+L+ LA +T FSGA+L + + A
Sbjct: 202 SPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTG-VHDTVVNQLLSKMDGVERLNNILVIG 335
I + + ++ FDE+D+I KARG G+ G D V+NQ+L++MDG+ N+ +IG
Sbjct: 100 IFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 159
Query: 336 MTNRRDMIDEALLRPGRLE 354
TNR D+ID A+LRPGRL+
Sbjct: 160 ATNRPDIIDPAILRPGRLD 178
>pdb|1QDN|A Chain A, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|B Chain B, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
pdb|1QDN|C Chain C, Amino Terminal Domain Of The N-Ethylmaleimide Sensitive
Fusion Protein (Nsf)
Length = 204
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 184 LEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSL 243
++ + PTDELSLSN A ++ D+ + +H+ V T P YIFTL P V G + FSL
Sbjct: 7 MQAARCPTDELSLSNCAVVSEKDY-QSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSL 65
Query: 244 LQRKWAELSLHQDIDVKPFFFN 265
QRKWA LS+ Q+I+V + F+
Sbjct: 66 PQRKWAGLSIGQEIEVALYSFD 87
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG + I+V+ TNR D++D ALLRPGR + ++ + P+ GR +IL+IHT
Sbjct: 146 MDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN---- 201
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCA 95
K LA+DVNL+ +A T F GA+LE LV A A
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLA 236
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG GG + +NQLL +MDG + I+V+ TNR D++D A
Sbjct: 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 171 LLRPGRFD 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG + I+V+ TNR D++D ALLRPGR + ++ + P+ GR +IL+IHT
Sbjct: 146 MDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN---- 201
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCA 95
K LA+DVNL+ +A T F GA+LE LV A A
Sbjct: 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLA 236
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG GG + +NQLL +MDG + I+V+ TNR D++D A
Sbjct: 111 IVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPA 170
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 171 LLRPGRFD 178
>pdb|1QCS|A Chain A, N-Terminal Domain Of N-Ethylmaleimide Sensitive Factor
(Nsf)
Length = 211
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 185 EVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLL 244
+ + PTDELSLSN A ++ D+ + +H+ V T P YIFTL P V G + FSL
Sbjct: 11 QAARCPTDELSLSNCAVVSEKDY-QSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLP 69
Query: 245 QRKWAELSLHQDIDVKPFFFN 265
QRKWA LS+ Q+I+V + F+
Sbjct: 70 QRKWAGLSIGQEIEVALYSFD 90
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E+ I+V+ TNR D++D ALLRPGR + Q+ I P+ GR QIL+IH
Sbjct: 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----RG 225
Query: 61 KKLADDVNLKELAALTKNFSGAE 83
K LA+DV+L LA T F GA+
Sbjct: 226 KPLAEDVDLALLAKRTPGFVGAD 248
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG+ GG + +NQLL +MDG E+ I+V+ TNR D++D A
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 195 LLRPGRFD 202
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLN 329
SE + + NS +I FDE+DA+C R + TG VVNQLL++MDG+E
Sbjct: 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--SDRETGASVRVVNQLLTEMDGLEARQ 145
Query: 330 NILVIGMTNRRDMIDEALLRPGRLE 354
+ ++ TNR D+ID A+LRPGRL+
Sbjct: 146 QVFIMAATNRPDIIDPAILRPGRLD 170
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+E + ++ TNR D+ID A+LRPGRL+ + + LP R+ IL+ T K +
Sbjct: 138 MDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT-KNGTK 196
Query: 61 KKLADDVNLKELAALTK--NFSGAELEGLVRAAQSCAMNR 98
L DVNL+ +A + ++GA+L LVR A CA+ +
Sbjct: 197 PPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E I+VI TNR D++D ALLRPGR + Q+ + LP+ GR QIL++H ++
Sbjct: 142 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--- 198
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAA 91
LA D++ +A T FSGA+L LV A
Sbjct: 199 -PLAPDIDAAIIARGTPGFSGADLANLVNEA 228
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
II DEIDA+ + RG GG + +NQ+L +MDG E I+VI TNR D++D A
Sbjct: 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 166
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 167 LLRPGRFD 174
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E+ I+V+ TNR D++D ALLRPGR + Q+ I P+ GR QIL+IH
Sbjct: 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----RG 201
Query: 61 KKLADDVNLKELAALTKNFSGAE 83
K LA+DV+L LA T F GA+
Sbjct: 202 KPLAEDVDLALLAKRTPGFVGAD 224
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG+ GG + +NQLL +MDG E+ I+V+ TNR D++D A
Sbjct: 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 170
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 171 LLRPGRFD 178
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E+ I+V+ TNR D++D ALLRPGR + Q+ I P+ GR QIL+IH
Sbjct: 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----RG 216
Query: 61 KKLADDVNLKELAALTKNFSGAE 83
K LA+DV+L LA T F GA+
Sbjct: 217 KPLAEDVDLALLAKRTPGFVGAD 239
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG+ GG + +NQLL +MDG E+ I+V+ TNR D++D A
Sbjct: 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 186 LLRPGRFD 193
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E+ I+V+ TNR D++D ALLRPGR + Q+ I P+ GR QIL+IH
Sbjct: 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----RG 225
Query: 61 KKLADDVNLKELAALTKNFSGAE 83
K LA+DV+L LA T F GA+
Sbjct: 226 KPLAEDVDLALLAKRTPGFVGAD 248
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG+ GG + +NQLL +MDG E+ I+V+ TNR D++D A
Sbjct: 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 195 LLRPGRFD 202
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG + L +I TNR D +D ALLRPGRL+ ++EI LPNE GR++I +IHTAK+
Sbjct: 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV--- 368
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM---------NRLIKATNKV 106
K + + + ++ F+GA++ A A+ + L+KA KV
Sbjct: 369 -KKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKARGTAG--GNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II DE+DAI R + G + + T++ +LL++MDG + L +I TNR D +D
Sbjct: 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLM-ELLTQMDGFDNLGQTKIIMATNRPDTLDP 335
Query: 346 ALLRPGRLE 354
ALLRPGRL+
Sbjct: 336 ALLRPGRLD 344
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 121 ADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESSGLV 180
DFL +LE DIKPAFG++ E ++ GI+ WG PV L+ G + +QQ+K+++ + LV
Sbjct: 5 GDFLASLEQDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLV 64
Query: 181 SVLLE 185
SVLLE
Sbjct: 65 SVLLE 69
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 5/96 (5%)
Query: 1 MDGVERLNN-ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRS 59
MDG N ++V+ TNR +++D AL+RPGR + Q+ + P+ +GRV+IL++H +
Sbjct: 142 MDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV-- 199
Query: 60 YKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCA 95
KLA+DVNL+E+A LT +GA+L ++ A A
Sbjct: 200 --KLANDVNLQEVAKLTAGLAGADLANIINEAALLA 233
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTG--VHDTVVNQLLSKMDGVERLNN-ILV 333
+ E II DEIDAI K+R G +G + +NQLL++MDG N ++V
Sbjct: 95 LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIV 154
Query: 334 IGMTNRRDMIDEALLRPGRLE 354
+ TNR +++D AL+RPGR +
Sbjct: 155 LAATNRPEILDPALMRPGRFD 175
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
+DG E NI +I TNR D++D ALLRPGR++ ++E P+ R +IL+IH+ KM
Sbjct: 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM--- 335
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96
L +NL+++A SGA+++G+ A A+
Sbjct: 336 -NLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYAL 370
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKAR--GTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II DEID+I R G+ GG++ V T++ +LL+++DG E NI +I TNR D++D
Sbjct: 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTML-ELLNQLDGFETSKNIKIIMATNRLDILDP 302
Query: 346 ALLRPGRLE 354
ALLRPGR++
Sbjct: 303 ALLRPGRID 311
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
+DG + NI V+ TNR + +D ALLRPGR++ ++E SLP+ +GR I +IH+ M
Sbjct: 340 LDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM--- 396
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITR 120
+ + + ++ L N +GAEL + A A I+A KV T
Sbjct: 397 -SVERGIRWELISRLCPNSTGAELRSVCTEAGMFA----IRARRKV-----------ATE 440
Query: 121 ADFLHALETDIK--PAFGSSDESLEH 144
DFL A++ I F S+ +++
Sbjct: 441 KDFLKAVDKVISGYKKFSSTSRYMQY 466
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKAR--GTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II FDEIDA+ AR AGG+ V T++ +L++++DG + NI V+ TNR + +D
Sbjct: 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTML-ELITQLDGFDPRGNIKVMFATNRPNTLDP 363
Query: 346 ALLRPGRLE 354
ALLRPGR++
Sbjct: 364 ALLRPGRID 372
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 130 DIKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLE 185
DIKPAFG++ E ++ GI+ WG PV L+ G + +QQ+K+++ + LVSVLLE
Sbjct: 15 DIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLE 70
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 288 IIIFDEIDAICKARGT--AGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
I+ DEIDA+ K R T +G + + +NQLL +MDG+ ++++V+ TNR D++D
Sbjct: 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160
Query: 346 ALLRPGRLE 354
AL+RPGRL+
Sbjct: 161 ALMRPGRLD 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+ ++++V+ TNR D++D AL+RPGRL+ + I LP R +I + H ++
Sbjct: 137 MDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT 196
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAA 91
+ + + LA LT FSGA++ + A
Sbjct: 197 Q--SSTFYSQRLAELTPGFSGADIANICNEA 225
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
+DG + ++ VI TN+ + +D AL+RPGR++ ++ P+ + +IL IHT+KM
Sbjct: 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-- 370
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96
L++DVNL+ L + SGA+++ + A A+
Sbjct: 371 --LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 273 LCTIILEAGPNSGLHIIIFDEIDAICKAR--GTAGGNTGVHDTVVNQLLSKMDGVERLNN 330
LC I + + I+ DEIDAI R +GG + T++ +LL+++DG + +
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDDRGD 321
Query: 331 ILVIGMTNRRDMIDEALLRPGRLE 354
+ VI TN+ + +D AL+RPGR++
Sbjct: 322 VKVIMATNKIETLDPALIRPGRID 345
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 288 IIIFDEIDAICKARGTA--GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
II DE+D+I R A G + V ++ +LL++MDG ++ N+ VI TNR D +D
Sbjct: 268 IIFIDEVDSIATKRFDAQTGSDREVQRILI-ELLTQMDGFDQSTNVKVIMATNRADTLDP 326
Query: 346 ALLRPGRLE 354
ALLRPGRL+
Sbjct: 327 ALLRPGRLD 335
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEI-SLPNEDGRVQILQIHTAKMRS 59
MDG ++ N+ VI TNR D +D ALLRPGRL+ ++E SL + R I +KM
Sbjct: 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-- 360
Query: 60 YKKLADDVNLKELAALTKNFSGAELEGLVRAA--QSCAMNRLI 100
LA + +L L + SGA + +++ A ++ NR +
Sbjct: 361 --SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYV 401
>pdb|1CR5|A Chain A, N-Terminal Domain Of Sec18p
pdb|1CR5|B Chain B, N-Terminal Domain Of Sec18p
pdb|1CR5|C Chain C, N-Terminal Domain Of Sec18p
Length = 189
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 184 LEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSL 243
L+V P + +L+N AA + +DF + I ++FT +S D+ G IGF+
Sbjct: 8 LKVSNCPNNSYALANVAAVSPNDFPNNIYII-----IDNLFVFTTRHSNDIPPGTIGFNG 62
Query: 244 LQRKWAELSLHQDIDVKPF-FFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARG 302
QR W SL+QD+ K F F +L +I +ID +ARG
Sbjct: 63 NQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSI----------------DIDISFRARG 106
Query: 303 TAGGNTGVHDTVVNQLL 319
A D + Q +
Sbjct: 107 KAVSTVFDQDELAKQFV 123
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 13/96 (13%)
Query: 1 MDGVERLNN--ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMR 58
DGV+ + +LV+G TNR +DEA+LR R ++ +SLPNE+ R+ +L+ K
Sbjct: 242 FDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG 299
Query: 59 S---YKKLADDVNLKELAALTKNFSGAELEGLVRAA 91
S K+LA +LA +T +SG++L L + A
Sbjct: 300 SPLTQKELA------QLARMTDGYSGSDLTALAKDA 329
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 288 IIIFDEIDAI-CKARGTAGGNTGVHDT---VVNQLLSKMDGVERLNN--ILVIGMTNRRD 341
II D++D++ C+ R G HD + + L + DGV+ + +LV+G TNR
Sbjct: 210 IIFIDQVDSLLCERR------EGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ 263
Query: 342 MIDEALLR 349
+DEA+LR
Sbjct: 264 ELDEAVLR 271
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 1 MDGVERLNN-ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRS 59
M GV N+ ILV+G TN ++D A+ R R E ++ I LP R + ++H ++
Sbjct: 140 MQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN 197
Query: 60 YKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATN 104
AD +EL T +SGA++ +VR A + ++ AT+
Sbjct: 198 SLTEAD---FRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLN 329
SE L + + + II DEID++C +R + + + + L +M GV N
Sbjct: 90 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSR--SENESEAARRIKTEFLVQMQGVGVDN 147
Query: 330 N-ILVIGMTNRRDMIDEALLR 349
+ ILV+G TN ++D A+ R
Sbjct: 148 DGILVLGATNIPWVLDSAIRR 168
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDV 67
+ ILV+G TNR IDEA R RL ++ I LP R QI+ M + +
Sbjct: 220 DRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIV---INLMSKEQCCLSEE 274
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
++++ + FSGA++ L R A S R ++ + + P + I DF +A
Sbjct: 275 EIEQIVQQSDAFSGADMTQLCREA-SLGPIRSLQTADIATITPDQVRP--IAYIDFENAF 331
Query: 128 ETDIKPAFGSSD 139
T ++P+ D
Sbjct: 332 RT-VRPSVSPKD 342
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDT---VVNQLLSKMDGV--ERLNNILVIGMTNRRDM 342
+I DEID++ RG G H++ + + L ++DG + ILV+G TNR
Sbjct: 179 VIFIDEIDSLLSQRGD-----GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233
Query: 343 IDEALLR 349
IDEA R
Sbjct: 234 IDEAARR 240
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 1 MDGVERLNN-ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRS 59
M GV N+ ILV+G TN ++D A+ R R E ++ I LP R + ++H ++
Sbjct: 262 MQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN 319
Query: 60 YKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEV-DPQALEKLCI 118
AD +EL T +SGA++ +VR A + ++ AT+ +V P + CI
Sbjct: 320 SLTEAD---FQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCI 376
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLN 329
SE L + + + II DEID++C +R + + + L +M GV N
Sbjct: 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDN 269
Query: 330 N-ILVIGMTNRRDMIDEALLR 349
+ ILV+G TN ++D A+ R
Sbjct: 270 DGILVLGATNIPWVLDSAIRR 290
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory
Subunit 8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 41 PNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96
PNE+ R+ IL+IH+ KM L +NL+++A L SGAE++G+ A A+
Sbjct: 11 PNEEARLDILKIHSRKM----NLTRGINLRKIAELMPGASGAEVKGVCTEAGMYAL 62
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDV 67
+ I+V+ TNR +DEA LR R ++ +SLP+E R +L K S D
Sbjct: 158 DRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSP---LDTE 212
Query: 68 NLKELAALTKNFSGAELEGLVRAA 91
L+ LA +T +SG++L L + A
Sbjct: 213 ALRRLAKITDGYSGSDLTALAKDA 236
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome
Regulatory Subunit 8 From Homo Sapiens. Northeast
Structural Genomics Consortium Target Id Hr3102a
Length = 78
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 41 PNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96
PNE+ R+ IL+IH+ K L +NL+++A L SGAE++G+ A A+
Sbjct: 3 PNEEARLDILKIHSRKX----NLTRGINLRKIAELXPGASGAEVKGVCTEAGXYAL 54
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 10 ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNL 69
+LV+G TN +D A+ R R E ++ I LP+ R + +I+ S D
Sbjct: 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKED---Y 242
Query: 70 KELAALTKNFSGAELEGLVRAAQSCAMNRLIKATN 104
+ L A+T+ +SG+++ +V+ A + ++ AT+
Sbjct: 243 RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 277
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDV 67
+LV+G TN +D A+ R R E ++ I LP+ R + +I+ D
Sbjct: 153 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED-- 208
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATN 104
+ L A+T+ +SG+++ +V+ A + ++ AT+
Sbjct: 209 -YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDV 67
+LV+G TN +D A+ R R E ++ I LP+ R + +I+ D
Sbjct: 162 QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED-- 217
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATN 104
+ L A+T+ +SG+++ +V+ A + ++ AT+
Sbjct: 218 -YRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 253
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV-ERLNNILVIGMTNRRDMIDEA 346
II DE+DA+ RG G + + +LL +M+GV +LV+G TN +D A
Sbjct: 122 IIFIDEVDALTGTRGE--GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSA 179
Query: 347 LLR 349
+ R
Sbjct: 180 IRR 182
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 10 ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNL 69
+LV+G TN +D A+ R R E ++ I LP+ R + +I+ D
Sbjct: 173 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKED---Y 227
Query: 70 KELAALTKNFSGAELEGLVRAAQSCAMNRLIKATN 104
+ L A+T+ +SG+++ +V+ A + ++ AT+
Sbjct: 228 RTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 262
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 39 SLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL--------VRA 90
SLP+ +GR I +IH+ M + + + ++ L N +GAEL + +RA
Sbjct: 6 SLPDLEGRANIFRIHSKSM----SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 61
Query: 91 AQSCAMNR-LIKATNKV 106
+ A + +KA +KV
Sbjct: 62 RRKVATEKDFLKAVDKV 78
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 107 EVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRG-ILNWGTPVQECLEAGR 165
E+ +E L ITR D L L D+ P G + FL RG L TP + L R
Sbjct: 109 EISDALIELLTITRWDELDYLVIDMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVR 168
Query: 166 IFIQQSKD 173
I+ K+
Sbjct: 169 KLIELLKE 176
>pdb|4DNR|A Chain A, Crystal Structure Of The Cusba Heavy-metal Efflux Complex
From Escherichia Coli, E716f Mutant
Length = 1054
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 159 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 217
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 218 DASNQEAGGSSIELAE 233
>pdb|3T51|A Chain A, Crystal Structures Of The Pre-Extrusion And Extrusion
States Of The Cusba Adaptor-Transporter Complex
pdb|3T53|A Chain A, Crystal Structures Of The Extrusion State Of The Cusba
Adaptor- Transporter Complex
pdb|3T56|A Chain A, Crystal Structure Of The Pre-Extrusion State Of The Cusba
Adaptor- Transporter Complex
Length = 1054
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 159 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 217
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 218 DASNQEAGGSSIELAE 233
>pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli
Length = 1054
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 159 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 217
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 218 DASNQEAGGSSIELAE 233
>pdb|3K07|A Chain A, Crystal Structure Of Cusa
pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
Cusa
pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
Length = 1055
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 160 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 218
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 219 DASNQEAGGSSIELAE 234
>pdb|4DOP|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, R Mutant
Length = 1054
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 159 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 217
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 218 DASNQEAGGSSIELAE 233
>pdb|4DNT|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
From Escherichia Coli, Mutant
Length = 1054
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127
+L +L +L F EL+ + A+ ++ ++K +V +DPQ L + I+ A+ AL
Sbjct: 159 DLADLRSLQDWFLKYELKTIPDVAEVASVGGVVK-EYQVVIDPQRLAQYGISLAEVKSAL 217
Query: 128 ETDIKPAFGSSDESLE 143
+ + A GSS E E
Sbjct: 218 DASNQEAGGSSIELAE 233
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 289 IIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE 326
++FD +D I +A AG N G+ V N L + DG+
Sbjct: 395 VLFDNVDVIHQAYANAGNNPGIFGAVNNYLYAP-DGLS 431
>pdb|1YWF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb
pdb|2OZ5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb In Complex With The Specific
Inhibitor Omts
pdb|2OZ5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb In Complex With The Specific
Inhibitor Omts
Length = 296
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 14 GMTNRRDMIDEAL-LRPGRLELQMEISLPNEDGRVQILQI---HTAKMRSYKKLA 64
G N RD+ D A LRPGRL E+S ++ GR + ++ A +RS +++A
Sbjct: 28 GAWNFRDVADTATALRPGRLFRSSELSRLDDAGRATLRRLGITDVADLRSSREVA 82
>pdb|3N7Z|A Chain A, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|B Chain B, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|C Chain C, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|D Chain D, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|E Chain E, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|F Chain F, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
Length = 388
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 127 LETDIKPAFGSSDESLEHFLSRGILNWGTPVQECL 161
++T+IKP F +E FL + LNW QE +
Sbjct: 270 VKTEIKPYFXGRIVDVEQFLKQYELNWNNVQQEVI 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,234,648
Number of Sequences: 62578
Number of extensions: 413164
Number of successful extensions: 1007
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 94
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)