Query psy3629
Match_columns 358
No_of_seqs 246 out of 2215
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:36:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 6.3E-68 1.4E-72 515.7 18.8 296 1-356 317-673 (802)
2 KOG0730|consensus 100.0 3.8E-60 8.2E-65 467.0 17.0 275 1-356 312-596 (693)
3 KOG0736|consensus 100.0 3E-53 6.4E-58 422.0 15.3 293 6-357 530-838 (953)
4 KOG0735|consensus 100.0 3.1E-47 6.7E-52 376.1 16.8 282 7-358 539-831 (952)
5 TIGR01243 CDC48 AAA family ATP 100.0 2E-46 4.3E-51 393.8 20.0 298 1-357 306-617 (733)
6 KOG0741|consensus 100.0 1.2E-43 2.6E-48 341.3 13.4 293 1-344 361-655 (744)
7 COG0464 SpoVK ATPases of the A 100.0 6.8E-42 1.5E-46 345.4 18.9 285 1-357 111-405 (494)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-38 2.5E-43 296.0 6.5 159 151-357 154-317 (406)
9 KOG0734|consensus 100.0 7.9E-34 1.7E-38 273.9 6.9 134 175-358 333-467 (752)
10 KOG0733|consensus 100.0 3.3E-33 7.2E-38 273.2 6.0 137 169-355 213-354 (802)
11 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-31 3E-36 266.6 12.8 267 7-356 113-386 (489)
12 KOG0727|consensus 100.0 6.6E-32 1.4E-36 240.2 6.8 162 148-357 149-321 (408)
13 KOG0729|consensus 100.0 5.7E-31 1.2E-35 235.8 7.3 140 169-357 201-343 (435)
14 KOG0731|consensus 100.0 1.9E-30 4.1E-35 263.7 7.4 141 169-357 334-477 (774)
15 KOG0728|consensus 100.0 2.5E-30 5.5E-35 229.9 4.5 157 153-357 152-313 (404)
16 COG0465 HflB ATP-dependent Zn 100.0 6.4E-30 1.4E-34 255.8 7.8 140 171-358 175-316 (596)
17 KOG0738|consensus 100.0 2.8E-30 6.1E-35 241.7 4.8 157 148-356 206-376 (491)
18 KOG0741|consensus 100.0 2.1E-30 4.7E-35 250.0 3.4 142 169-357 246-396 (744)
19 KOG0739|consensus 100.0 6.4E-30 1.4E-34 232.1 5.0 158 146-356 125-293 (439)
20 PLN00020 ribulose bisphosphate 100.0 1.3E-29 2.9E-34 239.1 6.0 136 171-356 140-294 (413)
21 KOG0726|consensus 100.0 4.1E-29 8.9E-34 226.2 5.8 160 150-357 187-351 (440)
22 KOG0652|consensus 99.9 8E-29 1.7E-33 221.5 5.6 159 151-357 174-337 (424)
23 KOG0651|consensus 99.9 1.4E-27 3.1E-32 218.0 5.2 154 156-357 140-298 (388)
24 COG1222 RPT1 ATP-dependent 26S 99.9 1.4E-26 3.1E-31 215.6 11.8 110 1-129 282-391 (406)
25 COG1223 Predicted ATPase (AAA+ 99.9 2.9E-27 6.3E-32 211.3 4.1 137 168-355 140-277 (368)
26 TIGR03689 pup_AAA proteasome A 99.9 1.2E-26 2.7E-31 231.1 5.6 149 170-357 207-360 (512)
27 CHL00206 ycf2 Ycf2; Provisiona 99.9 4.2E-26 9.2E-31 246.6 5.9 154 172-357 1623-1799(2281)
28 PTZ00454 26S protease regulato 99.9 2.1E-25 4.6E-30 217.9 6.4 163 147-357 138-311 (398)
29 KOG0730|consensus 99.9 2.4E-24 5.3E-29 213.7 13.0 118 1-136 562-679 (693)
30 KOG0732|consensus 99.9 1.3E-24 2.8E-29 226.6 6.4 142 169-355 289-431 (1080)
31 PRK03992 proteasome-activating 99.9 1E-24 2.2E-29 213.6 4.0 138 171-356 157-296 (389)
32 TIGR01241 FtsH_fam ATP-depende 99.9 2E-24 4.4E-29 218.0 4.9 138 172-357 81-220 (495)
33 PTZ00361 26 proteosome regulat 99.9 9.4E-24 2E-28 207.8 4.3 139 171-357 209-349 (438)
34 KOG0738|consensus 99.9 1.5E-22 3.3E-27 190.0 10.3 128 1-136 340-474 (491)
35 CHL00176 ftsH cell division pr 99.9 4.6E-23 9.9E-28 211.7 5.4 139 171-357 208-348 (638)
36 KOG0737|consensus 99.9 4.1E-23 8.8E-28 193.4 4.1 126 177-354 125-253 (386)
37 PRK10733 hflB ATP-dependent me 99.9 8.7E-23 1.9E-27 211.3 5.2 133 177-357 183-317 (644)
38 KOG0732|consensus 99.9 7.7E-22 1.7E-26 206.0 11.2 265 1-301 398-669 (1080)
39 KOG0740|consensus 99.9 2.3E-22 5E-27 194.2 4.8 127 177-355 184-313 (428)
40 KOG0734|consensus 99.8 3.7E-21 8E-26 186.6 8.8 110 1-129 431-540 (752)
41 TIGR01242 26Sp45 26S proteasom 99.8 4E-21 8.6E-26 187.0 6.1 138 171-356 148-287 (364)
42 KOG0736|consensus 99.8 7.6E-20 1.6E-24 183.9 13.0 139 1-146 801-945 (953)
43 KOG0652|consensus 99.8 1.8E-20 4E-25 168.0 7.4 110 1-129 302-411 (424)
44 KOG0728|consensus 99.8 6.3E-20 1.4E-24 163.7 9.0 113 1-132 278-390 (404)
45 TIGR01243 CDC48 AAA family ATP 99.8 2.3E-19 5E-24 189.2 14.4 131 1-136 582-715 (733)
46 KOG0737|consensus 99.8 2.5E-19 5.5E-24 168.0 11.2 126 1-134 221-362 (386)
47 PF00004 AAA: ATPase family as 99.8 2.6E-20 5.7E-25 154.1 3.9 124 182-356 1-127 (132)
48 KOG0743|consensus 99.8 1.2E-19 2.6E-24 174.5 7.8 143 159-357 212-365 (457)
49 PTZ00454 26S protease regulato 99.8 4.8E-19 1E-23 173.2 12.2 110 1-129 276-385 (398)
50 KOG0731|consensus 99.8 4.7E-19 1E-23 180.9 10.7 111 1-129 442-552 (774)
51 KOG0727|consensus 99.8 1E-18 2.2E-23 156.2 9.5 115 1-134 286-400 (408)
52 KOG0726|consensus 99.8 3.1E-19 6.7E-24 162.3 5.6 110 1-129 316-425 (440)
53 CHL00195 ycf46 Ycf46; Provisio 99.8 3.7E-18 7.9E-23 170.6 13.7 120 7-145 358-477 (489)
54 PRK03992 proteasome-activating 99.8 3.3E-18 7.2E-23 167.6 12.5 115 1-135 262-376 (389)
55 KOG0729|consensus 99.8 4.4E-19 9.6E-24 159.6 5.6 110 1-129 308-417 (435)
56 COG0465 HflB ATP-dependent Zn 99.8 1.3E-18 2.8E-23 174.8 9.3 110 1-129 280-389 (596)
57 KOG0739|consensus 99.8 4.1E-19 8.9E-24 162.0 4.8 132 1-138 260-423 (439)
58 COG0464 SpoVK ATPases of the A 99.8 4.2E-18 9.1E-23 172.3 12.2 119 1-136 370-488 (494)
59 PTZ00361 26 proteosome regulat 99.7 6.5E-18 1.4E-22 166.5 10.8 110 1-129 314-423 (438)
60 PRK10733 hflB ATP-dependent me 99.7 1.2E-17 2.6E-22 173.2 11.5 113 1-133 282-394 (644)
61 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.5E-17 5.5E-22 179.4 12.1 112 1-129 1761-1876(2281)
62 KOG0735|consensus 99.7 2.4E-17 5.2E-22 164.7 10.9 102 1-106 795-896 (952)
63 TIGR01241 FtsH_fam ATP-depende 99.7 4.7E-17 1E-21 164.5 11.9 110 1-129 185-294 (495)
64 TIGR01242 26Sp45 26S proteasom 99.7 2.3E-16 4.9E-21 153.7 12.4 110 1-129 253-362 (364)
65 COG1223 Predicted ATPase (AAA+ 99.7 2.1E-16 4.6E-21 141.9 10.0 112 1-134 246-358 (368)
66 CHL00176 ftsH cell division pr 99.7 2.6E-16 5.6E-21 162.0 11.5 110 1-129 313-422 (638)
67 PRK11034 clpA ATP-dependent Cl 99.6 7.2E-16 1.6E-20 161.3 11.9 255 6-338 312-606 (758)
68 KOG0740|consensus 99.6 4.7E-16 1E-20 150.7 7.9 123 7-137 288-410 (428)
69 TIGR03689 pup_AAA proteasome A 99.6 2.3E-15 5E-20 150.6 12.8 123 1-134 325-482 (512)
70 KOG0744|consensus 99.6 4.1E-16 8.9E-21 143.9 1.5 136 180-356 178-321 (423)
71 KOG0651|consensus 99.6 9.6E-16 2.1E-20 140.8 2.5 110 1-129 263-372 (388)
72 TIGR02639 ClpA ATP-dependent C 99.6 2.7E-14 5.9E-19 150.5 13.6 256 7-340 309-604 (731)
73 TIGR03345 VI_ClpV1 type VI sec 99.3 2E-11 4.4E-16 130.2 14.0 72 6-80 313-390 (852)
74 PLN00020 ribulose bisphosphate 99.3 1.3E-11 2.8E-16 117.6 10.1 87 5-98 264-354 (413)
75 KOG0742|consensus 99.3 4.4E-12 9.6E-17 120.6 6.8 126 177-356 382-509 (630)
76 TIGR00763 lon ATP-dependent pr 99.3 3.7E-11 8E-16 127.6 13.1 126 181-357 349-488 (775)
77 COG0542 clpA ATP-binding subun 99.3 4.5E-11 9.8E-16 123.7 12.9 277 7-339 297-643 (786)
78 TIGR03346 chaperone_ClpB ATP-d 99.2 3.5E-10 7.7E-15 121.3 16.6 71 7-80 300-376 (852)
79 CHL00095 clpC Clp protease ATP 99.2 4.9E-10 1.1E-14 119.8 16.5 72 7-81 305-382 (821)
80 TIGR02881 spore_V_K stage V sp 99.1 5.5E-11 1.2E-15 110.6 6.0 124 179-355 42-171 (261)
81 TIGR02639 ClpA ATP-dependent C 99.1 1.6E-11 3.4E-16 129.8 2.2 133 178-356 202-340 (731)
82 TIGR02880 cbbX_cfxQ probable R 99.1 7E-11 1.5E-15 111.2 5.0 126 179-356 58-189 (284)
83 CHL00181 cbbX CbbX; Provisiona 99.1 7.3E-11 1.6E-15 111.2 4.6 125 180-356 60-190 (287)
84 PRK10865 protein disaggregatio 99.0 3.1E-09 6.8E-14 113.8 14.4 71 6-79 304-380 (857)
85 PRK11034 clpA ATP-dependent Cl 99.0 1.6E-10 3.4E-15 121.5 1.1 82 265-356 258-344 (758)
86 PRK10865 protein disaggregatio 98.9 4.4E-10 9.6E-15 120.3 2.8 81 265-356 250-336 (857)
87 CHL00095 clpC Clp protease ATP 98.9 1.1E-09 2.4E-14 117.1 3.5 133 176-356 197-336 (821)
88 TIGR03345 VI_ClpV1 type VI sec 98.8 2E-09 4.4E-14 115.0 4.3 81 265-356 259-345 (852)
89 KOG2004|consensus 98.8 1.1E-08 2.3E-13 103.7 8.0 125 182-357 441-579 (906)
90 COG0466 Lon ATP-dependent Lon 98.8 1.1E-08 2.4E-13 103.9 8.1 116 182-357 353-491 (782)
91 PRK05342 clpX ATP-dependent pr 98.8 1E-08 2.3E-13 101.0 7.1 115 178-339 107-239 (412)
92 KOG0743|consensus 98.8 1.8E-08 3.9E-13 97.8 8.4 84 1-88 328-413 (457)
93 TIGR03346 chaperone_ClpB ATP-d 98.7 3.3E-09 7.1E-14 113.9 1.9 81 265-356 245-331 (852)
94 PRK10787 DNA-binding ATP-depen 98.7 1.3E-07 2.9E-12 100.2 13.0 124 181-356 351-488 (784)
95 TIGR00382 clpX endopeptidase C 98.7 2.1E-08 4.5E-13 98.6 6.1 114 179-339 116-247 (413)
96 KOG0742|consensus 98.7 7.1E-08 1.5E-12 92.3 9.3 82 7-90 483-587 (630)
97 PRK11331 5-methylcytosine-spec 98.6 3.4E-08 7.4E-13 97.2 4.8 66 278-357 263-354 (459)
98 PF05496 RuvB_N: Holliday junc 98.5 1.3E-07 2.8E-12 84.8 6.3 107 178-355 49-172 (233)
99 PF07728 AAA_5: AAA domain (dy 98.4 3.2E-08 6.9E-13 82.8 -0.3 54 285-353 65-139 (139)
100 COG2256 MGS1 ATPase related to 98.4 1E-07 2.2E-12 91.3 2.9 100 178-349 47-153 (436)
101 PRK00080 ruvB Holliday junctio 98.4 2.2E-07 4.8E-12 89.3 4.2 110 178-355 50-173 (328)
102 TIGR00635 ruvB Holliday juncti 98.4 3.7E-07 8E-12 86.7 4.9 56 285-355 81-152 (305)
103 cd00009 AAA The AAA+ (ATPases 98.3 1.2E-06 2.6E-11 72.3 5.7 67 278-355 77-145 (151)
104 smart00382 AAA ATPases associa 98.3 1.2E-06 2.6E-11 71.5 5.2 80 267-356 60-141 (148)
105 PRK14956 DNA polymerase III su 98.2 2.1E-06 4.5E-11 85.6 7.2 52 283-349 119-170 (484)
106 PF07724 AAA_2: AAA domain (Cd 98.2 3.6E-07 7.9E-12 79.6 1.5 53 288-342 71-132 (171)
107 COG0714 MoxR-like ATPases [Gen 98.2 1.2E-06 2.6E-11 84.3 4.8 121 179-354 43-181 (329)
108 TIGR02928 orc1/cdc6 family rep 98.2 6.3E-06 1.4E-10 80.1 9.4 143 179-354 40-190 (365)
109 PRK13342 recombination factor 98.1 2.7E-06 5.9E-11 84.4 4.4 102 179-354 36-144 (413)
110 PRK07940 DNA polymerase III su 98.1 3E-06 6.6E-11 83.2 4.5 61 274-349 102-166 (394)
111 PRK14962 DNA polymerase III su 98.0 1.3E-05 2.8E-10 80.6 7.7 53 285-354 117-169 (472)
112 PHA02544 44 clamp loader, smal 98.0 4.3E-06 9.2E-11 79.8 3.8 56 284-355 99-154 (316)
113 TIGR01650 PD_CobS cobaltochela 98.0 6E-06 1.3E-10 78.6 4.3 124 179-355 64-213 (327)
114 PRK00411 cdc6 cell division co 98.0 1.2E-05 2.5E-10 79.1 6.5 135 179-349 55-195 (394)
115 PRK12323 DNA polymerase III su 98.0 1.5E-05 3.3E-10 81.8 6.8 52 283-349 122-173 (700)
116 TIGR02640 gas_vesic_GvpN gas v 97.9 5.8E-06 1.3E-10 77.0 3.4 33 180-232 22-55 (262)
117 KOG1051|consensus 97.9 2.7E-05 5.8E-10 82.6 7.6 113 177-340 589-711 (898)
118 PRK05563 DNA polymerase III su 97.9 3.2E-05 6.9E-10 79.5 8.0 68 273-355 103-175 (559)
119 PTZ00112 origin recognition co 97.9 3.7E-05 8E-10 80.9 8.2 134 182-349 784-924 (1164)
120 KOG2028|consensus 97.9 8.2E-06 1.8E-10 77.5 2.9 102 179-349 162-271 (554)
121 PRK07003 DNA polymerase III su 97.9 3.6E-05 7.7E-10 80.3 7.7 51 284-349 118-168 (830)
122 PRK04195 replication factor C 97.8 1.1E-05 2.4E-10 81.6 3.5 110 179-349 39-149 (482)
123 COG2255 RuvB Holliday junction 97.8 2.2E-05 4.7E-10 72.5 5.0 107 178-355 51-174 (332)
124 PRK06645 DNA polymerase III su 97.8 4E-05 8.6E-10 77.6 7.0 70 272-356 111-185 (507)
125 PHA02244 ATPase-like protein 97.8 2E-05 4.2E-10 76.1 4.1 59 285-355 180-255 (383)
126 TIGR00678 holB DNA polymerase 97.8 6.6E-05 1.4E-09 66.1 7.1 51 284-349 95-145 (188)
127 COG1219 ClpX ATP-dependent pro 97.8 4.2E-05 9.1E-10 71.6 5.9 105 178-325 96-203 (408)
128 PRK14959 DNA polymerase III su 97.7 6.4E-05 1.4E-09 77.4 7.2 52 283-349 117-168 (624)
129 PRK14965 DNA polymerase III su 97.7 9E-05 2E-09 76.5 7.9 57 285-356 119-176 (576)
130 PRK14963 DNA polymerase III su 97.7 9.5E-05 2.1E-09 75.0 8.0 51 284-349 115-165 (504)
131 PRK14961 DNA polymerase III su 97.7 0.00013 2.8E-09 71.2 7.9 50 285-349 119-168 (363)
132 TIGR02397 dnaX_nterm DNA polym 97.7 8.6E-05 1.9E-09 71.9 6.5 53 285-354 117-169 (355)
133 PRK14970 DNA polymerase III su 97.7 8.8E-05 1.9E-09 72.4 6.5 51 284-349 107-157 (367)
134 PRK14949 DNA polymerase III su 97.7 0.00011 2.4E-09 77.9 7.6 51 284-349 118-168 (944)
135 PRK06305 DNA polymerase III su 97.6 0.00011 2.3E-09 73.8 7.1 52 283-349 119-170 (451)
136 KOG0745|consensus 97.6 0.00014 3.1E-09 70.7 7.4 133 179-356 226-379 (564)
137 CHL00181 cbbX CbbX; Provisiona 97.6 0.00059 1.3E-08 64.4 11.5 109 8-124 160-280 (287)
138 TIGR00390 hslU ATP-dependent p 97.6 9.3E-06 2E-10 79.5 -1.3 88 178-322 46-136 (441)
139 TIGR02903 spore_lon_C ATP-depe 97.6 0.00026 5.6E-09 73.7 9.1 44 26-69 23-66 (615)
140 PRK07764 DNA polymerase III su 97.6 0.00015 3.3E-09 77.5 7.2 58 277-349 112-169 (824)
141 PRK07994 DNA polymerase III su 97.6 0.00015 3.3E-09 75.2 6.8 51 284-349 118-168 (647)
142 PLN03025 replication factor C 97.5 0.00012 2.7E-09 70.0 5.8 50 285-349 99-148 (319)
143 PRK14958 DNA polymerase III su 97.5 0.00017 3.7E-09 73.3 7.0 51 284-349 118-168 (509)
144 PRK14960 DNA polymerase III su 97.5 0.00015 3.2E-09 74.9 6.5 51 284-349 117-167 (702)
145 PRK14948 DNA polymerase III su 97.5 0.00016 3.4E-09 75.2 6.4 68 273-355 105-177 (620)
146 PRK14964 DNA polymerase III su 97.5 0.00017 3.8E-09 72.6 6.5 51 284-349 115-165 (491)
147 COG0542 clpA ATP-binding subun 97.5 0.00018 3.9E-09 75.4 6.2 82 265-356 242-328 (786)
148 PRK08691 DNA polymerase III su 97.4 0.00023 5E-09 74.0 6.6 61 273-348 103-167 (709)
149 PRK05896 DNA polymerase III su 97.4 0.00026 5.7E-09 72.6 6.7 49 286-349 120-168 (605)
150 PRK00080 ruvB Holliday junctio 97.4 0.0018 3.9E-08 62.3 12.2 101 8-129 149-249 (328)
151 PRK14952 DNA polymerase III su 97.4 0.00031 6.7E-09 72.3 7.3 57 284-355 117-174 (584)
152 KOG0744|consensus 97.4 0.00018 4E-09 67.5 5.0 110 1-129 289-413 (423)
153 TIGR02902 spore_lonB ATP-depen 97.4 0.00071 1.5E-08 69.3 9.8 97 10-129 235-331 (531)
154 PRK13341 recombination factor 97.4 0.00013 2.8E-09 76.9 4.4 48 285-349 109-158 (725)
155 PRK00149 dnaA chromosomal repl 97.4 2.4E-05 5.3E-10 78.5 -1.0 57 285-354 211-270 (450)
156 PRK06893 DNA replication initi 97.4 9.6E-05 2.1E-09 67.4 2.9 55 285-349 91-148 (229)
157 TIGR00635 ruvB Holliday juncti 97.4 0.0015 3.3E-08 61.8 11.2 79 8-92 128-206 (305)
158 TIGR02902 spore_lonB ATP-depen 97.4 0.00041 8.9E-09 71.0 7.4 22 331-354 235-256 (531)
159 PRK14969 DNA polymerase III su 97.3 0.00043 9.4E-09 70.7 7.2 50 284-348 118-167 (527)
160 PRK14953 DNA polymerase III su 97.3 0.00043 9.3E-09 70.0 7.0 52 283-349 117-168 (486)
161 PRK06647 DNA polymerase III su 97.3 0.00056 1.2E-08 70.4 7.8 51 284-349 118-168 (563)
162 PRK07133 DNA polymerase III su 97.3 0.00061 1.3E-08 71.4 7.5 61 274-349 103-167 (725)
163 TIGR02880 cbbX_cfxQ probable R 97.3 0.0028 6.1E-08 59.7 11.0 110 8-125 159-280 (284)
164 PF07726 AAA_3: ATPase family 97.3 0.00012 2.7E-09 60.1 1.6 52 287-353 64-129 (131)
165 PRK14950 DNA polymerase III su 97.2 0.00076 1.6E-08 70.0 7.4 51 284-349 119-169 (585)
166 PRK09111 DNA polymerase III su 97.2 0.00082 1.8E-08 69.5 7.6 57 284-355 131-188 (598)
167 PRK14957 DNA polymerase III su 97.2 0.00065 1.4E-08 69.4 6.7 51 284-349 118-168 (546)
168 PRK14951 DNA polymerase III su 97.2 0.00092 2E-08 69.3 7.8 50 285-349 124-173 (618)
169 TIGR00362 DnaA chromosomal rep 97.2 4.8E-05 1E-09 75.3 -2.0 56 286-354 200-258 (405)
170 PRK14088 dnaA chromosomal repl 97.1 7.5E-05 1.6E-09 74.7 -1.2 23 179-206 130-153 (440)
171 PF13401 AAA_22: AAA domain; P 97.1 0.00067 1.5E-08 55.5 4.5 122 179-338 4-126 (131)
172 PRK13407 bchI magnesium chelat 97.1 0.0006 1.3E-08 65.6 4.7 56 287-357 130-197 (334)
173 PRK12402 replication factor C 97.1 0.00073 1.6E-08 64.7 5.3 50 285-349 125-174 (337)
174 PRK05201 hslU ATP-dependent pr 97.0 8.5E-05 1.9E-09 72.9 -1.6 85 179-320 50-137 (443)
175 PRK05707 DNA polymerase III su 97.0 0.0022 4.8E-08 61.7 7.9 58 277-349 98-155 (328)
176 KOG0989|consensus 97.0 0.00087 1.9E-08 62.7 4.9 47 287-348 131-177 (346)
177 TIGR02881 spore_V_K stage V sp 97.0 0.0038 8.3E-08 58.0 9.3 91 8-103 142-246 (261)
178 TIGR00763 lon ATP-dependent pr 97.0 0.0047 1E-07 66.2 11.2 116 8-129 462-585 (775)
179 PF13177 DNA_pol3_delta2: DNA 97.0 0.0021 4.6E-08 55.3 6.8 52 283-349 100-151 (162)
180 COG0470 HolB ATPase involved i 96.9 0.0013 2.8E-08 62.5 5.5 51 283-348 107-157 (325)
181 PRK07471 DNA polymerase III su 96.9 0.0054 1.2E-07 59.9 9.6 57 278-349 134-190 (365)
182 COG2812 DnaX DNA polymerase II 96.9 0.0018 3.9E-08 65.4 6.3 74 270-358 104-178 (515)
183 PF00158 Sigma54_activat: Sigm 96.9 0.0011 2.5E-08 57.4 4.3 39 179-234 22-61 (168)
184 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.00039 8.5E-09 62.7 1.4 22 178-204 37-59 (226)
185 smart00350 MCM minichromosome 96.9 0.0012 2.6E-08 67.4 4.8 55 287-356 302-380 (509)
186 PRK13531 regulatory ATPase Rav 96.8 0.00099 2.1E-08 66.7 4.0 21 179-204 39-60 (498)
187 PRK08451 DNA polymerase III su 96.8 0.0029 6.2E-08 64.5 7.0 49 286-349 118-166 (535)
188 PRK14971 DNA polymerase III su 96.8 0.0031 6.6E-08 65.7 7.4 49 286-349 122-170 (614)
189 PRK09112 DNA polymerase III su 96.8 0.0036 7.8E-08 60.8 7.3 57 278-349 134-190 (351)
190 KOG1969|consensus 96.8 0.0028 6E-08 65.5 6.4 38 178-235 325-363 (877)
191 PRK06964 DNA polymerase III su 96.8 0.0038 8.3E-08 60.3 7.1 57 278-349 125-181 (342)
192 PRK00440 rfc replication facto 96.7 0.0018 3.9E-08 61.5 4.8 50 285-349 102-151 (319)
193 PRK12422 chromosomal replicati 96.7 0.00029 6.3E-09 70.5 -0.8 22 179-205 141-163 (445)
194 TIGR02031 BchD-ChlD magnesium 96.7 0.0024 5.2E-08 66.2 5.7 56 287-357 86-155 (589)
195 TIGR02442 Cob-chelat-sub cobal 96.7 0.0021 4.7E-08 67.2 5.3 56 287-357 128-195 (633)
196 PRK14955 DNA polymerase III su 96.7 0.0029 6.2E-08 62.6 6.0 50 285-349 127-176 (397)
197 PRK05564 DNA polymerase III su 96.7 0.0039 8.4E-08 59.5 6.5 57 278-349 86-142 (313)
198 PRK06526 transposase; Provisio 96.7 0.0011 2.3E-08 61.5 2.6 21 179-204 98-119 (254)
199 PRK14086 dnaA chromosomal repl 96.6 0.0004 8.7E-09 71.4 -0.7 20 181-205 316-336 (617)
200 PF05673 DUF815: Protein of un 96.6 0.0021 4.5E-08 58.7 3.8 106 177-348 50-159 (249)
201 PF03969 AFG1_ATPase: AFG1-lik 96.6 0.0022 4.8E-08 62.4 4.2 40 287-340 129-168 (362)
202 CHL00081 chlI Mg-protoporyphyr 96.5 0.0045 9.8E-08 59.9 6.0 56 287-357 146-213 (350)
203 COG1474 CDC6 Cdc6-related prot 96.5 0.0047 1E-07 60.3 5.9 55 283-349 121-178 (366)
204 TIGR02928 orc1/cdc6 family rep 96.5 0.027 5.8E-07 54.7 11.2 103 8-129 164-273 (365)
205 PRK08084 DNA replication initi 96.5 0.0012 2.5E-08 60.5 1.3 21 179-204 45-66 (235)
206 PRK08058 DNA polymerase III su 96.4 0.0034 7.4E-08 60.4 4.3 52 283-349 108-159 (329)
207 TIGR00362 DnaA chromosomal rep 96.3 0.019 4.1E-07 56.9 8.7 101 7-129 231-336 (405)
208 TIGR00368 Mg chelatase-related 96.2 0.0071 1.5E-07 61.4 5.3 22 178-204 210-232 (499)
209 PRK14954 DNA polymerase III su 96.2 0.014 2.9E-07 60.8 7.5 51 284-349 126-176 (620)
210 PRK08727 hypothetical protein; 96.1 0.0014 3E-08 60.0 -0.1 54 285-349 93-149 (233)
211 PRK05642 DNA replication initi 96.1 0.0023 5E-08 58.5 1.3 52 287-349 99-153 (234)
212 PRK06620 hypothetical protein; 96.0 0.0034 7.4E-08 56.6 2.1 19 180-203 45-64 (214)
213 PRK08903 DnaA regulatory inact 96.0 0.0033 7.2E-08 56.9 1.9 21 179-204 42-63 (227)
214 KOG0478|consensus 96.0 0.045 9.8E-07 56.4 9.8 24 178-203 461-485 (804)
215 TIGR02012 tigrfam_recA protein 96.0 0.012 2.7E-07 56.2 5.6 82 260-341 108-193 (321)
216 PRK08181 transposase; Validate 96.0 0.007 1.5E-07 56.6 3.9 21 179-204 106-127 (269)
217 PRK00149 dnaA chromosomal repl 96.0 0.025 5.3E-07 56.9 8.0 101 7-129 243-348 (450)
218 TIGR02974 phageshock_pspF psp 96.0 0.012 2.5E-07 56.7 5.4 39 179-234 22-61 (329)
219 PF05621 TniB: Bacterial TniB 96.0 0.029 6.2E-07 52.9 7.8 171 148-357 34-209 (302)
220 cd01120 RecA-like_NTPases RecA 95.9 0.0064 1.4E-07 51.1 3.2 65 275-343 75-140 (165)
221 PRK06893 DNA replication initi 95.9 0.054 1.2E-06 49.3 9.4 78 9-90 126-206 (229)
222 PRK08116 hypothetical protein; 95.9 0.0025 5.4E-08 59.5 0.6 24 179-207 114-138 (268)
223 PRK07952 DNA replication prote 95.8 0.0038 8.1E-08 57.5 1.2 24 179-207 99-123 (244)
224 TIGR02030 BchI-ChlI magnesium 95.8 0.02 4.3E-07 55.3 6.2 57 286-357 132-200 (337)
225 PRK09862 putative ATP-dependen 95.7 0.021 4.5E-07 58.0 6.1 56 287-357 296-383 (506)
226 PRK12377 putative replication 95.7 0.0058 1.2E-07 56.4 1.9 23 179-206 101-124 (248)
227 PRK14087 dnaA chromosomal repl 95.6 0.0028 6.2E-08 63.6 -0.2 22 179-205 141-163 (450)
228 KOG1514|consensus 95.6 0.082 1.8E-06 54.7 10.0 135 180-348 423-559 (767)
229 PRK07993 DNA polymerase III su 95.4 0.064 1.4E-06 51.8 8.3 60 274-348 97-156 (334)
230 PRK04132 replication factor C 95.4 0.009 1.9E-07 64.0 2.5 49 286-349 631-679 (846)
231 PRK09183 transposase/IS protei 95.4 0.015 3.2E-07 54.1 3.6 20 179-203 102-122 (259)
232 PRK06871 DNA polymerase III su 95.4 0.037 8.1E-07 53.1 6.4 59 276-349 98-156 (325)
233 PF01078 Mg_chelatase: Magnesi 95.4 0.022 4.8E-07 50.8 4.5 25 178-207 21-46 (206)
234 cd00983 recA RecA is a bacter 95.3 0.016 3.4E-07 55.6 3.6 85 259-343 107-195 (325)
235 PRK00411 cdc6 cell division co 95.2 0.17 3.6E-06 49.7 10.8 103 9-129 173-281 (394)
236 PRK15429 formate hydrogenlyase 95.2 0.078 1.7E-06 56.2 8.8 39 179-234 399-438 (686)
237 cd01124 KaiC KaiC is a circadi 95.2 0.031 6.7E-07 48.6 4.8 26 274-299 84-109 (187)
238 COG1484 DnaC DNA replication p 95.1 0.01 2.2E-07 55.0 1.7 25 178-207 104-129 (254)
239 PRK06090 DNA polymerase III su 95.1 0.094 2E-06 50.2 8.2 57 278-349 101-157 (319)
240 PRK08769 DNA polymerase III su 95.0 0.11 2.4E-06 49.7 8.6 57 278-349 106-162 (319)
241 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.1 2.2E-06 46.8 7.9 80 9-94 124-208 (226)
242 PF01637 Arch_ATPase: Archaeal 95.0 0.068 1.5E-06 47.7 6.7 64 269-340 101-166 (234)
243 TIGR02397 dnaX_nterm DNA polym 95.0 0.095 2.1E-06 50.6 8.0 78 8-92 146-223 (355)
244 PRK07399 DNA polymerase III su 94.9 0.06 1.3E-06 51.5 6.4 54 280-349 119-172 (314)
245 PRK05917 DNA polymerase III su 94.9 0.11 2.5E-06 48.9 8.0 58 277-349 87-144 (290)
246 PRK15424 propionate catabolism 94.8 0.031 6.7E-07 57.3 4.4 47 179-234 242-289 (538)
247 TIGR01618 phage_P_loop phage n 94.8 0.081 1.8E-06 47.9 6.5 19 180-203 13-32 (220)
248 PRK11608 pspF phage shock prot 94.7 0.038 8.2E-07 53.1 4.5 38 180-234 30-68 (326)
249 PRK11388 DNA-binding transcrip 94.7 0.04 8.7E-07 57.9 5.1 38 180-234 349-387 (638)
250 COG3829 RocR Transcriptional r 94.6 0.052 1.1E-06 54.8 5.2 120 178-353 267-401 (560)
251 KOG0990|consensus 94.6 0.072 1.6E-06 50.4 5.7 51 283-348 129-179 (360)
252 PF14532 Sigma54_activ_2: Sigm 94.6 0.07 1.5E-06 44.4 5.2 19 180-203 22-41 (138)
253 TIGR02237 recomb_radB DNA repa 94.5 0.04 8.6E-07 49.1 3.8 71 272-344 84-154 (209)
254 PF00308 Bac_DnaA: Bacterial d 94.5 0.029 6.2E-07 50.8 2.9 48 286-344 98-145 (219)
255 PRK05022 anaerobic nitric oxid 94.4 0.061 1.3E-06 55.0 5.3 39 179-234 210-249 (509)
256 PRK08084 DNA replication initi 94.4 0.29 6.3E-06 44.7 9.3 76 10-91 133-213 (235)
257 TIGR01817 nifA Nif-specific re 94.4 0.054 1.2E-06 55.7 4.9 39 179-234 219-258 (534)
258 PRK09087 hypothetical protein; 94.4 0.16 3.5E-06 46.1 7.5 77 6-88 115-196 (226)
259 TIGR02329 propionate_PrpR prop 94.3 0.075 1.6E-06 54.4 5.7 39 179-234 235-274 (526)
260 PRK06620 hypothetical protein; 94.3 0.23 5.1E-06 44.7 8.4 78 6-90 111-192 (214)
261 COG1239 ChlI Mg-chelatase subu 94.3 0.12 2.6E-06 50.7 6.8 26 177-207 36-62 (423)
262 PRK14961 DNA polymerase III su 94.2 0.24 5.3E-06 48.3 9.0 79 7-92 147-225 (363)
263 PRK06645 DNA polymerase III su 94.2 0.29 6.3E-06 49.9 9.8 80 7-93 156-235 (507)
264 PF00931 NB-ARC: NB-ARC domain 94.2 0.14 3E-06 47.7 7.0 96 177-297 17-113 (287)
265 PRK08699 DNA polymerase III su 94.1 0.11 2.3E-06 50.0 6.1 55 280-349 108-162 (325)
266 PRK06921 hypothetical protein; 94.1 0.049 1.1E-06 50.8 3.6 22 179-205 117-139 (266)
267 PRK08903 DnaA regulatory inact 94.0 0.36 7.8E-06 43.5 9.0 100 7-128 120-224 (227)
268 PRK10365 transcriptional regul 94.0 0.044 9.5E-07 54.6 3.3 39 179-234 162-201 (441)
269 PF05272 VirE: Virulence-assoc 94.0 0.056 1.2E-06 48.2 3.6 56 287-353 97-162 (198)
270 PRK14962 DNA polymerase III su 94.0 0.32 7E-06 49.2 9.5 75 8-89 146-220 (472)
271 COG3604 FhlA Transcriptional r 94.0 0.09 2E-06 52.6 5.3 124 178-353 245-378 (550)
272 PRK10787 DNA-binding ATP-depen 94.0 0.32 6.9E-06 52.3 9.9 110 8-129 464-581 (784)
273 PTZ00111 DNA replication licen 94.0 0.087 1.9E-06 56.7 5.5 23 176-203 489-512 (915)
274 PF00910 RNA_helicase: RNA hel 93.9 0.088 1.9E-06 41.8 4.4 18 182-204 1-19 (107)
275 PRK08727 hypothetical protein; 93.9 0.27 5.9E-06 44.8 8.1 73 11-89 129-206 (233)
276 PRK11361 acetoacetate metaboli 93.9 0.082 1.8E-06 52.9 5.0 39 179-234 166-205 (457)
277 TIGR00602 rad24 checkpoint pro 93.8 0.061 1.3E-06 56.1 4.1 19 180-203 111-130 (637)
278 PRK08939 primosomal protein Dn 93.7 0.043 9.2E-07 52.3 2.5 23 179-206 156-179 (306)
279 PRK14722 flhF flagellar biosyn 93.7 0.17 3.6E-06 49.6 6.6 128 180-348 138-267 (374)
280 PF05707 Zot: Zonular occluden 93.6 0.14 3.1E-06 45.2 5.5 61 285-355 79-139 (193)
281 PRK12422 chromosomal replicati 93.6 0.37 8.1E-06 48.4 9.0 102 8-129 235-342 (445)
282 PF06068 TIP49: TIP49 C-termin 93.6 0.023 4.9E-07 55.0 0.3 50 178-245 49-99 (398)
283 PRK09354 recA recombinase A; P 93.6 0.06 1.3E-06 52.1 3.2 70 268-337 121-194 (349)
284 PF00493 MCM: MCM2/3/5 family 93.5 0.047 1E-06 52.6 2.5 55 287-356 123-201 (331)
285 PRK07940 DNA polymerase III su 93.5 0.3 6.4E-06 48.3 8.1 71 8-89 146-216 (394)
286 PRK14088 dnaA chromosomal repl 93.5 0.26 5.6E-06 49.5 7.8 101 7-129 226-331 (440)
287 TIGR03015 pepcterm_ATPase puta 93.4 0.28 6E-06 45.3 7.4 87 25-129 178-265 (269)
288 PF05729 NACHT: NACHT domain 93.4 0.17 3.7E-06 42.5 5.5 21 280-300 76-96 (166)
289 cd01394 radB RadB. The archaea 93.3 0.22 4.8E-06 44.6 6.3 68 273-341 92-159 (218)
290 PRK09519 recA DNA recombinatio 93.3 0.2 4.4E-06 53.3 6.8 76 268-343 121-200 (790)
291 PRK05563 DNA polymerase III su 93.1 0.55 1.2E-05 48.6 9.7 78 8-92 148-225 (559)
292 PRK07276 DNA polymerase III su 93.0 0.23 5.1E-06 46.8 6.3 57 278-349 97-153 (290)
293 COG1224 TIP49 DNA helicase TIP 93.0 0.048 1E-06 52.3 1.6 51 177-245 63-114 (450)
294 PF00448 SRP54: SRP54-type pro 92.9 0.11 2.4E-06 46.1 3.7 131 180-346 2-133 (196)
295 COG2607 Predicted ATPase (AAA+ 92.8 0.15 3.4E-06 46.4 4.5 105 178-348 84-192 (287)
296 KOG2383|consensus 92.8 0.32 7E-06 47.5 6.9 19 176-196 111-130 (467)
297 PTZ00112 origin recognition co 92.8 0.42 9E-06 51.5 8.2 102 7-129 900-1005(1164)
298 PRK05642 DNA replication initi 92.7 0.5 1.1E-05 43.1 7.8 80 6-91 128-212 (234)
299 PF01695 IstB_IS21: IstB-like 92.6 0.013 2.8E-07 51.3 -2.6 24 179-207 47-71 (178)
300 COG1485 Predicted ATPase [Gene 92.5 0.12 2.7E-06 49.5 3.6 48 287-348 132-180 (367)
301 TIGR02903 spore_lon_C ATP-depe 92.5 1.2 2.7E-05 46.5 11.3 106 9-129 323-429 (615)
302 TIGR00764 lon_rel lon-related 92.4 0.24 5.2E-06 51.7 5.9 104 9-129 268-390 (608)
303 PRK10820 DNA-binding transcrip 92.4 0.31 6.7E-06 50.0 6.7 38 180-234 228-266 (520)
304 PRK14956 DNA polymerase III su 92.2 0.65 1.4E-05 46.9 8.5 78 7-91 149-226 (484)
305 PRK14953 DNA polymerase III su 92.0 0.71 1.5E-05 46.9 8.6 78 8-92 148-225 (486)
306 COG2874 FlaH Predicted ATPases 91.8 0.12 2.6E-06 46.3 2.5 69 270-349 108-176 (235)
307 TIGR01818 ntrC nitrogen regula 91.8 0.17 3.6E-06 50.8 3.8 39 179-234 157-196 (463)
308 cd01393 recA_like RecA is a b 91.7 0.15 3.3E-06 45.8 3.1 57 282-338 111-167 (226)
309 TIGR03015 pepcterm_ATPase puta 91.7 0.53 1.2E-05 43.4 6.9 20 180-204 44-64 (269)
310 TIGR02915 PEP_resp_reg putativ 91.6 0.3 6.5E-06 48.7 5.5 39 179-234 162-201 (445)
311 PRK14086 dnaA chromosomal repl 91.6 1.4 3.1E-05 45.7 10.4 77 9-92 411-493 (617)
312 KOG0991|consensus 91.6 0.1 2.3E-06 47.4 1.9 21 179-204 48-69 (333)
313 PRK15115 response regulator Gl 91.6 0.19 4.2E-06 50.1 4.0 38 180-234 158-196 (444)
314 PRK07003 DNA polymerase III su 91.6 1.1 2.3E-05 47.7 9.5 79 7-92 147-225 (830)
315 COG1220 HslU ATP-dependent pro 91.4 0.25 5.4E-06 47.3 4.3 82 270-357 237-331 (444)
316 PRK06835 DNA replication prote 91.3 0.12 2.7E-06 49.7 2.2 22 180-206 184-206 (329)
317 PRK09087 hypothetical protein; 91.2 0.14 3E-06 46.6 2.4 18 181-203 46-64 (226)
318 COG1221 PspF Transcriptional r 91.2 0.16 3.5E-06 50.0 2.9 39 180-235 102-142 (403)
319 COG2204 AtoC Response regulato 91.2 0.4 8.7E-06 48.1 5.7 39 179-234 164-203 (464)
320 KOG2227|consensus 91.0 0.26 5.5E-06 49.0 4.1 53 285-349 256-308 (529)
321 PRK09361 radB DNA repair and r 91.0 0.24 5.1E-06 44.7 3.7 64 274-338 97-160 (225)
322 PRK12402 replication factor C 91.0 2.5 5.3E-05 40.3 10.9 71 9-89 155-225 (337)
323 KOG1051|consensus 91.0 0.22 4.8E-06 53.5 3.9 82 266-358 260-347 (898)
324 PRK13406 bchD magnesium chelat 90.9 0.4 8.7E-06 49.7 5.6 56 287-357 95-164 (584)
325 cd01122 GP4d_helicase GP4d_hel 90.9 0.62 1.3E-05 43.1 6.5 68 269-340 124-193 (271)
326 PF06745 KaiC: KaiC; InterPro 90.8 0.12 2.7E-06 46.5 1.7 62 268-338 98-159 (226)
327 PRK14964 DNA polymerase III su 90.8 1 2.2E-05 45.7 8.3 80 7-93 144-223 (491)
328 PRK07133 DNA polymerase III su 90.8 1.3 2.8E-05 47.0 9.2 78 7-91 146-223 (725)
329 PF05673 DUF815: Protein of un 90.5 1.9 4E-05 39.7 8.9 50 8-57 140-210 (249)
330 PRK13342 recombination factor 90.4 2 4.3E-05 42.7 9.9 80 8-91 119-200 (413)
331 PRK12323 DNA polymerase III su 90.4 0.73 1.6E-05 48.2 6.9 79 7-92 152-230 (700)
332 cd01121 Sms Sms (bacterial rad 90.3 0.18 3.8E-06 49.5 2.3 28 273-300 146-173 (372)
333 KOG0482|consensus 90.2 0.11 2.4E-06 51.9 0.9 27 175-203 371-398 (721)
334 smart00350 MCM minichromosome 90.1 3.2 6.8E-05 42.5 11.3 47 8-56 342-402 (509)
335 PRK11823 DNA repair protein Ra 90.1 0.19 4E-06 50.5 2.3 28 273-300 144-171 (446)
336 PRK00440 rfc replication facto 90.0 2.6 5.7E-05 39.7 10.0 74 9-89 132-205 (319)
337 PRK14970 DNA polymerase III su 89.7 2.1 4.6E-05 41.6 9.4 78 8-92 137-214 (367)
338 PRK08451 DNA polymerase III su 89.7 1.8 3.9E-05 44.4 9.1 80 8-94 146-225 (535)
339 PRK06647 DNA polymerase III su 89.7 1.7 3.6E-05 45.1 8.9 79 7-92 147-225 (563)
340 COG0593 DnaA ATPase involved i 89.6 0.11 2.3E-06 51.2 0.2 22 181-207 115-137 (408)
341 PHA02544 44 clamp loader, smal 89.6 0.87 1.9E-05 43.2 6.4 46 8-56 130-175 (316)
342 PF13173 AAA_14: AAA domain 89.4 0.2 4.4E-06 40.9 1.7 18 181-203 4-22 (128)
343 PRK14087 dnaA chromosomal repl 89.4 0.94 2E-05 45.6 6.7 104 8-129 239-347 (450)
344 PRK06067 flagellar accessory p 89.3 0.74 1.6E-05 41.7 5.5 30 270-299 105-134 (234)
345 cd01128 rho_factor Transcripti 89.3 1.1 2.3E-05 41.5 6.4 18 283-300 101-118 (249)
346 COG3284 AcoR Transcriptional a 89.2 0.23 5E-06 51.0 2.2 53 288-353 410-467 (606)
347 TIGR02030 BchI-ChlI magnesium 89.2 2.4 5.1E-05 41.0 9.1 45 8-54 173-219 (337)
348 PRK13407 bchI magnesium chelat 89.1 3.4 7.3E-05 39.9 10.0 45 8-54 170-216 (334)
349 PRK04195 replication factor C 88.8 1.8 3.8E-05 44.0 8.3 75 8-91 129-203 (482)
350 TIGR00678 holB DNA polymerase 88.6 1.1 2.4E-05 39.1 5.9 59 8-78 125-183 (188)
351 PRK08533 flagellar accessory p 88.5 0.59 1.3E-05 42.5 4.2 28 271-298 103-130 (230)
352 PF12775 AAA_7: P-loop contain 88.5 0.93 2E-05 42.4 5.6 62 283-349 98-170 (272)
353 PRK05818 DNA polymerase III su 88.3 3.1 6.7E-05 38.6 8.8 50 285-349 88-137 (261)
354 PRK05896 DNA polymerase III su 88.3 1.7 3.7E-05 45.2 7.8 77 7-90 147-223 (605)
355 PRK14963 DNA polymerase III su 88.3 3.2 6.9E-05 42.4 9.7 77 8-91 145-221 (504)
356 COG1241 MCM2 Predicted ATPase 88.3 0.28 6.2E-06 51.4 2.2 25 177-203 317-342 (682)
357 PHA00729 NTP-binding motif con 88.3 0.51 1.1E-05 42.9 3.5 23 178-205 16-39 (226)
358 PRK07994 DNA polymerase III su 88.0 2.8 6E-05 44.1 9.2 78 7-91 147-224 (647)
359 PRK14960 DNA polymerase III su 87.9 2.2 4.7E-05 44.9 8.2 78 8-92 147-224 (702)
360 PRK14951 DNA polymerase III su 87.5 3.2 6.8E-05 43.5 9.2 78 8-92 153-230 (618)
361 PRK10923 glnG nitrogen regulat 87.2 2 4.4E-05 43.1 7.6 39 179-234 161-200 (469)
362 KOG1968|consensus 87.1 0.28 6.1E-06 52.9 1.3 40 182-241 360-400 (871)
363 PRK10536 hypothetical protein; 87.0 0.77 1.7E-05 42.6 4.0 49 278-342 169-217 (262)
364 PRK06305 DNA polymerase III su 86.9 3.2 7E-05 41.8 8.7 76 8-90 150-225 (451)
365 PRK14965 DNA polymerase III su 86.8 2.2 4.7E-05 44.4 7.6 79 7-92 147-225 (576)
366 PF09336 Vps4_C: Vps4 C termin 86.7 0.91 2E-05 32.4 3.4 37 108-147 20-56 (62)
367 PRK10867 signal recognition pa 86.5 2.1 4.6E-05 42.8 7.1 90 177-292 98-190 (433)
368 TIGR00390 hslU ATP-dependent p 86.4 0.56 1.2E-05 46.5 2.9 56 278-337 242-306 (441)
369 PRK08691 DNA polymerase III su 86.4 2 4.4E-05 45.3 7.1 80 7-93 147-226 (709)
370 PF00154 RecA: recA bacterial 86.2 0.55 1.2E-05 45.0 2.6 94 247-343 96-193 (322)
371 PF00308 Bac_DnaA: Bacterial d 86.1 1.6 3.4E-05 39.4 5.5 80 6-91 128-212 (219)
372 PRK00771 signal recognition pa 86.0 2.8 6E-05 42.0 7.7 130 178-346 94-225 (437)
373 COG4650 RtcR Sigma54-dependent 85.9 0.52 1.1E-05 44.3 2.3 62 34-100 75-137 (531)
374 PF02562 PhoH: PhoH-like prote 85.5 2.5 5.4E-05 37.9 6.3 49 278-342 112-160 (205)
375 PRK14974 cell division protein 85.2 1.8 4E-05 41.7 5.7 132 179-346 140-272 (336)
376 PRK14958 DNA polymerase III su 85.0 2.5 5.5E-05 43.2 7.0 78 8-92 148-225 (509)
377 KOG0477|consensus 85.0 0.42 9.2E-06 49.1 1.3 26 176-203 479-505 (854)
378 cd00984 DnaB_C DnaB helicase C 85.0 1.7 3.7E-05 39.4 5.2 30 270-299 108-137 (242)
379 KOG2170|consensus 84.9 2.1 4.7E-05 40.4 5.8 83 176-297 107-190 (344)
380 COG1618 Predicted nucleotide k 84.9 1.1 2.4E-05 38.5 3.6 23 179-206 5-28 (179)
381 cd01123 Rad51_DMC1_radA Rad51_ 84.8 2.2 4.8E-05 38.4 5.9 57 281-338 110-168 (235)
382 TIGR02640 gas_vesic_GvpN gas v 84.8 1.5 3.2E-05 40.8 4.7 44 8-54 150-198 (262)
383 PF13604 AAA_30: AAA domain; P 84.4 1.2 2.6E-05 39.4 3.8 45 284-343 92-136 (196)
384 PRK05201 hslU ATP-dependent pr 84.3 0.79 1.7E-05 45.5 2.8 73 278-356 244-329 (443)
385 PRK14949 DNA polymerase III su 84.2 5.4 0.00012 43.4 9.1 79 7-92 147-225 (944)
386 PRK07132 DNA polymerase III su 84.1 2.6 5.7E-05 40.0 6.2 51 284-349 89-139 (299)
387 TIGR02031 BchD-ChlD magnesium 84.0 7.3 0.00016 40.7 9.9 45 9-55 127-175 (589)
388 PRK07764 DNA polymerase III su 83.7 7.8 0.00017 42.0 10.2 78 8-92 149-226 (824)
389 KOG1942|consensus 83.6 0.46 1E-05 44.7 0.8 50 178-245 63-113 (456)
390 PRK14952 DNA polymerase III su 83.6 7.8 0.00017 40.3 9.9 79 7-92 146-224 (584)
391 PRK14957 DNA polymerase III su 83.4 6.8 0.00015 40.4 9.2 78 8-92 148-225 (546)
392 TIGR03877 thermo_KaiC_1 KaiC d 83.2 2.8 6.1E-05 38.1 5.9 49 269-323 110-158 (237)
393 cd03115 SRP The signal recogni 83.0 4.3 9.2E-05 34.7 6.7 13 182-196 3-16 (173)
394 TIGR01425 SRP54_euk signal rec 82.9 3.4 7.3E-05 41.3 6.6 130 178-344 99-230 (429)
395 PRK04132 replication factor C 82.3 7.4 0.00016 42.2 9.3 66 7-78 658-723 (846)
396 PRK11889 flhF flagellar biosyn 82.2 2.1 4.5E-05 42.3 4.7 124 179-342 241-366 (436)
397 PRK14959 DNA polymerase III su 82.1 5 0.00011 41.9 7.8 66 7-78 147-212 (624)
398 PRK12723 flagellar biosynthesi 82.0 3.9 8.4E-05 40.3 6.6 132 179-348 174-307 (388)
399 cd01131 PilT Pilus retraction 81.9 1 2.3E-05 39.8 2.4 17 278-294 67-83 (198)
400 COG0593 DnaA ATPase involved i 81.8 12 0.00025 37.2 9.8 101 7-129 207-312 (408)
401 COG3283 TyrR Transcriptional r 81.8 2.1 4.5E-05 41.5 4.4 104 182-340 230-344 (511)
402 PF03215 Rad17: Rad17 cell cyc 81.8 4.1 8.9E-05 41.8 6.9 19 180-203 46-65 (519)
403 PRK09111 DNA polymerase III su 81.7 7.5 0.00016 40.6 8.9 78 8-92 161-238 (598)
404 PF01580 FtsK_SpoIIIE: FtsK/Sp 81.3 1.8 4E-05 38.2 3.8 54 283-342 152-205 (205)
405 PRK12724 flagellar biosynthesi 81.2 2.9 6.2E-05 41.6 5.4 129 179-349 223-355 (432)
406 TIGR02858 spore_III_AA stage I 81.0 4.3 9.2E-05 38.0 6.2 46 277-342 186-231 (270)
407 PF05496 RuvB_N: Holliday junc 80.6 6.1 0.00013 35.9 6.9 74 8-87 148-221 (233)
408 cd03238 ABC_UvrA The excision 80.3 8.7 0.00019 33.4 7.6 54 277-343 97-152 (176)
409 PRK09112 DNA polymerase III su 80.3 11 0.00024 36.6 9.1 65 8-80 170-234 (351)
410 PRK13341 recombination factor 80.2 7 0.00015 41.8 8.3 82 7-92 135-222 (725)
411 PRK06964 DNA polymerase III su 79.9 2.7 5.9E-05 40.7 4.7 45 6-53 159-203 (342)
412 PRK14700 recombination factor 79.9 6.7 0.00015 37.1 7.1 76 7-89 6-86 (300)
413 cd03283 ABC_MutS-like MutS-lik 79.8 3.5 7.6E-05 36.6 5.1 60 274-345 94-153 (199)
414 TIGR02238 recomb_DMC1 meiotic 79.7 3.7 8.1E-05 39.2 5.5 70 269-340 172-245 (313)
415 TIGR00959 ffh signal recogniti 79.7 6.1 0.00013 39.5 7.2 24 269-292 166-189 (428)
416 COG3854 SpoIIIAA ncharacterize 79.7 2.4 5.1E-05 38.8 3.8 20 277-296 210-229 (308)
417 PRK09376 rho transcription ter 79.6 4.8 0.0001 39.7 6.3 19 283-301 254-272 (416)
418 CHL00081 chlI Mg-protoporyphyr 79.2 12 0.00027 36.3 9.0 45 8-54 186-232 (350)
419 TIGR02655 circ_KaiC circadian 79.0 2.1 4.6E-05 43.5 3.8 31 269-299 337-367 (484)
420 PRK05707 DNA polymerase III su 78.6 6.2 0.00013 38.0 6.7 65 7-81 134-198 (328)
421 PRK14969 DNA polymerase III su 78.5 5.3 0.00012 41.1 6.6 78 8-92 148-225 (527)
422 PLN03025 replication factor C 78.3 9.8 0.00021 36.2 8.0 64 9-78 129-192 (319)
423 cd00544 CobU Adenosylcobinamid 78.2 3.9 8.5E-05 35.3 4.7 62 273-340 63-126 (169)
424 KOG0481|consensus 78.0 1.9 4.2E-05 43.5 3.0 25 177-203 362-387 (729)
425 COG1066 Sms Predicted ATP-depe 77.5 2.8 6.2E-05 41.3 4.0 91 180-303 94-186 (456)
426 TIGR02688 conserved hypothetic 77.5 0.94 2E-05 45.0 0.7 20 179-203 209-229 (449)
427 PRK04328 hypothetical protein; 77.0 5.4 0.00012 36.7 5.6 47 271-323 114-160 (249)
428 COG1220 HslU ATP-dependent pro 76.9 1.1 2.3E-05 43.1 0.9 44 179-242 50-95 (444)
429 PLN03187 meiotic recombination 76.8 7 0.00015 37.9 6.5 55 282-337 218-273 (344)
430 PF13304 AAA_21: AAA domain; P 76.5 3.1 6.6E-05 36.8 3.8 45 287-344 259-303 (303)
431 TIGR00064 ftsY signal recognit 76.5 4.2 9E-05 38.0 4.8 17 178-196 71-88 (272)
432 TIGR00764 lon_rel lon-related 76.5 1.7 3.8E-05 45.4 2.4 23 330-354 268-292 (608)
433 TIGR02788 VirB11 P-type DNA tr 76.4 2 4.3E-05 40.9 2.6 24 273-296 206-229 (308)
434 TIGR00416 sms DNA repair prote 75.9 1.6 3.5E-05 43.9 2.0 27 274-300 159-185 (454)
435 PRK05703 flhF flagellar biosyn 75.8 15 0.00033 36.6 8.8 16 179-196 221-237 (424)
436 KOG0964|consensus 75.6 1.6 3.5E-05 46.9 1.9 58 275-346 1109-1166(1200)
437 COG0714 MoxR-like ATPases [Gen 75.3 4.1 8.8E-05 39.1 4.5 45 7-53 152-202 (329)
438 PLN03186 DNA repair protein RA 75.3 4.8 0.0001 39.0 4.9 61 276-337 209-270 (342)
439 PRK04296 thymidine kinase; Pro 75.3 1.6 3.5E-05 38.3 1.6 13 182-196 5-18 (190)
440 COG2607 Predicted ATPase (AAA+ 75.1 26 0.00057 32.3 9.2 56 3-58 167-243 (287)
441 COG1419 FlhF Flagellar GTP-bin 74.5 12 0.00027 36.8 7.5 136 179-355 203-340 (407)
442 PRK09302 circadian clock prote 74.5 7 0.00015 39.9 6.2 63 271-341 116-178 (509)
443 PRK14723 flhF flagellar biosyn 74.4 11 0.00024 40.4 7.7 127 180-347 186-314 (767)
444 PF14516 AAA_35: AAA-like doma 74.3 4.8 0.0001 38.7 4.7 31 270-300 109-142 (331)
445 TIGR01420 pilT_fam pilus retra 74.2 2.2 4.8E-05 41.3 2.3 18 278-295 188-205 (343)
446 KOG2228|consensus 74.1 12 0.00027 36.1 7.1 51 284-345 136-186 (408)
447 PRK14950 DNA polymerase III su 73.9 17 0.00036 38.0 8.9 76 8-90 149-224 (585)
448 PRK04301 radA DNA repair and r 73.5 6.3 0.00014 37.6 5.3 64 274-338 186-251 (317)
449 PRK11331 5-methylcytosine-spec 73.5 4.9 0.00011 40.3 4.6 34 4-40 320-357 (459)
450 PRK10416 signal recognition pa 73.5 18 0.0004 34.6 8.4 133 178-346 113-252 (318)
451 PF13479 AAA_24: AAA domain 72.6 2.9 6.3E-05 37.4 2.6 21 179-204 3-24 (213)
452 TIGR02442 Cob-chelat-sub cobal 72.6 28 0.0006 36.7 10.2 45 8-54 168-214 (633)
453 PRK08118 topology modulation p 72.5 1.7 3.8E-05 37.3 1.1 19 180-203 2-21 (167)
454 PF03266 NTPase_1: NTPase; In 72.4 1.7 3.7E-05 37.6 1.0 18 182-204 2-20 (168)
455 PRK13695 putative NTPase; Prov 72.2 3.8 8.2E-05 35.2 3.1 13 182-196 3-16 (174)
456 TIGR01650 PD_CobS cobaltochela 72.2 15 0.00033 35.3 7.4 47 6-54 175-233 (327)
457 PRK06731 flhF flagellar biosyn 72.0 4.8 0.0001 37.7 3.9 62 271-343 139-201 (270)
458 PRK13947 shikimate kinase; Pro 71.9 1.7 3.8E-05 37.0 0.9 19 180-203 2-21 (171)
459 PRK00131 aroK shikimate kinase 71.8 1.8 3.9E-05 36.7 1.0 20 179-203 4-24 (175)
460 COG3267 ExeA Type II secretory 71.4 17 0.00037 33.7 7.2 70 25-97 186-255 (269)
461 PF08423 Rad51: Rad51; InterP 71.4 1.7 3.6E-05 40.3 0.7 63 283-345 131-193 (256)
462 PRK14971 DNA polymerase III su 71.3 21 0.00046 37.5 8.9 77 8-91 150-226 (614)
463 PRK13851 type IV secretion sys 71.3 2.8 6E-05 40.7 2.2 25 178-207 161-186 (344)
464 cd03281 ABC_MSH5_euk MutS5 hom 71.2 7.3 0.00016 34.9 4.9 59 281-348 104-162 (213)
465 COG1224 TIP49 DNA helicase TIP 70.1 30 0.00066 33.8 8.8 99 10-129 321-431 (450)
466 PF00437 T2SE: Type II/IV secr 70.1 2.2 4.8E-05 39.5 1.2 19 278-296 190-208 (270)
467 COG0467 RAD55 RecA-superfamily 70.0 12 0.00026 34.4 6.2 53 269-325 108-160 (260)
468 PRK07471 DNA polymerase III su 69.9 18 0.0004 35.3 7.7 63 8-80 170-232 (365)
469 PRK05973 replicative DNA helic 69.8 8 0.00017 35.4 4.8 22 180-203 65-88 (237)
470 PF13207 AAA_17: AAA domain; P 69.6 1.3 2.7E-05 35.4 -0.4 18 182-204 2-20 (121)
471 cd01130 VirB11-like_ATPase Typ 69.5 3.3 7E-05 36.2 2.1 24 272-295 87-110 (186)
472 PRK10263 DNA translocase FtsK; 69.3 12 0.00026 42.3 6.7 46 286-341 1141-1186(1355)
473 PRK14948 DNA polymerase III su 69.2 24 0.00053 37.0 8.8 75 8-89 150-224 (620)
474 smart00763 AAA_PrkA PrkA AAA d 69.1 2.8 6E-05 40.8 1.7 44 312-357 250-309 (361)
475 cd01125 repA Hexameric Replica 69.1 24 0.00053 31.9 7.9 28 270-297 96-123 (239)
476 TIGR00767 rho transcription te 69.0 8.3 0.00018 38.2 5.0 18 283-300 253-270 (415)
477 KOG1970|consensus 68.9 17 0.00038 37.2 7.2 20 179-203 110-130 (634)
478 PRK13900 type IV secretion sys 68.6 3.3 7.2E-05 39.9 2.2 25 178-207 159-184 (332)
479 PRK05800 cobU adenosylcobinami 68.3 31 0.00067 29.7 8.0 48 285-335 76-123 (170)
480 TIGR02236 recomb_radA DNA repa 67.4 6 0.00013 37.5 3.7 52 285-337 192-244 (310)
481 PF12774 AAA_6: Hydrolytic ATP 67.2 4.7 0.0001 36.7 2.8 36 179-234 32-68 (231)
482 PHA00350 putative assembly pro 66.9 16 0.00034 36.2 6.5 58 287-349 83-154 (399)
483 cd01852 AIG1 AIG1 (avrRpt2-ind 66.8 16 0.00036 31.8 6.1 18 181-203 2-20 (196)
484 COG0606 Predicted ATPase with 66.5 3 6.5E-05 41.8 1.4 27 176-207 195-222 (490)
485 COG1373 Predicted ATPase (AAA+ 66.1 14 0.0003 36.5 6.0 55 285-355 94-148 (398)
486 PRK14954 DNA polymerase III su 66.0 31 0.00068 36.3 8.8 75 8-89 156-230 (620)
487 COG2812 DnaX DNA polymerase II 65.9 33 0.0007 35.2 8.6 80 8-94 148-227 (515)
488 PTZ00035 Rad51 protein; Provis 65.7 14 0.0003 35.7 5.8 67 269-336 194-264 (337)
489 COG5245 DYN1 Dynein, heavy cha 65.6 6.4 0.00014 45.1 3.7 17 178-196 1493-1510(3164)
490 TIGR02239 recomb_RAD51 DNA rep 65.6 6.8 0.00015 37.5 3.6 62 274-337 180-243 (316)
491 PRK12726 flagellar biosynthesi 65.2 11 0.00025 37.1 5.0 22 177-203 204-226 (407)
492 cd00464 SK Shikimate kinase (S 65.1 2.6 5.7E-05 35.0 0.6 17 182-203 2-19 (154)
493 PRK14955 DNA polymerase III su 64.9 14 0.00031 36.4 5.9 78 8-92 156-233 (397)
494 PRK13764 ATPase; Provisional 64.9 5.9 0.00013 41.3 3.2 24 179-207 257-281 (602)
495 PF02463 SMC_N: RecF/RecN/SMC 63.7 8.1 0.00018 34.4 3.6 55 277-345 150-204 (220)
496 KOG2004|consensus 63.5 10 0.00023 40.0 4.6 47 7-56 552-598 (906)
497 PF13671 AAA_33: AAA domain; P 63.5 2.6 5.5E-05 34.6 0.2 17 182-203 2-19 (143)
498 PRK05564 DNA polymerase III su 63.1 42 0.0009 31.8 8.5 64 7-80 121-184 (313)
499 PRK13949 shikimate kinase; Pro 63.1 3.7 8E-05 35.4 1.2 19 180-203 2-21 (169)
500 COG0468 RecA RecA/RadA recombi 62.9 11 0.00024 35.4 4.4 77 269-345 123-201 (279)
No 1
>KOG0733|consensus
Probab=100.00 E-value=6.3e-68 Score=515.65 Aligned_cols=296 Identities=34% Similarity=0.472 Sum_probs=254.4
Q ss_pred CCCccCC----CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc
Q psy3629 1 MDGVERL----NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT 76 (358)
Q Consensus 1 lDg~~~~----~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t 76 (358)
||++... .+|+||||||||+.||||++|+||||+.|.+..|+..+|.+||+..++++ .+..++++++||+.|
T Consensus 317 mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~l----rl~g~~d~~qlA~lT 392 (802)
T KOG0733|consen 317 MDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGL----RLSGDFDFKQLAKLT 392 (802)
T ss_pred hhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhC----CCCCCcCHHHHHhcC
Confidence 6777543 57999999999999999999999999999999999999999999999988 577899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCc---------c---------c-----------------------------cC
Q psy3629 77 KNFSGAELEGLVRAAQSCAMNRLIKATNK---------V---------E-----------------------------VD 109 (358)
Q Consensus 77 ~g~sgadi~~l~~~A~~~a~~r~~~~~~~---------~---------~-----------------------------~~ 109 (358)
+||.||||+++|.+|+..|++|+++.... + . .+
T Consensus 393 PGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S 472 (802)
T KOG0733|consen 393 PGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLS 472 (802)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcC
Confidence 99999999999999999999998873320 0 0 00
Q ss_pred hhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc--hh----hhhhhhhhh---hhhccccccccce
Q psy3629 110 PQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP--VQ----ECLEAGRIF---IQQSKDTESSGLV 180 (358)
Q Consensus 110 ~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~--v~----~~~~~~~~~---~~~~~~~~~~~~~ 180 (358)
.+..+...++.+||++|+.. ++|+. ..++|..+|.++|.|. .+ ++...+.+. .+.++..+...+.
T Consensus 473 ~E~~~~L~i~~eDF~~Al~~-iQPSa-----kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~Ps 546 (802)
T KOG0733|consen 473 KELLEGLSIKFEDFEEALSK-IQPSA-----KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPS 546 (802)
T ss_pred hHHhccceecHHHHHHHHHh-cCcch-----hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCC
Confidence 12334567899999999999 99996 5678889999999992 11 122222222 2456777888899
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDV 259 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 259 (358)
|+||+|| ||| ||.+ |+++ |++.+.+|+.+.+|+++++|+|+||.+
T Consensus 547 GvLL~GP--PGCGKTLl---AKAV---------------ANEag~NFisVKGPELlNkYVGESErA-------------- 592 (802)
T KOG0733|consen 547 GVLLCGP--PGCGKTLL---AKAV---------------ANEAGANFISVKGPELLNKYVGESERA-------------- 592 (802)
T ss_pred ceEEeCC--CCccHHHH---HHHH---------------hhhccCceEeecCHHHHHHHhhhHHHH--------------
Confidence 9999999 999 9999 9999 999999999999999988888776665
Q ss_pred cccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCC
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNR 339 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 339 (358)
||+||++||+++||||||||+|+|++.|+..+.. ++.||+||||+||||++.+.+|+|||||||
T Consensus 593 --------------VR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~--~s~RvvNqLLtElDGl~~R~gV~viaATNR 656 (802)
T KOG0733|consen 593 --------------VRQVFQRARASAPCVIFFDEIDALVPRRSDEGSS--VSSRVVNQLLTELDGLEERRGVYVIAATNR 656 (802)
T ss_pred --------------HHHHHHHhhcCCCeEEEecchhhcCcccCCCCch--hHHHHHHHHHHHhcccccccceEEEeecCC
Confidence 5555999999999999999999999999876644 889999999999999999999999999999
Q ss_pred ccccchhcCCCCCCccc
Q psy3629 340 RDMIDEALLRPGRLEVS 356 (358)
Q Consensus 340 ~~~iD~a~lr~GRfd~~ 356 (358)
||.||||+|||||||..
T Consensus 657 PDiIDpAiLRPGRlDk~ 673 (802)
T KOG0733|consen 657 PDIIDPAILRPGRLDKL 673 (802)
T ss_pred CcccchhhcCCCccCce
Confidence 99999999999999974
No 2
>KOG0730|consensus
Probab=100.00 E-value=3.8e-60 Score=467.01 Aligned_cols=275 Identities=37% Similarity=0.519 Sum_probs=238.0
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+++||++||+|+.||++++| ||||+.+++..|+..+|.+|++.+.++++ ..++.++..+|..|+||+
T Consensus 312 ~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~----~~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 312 LDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMN----LLSDVDLEDIAVSTHGYV 386 (693)
T ss_pred HhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcC----CcchhhHHHHHHHccchh
Confidence 6889989999999999999999999999 99999999999999999999999999984 557899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc----
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP---- 156 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~---- 156 (358)
|+|+.++|.+|.+.++++ +.++|..|+.. ++|+.. .+...+.++++|+|.
T Consensus 387 GaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~-i~psa~-----Re~~ve~p~v~W~dIGGlE 440 (693)
T KOG0730|consen 387 GADLAALCREASLQATRR--------------------TLEIFQEALMG-IRPSAL-----REILVEMPNVSWDDIGGLE 440 (693)
T ss_pred HHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhc-CCchhh-----hheeccCCCCChhhccCHH
Confidence 999999999999988765 57889999998 999852 233467889999992
Q ss_pred -h-hhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccccccc
Q psy3629 157 -V-QECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAY 230 (358)
Q Consensus 157 -v-~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (358)
+ .++-+.+.+.. ..+..++..+++||||||| ||| ||.+ |+++ |++.+.+|+.+.
T Consensus 441 ~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGP--PGC~KT~l---Akal---------------Ane~~~nFlsvk 500 (693)
T KOG0730|consen 441 ELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGP--PGCGKTLL---AKAL---------------ANEAGMNFLSVK 500 (693)
T ss_pred HHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECC--CCcchHHH---HHHH---------------hhhhcCCeeecc
Confidence 1 12222233332 2345556788999999999 999 9999 9999 999999999999
Q ss_pred CcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcch
Q psy3629 231 SPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGV 310 (358)
Q Consensus 231 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~ 310 (358)
+|++.++|+|++|.+ | +++|.+||+.+||||||||||++++.|+++++ ++
T Consensus 501 gpEL~sk~vGeSEr~-------------i---------------r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--~v 550 (693)
T KOG0730|consen 501 GPELFSKYVGESERA-------------I---------------REVFRKARQVAPCIIFFDEIDALAGSRGGSSS--GV 550 (693)
T ss_pred CHHHHHHhcCchHHH-------------H---------------HHHHHHHhhcCCeEEehhhHHhHhhccCCCcc--ch
Confidence 888866666666555 4 45599999999999999999999999985443 69
Q ss_pred hhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 311 HDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 311 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++||+||||+||||++..++|+|||||||||.||+|+|||||||..
T Consensus 551 ~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~i 596 (693)
T KOG0730|consen 551 TDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRI 596 (693)
T ss_pred HHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCccccee
Confidence 9999999999999999999999999999999999999999999964
No 3
>KOG0736|consensus
Probab=100.00 E-value=3e-53 Score=422.02 Aligned_cols=293 Identities=28% Similarity=0.387 Sum_probs=241.0
Q ss_pred CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 6 RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
+..+++||++|+..+.|++.+++ -|-+.|.++.|+.++|.+||+.|+... .+..++..+.+|.+|.|||.++++
T Consensus 530 ~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~----~~n~~v~~k~~a~~t~gfs~~~L~ 603 (953)
T KOG0736|consen 530 SCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHL----PLNQDVNLKQLARKTSGFSFGDLE 603 (953)
T ss_pred CCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhcc----ccchHHHHHHHHHhcCCCCHHHHH
Confidence 56789999999999999999999 899999999999999999999999876 466789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC---ccccC--hhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCC-----
Q psy3629 86 GLVRAAQSCAMNRLIKATN---KVEVD--PQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGT----- 155 (358)
Q Consensus 86 ~l~~~A~~~a~~r~~~~~~---~~~~~--~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d----- 155 (358)
.++......+..+.....- ..+.. ........++++||-.++.+ ++..+. +-.+..+.|++.|+|
T Consensus 604 ~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~-~~~~fs----~aiGAPKIPnV~WdDVGGLe 678 (953)
T KOG0736|consen 604 ALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR-LQKEFS----DAIGAPKIPNVSWDDVGGLE 678 (953)
T ss_pred HHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH-HHHhhh----hhcCCCCCCccchhcccCHH
Confidence 9998885555555443331 00001 11112367899999999998 554432 233445688999999
Q ss_pred -chhhhhhhhhhhhhh--ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccC
Q psy3629 156 -PVQECLEAGRIFIQQ--SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYS 231 (358)
Q Consensus 156 -~v~~~~~~~~~~~~~--~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
...++++.+...++. +-..+.+...|+||||| ||| ||.+ |+++ |.+....|+.+.+
T Consensus 679 evK~eIldTIqlPL~hpeLfssglrkRSGILLYGP--PGTGKTLl---AKAV---------------ATEcsL~FlSVKG 738 (953)
T KOG0736|consen 679 EVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGP--PGTGKTLL---AKAV---------------ATECSLNFLSVKG 738 (953)
T ss_pred HHHHHHHHHhcCcccChhhhhccccccceeEEECC--CCCchHHH---HHHH---------------HhhceeeEEeecC
Confidence 222344444333322 22223344678999999 999 9999 9999 9999999999999
Q ss_pred cccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh
Q psy3629 232 PDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH 311 (358)
Q Consensus 232 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~ 311 (358)
|+++++|+|+||.+ |+++ |++||+.+||||||||+|+++|.|+.+|+++|++
T Consensus 739 PELLNMYVGqSE~N-------------VR~V---------------FerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVM 790 (953)
T KOG0736|consen 739 PELLNMYVGQSEEN-------------VREV---------------FERARSAAPCVIFFDELDSLAPNRGRSGDSGGVM 790 (953)
T ss_pred HHHHHHHhcchHHH-------------HHHH---------------HHHhhccCCeEEEeccccccCccCCCCCCccccH
Confidence 99999999999888 7777 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHccCCCC--CCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 312 DTVVNQLLSKMDGVE--RLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 312 ~~~~~~lL~~ld~~~--~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
|||++|||.||||+. ..+.|||||||||||.||||+|||||||+.+
T Consensus 791 DRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLv 838 (953)
T KOG0736|consen 791 DRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLV 838 (953)
T ss_pred HHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeE
Confidence 999999999999997 5568999999999999999999999999864
No 4
>KOG0735|consensus
Probab=100.00 E-value=3.1e-47 Score=376.08 Aligned_cols=282 Identities=26% Similarity=0.336 Sum_probs=233.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
+..|.|||+.+....|.|-+..|++|+.++.++.|+..+|.+||+..+++.. ......+++-++..|+||...|+..
T Consensus 539 ~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 539 NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred CcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhHHH
Confidence 3457999999999999999999999999999999999999999999998753 2223456666999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCchhhhhhhhhh
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRI 166 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~v~~~~~~~~~ 166 (358)
++..|...++...+... ...++.++|.++++. ..|..-+. ........++|.| +....+....
T Consensus 616 fVeRai~~a~leris~~-----------~klltke~f~ksL~~-F~P~aLR~----ik~~k~tgi~w~d-igg~~~~k~~ 678 (952)
T KOG0735|consen 616 FVERAIHEAFLERISNG-----------PKLLTKELFEKSLKD-FVPLALRG----IKLVKSTGIRWED-IGGLFEAKKV 678 (952)
T ss_pred HHHHHHHHHHHHHhccC-----------cccchHHHHHHHHHh-cChHHhhh----ccccccCCCCcee-cccHHHHHHH
Confidence 99999999886544433 226899999999998 77762111 1122234588888 3333333333
Q ss_pred hhhhccccc----------cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc
Q psy3629 167 FIQQSKDTE----------SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK 235 (358)
Q Consensus 167 ~~~~~~~~~----------~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
+.+.+.|+. .+-..|+||||| ||| ||.| |.++ +...+..|+.+.+|+++
T Consensus 679 l~~~i~~P~kyp~if~~~plr~~~giLLyGp--pGcGKT~l---a~a~---------------a~~~~~~fisvKGPElL 738 (952)
T KOG0735|consen 679 LEEVIEWPSKYPQIFANCPLRLRTGILLYGP--PGCGKTLL---ASAI---------------ASNSNLRFISVKGPELL 738 (952)
T ss_pred HHHHHhccccchHHHhhCCcccccceEEECC--CCCcHHHH---HHHH---------------HhhCCeeEEEecCHHHH
Confidence 333333332 233588999999 999 9999 9999 99999999999999999
Q ss_pred cccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHH
Q psy3629 236 RGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVV 315 (358)
Q Consensus 236 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~ 315 (358)
++|+|.||.+ |+++ |.+|+..+|||+||||+|+++|+|+.++. |+.+||+
T Consensus 739 ~KyIGaSEq~-------------vR~l---------------F~rA~~a~PCiLFFDEfdSiAPkRGhDsT--GVTDRVV 788 (952)
T KOG0735|consen 739 SKYIGASEQN-------------VRDL---------------FERAQSAKPCILFFDEFDSIAPKRGHDST--GVTDRVV 788 (952)
T ss_pred HHHhcccHHH-------------HHHH---------------HHHhhccCCeEEEeccccccCcccCCCCC--CchHHHH
Confidence 9999999988 8888 99999999999999999999999987654 4999999
Q ss_pred HHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCccccC
Q psy3629 316 NQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSEI 358 (358)
Q Consensus 316 ~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~~ 358 (358)
|||||+|||.++.++|+|+|||.|||.||||+|||||||.+|.
T Consensus 789 NQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~ 831 (952)
T KOG0735|consen 789 NQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVY 831 (952)
T ss_pred HHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeee
Confidence 9999999999999999999999999999999999999999863
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2e-46 Score=393.80 Aligned_cols=298 Identities=36% Similarity=0.536 Sum_probs=242.2
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+...++|+||++||+|+.||++++|+|||+..|++++|+.++|.+||+.+...+ ....+.+++.+++.|+||+
T Consensus 306 ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~----~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 306 MDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM----PLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred hhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC----CCccccCHHHHHHhCCCCC
Confidence 577877889999999999999999999999999999999999999999999988776 4556788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc----cccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNK----VEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP 156 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~----~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~ 156 (358)
++|+..+|+.|++.++++.+..... ..++........++.+||..|+.. ++|+... ..+...+.+.|.+.
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~-v~ps~~~-----~~~~~~~~~~~~di 455 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKM-VEPSAIR-----EVLVEVPNVRWSDI 455 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhh-ccccccc-----hhhccccccchhhc
Confidence 9999999999999999987763321 112223334567899999999998 8887522 23344567788772
Q ss_pred h------hhhhhhhhhh---hhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 157 V------QECLEAGRIF---IQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 157 v------~~~~~~~~~~---~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
. +.+.+...+. .+.++..+..++.++||||| ||| ||.+ |+++ +.+.+.+|
T Consensus 456 ~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~Gp--pGtGKT~l---akal---------------A~e~~~~f 515 (733)
T TIGR01243 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGP--PGTGKTLL---AKAV---------------ATESGANF 515 (733)
T ss_pred ccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECC--CCCCHHHH---HHHH---------------HHhcCCCE
Confidence 1 1122222221 12234445667899999999 999 9999 9999 88888999
Q ss_pred ccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC
Q psy3629 227 TLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG 306 (358)
Q Consensus 227 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~ 306 (358)
+.+.++++.++|+|+++.. ++.+ |+.|+..+||||||||||++++.|+...
T Consensus 516 i~v~~~~l~~~~vGese~~-------------i~~~---------------f~~A~~~~p~iifiDEid~l~~~r~~~~- 566 (733)
T TIGR01243 516 IAVRGPEILSKWVGESEKA-------------IREI---------------FRKARQAAPAIIFFDEIDAIAPARGARF- 566 (733)
T ss_pred EEEehHHHhhcccCcHHHH-------------HHHH---------------HHHHHhcCCEEEEEEChhhhhccCCCCC-
Confidence 9998888777777766665 5555 9999999999999999999999987543
Q ss_pred CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 307 NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 307 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
.++..++++++||++|||+...++|+||||||+|+.||+|++||||||..+
T Consensus 567 ~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i 617 (733)
T TIGR01243 567 DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLI 617 (733)
T ss_pred CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEE
Confidence 334779999999999999988889999999999999999999999999753
No 6
>KOG0741|consensus
Probab=100.00 E-value=1.2e-43 Score=341.27 Aligned_cols=293 Identities=53% Similarity=0.799 Sum_probs=270.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+++-++|+|||.|||++.||+|++|||||+-++++.+||+..|.+|++.|.++|..+..+..++|+++||.+|.+||
T Consensus 361 mDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 361 MDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFS 440 (744)
T ss_pred cccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCc
Confidence 79999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCchhhh
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQEC 160 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~v~~~ 160 (358)
||+|+.+++.|...|+.|.++.......++...+...|++.||..|++. ++|+++.+.+++..+...+.+.|...+.++
T Consensus 441 GAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~d-VkPAFG~see~l~~~~~~Gmi~~g~~v~~i 519 (744)
T KOG0741|consen 441 GAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALED-VKPAFGISEEDLERFVMNGMINWGPPVTRI 519 (744)
T ss_pred hhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHh-cCcccCCCHHHHHHHHhCCceeecccHHHH
Confidence 9999999999999999999988866777888889999999999999996 999999999999999999999999999999
Q ss_pred hhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccc
Q psy3629 161 LEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFI 239 (358)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
++.+..+.++++....++..++||+|| ||+ ||.| |+.+ |....+||+++..|+. ++
T Consensus 520 l~~G~llv~qvk~s~~s~lvSvLl~Gp--~~sGKTaL---AA~i---------------A~~S~FPFvKiiSpe~---mi 576 (744)
T KOG0741|consen 520 LDDGKLLVQQVKNSERSPLVSVLLEGP--PGSGKTAL---AAKI---------------ALSSDFPFVKIISPED---MI 576 (744)
T ss_pred HhhHHHHHHHhhccccCcceEEEEecC--CCCChHHH---HHHH---------------HhhcCCCeEEEeChHH---cc
Confidence 999999999999999999999999999 999 9999 9999 9999999999999998 89
Q ss_pred cccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHH
Q psy3629 240 GFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLL 319 (358)
Q Consensus 240 g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL 319 (358)
|.+|.+ ||+. ++++ |+.|+++.-+||++|+|+.|+.. .+-|+. .++.++..|+
T Consensus 577 G~sEsa-------Kc~~--i~k~---------------F~DAYkS~lsiivvDdiErLiD~-vpIGPR--fSN~vlQaL~ 629 (744)
T KOG0741|consen 577 GLSESA-------KCAH--IKKI---------------FEDAYKSPLSIIVVDDIERLLDY-VPIGPR--FSNLVLQALL 629 (744)
T ss_pred CccHHH-------HHHH--HHHH---------------HHHhhcCcceEEEEcchhhhhcc-cccCch--hhHHHHHHHH
Confidence 999998 3333 5555 99999999999999999999987 555666 7888999998
Q ss_pred HccCCCCC-CCCEEEEEecCCccccc
Q psy3629 320 SKMDGVER-LNNILVIGMTNRRDMID 344 (358)
Q Consensus 320 ~~ld~~~~-~~~v~vi~aTn~~~~iD 344 (358)
..+....+ +.+.+|+|||.+.+.|-
T Consensus 630 VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 630 VLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred HHhccCCCCCceEEEEecccHHHHHH
Confidence 88887643 35799999998876553
No 7
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-42 Score=345.36 Aligned_cols=285 Identities=33% Similarity=0.441 Sum_probs=234.0
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+. ...++++++||++..+|+++.|+|||+..++++.|+...|.++++.+...+ ....+.+.+.++..+.|++
T Consensus 111 ~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~----~~~~~~~~~~~a~~~~~~~ 185 (494)
T COG0464 111 MDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLM----FLGPPGTGKTLAARTVGKS 185 (494)
T ss_pred ccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcC----CCcccccHHHHHHhcCCcc
Confidence 57777 444999999999999999999999999999999999999999999998776 3445789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc----
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP---- 156 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~---- 156 (358)
++++..+|..+.+.++++.+. .......++.+||.++++. +.|+. ......+.+.|.+.
T Consensus 186 ~~~~~~l~~~~~~~~~~r~~~---------~~~~~~~~~~~~~~~~l~~-~~~~~-------~~~~~~~~v~~~diggl~ 248 (494)
T COG0464 186 GADLGALAKEAALRELRRAID---------LVGEYIGVTEDDFEEALKK-VLPSR-------GVLFEDEDVTLDDIGGLE 248 (494)
T ss_pred HHHHHHHHHHHHHHHHHhhhc---------cCcccccccHHHHHHHHHh-cCccc-------ccccCCCCcceehhhcHH
Confidence 999999999999999888540 1123456899999999999 76650 11123445667762
Q ss_pred --hhhhhhhhhhhhhh---ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccccccc
Q psy3629 157 --VQECLEAGRIFIQQ---SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAY 230 (358)
Q Consensus 157 --v~~~~~~~~~~~~~---~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (358)
.+.+.+...+...+ +...+..++.++||+|| ||| ||++ |+++ +.+.+.+|+.+.
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~Gp--PGtGKT~l---Akav---------------a~~~~~~fi~v~ 308 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGP--PGTGKTLL---AKAV---------------ALESRSRFISVK 308 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECC--CCCCHHHH---HHHH---------------HhhCCCeEEEee
Confidence 22233333333322 23334567889999999 999 9999 9999 999999999999
Q ss_pred CcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcch
Q psy3629 231 SPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGV 310 (358)
Q Consensus 231 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~ 310 (358)
++++.++|+|+++.+ |+.+ |..|++.+||||||||+|++++.|+.+... .
T Consensus 309 ~~~l~sk~vGesek~-------------ir~~---------------F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~ 358 (494)
T COG0464 309 GSELLSKWVGESEKN-------------IREL---------------FEKARKLAPSIIFIDEIDSLASGRGPSEDG--S 358 (494)
T ss_pred CHHHhccccchHHHH-------------HHHH---------------HHHHHcCCCcEEEEEchhhhhccCCCCCch--H
Confidence 888888888777666 5555 999999999999999999999999765443 4
Q ss_pred hhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 311 HDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 311 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
..|++++||++|||++...+|+||+|||+||.||+|++||||||.+.
T Consensus 359 ~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i 405 (494)
T COG0464 359 GRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLI 405 (494)
T ss_pred HHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEe
Confidence 47999999999999999999999999999999999999999999763
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=295.98 Aligned_cols=159 Identities=28% Similarity=0.331 Sum_probs=139.3
Q ss_pred ccCCCchhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 151 LNWGTPVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 151 ~~~~d~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
++++++++++-+.+.+.+ ..+...+..||+|+||||| ||| ||.| |+++ |...++.|
T Consensus 154 GGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGP--PGTGKTLL---AkAV---------------A~~T~AtF 213 (406)
T COG1222 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGP--PGTGKTLL---AKAV---------------ANQTDATF 213 (406)
T ss_pred cCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCC--CCCcHHHH---HHHH---------------HhccCceE
Confidence 334446777777776654 3467778899999999999 999 9999 9999 99999999
Q ss_pred ccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC
Q psy3629 227 TLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG 306 (358)
Q Consensus 227 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~ 306 (358)
+.+.++++..+|+|++.+. |+++ |+.||..+||||||||||+|..+|..++.
T Consensus 214 IrvvgSElVqKYiGEGaRl-------------VRel---------------F~lArekaPsIIFiDEIDAIg~kR~d~~t 265 (406)
T COG1222 214 IRVVGSELVQKYIGEGARL-------------VREL---------------FELAREKAPSIIFIDEIDAIGAKRFDSGT 265 (406)
T ss_pred EEeccHHHHHHHhccchHH-------------HHHH---------------HHHHhhcCCeEEEEechhhhhcccccCCC
Confidence 9999999999999999888 7778 99999999999999999999999966543
Q ss_pred C-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 307 N-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 307 ~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+ ....+|.+-+||++|||++++++|=||+||||||.||||+|||||||.++
T Consensus 266 ~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkI 317 (406)
T COG1222 266 SGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKI 317 (406)
T ss_pred CchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccccee
Confidence 3 22346777799999999999999999999999999999999999999874
No 9
>KOG0734|consensus
Probab=100.00 E-value=7.9e-34 Score=273.87 Aligned_cols=134 Identities=31% Similarity=0.396 Sum_probs=125.1
Q ss_pred ccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhc
Q psy3629 175 ESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSL 253 (358)
Q Consensus 175 ~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 253 (358)
+-.-|+|+||.|| ||| ||+| |+++ |.+.+.||+...++++--.|+|...+.
T Consensus 333 GGKLPKGVLLvGP--PGTGKTlL---ARAv---------------AGEA~VPFF~~sGSEFdEm~VGvGArR-------- 384 (752)
T KOG0734|consen 333 GGKLPKGVLLVGP--PGTGKTLL---ARAV---------------AGEAGVPFFYASGSEFDEMFVGVGARR-------- 384 (752)
T ss_pred cCcCCCceEEeCC--CCCchhHH---HHHh---------------hcccCCCeEeccccchhhhhhcccHHH--------
Confidence 3455899999999 999 9999 9999 999999999999999999999999888
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEE
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILV 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v 333 (358)
|+++ |..||+.+||||||||||++.++|.+...+ +.+..+||||.||||+.+..+|||
T Consensus 385 -----VRdL---------------F~aAk~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 385 -----VRDL---------------FAAAKARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred -----HHHH---------------HHHHHhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcCcCCceEE
Confidence 8888 999999999999999999999999876555 788999999999999999999999
Q ss_pred EEecCCccccchhcCCCCCCccccC
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVSEI 358 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~~~ 358 (358)
|||||+||.||+|++||||||++|.
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVT 467 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEe
Confidence 9999999999999999999999873
No 10
>KOG0733|consensus
Probab=99.97 E-value=3.3e-33 Score=273.23 Aligned_cols=137 Identities=31% Similarity=0.386 Sum_probs=123.4
Q ss_pred hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHH
Q psy3629 169 QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRK 247 (358)
Q Consensus 169 ~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 247 (358)
..+..++..|++|+||+|| ||| ||+| |+++ |.+.+.||+.+.++++.+++.|+||..
T Consensus 213 e~~~~lGv~PprGvLlHGP--PGCGKT~l---A~Ai---------------Agel~vPf~~isApeivSGvSGESEkk-- 270 (802)
T KOG0733|consen 213 EVFSSLGVRPPRGVLLHGP--PGCGKTSL---ANAI---------------AGELGVPFLSISAPEIVSGVSGESEKK-- 270 (802)
T ss_pred hhHhhcCCCCCCceeeeCC--CCccHHHH---HHHH---------------hhhcCCceEeecchhhhcccCcccHHH--
Confidence 4567788899999999999 999 9999 9999 999999999999999988888877766
Q ss_pred HHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC
Q psy3629 248 WAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER 327 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~ 327 (358)
|+++ |..|+.++||||||||||+|.++|...+.. -.+|+++|||+.||++..
T Consensus 271 -----------iRel---------------F~~A~~~aPcivFiDeIDAI~pkRe~aqre--MErRiVaQLlt~mD~l~~ 322 (802)
T KOG0733|consen 271 -----------IREL---------------FDQAKSNAPCIVFIDEIDAITPKREEAQRE--MERRIVAQLLTSMDELSN 322 (802)
T ss_pred -----------HHHH---------------HHHHhccCCeEEEeecccccccchhhHHHH--HHHHHHHHHHHhhhcccc
Confidence 6666 999999999999999999999999764433 678999999999999854
Q ss_pred C----CCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 328 L----NNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 328 ~----~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
. ..|+|||||||||.|||||.|+||||.
T Consensus 323 ~~~~g~~VlVIgATnRPDslDpaLRRaGRFdr 354 (802)
T KOG0733|consen 323 EKTKGDPVLVIGATNRPDSLDPALRRAGRFDR 354 (802)
T ss_pred cccCCCCeEEEecCCCCcccCHHHhccccccc
Confidence 3 579999999999999999999999996
No 11
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.4e-31 Score=266.63 Aligned_cols=267 Identities=16% Similarity=0.145 Sum_probs=181.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
.++.+||.+.+ ..|++.+.+ +-..+++|+|+.+++.++++.+..... ...++..++.+++.+.|+|-.++++
T Consensus 113 ~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~---~~~~~~~~~~l~~~~~gls~~~~~~ 184 (489)
T CHL00195 113 QPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLN---IKIDSELLENLTRACQGLSLERIRR 184 (489)
T ss_pred CCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 34455555543 456777765 347889999999999999988775432 3456788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCC------chhhh
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGT------PVQEC 160 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d------~v~~~ 160 (358)
++..+... .+ .++.+++...++. .+.....+ ..-.+. .+..+|++ ..+.+
T Consensus 185 ~~~~~~~~-------~~-------------~~~~~~~~~i~~~-k~q~~~~~--~~le~~-~~~~~~~dvgGl~~lK~~l 240 (489)
T CHL00195 185 VLSKIIAT-------YK-------------TIDENSIPLILEE-KKQIISQT--EILEFY-SVNEKISDIGGLDNLKDWL 240 (489)
T ss_pred HHHHHHHH-------cC-------------CCChhhHHHHHHH-HHHHHhhh--cccccc-CCCCCHHHhcCHHHHHHHH
Confidence 98875321 01 1222221111111 00000000 000000 01112222 11122
Q ss_pred hhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccc
Q psy3629 161 LEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFI 239 (358)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
.+....+....+.++...++|+||+|| ||| ||.+ |+++ +.+.+.+++.+..+.+.++|+
T Consensus 241 ~~~~~~~~~~~~~~gl~~pkGILL~GP--pGTGKTll---Akai---------------A~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 241 KKRSTSFSKQASNYGLPTPRGLLLVGI--QGTGKSLT---AKAI---------------ANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred HHHHHHhhHHHHhcCCCCCceEEEECC--CCCcHHHH---HHHH---------------HHHhCCCEEEEEhHHhccccc
Confidence 222222334455667778899999999 999 9999 9999 888999999887666655566
Q ss_pred cccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHH
Q psy3629 240 GFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLL 319 (358)
Q Consensus 240 g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL 319 (358)
|+++.. ++++|+.|+..+||||||||||.++..+...+ .++...|++++||
T Consensus 301 Gese~~----------------------------l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL 351 (489)
T CHL00195 301 GESESR----------------------------MRQMIRIAEALSPCILWIDEIDKAFSNSESKG-DSGTTNRVLATFI 351 (489)
T ss_pred ChHHHH----------------------------HHHHHHHHHhcCCcEEEehhhhhhhccccCCC-CchHHHHHHHHHH
Confidence 555554 45559999999999999999999998754332 3457899999999
Q ss_pred HccCCCCCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 320 SKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 320 ~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
+.|++.. .+|+||||||+|+.||+|++||||||..
T Consensus 352 ~~l~~~~--~~V~vIaTTN~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 352 TWLSEKK--SPVFVVATANNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred HHHhcCC--CceEEEEecCChhhCCHHHhCCCcCCeE
Confidence 9999644 4799999999999999999999999965
No 12
>KOG0727|consensus
Probab=99.97 E-value=6.6e-32 Score=240.21 Aligned_cols=162 Identities=29% Similarity=0.338 Sum_probs=139.3
Q ss_pred cCcccCCC------chhhhhhhhhhh---hhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccc
Q psy3629 148 RGILNWGT------PVQECLEAGRIF---IQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVT 217 (358)
Q Consensus 148 ~~~~~~~d------~v~~~~~~~~~~---~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~ 217 (358)
.|.+.|.| +.|++.+..... .+.++.++..|++|+|+||| ||| ||+| ++++
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygp--pg~gktml---~kav-------------- 209 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGP--PGTGKTML---AKAV-------------- 209 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCC--CCCcHHHH---HHHH--------------
Confidence 44455554 445555555543 35578888899999999999 999 9999 9999
Q ss_pred cCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 218 TGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
+......|+.+.++++..+|.|++.+. ++++ |..|++++|+||||||||+|
T Consensus 210 -a~~t~a~firvvgsefvqkylgegprm-------------vrdv---------------frlakenapsiifideidai 260 (408)
T KOG0727|consen 210 -ANHTTAAFIRVVGSEFVQKYLGEGPRM-------------VRDV---------------FRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred -hhccchheeeeccHHHHHHHhccCcHH-------------HHHH---------------HHHHhccCCcEEEeehhhhH
Confidence 999999999999999999999999998 8888 99999999999999999999
Q ss_pred hhhcCCCC-CCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 298 CKARGTAG-GNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 298 ~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+.+|-... +......|++-.||+.|||+.+..+|-||+||||.|.||||+|||||+|.+.
T Consensus 261 atkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrki 321 (408)
T KOG0727|consen 261 ATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 321 (408)
T ss_pred hhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccc
Confidence 99995543 2333557899999999999999999999999999999999999999999873
No 13
>KOG0729|consensus
Probab=99.97 E-value=5.7e-31 Score=235.83 Aligned_cols=140 Identities=31% Similarity=0.406 Sum_probs=126.1
Q ss_pred hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHH
Q psy3629 169 QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRK 247 (358)
Q Consensus 169 ~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 247 (358)
.....++..|++|+|+||| ||| ||.+ |+++ ++..+..|+.+.++++..+|+|+..+.
T Consensus 201 erfv~lgidppkgvllygp--pgtgktl~---arav---------------anrtdacfirvigselvqkyvgegarm-- 258 (435)
T KOG0729|consen 201 ERFVNLGIDPPKGVLLYGP--PGTGKTLC---ARAV---------------ANRTDACFIRVIGSELVQKYVGEGARM-- 258 (435)
T ss_pred HHHhhcCCCCCCceEEeCC--CCCchhHH---HHHH---------------hcccCceEEeehhHHHHHHHhhhhHHH--
Confidence 5566778889999999999 999 9999 9999 999999999999999999999999888
Q ss_pred HHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC--CCCcchhhHHHHHHHHccCCC
Q psy3629 248 WAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA--GGNTGVHDTVVNQLLSKMDGV 325 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~--~~~~~~~~~~~~~lL~~ld~~ 325 (358)
|+++ |++||...-|||||||||++.+.|-.+ ++.+.++.. +-.|++.+||+
T Consensus 259 -----------vrel---------------f~martkkaciiffdeidaiggarfddg~ggdnevqrt-mleli~qldgf 311 (435)
T KOG0729|consen 259 -----------VREL---------------FEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRT-MLELINQLDGF 311 (435)
T ss_pred -----------HHHH---------------HHHhcccceEEEEeeccccccCccccCCCCCcHHHHHH-HHHHHHhccCC
Confidence 7777 999999999999999999999999554 333434444 44899999999
Q ss_pred CCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 326 ERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 326 ~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
..+.++-|++||||||.||||+|||||+|.+|
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrkv 343 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRKV 343 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccce
Confidence 99999999999999999999999999999986
No 14
>KOG0731|consensus
Probab=99.96 E-value=1.9e-30 Score=263.73 Aligned_cols=141 Identities=31% Similarity=0.454 Sum_probs=127.7
Q ss_pred hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHH
Q psy3629 169 QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRK 247 (358)
Q Consensus 169 ~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 247 (358)
+++...+...|+|+||.|| ||| ||.| |+++ |.+.+.||+.++++++.-.++|.....
T Consensus 334 ~~Y~~lGAKiPkGvLL~GP--PGTGKTLL---AKAi---------------AGEAgVPF~svSGSEFvE~~~g~~asr-- 391 (774)
T KOG0731|consen 334 EQYQELGAKIPKGVLLVGP--PGTGKTLL---AKAI---------------AGEAGVPFFSVSGSEFVEMFVGVGASR-- 391 (774)
T ss_pred HHHHHcCCcCcCceEEECC--CCCcHHHH---HHHH---------------hcccCCceeeechHHHHHHhcccchHH--
Confidence 4567778888999999999 999 9999 9999 999999999999999999999988666
Q ss_pred HHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCC--CCCCcchhhHHHHHHHHccCCC
Q psy3629 248 WAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGT--AGGNTGVHDTVVNQLLSKMDGV 325 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~--~~~~~~~~~~~~~~lL~~ld~~ 325 (358)
++++ |..||.++|||||+||||++...|++ .+..++....-+||||+||||+
T Consensus 392 -----------vr~l---------------f~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 392 -----------VRDL---------------FPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -----------HHHH---------------HHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 7778 99999999999999999999999953 2334445677999999999999
Q ss_pred CCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 326 ERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 326 ~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
....+|+|+|+|||||.||+|+|||||||.++
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i 477 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQI 477 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccce
Confidence 98889999999999999999999999999874
No 15
>KOG0728|consensus
Probab=99.96 E-value=2.5e-30 Score=229.89 Aligned_cols=157 Identities=27% Similarity=0.342 Sum_probs=132.8
Q ss_pred CCCchhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccccc
Q psy3629 153 WGTPVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTL 228 (358)
Q Consensus 153 ~~d~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (358)
++.+++++-+...... .....++...++|+||||| ||+ ||.+ |++. +....+.|+.
T Consensus 152 Ld~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygp--pgtGktLl---araV---------------ahht~c~fir 211 (404)
T KOG0728|consen 152 LDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGP--PGTGKTLL---ARAV---------------AHHTDCTFIR 211 (404)
T ss_pred HHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecC--CCCchhHH---HHHH---------------HhhcceEEEE
Confidence 3345555555555443 3356667778999999999 999 9999 9999 9999999999
Q ss_pred ccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-
Q psy3629 229 AYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN- 307 (358)
Q Consensus 229 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~- 307 (358)
++++++..+|+|+..+. ++++ |-+||+.+|+|||+||||+|..+|..+++.
T Consensus 212 vsgselvqk~igegsrm-------------vrel---------------fvmarehapsiifmdeidsigs~r~e~~~gg 263 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRM-------------VREL---------------FVMAREHAPSIIFMDEIDSIGSSRVESGSGG 263 (404)
T ss_pred echHHHHHHHhhhhHHH-------------HHHH---------------HHHHHhcCCceEeeecccccccccccCCCCc
Confidence 99999999999999988 8888 999999999999999999999999665432
Q ss_pred cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 308 TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 308 ~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+....|..-.||+.+||++..+++-||+||||+|.||||+|||||.|.+.
T Consensus 264 dsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrki 313 (404)
T KOG0728|consen 264 DSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKI 313 (404)
T ss_pred cHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccc
Confidence 22334555599999999999999999999999999999999999999873
No 16
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.4e-30 Score=255.76 Aligned_cols=140 Identities=32% Similarity=0.452 Sum_probs=125.4
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
+...+..-|+|+++.|| ||| ||.+ |+++ +.+.+.||+.++++++.-.|+|.....
T Consensus 175 y~~lGakiPkGvlLvGp--PGTGKTLL---AkAv---------------AgEA~VPFf~iSGS~FVemfVGvGAsR---- 230 (596)
T COG0465 175 YQALGAKIPKGVLLVGP--PGTGKTLL---AKAV---------------AGEAGVPFFSISGSDFVEMFVGVGASR---- 230 (596)
T ss_pred hHhcccccccceeEecC--CCCCcHHH---HHHH---------------hcccCCCceeccchhhhhhhcCCCcHH----
Confidence 44445667899999999 999 9999 9999 999999999999999999999998887
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERL 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~ 328 (358)
++++ |++|++++||||||||||++...|+.. |+.+..-...+||||+||||++..
T Consensus 231 ---------VRdL---------------F~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 231 ---------VRDL---------------FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ---------HHHH---------------HHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 8888 999999999999999999999999654 333333456999999999999988
Q ss_pred CCEEEEEecCCccccchhcCCCCCCccccC
Q psy3629 329 NNILVIGMTNRRDMIDEALLRPGRLEVSEI 358 (358)
Q Consensus 329 ~~v~vi~aTn~~~~iD~a~lr~GRfd~~~~ 358 (358)
..|+||++|||||.+|+|+|||||||.+++
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~ 316 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQIL 316 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeee
Confidence 899999999999999999999999999864
No 17
>KOG0738|consensus
Probab=99.96 E-value=2.8e-30 Score=241.67 Aligned_cols=157 Identities=27% Similarity=0.321 Sum_probs=126.3
Q ss_pred cCcccCCCchhhhhhhhhhhh---------hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccc
Q psy3629 148 RGILNWGTPVQECLEAGRIFI---------QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVT 217 (358)
Q Consensus 148 ~~~~~~~d~v~~~~~~~~~~~---------~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~ 217 (358)
.+++.|+| +..+-+....+. ..+-.-..+|++|+|++|| ||| ||+| |+++
T Consensus 206 np~ikW~D-Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GP--PGTGKTlL---AKAv-------------- 265 (491)
T KOG0738|consen 206 NPNIKWDD-IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGP--PGTGKTLL---AKAV-------------- 265 (491)
T ss_pred CCCcChHh-hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCC--CCCcHHHH---HHHH--------------
Confidence 56788998 333333322222 1222223578999999999 999 9999 9999
Q ss_pred cCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 218 TGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
+.+.+..||.|..+.+.++ |-|+|||.||.+|+.||..+|++|||||||+|
T Consensus 266 -ATEc~tTFFNVSsstltSK----------------------------wRGeSEKlvRlLFemARfyAPStIFiDEIDsl 316 (491)
T KOG0738|consen 266 -ATECGTTFFNVSSSTLTSK----------------------------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 316 (491)
T ss_pred -HHhhcCeEEEechhhhhhh----------------------------hccchHHHHHHHHHHHHHhCCceeehhhHHHH
Confidence 9999999999987666444 55667777788899999999999999999999
Q ss_pred hhhcCCCCCCcchhhHHHHHHHHccCCCCCC-CC---EEEEEecCCccccchhcCCCCCCccc
Q psy3629 298 CKARGTAGGNTGVHDTVVNQLLSKMDGVERL-NN---ILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 298 ~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~-~~---v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
+.+|+.++. +..++|+.+.||..|||+.+. .+ |+|+||||.||.||+|++| ||++.
T Consensus 317 cs~RG~s~E-HEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKR 376 (491)
T KOG0738|consen 317 CSQRGGSSE-HEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKR 376 (491)
T ss_pred HhcCCCccc-hhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhh
Confidence 999987754 458899999999999999543 33 9999999999999999999 99875
No 18
>KOG0741|consensus
Probab=99.96 E-value=2.1e-30 Score=249.97 Aligned_cols=142 Identities=51% Similarity=0.735 Sum_probs=121.9
Q ss_pred hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHH
Q psy3629 169 QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRK 247 (358)
Q Consensus 169 ~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 247 (358)
..++.++..-.+|+||||| ||| ||.+ |+++++-+- |. +=..+++|+.+++|+|+||.+
T Consensus 246 ~vie~lGi~HVKGiLLyGP--PGTGKTLi---ARqIGkMLN----------Ar----ePKIVNGPeIL~KYVGeSE~N-- 304 (744)
T KOG0741|consen 246 EVIEQLGIKHVKGILLYGP--PGTGKTLI---ARQIGKMLN----------AR----EPKIVNGPEILNKYVGESEEN-- 304 (744)
T ss_pred HHHHHcCccceeeEEEECC--CCCChhHH---HHHHHHHhc----------CC----CCcccCcHHHHHHhhcccHHH--
Confidence 4456666667799999999 999 9999 999943210 22 235678899988888888888
Q ss_pred HHhhhccccccccccccCCCCchhHHHHHHhhcCCC--------CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHH
Q psy3629 248 WAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPN--------SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLL 319 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~--------~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL 319 (358)
|+++ |+.|.+ +.-.||+|||||+||..|+..++++++.+.|+||||
T Consensus 305 -----------vR~L---------------FaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLL 358 (744)
T KOG0741|consen 305 -----------VRKL---------------FADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLL 358 (744)
T ss_pred -----------HHHH---------------HHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHH
Confidence 7777 887764 667899999999999999998888899999999999
Q ss_pred HccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 320 SKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 320 ~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+.|||+++.++++|||.|||+|+||+|+||||||++++
T Consensus 359 sKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqm 396 (744)
T KOG0741|consen 359 SKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQM 396 (744)
T ss_pred HhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999874
No 19
>KOG0739|consensus
Probab=99.96 E-value=6.4e-30 Score=232.11 Aligned_cols=158 Identities=26% Similarity=0.324 Sum_probs=129.2
Q ss_pred hhcCcccCCCchhhh-------hhhhhhh--hhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccc
Q psy3629 146 LSRGILNWGTPVQEC-------LEAGRIF--IQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIE 215 (358)
Q Consensus 146 ~~~~~~~~~d~v~~~-------~~~~~~~--~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~ 215 (358)
...|++.|+| +..+ -+.+.+. +.++-.-+..|++++||||| ||| |+-| |+++
T Consensus 125 ~EKPNVkWsD-VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGP--PGTGKSYL---AKAV------------ 186 (439)
T KOG0739|consen 125 REKPNVKWSD-VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGP--PGTGKSYL---AKAV------------ 186 (439)
T ss_pred ccCCCCchhh-hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCC--CCCcHHHH---HHHH------------
Confidence 3467899998 3322 2222221 13333344678999999999 999 9999 9999
Q ss_pred cccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccch
Q psy3629 216 VTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEID 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD 295 (358)
|.+.+..|+.++.+++.++|+|+|+.. |+.+ |+.||++.|+||||||||
T Consensus 187 ---ATEAnSTFFSvSSSDLvSKWmGESEkL-------------VknL---------------FemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 187 ---ATEANSTFFSVSSSDLVSKWMGESEKL-------------VKNL---------------FEMARENKPSIIFIDEID 235 (439)
T ss_pred ---HhhcCCceEEeehHHHHHHHhccHHHH-------------HHHH---------------HHHHHhcCCcEEEeehhh
Confidence 999999999999999988888776555 4444 999999999999999999
Q ss_pred hhhhhcCCCCCCcchhhHHHHHHHHccCCCCCC-CCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 296 AICKARGTAGGNTGVHDTVVNQLLSKMDGVERL-NNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 296 ~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~-~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++|++|+.+.+. .++|+...||.+|+|+... ++|+|+||||-||.||.|+.| ||+..
T Consensus 236 slcg~r~enEse--asRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekR 293 (439)
T KOG0739|consen 236 SLCGSRSENESE--ASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKR 293 (439)
T ss_pred hhccCCCCCchH--HHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--Hhhcc
Confidence 999999765444 7899999999999999654 479999999999999999999 99975
No 20
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.3e-29 Score=239.05 Aligned_cols=136 Identities=13% Similarity=0.047 Sum_probs=111.3
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
+...+.+++++++|||| ||| ||++ |+++ +.+.+.+++.+.++++.++|+|+++..
T Consensus 140 l~~~~ik~PlgllL~GP--PGcGKTll---Arai---------------A~elg~~~i~vsa~eL~sk~vGEsEk~---- 195 (413)
T PLN00020 140 LALPNIKVPLILGIWGG--KGQGKSFQ---CELV---------------FKKMGIEPIVMSAGELESENAGEPGKL---- 195 (413)
T ss_pred hhccCCCCCeEEEeeCC--CCCCHHHH---HHHH---------------HHHcCCCeEEEEHHHhhcCcCCcHHHH----
Confidence 33456688999999999 999 9999 9999 889999999988777766666655555
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCC-----CCceEEEEccchhhhhhcCCCCCCcchhhHHH-HHHHHccC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPN-----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVV-NQLLSKMD 323 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~-----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~-~~lL~~ld 323 (358)
++++|+.|++ .+||||||||||++++.|+.. ...+.++++ ++||+.||
T Consensus 196 ------------------------IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 196 ------------------------IRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIAD 249 (413)
T ss_pred ------------------------HHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhc
Confidence 5555999975 579999999999999999733 233556665 79999998
Q ss_pred CC------------CCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 324 GV------------ERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 324 ~~------------~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++ +...+|+||+|||+|+.||||++||||||..
T Consensus 250 ~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 250 NPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred CCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 74 2345799999999999999999999999974
No 21
>KOG0726|consensus
Probab=99.95 E-value=4.1e-29 Score=226.24 Aligned_cols=160 Identities=23% Similarity=0.309 Sum_probs=135.5
Q ss_pred cccCCCchhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccc
Q psy3629 150 ILNWGTPVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYI 225 (358)
Q Consensus 150 ~~~~~d~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (358)
..+++.++|++-+...+.+ ..+...+..+++|++|||+ ||| ||.| |+++ |+.....
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~--PGTGKTLL---AKAV---------------ANqTSAT 246 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGE--PGTGKTLL---AKAV---------------ANQTSAT 246 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCC--CCCchhHH---HHHH---------------hcccchh
Confidence 3455557777777766643 5678888999999999999 999 9999 9999 9999999
Q ss_pred cccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC
Q psy3629 226 FTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG 305 (358)
Q Consensus 226 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~ 305 (358)
|+.+.++++..+|.|..... ++++ |+.|..++|+|+||||||++..+|-.++
T Consensus 247 FlRvvGseLiQkylGdGpkl-------------vRql---------------F~vA~e~apSIvFiDEIdAiGtKRyds~ 298 (440)
T KOG0726|consen 247 FLRVVGSELIQKYLGDGPKL-------------VREL---------------FRVAEEHAPSIVFIDEIDAIGTKRYDSN 298 (440)
T ss_pred hhhhhhHHHHHHHhccchHH-------------HHHH---------------HHHHHhcCCceEEeehhhhhccccccCC
Confidence 99999999999999888766 5555 9999999999999999999999995543
Q ss_pred CC-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 306 GN-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 306 ~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+. .....|.+-.||+.+||+++++.|-||+|||+++.||||++||||.|.+.
T Consensus 299 SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKI 351 (440)
T KOG0726|consen 299 SGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKI 351 (440)
T ss_pred CccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCcccccc
Confidence 22 12234444489999999999999999999999999999999999999874
No 22
>KOG0652|consensus
Probab=99.95 E-value=8e-29 Score=221.47 Aligned_cols=159 Identities=26% Similarity=0.281 Sum_probs=135.4
Q ss_pred ccCCCchhhhhhhhhhh---hhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 151 LNWGTPVQECLEAGRIF---IQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 151 ~~~~d~v~~~~~~~~~~---~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
.+++.+++++.+.+... ....+.++..+++|+|+||| ||| ||.+ |+++ +...+..|
T Consensus 174 GGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGP--PGTGKTlm---ARAc---------------AaqT~aTF 233 (424)
T KOG0652|consen 174 GGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGP--PGTGKTLM---ARAC---------------AAQTNATF 233 (424)
T ss_pred ccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCC--CCCcHHHH---HHHH---------------HHhccchH
Confidence 34444667776665553 34567788899999999999 999 9999 9999 88999999
Q ss_pred ccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC
Q psy3629 227 TLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG 306 (358)
Q Consensus 227 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~ 306 (358)
+.+.+|.+...|+|.+... |+++ |..|++.+||||||||+|+|..+|..+..
T Consensus 234 LKLAgPQLVQMfIGdGAkL-------------VRDA---------------FaLAKEkaP~IIFIDElDAIGtKRfDSek 285 (424)
T KOG0652|consen 234 LKLAGPQLVQMFIGDGAKL-------------VRDA---------------FALAKEKAPTIIFIDELDAIGTKRFDSEK 285 (424)
T ss_pred HHhcchHHHhhhhcchHHH-------------HHHH---------------HHHhhccCCeEEEEechhhhccccccccc
Confidence 9999999999999999888 8888 99999999999999999999999965422
Q ss_pred C-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 307 N-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 307 ~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
. .....|.+-.||+.+||+.+..+|-||+||||.|.||||+||.||+|.+.
T Consensus 286 ~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKI 337 (424)
T KOG0652|consen 286 AGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKI 337 (424)
T ss_pred cccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccc
Confidence 1 11234445589999999999999999999999999999999999999873
No 23
>KOG0651|consensus
Probab=99.94 E-value=1.4e-27 Score=217.99 Aligned_cols=154 Identities=28% Similarity=0.296 Sum_probs=128.3
Q ss_pred chhhhhhhhhhhhh---hccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccC
Q psy3629 156 PVQECLEAGRIFIQ---QSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYS 231 (358)
Q Consensus 156 ~v~~~~~~~~~~~~---~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
+..++.+.....+. -....+..+|.++++||| ||+ ||.+ |+++ +...+..|+.+.+
T Consensus 140 qirelre~ielpl~np~lf~rvgIk~Pkg~ll~Gp--pGtGKTll---a~~V---------------aa~mg~nfl~v~s 199 (388)
T KOG0651|consen 140 QIRELREVIELPLTNPELFLRVGIKPPKGLLLYGP--PGTGKTLL---ARAV---------------AATMGVNFLKVVS 199 (388)
T ss_pred HHHHHHhheEeeccCchhccccCCCCCceeEEeCC--CCCchhHH---HHHH---------------HHhcCCceEEeeH
Confidence 34444554443321 134446788999999999 999 9999 9999 8889999999999
Q ss_pred cccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-cch
Q psy3629 232 PDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN-TGV 310 (358)
Q Consensus 232 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~-~~~ 310 (358)
+.+.++|+|++.+. +++. |+.|+...|||||+||||++.+.|...+.+ ++.
T Consensus 200 s~lv~kyiGEsaRl-------------IRem---------------f~yA~~~~pciifmdeiDAigGRr~se~Ts~dre 251 (388)
T KOG0651|consen 200 SALVDKYIGESARL-------------IRDM---------------FRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDRE 251 (388)
T ss_pred hhhhhhhcccHHHH-------------HHHH---------------HHHHhhhCceEEeehhhhhhccEEeccccchhHH
Confidence 99999999999888 7777 999999999999999999999999443322 233
Q ss_pred hhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 311 HDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 311 ~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
..|.+-.||++|||++...+|-+|+|||+|+.||||||||||+|.++
T Consensus 252 iqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~ 298 (388)
T KOG0651|consen 252 IQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKV 298 (388)
T ss_pred HHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCcccccee
Confidence 35566679999999999999999999999999999999999999875
No 24
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-26 Score=215.55 Aligned_cols=110 Identities=48% Similarity=0.760 Sum_probs=106.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||.+.++|-||+|||||+.||||++||||||++|+||+||.+.|.+||+.|.++| .+..++|++.||+.|+|+|
T Consensus 282 lDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM----~l~~dvd~e~la~~~~g~s 357 (406)
T COG1222 282 LDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM----NLADDVDLELLARLTEGFS 357 (406)
T ss_pred ccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc----cCccCcCHHHHHHhcCCCc
Confidence 799999999999999999999999999999999999999999999999999999999 5889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
||||+++|.+|.|.|+++ .+..++++||+.|.++
T Consensus 358 GAdlkaictEAGm~AiR~---------------~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 358 GADLKAICTEAGMFAIRE---------------RRDEVTMEDFLKAVEK 391 (406)
T ss_pred hHHHHHHHHHHhHHHHHh---------------ccCeecHHHHHHHHHH
Confidence 999999999999999998 5778999999999998
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.93 E-value=2.9e-27 Score=211.32 Aligned_cols=137 Identities=22% Similarity=0.313 Sum_probs=120.3
Q ss_pred hhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHH
Q psy3629 168 IQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQR 246 (358)
Q Consensus 168 ~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 246 (358)
+..-...+.|.++.+||||| ||| ||++ |+++ +++.+.+++.+.++.+++.++|.....
T Consensus 140 LenPe~Fg~WAPknVLFyGp--pGTGKTm~---Akal---------------ane~kvp~l~vkat~liGehVGdgar~- 198 (368)
T COG1223 140 LENPERFGDWAPKNVLFYGP--PGTGKTMM---AKAL---------------ANEAKVPLLLVKATELIGEHVGDGARR- 198 (368)
T ss_pred hhChHHhcccCcceeEEECC--CCccHHHH---HHHH---------------hcccCCceEEechHHHHHHHhhhHHHH-
Confidence 34445556788999999999 999 9999 9999 999999999999999999999988777
Q ss_pred HHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC
Q psy3629 247 KWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE 326 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~ 326 (358)
++++ |++|++.+|||+||||+|+|+-.|....= .|....++|.|||+|||+.
T Consensus 199 ------------Ihel---------------y~rA~~~aPcivFiDE~DAiaLdRryQel-RGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 199 ------------IHEL---------------YERARKAAPCIVFIDELDAIALDRRYQEL-RGDVSEIVNALLTELDGIK 250 (368)
T ss_pred ------------HHHH---------------HHHHHhcCCeEEEehhhhhhhhhhhHHHh-cccHHHHHHHHHHhccCcc
Confidence 6666 99999999999999999999988855322 2245678999999999999
Q ss_pred CCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 327 RLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 327 ~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
...+|..|||||+|+.||+|+.. ||+-
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRs--RFEe 277 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRS--RFEE 277 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHh--hhhh
Confidence 98999999999999999999987 8863
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=1.2e-26 Score=231.12 Aligned_cols=149 Identities=34% Similarity=0.486 Sum_probs=108.8
Q ss_pred hccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHH
Q psy3629 170 QSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKW 248 (358)
Q Consensus 170 ~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~ 248 (358)
.++..+..+++++||||| ||| ||++ |+++...+...... .......|+.+.++++.++
T Consensus 207 l~~~~gl~~p~GILLyGP--PGTGKT~L---AKAlA~eL~~~i~~-----~~~~~~~fl~v~~~eLl~k----------- 265 (512)
T TIGR03689 207 LYREYDLKPPKGVLLYGP--PGCGKTLI---AKAVANSLAQRIGA-----ETGDKSYFLNIKGPELLNK----------- 265 (512)
T ss_pred HHHhccCCCCcceEEECC--CCCcHHHH---HHHHHHhhcccccc-----ccCCceeEEeccchhhccc-----------
Confidence 345566778899999999 999 9999 88883322110000 0011122334444444444
Q ss_pred HhhhccccccccccccCCCCchhHHHHHHhhcCCCC----CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC
Q psy3629 249 AELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNS----GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG 324 (358)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~----~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~ 324 (358)
+.|++|+.++.+|+.|+.. .||||||||+|+++..|+...+ +....+++++||++|||
T Consensus 266 -----------------yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s-~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 266 -----------------YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS-SDVETTVVPQLLSELDG 327 (512)
T ss_pred -----------------ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc-chHHHHHHHHHHHHhcc
Confidence 4455555566669988764 7999999999999999865332 33567899999999999
Q ss_pred CCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 325 VERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 325 ~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+....+|+||+|||+|+.||||++||||||.+.
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKI 360 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEE
Confidence 998889999999999999999999999999863
No 27
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=4.2e-26 Score=246.64 Aligned_cols=154 Identities=16% Similarity=0.045 Sum_probs=114.7
Q ss_pred cccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccccccc----------cc
Q psy3629 172 KDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGF----------IG 240 (358)
Q Consensus 172 ~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g 240 (358)
...+..+++|+||+|| ||| ||.| |+++ |.+.+.||+.+.++++..++ +|
T Consensus 1623 lrLGl~pPKGILLiGP--PGTGKTlL---AKAL---------------A~es~VPFIsISgs~fl~~~~~~~~~d~i~ig 1682 (2281)
T CHL00206 1623 LRLALSPSRGILVIGS--IGTGRSYL---VKYL---------------ATNSYVPFITVFLNKFLDNKPKGFLIDDIDID 1682 (2281)
T ss_pred HHcCCCCCCceEEECC--CCCCHHHH---HHHH---------------HHhcCCceEEEEHHHHhhcccccccccccccc
Confidence 4455678999999999 999 9999 9999 99999999999999998665 24
Q ss_pred ccHHHHHHHhhhcccccccc----ccc---cCCCCchhHH--HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh
Q psy3629 241 FSLLQRKWAELSLHQDIDVK----PFF---FNPKNTSEFL--CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH 311 (358)
Q Consensus 241 ~s~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~e~~--~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~ 311 (358)
+++.--. ...+ .-++. +.| ....+.+|.+ |+.+|+.||+.+||||||||||+++... ..
T Consensus 1683 es~~~~~---~~~~-~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~ 1750 (2281)
T CHL00206 1683 DSDDIDD---SDDI-DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SN 1750 (2281)
T ss_pred ccccccc---cccc-ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------cc
Confidence 3321000 0000 00000 111 0013445555 8999999999999999999999997651 11
Q ss_pred hHHHHHHHHccCCCC---CCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 312 DTVVNQLLSKMDGVE---RLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 312 ~~~~~~lL~~ld~~~---~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
...+++||++|||.. ...+|+||||||+||.||||++||||||.++
T Consensus 1751 ~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I 1799 (2281)
T CHL00206 1751 YLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCI 1799 (2281)
T ss_pred eehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEE
Confidence 224899999999874 3457999999999999999999999999864
No 28
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.91 E-value=2.1e-25 Score=217.87 Aligned_cols=163 Identities=26% Similarity=0.319 Sum_probs=126.7
Q ss_pred hcCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhccccccccccccc
Q psy3629 147 SRGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEV 216 (358)
Q Consensus 147 ~~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~ 216 (358)
..|.++|.+ ..+++.+.....+ ..++..+..+++++||+|| ||| ||.+ |+++
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~Gp--pGTGKT~L---Akal------------- 199 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGP--PGTGKTML---AKAV------------- 199 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECC--CCCCHHHH---HHHH-------------
Confidence 356677776 2233333333222 3355666778999999999 999 9999 9999
Q ss_pred ccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 217 TTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
+...+.+|+.+.++++..+|+|.++.. ++++ |..|+..+||||||||||+
T Consensus 200 --A~~l~~~fi~i~~s~l~~k~~ge~~~~-------------lr~l---------------f~~A~~~~P~ILfIDEID~ 249 (398)
T PTZ00454 200 --AHHTTATFIRVVGSEFVQKYLGEGPRM-------------VRDV---------------FRLARENAPSIIFIDEVDS 249 (398)
T ss_pred --HHhcCCCEEEEehHHHHHHhcchhHHH-------------HHHH---------------HHHHHhcCCeEEEEECHhh
Confidence 788888888887776666666665554 4444 9999999999999999999
Q ss_pred hhhhcCCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 297 ICKARGTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 297 ~~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
++..|..... .+....+++.+||++|||+....+|+||+|||+|+.||||++||||||.++
T Consensus 250 i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I 311 (398)
T PTZ00454 250 IATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKI 311 (398)
T ss_pred hccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEE
Confidence 9998854322 222456889999999999988889999999999999999999999999763
No 29
>KOG0730|consensus
Probab=99.91 E-value=2.4e-24 Score=213.71 Aligned_cols=118 Identities=43% Similarity=0.681 Sum_probs=110.9
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||++...+|+||||||||+.||+|++||||||+.|+||+||.+.|.+||+.+++++ ++.+++|++.||+.|+|||
T Consensus 562 mDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm----p~~~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 562 MDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM----PFSEDVDLEELAQATEGYS 637 (693)
T ss_pred cccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC----CCCccccHHHHHHHhccCC
Confidence 899999999999999999999999999999999999999999999999999999999 5788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
||||.++|++|++.|+++.++ ...++.+||++|++. .+++..
T Consensus 638 GAel~~lCq~A~~~a~~e~i~-------------a~~i~~~hf~~al~~-~r~s~~ 679 (693)
T KOG0730|consen 638 GAEIVAVCQEAALLALRESIE-------------ATEITWQHFEEALKA-VRPSLT 679 (693)
T ss_pred hHHHHHHHHHHHHHHHHHhcc-------------cccccHHHHHHHHHh-hcccCC
Confidence 999999999999999998664 346899999999999 888863
No 30
>KOG0732|consensus
Probab=99.90 E-value=1.3e-24 Score=226.60 Aligned_cols=142 Identities=29% Similarity=0.434 Sum_probs=116.8
Q ss_pred hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHH
Q psy3629 169 QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRK 247 (358)
Q Consensus 169 ~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 247 (358)
+.+..+...+++|+||+|| ||| ||.. |+++...+- .......|+.-.+++.+++|+|+.+..
T Consensus 289 E~f~~~~itpPrgvL~~Gp--pGTGkTl~---araLa~~~s----------~~~~kisffmrkgaD~lskwvgEaERq-- 351 (1080)
T KOG0732|consen 289 EFFDNFNITPPRGVLFHGP--PGTGKTLM---ARALAAACS----------RGNRKISFFMRKGADCLSKWVGEAERQ-- 351 (1080)
T ss_pred hHhhhcccCCCcceeecCC--CCCchhHH---HHhhhhhhc----------ccccccchhhhcCchhhccccCcHHHH--
Confidence 4455566889999999999 999 9998 888743321 222445566667777777777666666
Q ss_pred HHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC
Q psy3629 248 WAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER 327 (358)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~ 327 (358)
++-+ |+.|++.+|+||||||||.+++.|+.- ..+....++++||.-|||+.+
T Consensus 352 -----------lrll---------------FeeA~k~qPSIIffdeIdGlapvrSsk--qEqih~SIvSTLLaLmdGlds 403 (1080)
T KOG0732|consen 352 -----------LRLL---------------FEEAQKTQPSIIFFDEIDGLAPVRSSK--QEQIHASIVSTLLALMDGLDS 403 (1080)
T ss_pred -----------HHHH---------------HHHHhccCceEEeccccccccccccch--HHHhhhhHHHHHHHhccCCCC
Confidence 5555 999999999999999999999999653 344778899999999999999
Q ss_pred CCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 328 LNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 328 ~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
+++|+||||||||+.+|||+.||||||.
T Consensus 404 RgqVvvigATnRpda~dpaLRRPgrfdr 431 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDAIDPALRRPGRFDR 431 (1080)
T ss_pred CCceEEEcccCCccccchhhcCCcccce
Confidence 9999999999999999999999999996
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.90 E-value=1e-24 Score=213.59 Aligned_cols=138 Identities=30% Similarity=0.404 Sum_probs=115.0
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
++..+..+++++||+|| ||| ||.+ |+++ +...+.+|+.+.++++.++|+|.++.
T Consensus 157 ~~~~g~~~p~gvLL~Gp--pGtGKT~l---Akai---------------a~~~~~~~i~v~~~~l~~~~~g~~~~----- 211 (389)
T PRK03992 157 FEEVGIEPPKGVLLYGP--PGTGKTLL---AKAV---------------AHETNATFIRVVGSELVQKFIGEGAR----- 211 (389)
T ss_pred HHhcCCCCCCceEEECC--CCCChHHH---HHHH---------------HHHhCCCEEEeehHHHhHhhccchHH-----
Confidence 45666778999999999 999 9999 9999 77777788888777666666655544
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-cchhhHHHHHHHHccCCCCCC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN-TGVHDTVVNQLLSKMDGVERL 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~ 328 (358)
.++++|+.|+..+||||||||||.+++.|+..+.+ +....+.+.+||++|||+...
T Consensus 212 -----------------------~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 212 -----------------------LVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -----------------------HHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 44555999999999999999999999998654332 224467888999999999888
Q ss_pred CCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 329 NNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 329 ~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++|.||+|||+++.||+|++||||||..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~ 296 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRI 296 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceE
Confidence 8999999999999999999999999975
No 32
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.89 E-value=2e-24 Score=217.98 Aligned_cols=138 Identities=33% Similarity=0.458 Sum_probs=115.6
Q ss_pred cccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHh
Q psy3629 172 KDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAE 250 (358)
Q Consensus 172 ~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 250 (358)
+..+...++++||+|| ||| ||.+ |+++ +.+.+.+++.+.++++...++|.++..
T Consensus 81 ~~~g~~~~~giLL~Gp--pGtGKT~l---a~al---------------A~~~~~~~~~i~~~~~~~~~~g~~~~~----- 135 (495)
T TIGR01241 81 TKLGAKIPKGVLLVGP--PGTGKTLL---AKAV---------------AGEAGVPFFSISGSDFVEMFVGVGASR----- 135 (495)
T ss_pred HhcCCCCCCcEEEECC--CCCCHHHH---HHHH---------------HHHcCCCeeeccHHHHHHHHhcccHHH-----
Confidence 3344567889999999 999 9999 9999 888888888888777766666665555
Q ss_pred hhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCC
Q psy3629 251 LSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLN 329 (358)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~ 329 (358)
++.+ |+.|+..+||||||||||+++..|... ++.+....+++|+||++|||+.+..
T Consensus 136 --------l~~~---------------f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 136 --------VRDL---------------FEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred --------HHHH---------------HHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 4555 999999999999999999999998653 2223345789999999999998888
Q ss_pred CEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 330 NILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 330 ~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+|+||+|||+|+.||+|++||||||.++
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i 220 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQV 220 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEE
Confidence 9999999999999999999999999753
No 33
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=9.4e-24 Score=207.77 Aligned_cols=139 Identities=25% Similarity=0.328 Sum_probs=115.1
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
++..+..++.++||+|| ||| ||.+ |+++ +...+.+|+.+.++++.++|+|.++..
T Consensus 209 ~~~~gi~~p~gVLL~GP--PGTGKT~L---AraI---------------A~el~~~fi~V~~seL~~k~~Ge~~~~---- 264 (438)
T PTZ00361 209 YDDIGIKPPKGVILYGP--PGTGKTLL---AKAV---------------ANETSATFLRVVGSELIQKYLGDGPKL---- 264 (438)
T ss_pred HHhcCCCCCcEEEEECC--CCCCHHHH---HHHH---------------HHhhCCCEEEEecchhhhhhcchHHHH----
Confidence 45566778899999999 999 9999 9999 777777888887777766666665554
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-cchhhHHHHHHHHccCCCCCC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN-TGVHDTVVNQLLSKMDGVERL 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~ 328 (358)
++.+ |+.|+..+||||||||||+++..|....++ .....+.+.+||++|||+...
T Consensus 265 ---------vr~l---------------F~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 265 ---------VREL---------------FRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---------HHHH---------------HHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 4444 999999999999999999999988643222 223467788999999999887
Q ss_pred CCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 329 NNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 329 ~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
.+|.||+|||+++.||+|++||||||.+.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I 349 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKI 349 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEE
Confidence 89999999999999999999999999753
No 34
>KOG0738|consensus
Probab=99.88 E-value=1.5e-22 Score=189.99 Aligned_cols=128 Identities=35% Similarity=0.536 Sum_probs=110.9
Q ss_pred CCCccCCC-C---eEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc
Q psy3629 1 MDGVERLN-N---ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT 76 (358)
Q Consensus 1 lDg~~~~~-~---V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t 76 (358)
|||++... + |+|+||||.||+||+|++| ||+++|+||+|+.+.|..+++..++.. ...++.+++.||+.+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~----~~~~~~~~~~lae~~ 413 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSV----ELDDPVNLEDLAERS 413 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccc----cCCCCccHHHHHHHh
Confidence 78886533 3 9999999999999999999 999999999999999999999999886 577889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCccccC---hhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 77 KNFSGAELEGLVRAAQSCAMNRLIKATNKVEVD---PQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 77 ~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~---~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
+||||+||.++|++|.|++++|.+......++- .+... .+++..||..|+++ ++|+.+
T Consensus 414 eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~-v~pSvs 474 (491)
T KOG0738|consen 414 EGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRK-VRPSVS 474 (491)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHH-cCcCCC
Confidence 999999999999999999999988765433321 12222 56999999999999 999975
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.87 E-value=4.6e-23 Score=211.67 Aligned_cols=139 Identities=30% Similarity=0.449 Sum_probs=115.7
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
++..+...++++||+|| ||| ||.+ |+++ +.+.+.+++.+.++++...++|.+...
T Consensus 208 ~~~~g~~~p~gVLL~GP--pGTGKT~L---Aral---------------A~e~~~p~i~is~s~f~~~~~g~~~~~---- 263 (638)
T CHL00176 208 FTAVGAKIPKGVLLVGP--PGTGKTLL---AKAI---------------AGEAEVPFFSISGSEFVEMFVGVGAAR---- 263 (638)
T ss_pred HhhccCCCCceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCeeeccHHHHHHHhhhhhHHH----
Confidence 34445566889999999 999 9999 9999 888888999888777766666655444
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERL 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~ 328 (358)
++.+ |+.|+..+||||||||||.++..|+.. ++.+.....++++||++|||+...
T Consensus 264 ---------vr~l---------------F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 264 ---------VRDL---------------FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred ---------HHHH---------------HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 4445 999999999999999999999888643 223334568999999999999888
Q ss_pred CCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 329 NNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 329 ~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
.+|+||+|||+|+.||+|++||||||.++
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I 348 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQI 348 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEE
Confidence 89999999999999999999999999753
No 36
>KOG0737|consensus
Probab=99.87 E-value=4.1e-23 Score=193.39 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=110.4
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
++++|+||+|| ||| ||++ |+++ +.+.+..|+.+..+.+.++|.|+++..
T Consensus 125 ~p~kGiLL~GP--pG~GKTml---AKA~---------------Akeaga~fInv~~s~lt~KWfgE~eKl---------- 174 (386)
T KOG0737|consen 125 RPPKGILLYGP--PGTGKTML---AKAI---------------AKEAGANFINVSVSNLTSKWFGEAQKL---------- 174 (386)
T ss_pred cCCccceecCC--CCchHHHH---HHHH---------------HHHcCCCcceeeccccchhhHHHHHHH----------
Confidence 46899999999 999 9999 9999 999999999999888887777766655
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCC--CEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLN--NILV 333 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~--~v~v 333 (358)
++-+ |-.|.+.+||||||||+|++.+.|. .+.+.....+.+||....||+.... +|+|
T Consensus 175 ---v~Av---------------FslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlV 234 (386)
T KOG0737|consen 175 ---VKAV---------------FSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLV 234 (386)
T ss_pred ---HHHH---------------HhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEE
Confidence 4444 9999999999999999999999993 3344578899999999999997655 4999
Q ss_pred EEecCCccccchhcCCCCCCc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd 354 (358)
+||||||..||.|++| ||-
T Consensus 235 lgATNRP~DlDeAiiR--R~p 253 (386)
T KOG0737|consen 235 LGATNRPFDLDEAIIR--RLP 253 (386)
T ss_pred EeCCCCCccHHHHHHH--hCc
Confidence 9999999999999999 763
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.86 E-value=8.7e-23 Score=211.32 Aligned_cols=133 Identities=34% Similarity=0.485 Sum_probs=113.8
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
..+.+++++|| ||| ||.+ ++++ +.+.+.+|+.+.++++...++|.+...
T Consensus 183 ~~~~gill~G~--~G~GKt~~---~~~~---------------a~~~~~~f~~is~~~~~~~~~g~~~~~---------- 232 (644)
T PRK10733 183 KIPKGVLMVGP--PGTGKTLL---AKAI---------------AGEAKVPFFTISGSDFVEMFVGVGASR---------- 232 (644)
T ss_pred CCCCcEEEECC--CCCCHHHH---HHHH---------------HHHcCCCEEEEehHHhHHhhhcccHHH----------
Confidence 44678999999 999 9999 9999 888888999888877766666666555
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
++++ |..|+..+||||||||||+++..|+.. ++.+....+++|+||++|||+....+|+||
T Consensus 233 ---~~~~---------------f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 233 ---VRDM---------------FEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred ---HHHH---------------HHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 5555 999999999999999999999998653 233335568999999999999988899999
Q ss_pred EecCCccccchhcCCCCCCcccc
Q psy3629 335 GMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+|||+|+.||+|++||||||.++
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i 317 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQV 317 (644)
T ss_pred EecCChhhcCHHHhCCcccceEE
Confidence 99999999999999999999764
No 38
>KOG0732|consensus
Probab=99.86 E-value=7.7e-22 Score=205.99 Aligned_cols=265 Identities=23% Similarity=0.257 Sum_probs=170.6
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+.+++.|+||||||||+.+|||++||||||+.++|++|+.++|..|+..+..++. +.....-+..+|+.|.||-
T Consensus 398 mdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~---~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 398 MDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE---PPISRELLLWLAEETSGYG 474 (1080)
T ss_pred ccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC---CCCCHHHHHHHHHhccccc
Confidence 8999999999999999999999999999999999999999999999999999998875 3445667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc-ccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCchhh
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKV-EVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTPVQE 159 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~-~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~v~~ 159 (358)
|+||+.+|.+|++.++++-....-.. ..-........|...||..|+.+ +.|+..++..... ...++.+.-
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~-i~ps~~R~~~~~s-------~Pl~~~~~~ 546 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSR-ITPSSRRSSVIFS-------RPLSTYLKP 546 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhc-cCCCCCccccCCC-------CCCCcceec
Confidence 99999999999999998754332110 00001122344899999999999 7777544321111 111111111
Q ss_pred hh--hhhhhhhhhccccccccceeeeeeccCCCCc--hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc-
Q psy3629 160 CL--EAGRIFIQQSKDTESSGLVSVLLEVDKVPTD--ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV- 234 (358)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~--kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (358)
++ ......++.+.. +-.+.. ++. ...+ ++..+..+ . ..-...+.+.+.+...
T Consensus 547 ll~~~~~~~~iq~~~~--------va~~~~--k~~e~~~~~---v~~~e~~~----~------i~lic~~~lli~~~~~~ 603 (1080)
T KOG0732|consen 547 LLPFQDALEDIQGLMD--------VASSMA--KIEEHLKLL---VRSFESNF----A------IRLICRPRLLINGGKGS 603 (1080)
T ss_pred ccchHHHHHHhhcchh--------HHhhhh--hHHHHhHHH---HHhhhccc----c------hhhhcCcHHhcCCCccc
Confidence 11 111111111111 111111 111 0111 22221000 0 0001111122222221
Q ss_pred ccccccccHHHHHHHhhhccccccccccccCC-CCchhHHHHHHhhcCCCCCceEEEEccchhhhhhc
Q psy3629 235 KRGFIGFSLLQRKWAELSLHQDIDVKPFFFNP-KNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKAR 301 (358)
Q Consensus 235 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r 301 (358)
+..|.|... .+.+....++.+++..+.+-. -+++|..|.++|..||...||||||.++|.|+...
T Consensus 604 g~~~lg~aI--lh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 604 GQDYLGPAI--LHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred ccCcccHHH--HHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 112222222 345566777778888887777 78999999999999999999999999999998774
No 39
>KOG0740|consensus
Probab=99.85 E-value=2.3e-22 Score=194.24 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=110.6
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+++++||.|| ||+ ||+| ++++ |.+.+..|+.+.++.+.++|+|+++..
T Consensus 184 ~p~rglLLfGP--pgtGKtmL---~~ai---------------AsE~~atff~iSassLtsK~~Ge~eK~---------- 233 (428)
T KOG0740|consen 184 EPVRGLLLFGP--PGTGKTML---AKAI---------------ATESGATFFNISASSLTSKYVGESEKL---------- 233 (428)
T ss_pred cccchhheecC--CCCchHHH---HHHH---------------HhhhcceEeeccHHHhhhhccChHHHH----------
Confidence 56789999999 999 9999 9999 999999999999888877777776555
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC--CCCCEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE--RLNNILV 333 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~~~~v~v 333 (358)
|+-||+.||..+|+||||||||+++..|.+. .+..+.|+..++|..++|.. ..++|+|
T Consensus 234 ------------------vralf~vAr~~qPsvifidEidslls~Rs~~--e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 234 ------------------VRALFKVARSLQPSVIFIDEIDSLLSKRSDN--EHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred ------------------HHHHHHHHHhcCCeEEEechhHHHHhhcCCc--ccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 4445999999999999999999999999544 33477899999999999974 3458999
Q ss_pred EEecCCccccchhcCCCCCCcc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~ 355 (358)
|||||+||.||.|++| ||=.
T Consensus 294 igaTN~P~e~Dea~~R--rf~k 313 (428)
T KOG0740|consen 294 IGATNRPWELDEAARR--RFVK 313 (428)
T ss_pred EecCCCchHHHHHHHH--Hhhc
Confidence 9999999999999999 9853
No 40
>KOG0734|consensus
Probab=99.84 E-value=3.7e-21 Score=186.56 Aligned_cols=110 Identities=36% Similarity=0.529 Sum_probs=101.4
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||.++.+|+||||||+|+.||+|+.||||||.+|.+|.||...|.+||+.|+.+. ....++|++.||+-|.|||
T Consensus 431 mDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki----~~~~~VD~~iiARGT~GFs 506 (752)
T KOG0734|consen 431 MDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI----PLDEDVDPKIIARGTPGFS 506 (752)
T ss_pred hcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC----CcccCCCHhHhccCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999987 4778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
||||++++.+|+.+|... +...+++.+++.|-.+
T Consensus 507 GAdLaNlVNqAAlkAa~d---------------ga~~VtM~~LE~akDr 540 (752)
T KOG0734|consen 507 GADLANLVNQAALKAAVD---------------GAEMVTMKHLEFAKDR 540 (752)
T ss_pred hHHHHHHHHHHHHHHHhc---------------CcccccHHHHhhhhhh
Confidence 999999999998887654 4556888888887765
No 41
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.83 E-value=4e-21 Score=187.01 Aligned_cols=138 Identities=32% Similarity=0.412 Sum_probs=111.0
Q ss_pred ccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHH
Q psy3629 171 SKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWA 249 (358)
Q Consensus 171 ~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~ 249 (358)
++..+..++.++||+|| ||| ||.+ |+++ +...+.+|+.+.++++...|+|.+.
T Consensus 148 ~~~~g~~~p~gvLL~Gp--pGtGKT~l---akai---------------a~~l~~~~~~v~~~~l~~~~~g~~~------ 201 (364)
T TIGR01242 148 FEEVGIEPPKGVLLYGP--PGTGKTLL---AKAV---------------AHETNATFIRVVGSELVRKYIGEGA------ 201 (364)
T ss_pred HHhcCCCCCceEEEECC--CCCCHHHH---HHHH---------------HHhCCCCEEecchHHHHHHhhhHHH------
Confidence 44556677899999999 999 9999 9999 7777777777766555555555444
Q ss_pred hhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-cchhhHHHHHHHHccCCCCCC
Q psy3629 250 ELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN-TGVHDTVVNQLLSKMDGVERL 328 (358)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~ 328 (358)
..++++|+.|+..+||||||||+|.++..|.....+ .....+.+.++|.++|++...
T Consensus 202 ----------------------~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 202 ----------------------RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred ----------------------HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 444555999999999999999999999887544322 223467788999999999877
Q ss_pred CCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 329 NNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 329 ~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
.+|.||+|||+++.||++++||||||..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~ 287 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRI 287 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceE
Confidence 7899999999999999999999999964
No 42
>KOG0736|consensus
Probab=99.82 E-value=7.6e-20 Score=183.90 Aligned_cols=139 Identities=31% Similarity=0.545 Sum_probs=118.5
Q ss_pred CCCcc--CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCC-CHHHHHHHHHHHHhccccccccCchhhHHHHHHhcC
Q psy3629 1 MDGVE--RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLP-NEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTK 77 (358)
Q Consensus 1 lDg~~--~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P-~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~ 77 (358)
|||+. +...|+|||||||||.||||++||||||+-++++++ |.+.+..+|+.+.+++ .+.+++++.++|++|+
T Consensus 801 LDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkF----kLdedVdL~eiAk~cp 876 (953)
T KOG0736|consen 801 LDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKF----KLDEDVDLVEIAKKCP 876 (953)
T ss_pred hhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHc----cCCCCcCHHHHHhhCC
Confidence 68998 456899999999999999999999999999999998 5788999999999998 5889999999999995
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhh--hhhhccCHHHHHHhhhcCccCCCCCChhhhHHHh
Q psy3629 78 -NFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQA--LEKLCITRADFLHALETDIKPAFGSSDESLEHFL 146 (358)
Q Consensus 78 -g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~--~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~ 146 (358)
.|||||+.++|.+|.+.|++|.+.......++... .....|+++||.+++++ +.|+. +..++..|.
T Consensus 877 ~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~-l~PSv--S~~EL~~ye 945 (953)
T KOG0736|consen 877 PNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKR-LQPSV--SEQELLRYE 945 (953)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHh-cCCcc--cHHHHHHHH
Confidence 79999999999999999999988876654333322 24577899999999999 99996 334555543
No 43
>KOG0652|consensus
Probab=99.82 E-value=1.8e-20 Score=168.00 Aligned_cols=110 Identities=41% Similarity=0.654 Sum_probs=105.0
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
+|||.++.+|-||+||||.+.||||++|+||+|++|+||.|+.+.|.+|++.|-+++ ...+++++++||..|++|.
T Consensus 302 LDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKM----nv~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKM----NVSDDVNFEELARSTDDFN 377 (424)
T ss_pred hcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhc----CCCCCCCHHHHhhcccccC
Confidence 699999999999999999999999999999999999999999999999999999998 5889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|++++++|.+|.|.|+++ +...++.+||++++..
T Consensus 378 GAQcKAVcVEAGMiALRr---------------~atev~heDfmegI~e 411 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMIALRR---------------GATEVTHEDFMEGILE 411 (424)
T ss_pred chhheeeehhhhHHHHhc---------------ccccccHHHHHHHHHH
Confidence 999999999999999998 5667999999999865
No 44
>KOG0728|consensus
Probab=99.81 E-value=6.3e-20 Score=163.71 Aligned_cols=113 Identities=40% Similarity=0.652 Sum_probs=105.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
+|||+..+++-||.||||.+.||||++||||.|++|+||+|+.++|.+||+.|-+++ .+....+++.+|+...|.|
T Consensus 278 ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm----nl~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM----NLTRGINLRKIAEKMPGAS 353 (404)
T ss_pred ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh----chhcccCHHHHHHhCCCCc
Confidence 699999999999999999999999999999999999999999999999999999998 4677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCcc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIK 132 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~k 132 (358)
|++++.+|.+|.+.|+++ .+.-+|++||+-|+.+-++
T Consensus 354 gaevk~vcteagm~alre---------------rrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRE---------------RRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred cchhhhhhhhhhHHHHHH---------------hhccccHHHHHHHHHHHHh
Confidence 999999999999999987 4567999999999987333
No 45
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=2.3e-19 Score=189.15 Aligned_cols=131 Identities=40% Similarity=0.704 Sum_probs=112.1
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+|+||+|||+|+.||+|++||||||+.|+|++|+.++|.+||+.++++. ....+.+++.||+.|+|||
T Consensus 582 ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~----~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 582 MDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM----PLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred hhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC----CCCccCCHHHHHHHcCCCC
Confidence 688888889999999999999999999999999999999999999999999998876 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccC---hhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVD---PQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~---~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
|+||+++|++|++.++++.+......... ........++.+||.+|+++ ++|+..
T Consensus 658 gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~-~~ps~~ 715 (733)
T TIGR01243 658 GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKK-VKPSVS 715 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHH-cCCCCC
Confidence 99999999999999999876543211110 11123457999999999999 999963
No 46
>KOG0737|consensus
Probab=99.80 E-value=2.5e-19 Score=168.00 Aligned_cols=126 Identities=32% Similarity=0.519 Sum_probs=108.7
Q ss_pred CCCccCCCC--eEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 1 MDGVERLNN--ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 1 lDg~~~~~~--V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
|||+.++++ |+|+||||||.+||.|++| |+.++++|++|+..+|++||+.+++.- .+.+++|+.++|..|+|
T Consensus 221 WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e----~~e~~vD~~~iA~~t~G 294 (386)
T KOG0737|consen 221 WDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKE----KLEDDVDLDEIAQMTEG 294 (386)
T ss_pred hccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhccc----ccCcccCHHHHHHhcCC
Confidence 799988776 9999999999999999999 999999999999999999999999886 57789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCccccC--------------hhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 79 FSGAELEGLVRAAQSCAMNRLIKATNKVEVD--------------PQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 79 ~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~--------------~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
|||+||+++|+.|++..+++++... ....+ ......++++++||..+..+ +-++
T Consensus 295 ySGSDLkelC~~Aa~~~ire~~~~~-~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~-v~~~ 362 (386)
T KOG0737|consen 295 YSGSDLKELCRLAALRPIRELLVSE-TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINR-VSAS 362 (386)
T ss_pred CcHHHHHHHHHHHhHhHHHHHHHhc-ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHh-hhhH
Confidence 9999999999999999999999875 11100 01122578899999999986 4444
No 47
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=2.6e-20 Score=154.09 Aligned_cols=124 Identities=27% Similarity=0.387 Sum_probs=103.8
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccccc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVK 260 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~ 260 (358)
+|++|| ||+ ||.+ ++.+ +...+.+++.+.++.+.+.+.+.++.. +.
T Consensus 1 ill~G~--~G~GKT~l---~~~l---------------a~~l~~~~~~i~~~~~~~~~~~~~~~~-------------i~ 47 (132)
T PF00004_consen 1 ILLHGP--PGTGKTTL---ARAL---------------AQYLGFPFIEIDGSELISSYAGDSEQK-------------IR 47 (132)
T ss_dssp EEEESS--TTSSHHHH---HHHH---------------HHHTTSEEEEEETTHHHTSSTTHHHHH-------------HH
T ss_pred CEEECc--CCCCeeHH---HHHH---------------Hhhcccccccccccccccccccccccc-------------cc
Confidence 589999 999 9999 9999 666778888888888766666665555 44
Q ss_pred ccccCCCCchhHHHHHHhhcCCCCC-ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCC-CCEEEEEecC
Q psy3629 261 PFFFNPKNTSEFLCTIILEAGPNSG-LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERL-NNILVIGMTN 338 (358)
Q Consensus 261 ~~~~~~~~~~e~~~~~~f~~a~~~~-p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~-~~v~vi~aTn 338 (358)
.+ |+.|+..+ ||||||||+|.+++.. ....+....+++++|+..|+..... .+++||+|||
T Consensus 48 ~~---------------~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn 110 (132)
T PF00004_consen 48 DF---------------FKKAKKSAKPCVLFIDEIDKLFPKS--QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTN 110 (132)
T ss_dssp HH---------------HHHHHHTSTSEEEEEETGGGTSHHC--STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEES
T ss_pred cc---------------cccccccccceeeeeccchhccccc--ccccccccccccceeeecccccccccccceeEEeeC
Confidence 55 99998887 9999999999999997 2234446788999999999998765 5699999999
Q ss_pred CccccchhcCCCCCCccc
Q psy3629 339 RRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 339 ~~~~iD~a~lr~GRfd~~ 356 (358)
+++.||++++| ||||..
T Consensus 111 ~~~~i~~~l~~-~rf~~~ 127 (132)
T PF00004_consen 111 SPDKIDPALLR-SRFDRR 127 (132)
T ss_dssp SGGGSCHHHHS-TTSEEE
T ss_pred ChhhCCHhHHh-CCCcEE
Confidence 99999999999 999975
No 48
>KOG0743|consensus
Probab=99.79 E-value=1.2e-19 Score=174.47 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=104.4
Q ss_pred hhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 159 ECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 159 ~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
+++++...+. +.++..+....+|+||||| ||| ||++ .+|+ |...++..+.+.-+..
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGP--PGTGKSS~---IaAm---------------An~L~ydIydLeLt~v 271 (457)
T KOG0743|consen 212 RIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGP--PGTGKSSF---IAAM---------------ANYLNYDIYDLELTEV 271 (457)
T ss_pred HHHHHHHHHHhcchHHHhcCcchhccceeeCC--CCCCHHHH---HHHH---------------HhhcCCceEEeeeccc
Confidence 4555555544 3456666677899999999 999 9999 9999 8888887776653222
Q ss_pred ccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC----c-c
Q psy3629 235 KRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN----T-G 309 (358)
Q Consensus 235 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~----~-~ 309 (358)
- .++| ++.+...+... +||+|.+||.-+..|+..... . .
T Consensus 272 ----~----------------------------~n~d--Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~ 315 (457)
T KOG0743|consen 272 ----K----------------------------LDSD--LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGD 315 (457)
T ss_pred ----c----------------------------CcHH--HHHHHHhCCCC--cEEEEeecccccccccccccccccccCC
Confidence 1 1222 23335544443 699999999998766433221 1 1
Q ss_pred hhhHHHHHHHHccCCCCCCC--CEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 310 VHDTVVNQLLSKMDGVERLN--NILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 310 ~~~~~~~~lL~~ld~~~~~~--~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
.+...+|.||+.+||+.+.. .-|||.|||+++.||||||||||+|+|.
T Consensus 316 ~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 316 LSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred cceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 23467999999999997655 6899999999999999999999999985
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.79 E-value=4.8e-19 Score=173.25 Aligned_cols=110 Identities=35% Similarity=0.585 Sum_probs=102.2
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+|+||+|||+|+.||||++||||||++|+|++|+.++|..||+.++.++ .+..+.++..+|+.|+|||
T Consensus 276 ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~----~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM----NLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred hhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC----CCCcccCHHHHHHHcCCCC
Confidence 578888889999999999999999999999999999999999999999999999886 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||+++|++|.+.|+++ +...++.+||.+|+++
T Consensus 352 gaDI~~l~~eA~~~A~r~---------------~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 352 AADIAAICQEAGMQAVRK---------------NRYVILPKDFEKGYKT 385 (398)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHHH
Confidence 999999999999999877 3457999999999988
No 50
>KOG0731|consensus
Probab=99.78 E-value=4.7e-19 Score=180.94 Aligned_cols=111 Identities=41% Similarity=0.633 Sum_probs=102.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||.++.+|+|+++||+|+.||+|++||||||++|++++|+...|.+|++.|++.... ..++.++..+|..|+|||
T Consensus 442 mDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~~a~~t~gf~ 518 (774)
T KOG0731|consen 442 MDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSKLASLTPGFS 518 (774)
T ss_pred hcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHHHHhcCCCCc
Confidence 79999999999999999999999999999999999999999999999999999988741 147889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||.++|.+|+..+.++ ....++..||+.|+++
T Consensus 519 gadl~n~~neaa~~a~r~---------------~~~~i~~~~~~~a~~R 552 (774)
T KOG0731|consen 519 GADLANLCNEAALLAARK---------------GLREIGTKDLEYAIER 552 (774)
T ss_pred HHHHHhhhhHHHHHHHHh---------------ccCccchhhHHHHHHH
Confidence 999999999999999887 4567899999999985
No 51
>KOG0727|consensus
Probab=99.77 E-value=1e-18 Score=156.24 Aligned_cols=115 Identities=36% Similarity=0.596 Sum_probs=108.6
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||.+..+|-||.|||+.+.||||++||||+|++|+||+||..+++-+|.....+| .+.+++|++.+..+-+..|
T Consensus 286 mdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm----~ls~~vdle~~v~rpdkis 361 (408)
T KOG0727|consen 286 MDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM----NLSDEVDLEDLVARPDKIS 361 (408)
T ss_pred ccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcc----cCCcccCHHHHhcCccccc
Confidence 899999999999999999999999999999999999999999999999999999998 5889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
|+||.++|++|.+.|+++ ++..+.+.||+++....+++.
T Consensus 362 ~adi~aicqeagm~avr~---------------nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 362 GADINAICQEAGMLAVRE---------------NRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred hhhHHHHHHHHhHHHHHh---------------cceeeeHHHHHHHHHhhcCCc
Confidence 999999999999999987 577899999999998866655
No 52
>KOG0726|consensus
Probab=99.77 E-value=3.1e-19 Score=162.31 Aligned_cols=110 Identities=38% Similarity=0.650 Sum_probs=104.9
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
+|||++++.|-||.|||+.+.||||++||||+|++|+|++||...+..||++|..+| .+..+++++.+...-+.+|
T Consensus 316 ldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M----tl~~dVnle~li~~kddlS 391 (440)
T KOG0726|consen 316 LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM----TLAEDVNLEELIMTKDDLS 391 (440)
T ss_pred ccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeeccc----chhccccHHHHhhcccccc
Confidence 699999999999999999999999999999999999999999999999999999998 5888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
||||+++|.+|.+.|+++ .+..++.+||..|.++
T Consensus 392 GAdIkAictEaGllAlRe---------------rRm~vt~~DF~ka~e~ 425 (440)
T KOG0726|consen 392 GADIKAICTEAGLLALRE---------------RRMKVTMEDFKKAKEK 425 (440)
T ss_pred cccHHHHHHHHhHHHHHH---------------HHhhccHHHHHHHHHH
Confidence 999999999999999987 5678999999999987
No 53
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.77 E-value=3.7e-18 Score=170.61 Aligned_cols=120 Identities=30% Similarity=0.449 Sum_probs=103.2
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..+|+||||||+|+.||+|++|+||||..|+|++|+.++|.+||+.++++... ....+.+++.||+.|+||||+||++
T Consensus 358 ~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~--~~~~~~dl~~La~~T~GfSGAdI~~ 435 (489)
T CHL00195 358 KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP--KSWKKYDIKKLSKLSNKFSGAEIEQ 435 (489)
T ss_pred CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC--CcccccCHHHHHhhcCCCCHHHHHH
Confidence 45799999999999999999999999999999999999999999999988631 1234788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHH
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHF 145 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~ 145 (358)
+|.+|+..++.+ ...++.+||..|+.. ++|......+++..+
T Consensus 436 lv~eA~~~A~~~----------------~~~lt~~dl~~a~~~-~~Pls~~~~e~i~~~ 477 (489)
T CHL00195 436 SIIEAMYIAFYE----------------KREFTTDDILLALKQ-FIPLAQTEKEQIEAL 477 (489)
T ss_pred HHHHHHHHHHHc----------------CCCcCHHHHHHHHHh-cCCCcccCHHHHHHH
Confidence 999998887654 346899999999999 999865555544443
No 54
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.76 E-value=3.3e-18 Score=167.63 Aligned_cols=115 Identities=45% Similarity=0.732 Sum_probs=104.4
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
+||+...++|+||+|||+++.||+|++||||||..|+|++|+.++|.+||+.+++++ ....+.++..+|..|+|||
T Consensus 262 ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~----~~~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 262 MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM----NLADDVDLEELAELTEGAS 337 (389)
T ss_pred ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC----CCCCcCCHHHHHHHcCCCC
Confidence 577887889999999999999999999999999999999999999999999999876 4556789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAF 135 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~ 135 (358)
|+||+++|++|.+.|+++ ....++.+||.+|+.. ++++.
T Consensus 338 gadl~~l~~eA~~~a~~~---------------~~~~i~~~d~~~A~~~-~~~~~ 376 (389)
T PRK03992 338 GADLKAICTEAGMFAIRD---------------DRTEVTMEDFLKAIEK-VMGKE 376 (389)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHH-Hhccc
Confidence 999999999999999876 3446999999999999 77764
No 55
>KOG0729|consensus
Probab=99.76 E-value=4.4e-19 Score=159.60 Aligned_cols=110 Identities=38% Similarity=0.621 Sum_probs=103.9
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||..+++|-|+.|||+|+.||||++||||+|++++|.+||.+.|..||+.|.+.+ +...+.-++.||..|.+-|
T Consensus 308 ldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm----sverdir~ellarlcpnst 383 (435)
T KOG0729|consen 308 LDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM----SVERDIRFELLARLCPNST 383 (435)
T ss_pred ccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc----ccccchhHHHHHhhCCCCc
Confidence 699999999999999999999999999999999999999999999999999999988 5778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|++|+.+|.+|.|.|++. .....|..||+.|+.+
T Consensus 384 gaeirsvcteagmfaira---------------rrk~atekdfl~av~k 417 (435)
T KOG0729|consen 384 GAEIRSVCTEAGMFAIRA---------------RRKVATEKDFLDAVNK 417 (435)
T ss_pred chHHHHHHHHhhHHHHHH---------------HhhhhhHHHHHHHHHH
Confidence 999999999999999986 3556799999999988
No 56
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-18 Score=174.78 Aligned_cols=110 Identities=44% Similarity=0.647 Sum_probs=103.1
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||||.++.+|+||++||||+-||||++||||||+.|.+++||...|++|++.|.++. .+..++++..+|+.|.|||
T Consensus 280 mDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~----~l~~~Vdl~~iAr~tpGfs 355 (596)
T COG0465 280 MDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK----PLAEDVDLKKIARGTPGFS 355 (596)
T ss_pred hccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC----CCCCcCCHHHHhhhCCCcc
Confidence 899999999999999999999999999999999999999999999999999999876 5778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+|+.+++.+|++.+.++ ....+++.||.+|+.+
T Consensus 356 GAdL~nl~NEAal~aar~---------------n~~~i~~~~i~ea~dr 389 (596)
T COG0465 356 GADLANLLNEAALLAARR---------------NKKEITMRDIEEAIDR 389 (596)
T ss_pred cchHhhhHHHHHHHHHHh---------------cCeeEeccchHHHHHH
Confidence 999999999999999887 4667888999998876
No 57
>KOG0739|consensus
Probab=99.76 E-value=4.1e-19 Score=161.95 Aligned_cols=132 Identities=30% Similarity=0.466 Sum_probs=112.5
Q ss_pred CCCccC-CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC
Q psy3629 1 MDGVER-LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF 79 (358)
Q Consensus 1 lDg~~~-~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~ 79 (358)
|.|+.. +.+|+|+||||-||.||.|++| ||+++|++|+|+..+|..+|+.++...+ +...+.|+++|+.+|+||
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp---~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTP---HVLTEQDFKELARKTEGY 334 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCc---cccchhhHHHHHhhcCCC
Confidence 456654 4479999999999999999999 9999999999999999999999998875 567889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcc-------------------------------ccChhhhhhhccCHHHHHHhhh
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKV-------------------------------EVDPQALEKLCITRADFLHALE 128 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~-------------------------------~~~~~~~~~~~v~~~Df~~al~ 128 (358)
||+||.-++++|.|+.+++........ .++.+.+-.+++++.||+.++.
T Consensus 335 SGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~ 414 (439)
T KOG0739|consen 335 SGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLS 414 (439)
T ss_pred CcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHh
Confidence 999999999999999999876543211 1223445578899999999999
Q ss_pred cCccCCCCCC
Q psy3629 129 TDIKPAFGSS 138 (358)
Q Consensus 129 ~~~kps~~~s 138 (358)
+ .+|+...+
T Consensus 415 ~-tkPTvn~~ 423 (439)
T KOG0739|consen 415 R-TKPTVNED 423 (439)
T ss_pred h-cCCCCCHH
Confidence 9 99997544
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.2e-18 Score=172.25 Aligned_cols=119 Identities=42% Similarity=0.694 Sum_probs=108.1
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||++...+|+||+|||+||.||+|++||||||..|+|++||.++|.+||+.++..... ....+.+++.+++.|+|||
T Consensus 370 ~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~--~~~~~~~~~~l~~~t~~~s 447 (494)
T COG0464 370 LDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP--PLAEDVDLEELAEITEGYS 447 (494)
T ss_pred hcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC--cchhhhhHHHHHHHhcCCC
Confidence 68999999999999999999999999999999999999999999999999999985431 2467899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
|+||..+|++|++.++++.. ...+++.||..|++. ++|+..
T Consensus 448 gadi~~i~~ea~~~~~~~~~--------------~~~~~~~~~~~a~~~-~~p~~~ 488 (494)
T COG0464 448 GADIAALVREAALEALREAR--------------RREVTLDDFLDALKK-IKPSVT 488 (494)
T ss_pred HHHHHHHHHHHHHHHHHHhc--------------cCCccHHHHHHHHHh-cCCCCC
Confidence 99999999999999998732 446999999999999 999853
No 59
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.74 E-value=6.5e-18 Score=166.51 Aligned_cols=110 Identities=36% Similarity=0.626 Sum_probs=102.0
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....++.||+|||+++.||+|++||||||.+|+|++|+.++|.+||+.++.++ .+..+.+++.++..|+|||
T Consensus 314 Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~----~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM----TLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred HhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC----CCCcCcCHHHHHHhcCCCC
Confidence 578887889999999999999999999999999999999999999999999999887 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||+++|++|.+.|+++ +...|+.+||..|+++
T Consensus 390 gAdI~~i~~eA~~~Alr~---------------~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 390 GADIKAICTEAGLLALRE---------------RRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCCccCHHHHHHHHHH
Confidence 999999999999999887 3557999999999988
No 60
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.73 E-value=1.2e-17 Score=173.18 Aligned_cols=113 Identities=41% Similarity=0.603 Sum_probs=102.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+..+.+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.|+++. .+..+.++..+|+.|.|||
T Consensus 282 mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~----~l~~~~d~~~la~~t~G~s 357 (644)
T PRK10733 282 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV----PLAPDIDAAIIARGTPGFS 357 (644)
T ss_pred hhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC----CCCCcCCHHHHHhhCCCCC
Confidence 689988889999999999999999999999999999999999999999999999886 4567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKP 133 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kp 133 (358)
|+||.++|++|+..|+++ +...++..||..|+.+ +.+
T Consensus 358 gadl~~l~~eAa~~a~r~---------------~~~~i~~~d~~~a~~~-v~~ 394 (644)
T PRK10733 358 GADLANLVNEAALFAARG---------------NKRVVSMVEFEKAKDK-IMM 394 (644)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCcccHHHHHHHHHH-Hhc
Confidence 999999999999888765 3457899999999876 543
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.72 E-value=2.5e-17 Score=179.39 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=94.1
Q ss_pred CCCcc---CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccC-chhhHHHHHHhc
Q psy3629 1 MDGVE---RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLA-DDVNLKELAALT 76 (358)
Q Consensus 1 lDg~~---~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~-~~~~l~~la~~t 76 (358)
|||.. +..+|+||||||+|+.||||++||||||+.|+|++|+..+|++++..++...+ . ... ...+++.+|..|
T Consensus 1761 LDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg-~-~L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206 1761 LSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRG-F-HLEKKMFHTNGFGSIT 1838 (2281)
T ss_pred hccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcC-C-CCCcccccHHHHHHhC
Confidence 56663 45689999999999999999999999999999999999999999986542211 0 222 236799999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 77 KNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 77 ~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.|||||||+++|.+|++.|+++ +...|+..++..|+.+
T Consensus 1839 ~GfSGADLanLvNEAaliAirq---------------~ks~Id~~~I~~Al~R 1876 (2281)
T CHL00206 1839 MGSNARDLVALTNEALSISITQ---------------KKSIIDTNTIRSALHR 1876 (2281)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHHH
Confidence 9999999999999999999887 4567899999999987
No 62
>KOG0735|consensus
Probab=99.72 E-value=2.4e-17 Score=164.72 Aligned_cols=102 Identities=38% Similarity=0.636 Sum_probs=95.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||.+.-.+|+|+|||.||+.||||++||||+|+.++.++|+..+|.+|++.+.... ...++.|++.+|.+|+|||
T Consensus 795 lDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~----~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 795 LDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL----LKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred hccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc----CCccccchHHHhhhcCCCc
Confidence 799999999999999999999999999999999999999999999999999988765 5778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKV 106 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~ 106 (358)
||||+.++-.|.+.++++++...+..
T Consensus 871 gADlq~ll~~A~l~avh~~l~~~~~~ 896 (952)
T KOG0735|consen 871 GADLQSLLYNAQLAAVHEILKREDEE 896 (952)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999988776543
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.71 E-value=4.7e-17 Score=164.53 Aligned_cols=110 Identities=43% Similarity=0.645 Sum_probs=99.4
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+.++++|+||+|||+|+.||||++||||||.+|++++|+.++|.+||+.+++.. ....+.++..+|+.|.|||
T Consensus 185 ~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~----~~~~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 185 MDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK----KLAPDVDLKAVARRTPGFS 260 (495)
T ss_pred hccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC----CCCcchhHHHHHHhCCCCC
Confidence 588888889999999999999999999999999999999999999999999999875 3446788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||+++|++|+..+.++ +...++.+||..|+.+
T Consensus 261 gadl~~l~~eA~~~a~~~---------------~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 261 GADLANLLNEAALLAARK---------------NKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHH
Confidence 999999999998877654 3456999999999987
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.68 E-value=2.3e-16 Score=153.67 Aligned_cols=110 Identities=45% Similarity=0.738 Sum_probs=99.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
+||+...+++.||+|||+++.+|++++||||||..|+|++|+.++|.+||+.++..+ ....+.+++.++..|+|||
T Consensus 253 ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~----~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 253 LDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM----KLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred hhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC----CCCccCCHHHHHHHcCCCC
Confidence 466766789999999999999999999999999999999999999999999998776 3555688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||+++|++|.+.|+++ +...++.+||.+|+.+
T Consensus 329 g~dl~~l~~~A~~~a~~~---------------~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 329 GADLKAICTEAGMFAIRE---------------ERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHHHHHHh---------------CCCccCHHHHHHHHHH
Confidence 999999999999999876 3457999999999976
No 65
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.67 E-value=2.1e-16 Score=141.94 Aligned_cols=112 Identities=30% Similarity=0.524 Sum_probs=98.4
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+..+.+|+.|+|||+|+.||+|++. ||+..|+|.+|+.++|..|++.+.+.+ ++.-+.+++.++++|.|+|
T Consensus 246 lDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~----Plpv~~~~~~~~~~t~g~S 319 (368)
T COG1223 246 LDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKF----PLPVDADLRYLAAKTKGMS 319 (368)
T ss_pred ccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhC----CCccccCHHHHHHHhCCCC
Confidence 7999999999999999999999999999 999999999999999999999999998 4777888999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 81 GAELEG-LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 81 gadi~~-l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
|.||+. ++..|+..|+.+ +...++.+|++.|+.+ .++.
T Consensus 320 gRdikekvlK~aLh~Ai~e---------------d~e~v~~edie~al~k-~r~~ 358 (368)
T COG1223 320 GRDIKEKVLKTALHRAIAE---------------DREKVEREDIEKALKK-ERKR 358 (368)
T ss_pred chhHHHHHHHHHHHHHHHh---------------chhhhhHHHHHHHHHh-hccc
Confidence 999965 555566666654 3456899999999987 4444
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.67 E-value=2.6e-16 Score=161.98 Aligned_cols=110 Identities=41% Similarity=0.666 Sum_probs=100.2
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+..+.+|+||+|||+|+.||+|++||||||.+|+|++|+.++|.+||+.+++.. ....+.++..+|..|.|||
T Consensus 313 ~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----~~~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 313 MDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----KLSPDVSLELIARRTPGFS 388 (638)
T ss_pred hccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----ccchhHHHHHHHhcCCCCC
Confidence 588888889999999999999999999999999999999999999999999999874 4567889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+||+++|++|+..+.++ +...++.+||..|+.+
T Consensus 389 gaDL~~lvneAal~a~r~---------------~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 389 GADLANLLNEAAILTARR---------------KKATITMKEIDTAIDR 422 (638)
T ss_pred HHHHHHHHHHHHHHHHHh---------------CCCCcCHHHHHHHHHH
Confidence 999999999998877765 3456899999999987
No 67
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=7.2e-16 Score=161.32 Aligned_cols=255 Identities=20% Similarity=0.234 Sum_probs=148.3
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccC-chhhHHHHHHhcCC-
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLA-DDVNLKELAALTKN- 78 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~-~~~~l~~la~~t~g- 78 (358)
.++++.+||+||.++ .+|+|+.| ||+ .|+|+.|+.+++..||+.+...+..++.+. .+..+..+++.+..
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 356799999999875 58999999 995 899999999999999999887776544432 44555555555444
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCcc-CCCCCChhh------hHHHhh
Q psy3629 79 ----FSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIK-PAFGSSDES------LEHFLS 147 (358)
Q Consensus 79 ----~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~k-ps~~~s~~~------l~~~~~ 147 (358)
+-+...-.++.+|+... +..... .....++.+|+.+.+.+... |.......+ +.....
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~~---------~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~ 457 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPVS---------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCccc---------ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhc
Confidence 34556777888776432 111000 01235778888888776222 111111111 111111
Q ss_pred cCcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 148 RGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 148 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
...++-++.+..+..........+.. ..+|...+||+|| ||+ ||.+ |+++ +...+.++
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~-~~kp~~~~Lf~GP--~GvGKT~l---Ak~L---------------A~~l~~~~ 516 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGH-EHKPVGSFLFAGP--TGVGKTEV---TVQL---------------SKALGIEL 516 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccC-CCCCcceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCc
Confidence 12222222222222222211111111 1234567999999 999 9999 8888 44445555
Q ss_pred ccccCcccc-----c-------ccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccc
Q psy3629 227 TLAYSPDVK-----R-------GFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 227 ~~~~~~~~~-----~-------~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~Dei 294 (358)
+.+.+++.. + +|+|..+.. .+.+..+....||||||||
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g------------------------------~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGG------------------------------LLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccc------------------------------hHHHHHHhCCCcEEEeccH
Confidence 555544331 1 122221110 1133344556699999999
Q ss_pred hhhhhhcCCCCCCcchhhHHHHHHHHccC-CC--C------CCCCEEEEEecC
Q psy3629 295 DAICKARGTAGGNTGVHDTVVNQLLSKMD-GV--E------RLNNILVIGMTN 338 (358)
Q Consensus 295 D~~~~~r~~~~~~~~~~~~~~~~lL~~ld-~~--~------~~~~v~vi~aTn 338 (358)
|.+-+ .+.+.||+.|| |. . ...++++|+|||
T Consensus 567 eka~~-------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 567 EKAHP-------------DVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred hhhhH-------------HHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 99832 36677777777 32 1 125799999999
No 68
>KOG0740|consensus
Probab=99.63 E-value=4.7e-16 Score=150.66 Aligned_cols=123 Identities=28% Similarity=0.345 Sum_probs=103.0
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
.++|+||||||+||.+|.|++| ||.++++||+|+++.|..+|+.++...+ ....+.+++.|++.|+||||+||.+
T Consensus 288 ~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~---~~l~~~d~~~l~~~Tegysgsdi~~ 362 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQP---NGLSDLDISLLAKVTEGYSGSDITA 362 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCC---CCccHHHHHHHHHHhcCcccccHHH
Confidence 4589999999999999999999 9999999999999999999999998863 4557789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCCC
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFGS 137 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~ 137 (358)
+|.+|++-.++.......... ......++++..||..+++. ++|+...
T Consensus 363 l~kea~~~p~r~~~~~~~~~~--~~~~~~r~i~~~df~~a~~~-i~~~~s~ 410 (428)
T KOG0740|consen 363 LCKEAAMGPLRELGGTTDLEF--IDADKIRPITYPDFKNAFKN-IKPSVSL 410 (428)
T ss_pred HHHHhhcCchhhcccchhhhh--cchhccCCCCcchHHHHHHh-hccccCc
Confidence 999999877766443211111 12234578899999999999 9998643
No 69
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.63 E-value=2.3e-15 Score=150.61 Aligned_cols=123 Identities=28% Similarity=0.476 Sum_probs=95.8
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccc------ccCchhhHHHHHH
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYK------KLADDVNLKELAA 74 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~------~~~~~~~l~~la~ 74 (358)
|||+...++|+||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++....... .-....++..+++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHH
Confidence 6899988899999999999999999999999999999999999999999999986521100 0011122333332
Q ss_pred h-----------------------------cCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHH
Q psy3629 75 L-----------------------------TKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLH 125 (358)
Q Consensus 75 ~-----------------------------t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~ 125 (358)
. ++.+||++|+++|..|...|+++.+... ...++.+|+..
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-----------~~~~~~~~l~~ 473 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-----------QVGLRIEHLLA 473 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-----------CcCcCHHHHHH
Confidence 2 5678999999999999999998876432 34689999999
Q ss_pred hhhcCccCC
Q psy3629 126 ALETDIKPA 134 (358)
Q Consensus 126 al~~~~kps 134 (358)
|+..+.+.+
T Consensus 474 a~~~e~~~~ 482 (512)
T TIGR03689 474 AVLDEFRES 482 (512)
T ss_pred HHHHhhccc
Confidence 998755544
No 70
>KOG0744|consensus
Probab=99.58 E-value=4.1e-16 Score=143.87 Aligned_cols=136 Identities=23% Similarity=0.269 Sum_probs=99.8
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
+=+|++|| ||| ||+| +++++.++ ..++........++.+++..++++|.++|...
T Consensus 178 RliLlhGP--PGTGKTSL---CKaLaQkL------SIR~~~~y~~~~liEinshsLFSKWFsESgKl------------- 233 (423)
T KOG0744|consen 178 RLILLHGP--PGTGKTSL---CKALAQKL------SIRTNDRYYKGQLIEINSHSLFSKWFSESGKL------------- 233 (423)
T ss_pred eEEEEeCC--CCCChhHH---HHHHHHhh------eeeecCccccceEEEEehhHHHHHHHhhhhhH-------------
Confidence 55899999 999 9999 99885443 11222233344456666666666666666555
Q ss_pred ccccccCCCCchhHHHHHHhhcCCC-----CCceEEEEccchhhhhhcCCCCCCcchh--hHHHHHHHHccCCCCCCCCE
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPN-----SGLHIIIFDEIDAICKARGTAGGNTGVH--DTVVNQLLSKMDGVERLNNI 331 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~-----~~p~iif~DeiD~~~~~r~~~~~~~~~~--~~~~~~lL~~ld~~~~~~~v 331 (358)
|.++ |++-.+ ..-..++|||+++++..|....+++..+ =|++|.|||+||.+....+|
T Consensus 234 V~km---------------F~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 234 VAKM---------------FQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred HHHH---------------HHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 4444 665432 3445778999999999995544444444 48999999999999999999
Q ss_pred EEEEecCCccccchhcCCCCCCccc
Q psy3629 332 LVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 332 ~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++++|+|--+.||.|+.- |=|.+
T Consensus 299 liL~TSNl~~siD~AfVD--RADi~ 321 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVD--RADIV 321 (423)
T ss_pred EEEeccchHHHHHHHhhh--Hhhhe
Confidence 999999999999999997 77654
No 71
>KOG0651|consensus
Probab=99.56 E-value=9.6e-16 Score=140.79 Aligned_cols=110 Identities=35% Similarity=0.616 Sum_probs=99.8
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||++..++|-+|.|||+|+.||||++||||+|+++++|+|+...|..|++.+-+.+ ......+.+.+.+.++||.
T Consensus 263 mdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i----~~~Geid~eaivK~~d~f~ 338 (388)
T KOG0651|consen 263 MDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI----DFHGEIDDEAILKLVDGFN 338 (388)
T ss_pred hccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccc----cccccccHHHHHHHHhccC
Confidence 799999999999999999999999999999999999999999999999999998876 3456677999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|+|++++|++|.+.++++ ....+.++||+.++++
T Consensus 339 gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 339 GADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred hHHHhhhcccccccccch---------------hhHHHhHHHHHHHHHH
Confidence 999999999999888765 3455778999999876
No 72
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.56 E-value=2.7e-14 Score=150.54 Aligned_cols=256 Identities=18% Similarity=0.217 Sum_probs=145.6
Q ss_pred CCCeEEEEecCCC-----CCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccc-cCchhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNRR-----DMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKK-LADDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~p-----~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~-~~~~~~l~~la~~t~g~s 80 (358)
++.+.+|||||.. ..+|+|+.| ||+ .|+|+.|+.+++.+||+.+...+..++. ...+..+..++..+..|-
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 4679999999973 368999999 996 7999999999999999987766543322 235667777777776664
Q ss_pred HHH-----HHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCcc-CCCCCChh------hhHHHhhc
Q psy3629 81 GAE-----LEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIK-PAFGSSDE------SLEHFLSR 148 (358)
Q Consensus 81 gad-----i~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~k-ps~~~s~~------~l~~~~~~ 148 (358)
+.. --.++.+|+... + +.. .......++.+|+..++..... |....+.. .+......
T Consensus 386 ~~r~~P~kai~lld~a~a~~--~-~~~--------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~ 454 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASF--R-LRP--------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKA 454 (731)
T ss_pred ccccCCHHHHHHHHHhhhhh--h-cCc--------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhc
Confidence 332 123344443211 1 000 0012345889999999887221 22111111 11122222
Q ss_pred CcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccc
Q psy3629 149 GILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFT 227 (358)
Q Consensus 149 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (358)
..++-++.++.+..........+... .++...+||.|| ||+ ||.+ |+++. ...+.+++
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~-~~p~~~~lf~Gp--~GvGKT~l---A~~la---------------~~l~~~~~ 513 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNP-NKPVGSFLFTGP--TGVGKTEL---AKQLA---------------EALGVHLE 513 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCC-CCCceeEEEECC--CCccHHHH---HHHHH---------------HHhcCCeE
Confidence 23332222233222221111111111 123445899999 999 9999 88883 33334444
Q ss_pred cccCcccc------------cccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccch
Q psy3629 228 LAYSPDVK------------RGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEID 295 (358)
Q Consensus 228 ~~~~~~~~------------~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD 295 (358)
.+..++.. .+|+|..+.. ++.+..+....+||||||||
T Consensus 514 ~~d~se~~~~~~~~~lig~~~gyvg~~~~~------------------------------~l~~~~~~~p~~VvllDEie 563 (731)
T TIGR02639 514 RFDMSEYMEKHTVSRLIGAPPGYVGFEQGG------------------------------LLTEAVRKHPHCVLLLDEIE 563 (731)
T ss_pred EEeCchhhhcccHHHHhcCCCCCcccchhh------------------------------HHHHHHHhCCCeEEEEechh
Confidence 44433321 1233332221 12344455667999999999
Q ss_pred hhhhhcCCCCCCcchhhHHHHHHHHccCCCC---------CCCCEEEEEecCCc
Q psy3629 296 AICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------RLNNILVIGMTNRR 340 (358)
Q Consensus 296 ~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~ 340 (358)
.+-+ .+.+.||+.||+-. ...++++|+|||..
T Consensus 564 ka~~-------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g 604 (731)
T TIGR02639 564 KAHP-------------DIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAG 604 (731)
T ss_pred hcCH-------------HHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcc
Confidence 7632 35677777777420 13578999999874
No 73
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=2e-11 Score=130.18 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=57.1
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccc-cCchhhHHHHHHhcCCC
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKK-LADDVNLKELAALTKNF 79 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~-~~~~~~l~~la~~t~g~ 79 (358)
.++.+.+||||+..+ .+|+|+.| || ..|+|+.|+.+++..||+.+...+..++. ..++..+..+++.+.+|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 356799999999753 59999999 99 58999999999999999877766543333 23677788888888777
Q ss_pred C
Q psy3629 80 S 80 (358)
Q Consensus 80 s 80 (358)
-
T Consensus 390 i 390 (852)
T TIGR03345 390 I 390 (852)
T ss_pred c
Confidence 3
No 74
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.29 E-value=1.3e-11 Score=117.61 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=74.1
Q ss_pred cCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC----CC
Q psy3629 5 ERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN----FS 80 (358)
Q Consensus 5 ~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g----~s 80 (358)
+...+|+||+|||+|+.||||++||||||+.+ .+|+.++|.+||+.+++.. .+ +..++..|++.++| |+
T Consensus 264 ~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~----~l-~~~dv~~Lv~~f~gq~~Df~ 336 (413)
T PLN00020 264 EEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD----GV-SREDVVKLVDTFPGQPLDFF 336 (413)
T ss_pred ccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccC----CC-CHHHHHHHHHcCCCCCchhh
Confidence 34668999999999999999999999999975 5899999999999999875 23 46899999999987 67
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3629 81 GAELEGLVRAAQSCAMNR 98 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r 98 (358)
||--..+..++....+.+
T Consensus 337 GAlrar~yd~~v~~~i~~ 354 (413)
T PLN00020 337 GALRARVYDDEVRKWIAE 354 (413)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 887788888877666655
No 75
>KOG0742|consensus
Probab=99.29 E-value=4.4e-12 Score=120.59 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=96.5
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+++.+||||| ||| ||+. |+.+ +...+..+....+.++. .+|.. +
T Consensus 382 apfRNilfyGP--PGTGKTm~---Arel---------------Ar~SGlDYA~mTGGDVA--PlG~q--a---------- 427 (630)
T KOG0742|consen 382 APFRNILFYGP--PGTGKTMF---AREL---------------ARHSGLDYAIMTGGDVA--PLGAQ--A---------- 427 (630)
T ss_pred chhhheeeeCC--CCCCchHH---HHHH---------------HhhcCCceehhcCCCcc--ccchH--H----------
Confidence 46899999999 999 9999 9999 77788777777666662 12222 1
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCc-eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGL-HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p-~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
| -.|+++|..|+++.. -+|||||.|+++..|....- +......+|.||-..- +.+++++++
T Consensus 428 ---V------------TkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaLNAlLfRTG--dqSrdivLv 489 (630)
T KOG0742|consen 428 ---V------------TKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG--DQSRDIVLV 489 (630)
T ss_pred ---H------------HHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHHHHHHHHhc--ccccceEEE
Confidence 1 234666999998765 58999999999999865432 2355678999998765 344579999
Q ss_pred EecCCccccchhcCCCCCCccc
Q psy3629 335 GMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
.|||+|..+|.|+-- |||-.
T Consensus 490 lAtNrpgdlDsAV~D--Ride~ 509 (630)
T KOG0742|consen 490 LATNRPGDLDSAVND--RIDEV 509 (630)
T ss_pred eccCCccchhHHHHh--hhhhe
Confidence 999999999999988 88854
No 76
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.26 E-value=3.7e-11 Score=127.64 Aligned_cols=126 Identities=21% Similarity=0.165 Sum_probs=85.9
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDV 259 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 259 (358)
.++|+|| ||| ||.+ |+++ +...+.+++.+..... ... .. +
T Consensus 349 ~lll~Gp--pG~GKT~l---Ak~i---------------A~~l~~~~~~i~~~~~----~~~--~~-------------i 389 (775)
T TIGR00763 349 ILCLVGP--PGVGKTSL---GKSI---------------AKALNRKFVRFSLGGV----RDE--AE-------------I 389 (775)
T ss_pred eEEEECC--CCCCHHHH---HHHH---------------HHHhcCCeEEEeCCCc----ccH--HH-------------H
Confidence 5999999 999 9999 9999 6666667776653221 000 00 1
Q ss_pred cccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-----CC--------
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-----VE-------- 326 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-----~~-------- 326 (358)
..-...+.|.....+.+.|..|....| ||||||||.+.+...+ . ..+.||..||. +.
T Consensus 390 ~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---~------~~~aLl~~ld~~~~~~f~d~~~~~~~ 459 (775)
T TIGR00763 390 RGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---D------PASALLEVLDPEQNNAFSDHYLDVPF 459 (775)
T ss_pred cCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---C------HHHHHHHhcCHHhcCccccccCCcee
Confidence 111233455555566677998888777 7899999999854211 1 24566666663 10
Q ss_pred CCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 327 RLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 327 ~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
..+++++|+|||+++.||+++++ ||++-+
T Consensus 460 d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~ 488 (775)
T TIGR00763 460 DLSKVIFIATANSIDTIPRPLLD--RMEVIE 488 (775)
T ss_pred ccCCEEEEEecCCchhCCHHHhC--CeeEEe
Confidence 12479999999999999999999 997643
No 77
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.5e-11 Score=123.71 Aligned_cols=277 Identities=20% Similarity=0.238 Sum_probs=158.7
Q ss_pred CCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccC-chhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLA-DDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~-~~~~l~~la~~t~g~s 80 (358)
++.+-+||||..-+ .-|+|+-| || ..|.+.-|+.++-..||+.+-..+..++.+. .+.-+...+..+..|-
T Consensus 297 RGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI 373 (786)
T COG0542 297 RGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYI 373 (786)
T ss_pred cCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhc
Confidence 45688999997533 56999999 99 7899999999999999998888876555532 4555555555544431
Q ss_pred H-----HHHHHHHHHHHHHHHH------------H----------------------HHHh---cCccccC--hhhhhhh
Q psy3629 81 G-----AELEGLVRAAQSCAMN------------R----------------------LIKA---TNKVEVD--PQALEKL 116 (358)
Q Consensus 81 g-----adi~~l~~~A~~~a~~------------r----------------------~~~~---~~~~~~~--~~~~~~~ 116 (358)
. .----++.+|+..... + .+.. ......+ ......
T Consensus 374 ~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 452 (786)
T COG0542 374 PDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA- 452 (786)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-
Confidence 1 0001112222111000 0 0000 0000000 000111
Q ss_pred ccCHHHHHHhhhcCcc-CCCCCChh------hhHHHhhcCcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCC
Q psy3629 117 CITRADFLHALETDIK-PAFGSSDE------SLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKV 189 (358)
Q Consensus 117 ~v~~~Df~~al~~~~k-ps~~~s~~------~l~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~ 189 (358)
.|+.+++.+++.+... |....... .++.......++-++.+..+...+......+... .+|..+.||.||
T Consensus 453 ~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp-~rPigsFlF~GP-- 529 (786)
T COG0542 453 EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDP-NRPIGSFLFLGP-- 529 (786)
T ss_pred ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCC-CCCceEEEeeCC--
Confidence 2555666666665222 11111111 1111111222222222222222222222223332 356678999999
Q ss_pred CCc-hhhhhhHHhhhcccccccccccc---cccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccC
Q psy3629 190 PTD-ELSLSNFAAANKDDFVEDTKHIE---VTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFN 265 (358)
Q Consensus 190 pg~-kt~l~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~ 265 (358)
.|+ ||.+ |+++...++.+...+. |....+.+..--.+-+|+. |||..+.. .+
T Consensus 530 TGVGKTEL---AkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPG---YVGyeeGG---------------~L--- 585 (786)
T COG0542 530 TGVGKTEL---AKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPG---YVGYEEGG---------------QL--- 585 (786)
T ss_pred CcccHHHH---HHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCC---Cceecccc---------------ch---
Confidence 999 9999 9999988887776643 4344444544455666666 99998866 23
Q ss_pred CCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC---C------CCCCEEEEEe
Q psy3629 266 PKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV---E------RLNNILVIGM 336 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~---~------~~~~v~vi~a 336 (358)
-+..|.+..|||+|||||.- +-.|+|-||+-||.= + ..++.++|+|
T Consensus 586 ------------TEaVRr~PySViLlDEIEKA-------------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 586 ------------TEAVRRKPYSVILLDEIEKA-------------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred ------------hHhhhcCCCeEEEechhhhc-------------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 56678888899999999984 245899999999842 1 1256999999
Q ss_pred cCC
Q psy3629 337 TNR 339 (358)
Q Consensus 337 Tn~ 339 (358)
||-
T Consensus 641 SN~ 643 (786)
T COG0542 641 SNA 643 (786)
T ss_pred ccc
Confidence 985
No 78
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=3.5e-10 Score=121.30 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=57.2
Q ss_pred CCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccccc-CchhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKL-ADDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~-~~~~~l~~la~~t~g~s 80 (358)
++.+.+||+|+..+ .+|+|+.| ||. .|.++.|+.+++..||+.+...+..++.+ ..+..+..++..+.+|-
T Consensus 300 ~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 300 RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 56799999999874 58999999 995 58999999999999999988887654443 35667777777777763
No 79
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.18 E-value=4.9e-10 Score=119.82 Aligned_cols=72 Identities=22% Similarity=0.315 Sum_probs=55.0
Q ss_pred CCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccccc-CchhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKL-ADDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~-~~~~~l~~la~~t~g~s 80 (358)
++.+.+||+|+..+ ..|+++.| ||. .|+++.|+.++...|++.+...+..+..+ .++..+..+++.+.+|.
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 46799999999864 58999999 995 58999999999999998776554332222 35566778888887775
Q ss_pred H
Q psy3629 81 G 81 (358)
Q Consensus 81 g 81 (358)
+
T Consensus 382 ~ 382 (821)
T CHL00095 382 A 382 (821)
T ss_pred c
Confidence 4
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.14 E-value=5.5e-11 Score=110.61 Aligned_cols=124 Identities=11% Similarity=0.201 Sum_probs=80.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...++|+|| ||| ||.+ |+.+...+.+. .......++.+.++++.+.|+|.+...
T Consensus 42 ~~~vll~Gp--pGtGKTtl---A~~ia~~l~~~--------~~~~~~~~v~~~~~~l~~~~~g~~~~~------------ 96 (261)
T TIGR02881 42 VLHMIFKGN--PGTGKTTV---ARILGKLFKEM--------NVLSKGHLIEVERADLVGEYIGHTAQK------------ 96 (261)
T ss_pred cceEEEEcC--CCCCHHHH---HHHHHHHHHhc--------CcccCCceEEecHHHhhhhhccchHHH------------
Confidence 456899999 999 9999 88885433211 111122355556666666666665544
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
++++ |+.|. ++||||||+|.|... . ........++.|++.|+.... ++++|+++
T Consensus 97 -~~~~---------------~~~a~---~~VL~IDE~~~L~~~--~---~~~~~~~~i~~Ll~~~e~~~~--~~~vila~ 150 (261)
T TIGR02881 97 -TREV---------------IKKAL---GGVLFIDEAYSLARG--G---EKDFGKEAIDTLVKGMEDNRN--EFVLILAG 150 (261)
T ss_pred -HHHH---------------HHhcc---CCEEEEechhhhccC--C---ccchHHHHHHHHHHHHhccCC--CEEEEecC
Confidence 4444 88875 479999999999632 1 111335678899999987543 56666665
Q ss_pred CCcc-----ccchhcCCCCCCcc
Q psy3629 338 NRRD-----MIDEALLRPGRLEV 355 (358)
Q Consensus 338 n~~~-----~iD~a~lr~GRfd~ 355 (358)
+..+ .++|++.+ ||+.
T Consensus 151 ~~~~~~~~~~~~p~L~s--Rf~~ 171 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRS--RFPI 171 (261)
T ss_pred CcchhHHHHhcChHHHh--ccce
Confidence 4332 37889998 9965
No 81
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.13 E-value=1.6e-11 Score=129.78 Aligned_cols=133 Identities=19% Similarity=0.115 Sum_probs=84.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...+++|+|| ||+ ||.+ ++++...+.+.... ..-.+..++.+....+.
T Consensus 202 ~~~n~lL~G~--pG~GKT~l---~~~la~~~~~~~~p-----~~l~~~~~~~~~~~~l~--------------------- 250 (731)
T TIGR02639 202 KKNNPLLVGE--PGVGKTAI---AEGLALRIAEGKVP-----ENLKNAKIYSLDMGSLL--------------------- 250 (731)
T ss_pred CCCceEEECC--CCCCHHHH---HHHHHHHHHhCCCc-----hhhcCCeEEEecHHHHh---------------------
Confidence 4567899999 999 9999 77774433211000 00012333333322221
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
. -..+.|+.|+.++.+|+.++...|+||||||||.|++.+...++. ..+-+.|+..|. ++.+.+|||
T Consensus 251 ---a--~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~----~~~~~~L~~~l~----~g~i~~Iga 317 (731)
T TIGR02639 251 ---A--GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS----MDASNLLKPALS----SGKLRCIGS 317 (731)
T ss_pred ---h--hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc----HHHHHHHHHHHh----CCCeEEEEe
Confidence 0 123456777777778999988889999999999999875432221 112233444443 357999999
Q ss_pred cCCcc-----ccchhcCCCCCCccc
Q psy3629 337 TNRRD-----MIDEALLRPGRLEVS 356 (358)
Q Consensus 337 Tn~~~-----~iD~a~lr~GRfd~~ 356 (358)
||..+ .+|+|+.| ||...
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~~i 340 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQKI 340 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCceE
Confidence 99754 47999999 99854
No 82
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.10 E-value=7e-11 Score=111.23 Aligned_cols=126 Identities=14% Similarity=0.169 Sum_probs=83.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
..+++|+|| ||| ||.+ |+++...+.+. .....-+++.+.++++.+.|+|.++..
T Consensus 58 ~~~vll~G~--pGTGKT~l---A~~ia~~l~~~--------g~~~~~~~v~v~~~~l~~~~~g~~~~~------------ 112 (284)
T TIGR02880 58 TLHMSFTGN--PGTGKTTV---ALRMAQILHRL--------GYVRKGHLVSVTRDDLVGQYIGHTAPK------------ 112 (284)
T ss_pred CceEEEEcC--CCCCHHHH---HHHHHHHHHHc--------CCcccceEEEecHHHHhHhhcccchHH------------
Confidence 457999999 999 9999 87663322110 111122466666666666666665444
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
++.+ |+.|. +++|||||+|.+.+.+.. ......+.++|++.|+.-. .+++||+||
T Consensus 113 -~~~~---------------~~~a~---~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~~--~~~~vI~a~ 167 (284)
T TIGR02880 113 -TKEI---------------LKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQR--DDLVVILAG 167 (284)
T ss_pred -HHHH---------------HHHcc---CcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcCC--CCEEEEEeC
Confidence 3444 88764 489999999999755321 1245678899999998543 468888887
Q ss_pred CC--ccc---cchhcCCCCCCccc
Q psy3629 338 NR--RDM---IDEALLRPGRLEVS 356 (358)
Q Consensus 338 n~--~~~---iD~a~lr~GRfd~~ 356 (358)
+. ++. ++|++.| ||+..
T Consensus 168 ~~~~~~~~~~~np~L~s--R~~~~ 189 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSS--RVAHH 189 (284)
T ss_pred CcHHHHHHHhhCHHHHh--hCCcE
Confidence 54 343 3799999 99854
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=99.09 E-value=7.3e-11 Score=111.15 Aligned_cols=125 Identities=15% Similarity=0.167 Sum_probs=82.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
..++|+|| ||| ||.+ |+++...+... .....-+++.+...++.+.|+|.++..
T Consensus 60 ~~ill~G~--pGtGKT~l---Ar~la~~~~~~--------g~~~~~~~~~v~~~~l~~~~~g~~~~~------------- 113 (287)
T CHL00181 60 LHMSFTGS--PGTGKTTV---ALKMADILYKL--------GYIKKGHLLTVTRDDLVGQYIGHTAPK------------- 113 (287)
T ss_pred ceEEEECC--CCCCHHHH---HHHHHHHHHHc--------CCCCCCceEEecHHHHHHHHhccchHH-------------
Confidence 45899999 999 9999 88884432110 111122356666666666666665543
Q ss_pred ccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
+..+ |+.|. ++||||||+|.++..++. +.....+++.|++.|+... .+++||+|++
T Consensus 114 ~~~~---------------l~~a~---ggVLfIDE~~~l~~~~~~----~~~~~e~~~~L~~~me~~~--~~~~vI~ag~ 169 (287)
T CHL00181 114 TKEV---------------LKKAM---GGVLFIDEAYYLYKPDNE----RDYGSEAIEILLQVMENQR--DDLVVIFAGY 169 (287)
T ss_pred HHHH---------------HHHcc---CCEEEEEccchhccCCCc----cchHHHHHHHHHHHHhcCC--CCEEEEEeCC
Confidence 3333 88764 479999999999765322 2245778899999998644 4688888876
Q ss_pred Ccc-----ccchhcCCCCCCccc
Q psy3629 339 RRD-----MIDEALLRPGRLEVS 356 (358)
Q Consensus 339 ~~~-----~iD~a~lr~GRfd~~ 356 (358)
... .++|++.| ||+..
T Consensus 170 ~~~~~~~~~~np~L~s--R~~~~ 190 (287)
T CHL00181 170 KDRMDKFYESNPGLSS--RIANH 190 (287)
T ss_pred cHHHHHHHhcCHHHHH--hCCce
Confidence 432 23589999 99854
No 84
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.03 E-value=3.1e-09 Score=113.84 Aligned_cols=71 Identities=18% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccC-chhhHHHHHHhcCCC
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLA-DDVNLKELAALTKNF 79 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~-~~~~l~~la~~t~g~ 79 (358)
.++.+.+||||+..+ .+|+|+.| ||+ .|.++.|+.+++..||+.+...+..++.+. .+..+...+..+++|
T Consensus 304 ~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 304 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 356799999999987 48999999 997 689999999999999998887764443322 444455555555444
No 85
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.96 E-value=1.6e-10 Score=121.52 Aligned_cols=82 Identities=27% Similarity=0.315 Sum_probs=59.7
Q ss_pred CCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc---
Q psy3629 265 NPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--- 341 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--- 341 (358)
.+.|+.|..++.+|+.+++..|+|||||||+.|++.++..++. .....++..+| .+.++.+|||||.++
T Consensus 258 ~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~-~d~~nlLkp~L-------~~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ-VDAANLIKPLL-------SSGKIRVIGSTTYQEFSN 329 (758)
T ss_pred chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH-HHHHHHHHHHH-------hCCCeEEEecCChHHHHH
Confidence 4567788888888999988889999999999999885432211 11112232333 245799999999986
Q ss_pred --ccchhcCCCCCCccc
Q psy3629 342 --MIDEALLRPGRLEVS 356 (358)
Q Consensus 342 --~iD~a~lr~GRfd~~ 356 (358)
.+|+|+.| ||+.-
T Consensus 330 ~~~~D~AL~r--RFq~I 344 (758)
T PRK11034 330 IFEKDRALAR--RFQKI 344 (758)
T ss_pred HhhccHHHHh--hCcEE
Confidence 47999999 99853
No 86
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.92 E-value=4.4e-10 Score=120.30 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=57.9
Q ss_pred CCCCchhHHHHHHhhcC-CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc-
Q psy3629 265 NPKNTSEFLCTIILEAG-PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM- 342 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~- 342 (358)
.+.|+.|..++.+|+.+ +...|+||||||++.|++.++..++. .. -+.|...+ .++.+.+|||||..+.
T Consensus 250 ~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~--d~---~~~lkp~l----~~g~l~~IgaTt~~e~r 320 (857)
T PRK10865 250 KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM--DA---GNMLKPAL----ARGELHCVGATTLDEYR 320 (857)
T ss_pred chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch--hH---HHHhcchh----hcCCCeEEEcCCCHHHH
Confidence 45677788888889875 44678999999999999875433221 11 22222222 3458999999999985
Q ss_pred ----cchhcCCCCCCccc
Q psy3629 343 ----IDEALLRPGRLEVS 356 (358)
Q Consensus 343 ----iD~a~lr~GRfd~~ 356 (358)
+|+|+.| ||+..
T Consensus 321 ~~~~~d~al~r--Rf~~i 336 (857)
T PRK10865 321 QYIEKDAALER--RFQKV 336 (857)
T ss_pred HHhhhcHHHHh--hCCEE
Confidence 8999999 99753
No 87
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.86 E-value=1.1e-09 Score=117.14 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=84.3
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
.+...+++|+|| ||+ ||.+ ++.+...+...... ..-.+..++.+....+.
T Consensus 197 r~~~~n~lL~G~--pGvGKTal---~~~la~~i~~~~vp-----~~l~~~~i~~l~~~~l~------------------- 247 (821)
T CHL00095 197 RRTKNNPILIGE--PGVGKTAI---AEGLAQRIVNRDVP-----DILEDKLVITLDIGLLL------------------- 247 (821)
T ss_pred ccccCCeEEECC--CCCCHHHH---HHHHHHHHHhCCCC-----hhhcCCeEEEeeHHHHh-------------------
Confidence 345668999999 999 9999 77774332211000 00112333333322221
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHH-ccCCCCCCCCEEE
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLS-KMDGVERLNNILV 333 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~-~ld~~~~~~~v~v 333 (358)
. =+.+.|+.|..+..+|+.+++..|+|||||||+.|++.++..++. . ++.+|. .+. ++.+.+
T Consensus 248 -----a--g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~-----~-~a~lLkp~l~----rg~l~~ 310 (821)
T CHL00095 248 -----A--GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI-----D-AANILKPALA----RGELQC 310 (821)
T ss_pred -----c--cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc-----c-HHHHhHHHHh----CCCcEE
Confidence 1 124557777788888999988889999999999999875432221 1 222322 222 457999
Q ss_pred EEecCCccc-----cchhcCCCCCCccc
Q psy3629 334 IGMTNRRDM-----IDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~-----iD~a~lr~GRfd~~ 356 (358)
|||||..+. .|+++.| ||...
T Consensus 311 IgaTt~~ey~~~ie~D~aL~r--Rf~~I 336 (821)
T CHL00095 311 IGATTLDEYRKHIEKDPALER--RFQPV 336 (821)
T ss_pred EEeCCHHHHHHHHhcCHHHHh--cceEE
Confidence 999998863 7999999 99764
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.84 E-value=2e-09 Score=115.04 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=58.4
Q ss_pred CCCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc-
Q psy3629 265 NPKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM- 342 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~- 342 (358)
.+.|+.|+.++++|+.++. ..++|||||||+.+++.++..++. + +-|.|+..| .++.+.+||||+..+.
T Consensus 259 ~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~----d-~~n~Lkp~l----~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 259 SVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG----D-AANLLKPAL----ARGELRTIAATTWAEYK 329 (852)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc----c-HHHHhhHHh----hCCCeEEEEecCHHHHh
Confidence 4567778888888998864 578999999999999886433222 1 223333333 2457999999997654
Q ss_pred ----cchhcCCCCCCccc
Q psy3629 343 ----IDEALLRPGRLEVS 356 (358)
Q Consensus 343 ----iD~a~lr~GRfd~~ 356 (358)
+|+|+.| ||.+-
T Consensus 330 ~~~~~d~AL~r--Rf~~i 345 (852)
T TIGR03345 330 KYFEKDPALTR--RFQVV 345 (852)
T ss_pred hhhhccHHHHH--hCeEE
Confidence 8999999 99754
No 89
>KOG2004|consensus
Probab=98.81 E-value=1.1e-08 Score=103.73 Aligned_cols=125 Identities=22% Similarity=0.207 Sum_probs=82.8
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccccc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVK 260 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~ 260 (358)
+.|+|| ||. ||++ ++.+ |...+..|+.++-... ...++ .-++-+
T Consensus 441 lCf~GP--PGVGKTSI---~kSI---------------A~ALnRkFfRfSvGG~----tDvAe-------IkGHRR---- 485 (906)
T KOG2004|consen 441 LCFVGP--PGVGKTSI---AKSI---------------ARALNRKFFRFSVGGM----TDVAE-------IKGHRR---- 485 (906)
T ss_pred EEEeCC--CCCCcccH---HHHH---------------HHHhCCceEEEecccc----ccHHh-------hcccce----
Confidence 789999 999 9999 9999 7778888887652222 11111 111111
Q ss_pred ccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC-------------CC
Q psy3629 261 PFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV-------------ER 327 (358)
Q Consensus 261 ~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~-------------~~ 327 (358)
-|+|.-==.+-|+.+......| +++|||||.+. |+..|+. -+.||.-||.= -.
T Consensus 486 ----TYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDP-------asALLElLDPEQNanFlDHYLdVp~D 551 (906)
T KOG2004|consen 486 ----TYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDP-------ASALLELLDPEQNANFLDHYLDVPVD 551 (906)
T ss_pred ----eeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCCh-------HHHHHHhcChhhccchhhhccccccc
Confidence 1222111234566888898998 77889999997 3333322 24666666621 12
Q ss_pred CCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 328 LNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 328 ~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
.++|++|||+|..+.|.++||- |+++-+
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RMEvIe 579 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RMEVIE 579 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hhheee
Confidence 2579999999999999999998 888754
No 90
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.1e-08 Score=103.93 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=81.5
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc---------ccccccccHHHHHHHhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV---------KRGFIGFSLLQRKWAEL 251 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~g~s~~~~~~~~~ 251 (358)
++|.|| ||+ ||+| ++.+ |...+..|+.+.-..+ ..-|+|--...
T Consensus 353 LcLVGP--PGVGKTSL---gkSI---------------A~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGr------ 406 (782)
T COG0466 353 LCLVGP--PGVGKTSL---GKSI---------------AKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGK------ 406 (782)
T ss_pred EEEECC--CCCCchhH---HHHH---------------HHHhCCCEEEEecCccccHHHhccccccccccCChH------
Confidence 688999 999 9999 9988 7777777877653322 23344443333
Q ss_pred hccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC------
Q psy3629 252 SLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV------ 325 (358)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~------ 325 (358)
+-+. .++|....| ++++||||.+...= .+++ -+.||.-||.=
T Consensus 407 -------IiQ~---------------mkka~~~NP-v~LLDEIDKm~ss~-rGDP--------aSALLEVLDPEQN~~F~ 454 (782)
T COG0466 407 -------IIQG---------------MKKAGVKNP-VFLLDEIDKMGSSF-RGDP--------ASALLEVLDPEQNNTFS 454 (782)
T ss_pred -------HHHH---------------HHHhCCcCC-eEEeechhhccCCC-CCCh--------HHHHHhhcCHhhcCchh
Confidence 2233 888999998 67889999996541 1111 24666666621
Q ss_pred -------CCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 326 -------ERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 326 -------~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
...++|++|+|+|..+.|..+||- |+++-.
T Consensus 455 DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~ 491 (782)
T COG0466 455 DHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIR 491 (782)
T ss_pred hccccCccchhheEEEeecCccccCChHHhc--ceeeee
Confidence 123579999999999999999998 888754
No 91
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.78 E-value=1e-08 Score=101.00 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~ 255 (358)
+...+||+|| ||+ ||.+ |+++ +...+.+|+.+.+..+. .+|+|......
T Consensus 107 ~~~~iLl~Gp--~GtGKT~l---Ar~l---------------A~~l~~pf~~id~~~l~~~gyvG~d~e~~--------- 157 (412)
T PRK05342 107 QKSNILLIGP--TGSGKTLL---AQTL---------------ARILDVPFAIADATTLTEAGYVGEDVENI--------- 157 (412)
T ss_pred CCceEEEEcC--CCCCHHHH---HHHH---------------HHHhCCCceecchhhcccCCcccchHHHH---------
Confidence 4577999999 999 9999 9999 77778888888877664 46777754330
Q ss_pred cccccccccCCCCchhHHHHHHhhcC----CCCCceEEEEccchhhhhhcCCCCCCcchh-hHHHHHHHHccCCCC----
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAG----PNSGLHIIIFDEIDAICKARGTAGGNTGVH-DTVVNQLLSKMDGVE---- 326 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a----~~~~p~iif~DeiD~~~~~r~~~~~~~~~~-~~~~~~lL~~ld~~~---- 326 (358)
+..+ +..+ +...++||||||||.+...+...+....++ ..+.+.||+.|||-.
T Consensus 158 ---l~~l---------------~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 158 ---LLKL---------------LQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred ---HHHH---------------HHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 1111 2221 234679999999999987743222111122 357788999998631
Q ss_pred -------CCCCEEEEEecCC
Q psy3629 327 -------RLNNILVIGMTNR 339 (358)
Q Consensus 327 -------~~~~v~vi~aTn~ 339 (358)
...+.++|.|+|-
T Consensus 220 ~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred CCCCcCcCCCCeEEeccCCc
Confidence 1124677777776
No 92
>KOG0743|consensus
Probab=98.78 E-value=1.8e-08 Score=97.84 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=65.0
Q ss_pred CCCccCCC--CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 1 MDGVERLN--NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 1 lDg~~~~~--~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
+||+.+.. .-|+|.|||+++.||||++||||+|.+|+++.-+.++-..+++.|+..-. .+.+. .+++.+.+.++
T Consensus 328 iDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~--~eie~l~~~~~- 403 (457)
T KOG0743|consen 328 LDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-DHRLF--DEIERLIEETE- 403 (457)
T ss_pred hccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-Ccchh--HHHHHHhhcCc-
Confidence 68998766 68999999999999999999999999999999999999999999986421 01111 22333444444
Q ss_pred CCHHHHHHHH
Q psy3629 79 FSGAELEGLV 88 (358)
Q Consensus 79 ~sgadi~~l~ 88 (358)
.|+||+....
T Consensus 404 ~tPA~V~e~l 413 (457)
T KOG0743|consen 404 VTPAQVAEEL 413 (457)
T ss_pred cCHHHHHHHH
Confidence 6999986654
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.73 E-value=3.3e-09 Score=113.90 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc-
Q psy3629 265 NPKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM- 342 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~- 342 (358)
.+.|+.|+.+..+|+.++. ..|+|||||||+.|++.+...++ .+ ..|.|...+ .+..+.+|||||..+.
T Consensus 245 ~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~----~d-~~~~Lk~~l----~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 245 KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA----MD-AGNMLKPAL----ARGELHCIGATTLDEYR 315 (852)
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch----hH-HHHHhchhh----hcCceEEEEeCcHHHHH
Confidence 4557778888888998865 46899999999999976432221 11 223333222 3457999999999864
Q ss_pred ----cchhcCCCCCCccc
Q psy3629 343 ----IDEALLRPGRLEVS 356 (358)
Q Consensus 343 ----iD~a~lr~GRfd~~ 356 (358)
+|+|+.| ||...
T Consensus 316 ~~~~~d~al~r--Rf~~i 331 (852)
T TIGR03346 316 KYIEKDAALER--RFQPV 331 (852)
T ss_pred HHhhcCHHHHh--cCCEE
Confidence 7999999 99853
No 94
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.71 E-value=1.3e-07 Score=100.20 Aligned_cols=124 Identities=16% Similarity=0.131 Sum_probs=77.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDV 259 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 259 (358)
.++|+|| ||+ ||.+ ++.+ +...+.+++.+...... .. .. +
T Consensus 351 ~i~l~Gp--pG~GKTtl---~~~i---------------a~~l~~~~~~i~~~~~~----d~--~~-------------i 391 (784)
T PRK10787 351 ILCLVGP--PGVGKTSL---GQSI---------------AKATGRKYVRMALGGVR----DE--AE-------------I 391 (784)
T ss_pred eEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEEcCCCC----CH--HH-------------h
Confidence 4899999 999 9999 8888 55556666555422210 00 00 1
Q ss_pred cccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC-------------C
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV-------------E 326 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~-------------~ 326 (358)
..--..+.|...-.+.+.+..+....| ||||||||.+.....+ ...+.||..||.- .
T Consensus 392 ~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~ 461 (784)
T PRK10787 392 RGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDY 461 (784)
T ss_pred ccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccc
Confidence 111111223333334444777776666 7899999998654211 1245666666631 1
Q ss_pred CCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 327 RLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 327 ~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
..++|++|||||... |++|+|. ||++-
T Consensus 462 dls~v~~i~TaN~~~-i~~aLl~--R~~ii 488 (784)
T PRK10787 462 DLSDVMFVATSNSMN-IPAPLLD--RMEVI 488 (784)
T ss_pred cCCceEEEEcCCCCC-CCHHHhc--ceeee
Confidence 225799999999885 9999998 99864
No 95
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.70 E-value=2.1e-08 Score=98.55 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=74.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...+||+|| ||+ ||.+ |+++ +...+.+|..+.+..+. .+|+|......
T Consensus 116 ~~~iLL~GP--~GsGKT~l---AraL---------------A~~l~~pf~~~da~~L~~~gyvG~d~e~~---------- 165 (413)
T TIGR00382 116 KSNILLIGP--TGSGKTLL---AQTL---------------ARILNVPFAIADATTLTEAGYVGEDVENI---------- 165 (413)
T ss_pred CceEEEECC--CCcCHHHH---HHHH---------------HHhcCCCeEEechhhccccccccccHHHH----------
Confidence 467999999 999 9999 9999 76677777776666553 45777753220
Q ss_pred ccccccccCCCCchhHHHHHHhhcC----CCCCceEEEEccchhhhhhcCCCCCCcchh-hHHHHHHHHccCCCC-----
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAG----PNSGLHIIIFDEIDAICKARGTAGGNTGVH-DTVVNQLLSKMDGVE----- 326 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a----~~~~p~iif~DeiD~~~~~r~~~~~~~~~~-~~~~~~lL~~ld~~~----- 326 (358)
+..+ +..+ ....|+||||||||.+...+...+....++ ..+.+.||+.|+|..
T Consensus 166 --L~~~---------------~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~ 228 (413)
T TIGR00382 166 --LLKL---------------LQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPP 228 (413)
T ss_pred --HHHH---------------HHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceeccc
Confidence 1222 2221 234678999999999998653222111122 257788888888752
Q ss_pred ------CCCCEEEEEecCC
Q psy3629 327 ------RLNNILVIGMTNR 339 (358)
Q Consensus 327 ------~~~~v~vi~aTn~ 339 (358)
...+.++|.|+|-
T Consensus 229 ~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 229 QGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred CCCccccCCCeEEEEcCCc
Confidence 1235788888886
No 96
>KOG0742|consensus
Probab=98.69 E-value=7.1e-08 Score=92.34 Aligned_cols=82 Identities=28% Similarity=0.381 Sum_probs=67.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccc---c--------------------c
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYK---K--------------------L 63 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~---~--------------------~ 63 (358)
+.+++++.|||+|.++|.|+-- |||..|+||+|..++|..||+.|+.++-... . .
T Consensus 483 SrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~ 560 (630)
T KOG0742|consen 483 SRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGF 560 (630)
T ss_pred ccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccc
Confidence 4579999999999999999987 9999999999999999999999998773110 0 1
Q ss_pred CchhhHHHHHHhcCCCCHHHHHHHHHH
Q psy3629 64 ADDVNLKELAALTKNFSGAELEGLVRA 90 (358)
Q Consensus 64 ~~~~~l~~la~~t~g~sgadi~~l~~~ 90 (358)
..+.-+.+.|+.|+||||.+|..++..
T Consensus 561 ~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 561 DTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred hHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 112336789999999999999998854
No 97
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.61 E-value=3.4e-08 Score=97.24 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=45.8
Q ss_pred hhcCCC--CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC--------------------CCCCCCCEEEEE
Q psy3629 278 LEAGPN--SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD--------------------GVERLNNILVIG 335 (358)
Q Consensus 278 f~~a~~--~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld--------------------~~~~~~~v~vi~ 335 (358)
.+.|+. ..|+|||||||+..-..+ +...+++.|+ .+.--.++.|||
T Consensus 263 ~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIg 330 (459)
T PRK11331 263 CQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIG 330 (459)
T ss_pred HHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEE
Confidence 345554 468999999999854443 2233333222 233346899999
Q ss_pred ecCCcc----ccchhcCCCCCCcccc
Q psy3629 336 MTNRRD----MIDEALLRPGRLEVSE 357 (358)
Q Consensus 336 aTn~~~----~iD~a~lr~GRfd~~~ 357 (358)
|+|..| .+|.|++| ||...+
T Consensus 331 TMNt~Drs~~~lD~AlrR--RF~fi~ 354 (459)
T PRK11331 331 LMNTADRSLAVVDYALRR--RFSFID 354 (459)
T ss_pred ecCccccchhhccHHHHh--hhheEE
Confidence 999999 89999999 997643
No 98
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=1.3e-07 Score=84.85 Aligned_cols=107 Identities=22% Similarity=0.243 Sum_probs=64.7
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
.+..+||||| ||+ ||.+ |..+ |.+.+.+|...+++.+ -...+
T Consensus 49 ~l~h~lf~GP--PG~GKTTL---A~II---------------A~e~~~~~~~~sg~~i----~k~~d------------- 91 (233)
T PF05496_consen 49 ALDHMLFYGP--PGLGKTTL---ARII---------------ANELGVNFKITSGPAI----EKAGD------------- 91 (233)
T ss_dssp ---EEEEESS--TTSSHHHH---HHHH---------------HHHCT--EEEEECCC------SCHH-------------
T ss_pred CcceEEEECC--CccchhHH---HHHH---------------HhccCCCeEeccchhh----hhHHH-------------
Confidence 4677999999 999 9999 9999 8888888877665433 11111
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC--------CC-
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV--------ER- 327 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~--------~~- 327 (358)
+..+ +...+ ...|||||||..+-.. +--.|+..|+.. ..
T Consensus 92 --l~~i---------------l~~l~--~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 92 --LAAI---------------LTNLK--EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp --HHHH---------------HHT----TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS
T ss_pred --HHHH---------------HHhcC--CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccc
Confidence 2222 33333 3469999999998544 223455555532 11
Q ss_pred -------CCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 328 -------LNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 328 -------~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
.....+||||++...|.+.+.- ||-+
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi 172 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGI 172 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCT--TSSE
T ss_pred cceeeccCCCceEeeeeccccccchhHHh--hcce
Confidence 1347899999999999998887 8865
No 99
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.45 E-value=3.2e-08 Score=82.81 Aligned_cols=54 Identities=33% Similarity=0.430 Sum_probs=35.8
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC----------C-CCC------CEEEEEecCCcc----cc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV----------E-RLN------NILVIGMTNRRD----MI 343 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~----------~-~~~------~v~vi~aTn~~~----~i 343 (358)
.++|+|||||+..-+ .+++.|++-+++- . ... +..+|+|+|.++ .+
T Consensus 65 ~~~il~lDEin~a~~-------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l 131 (139)
T PF07728_consen 65 KGGILVLDEINRAPP-------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKEL 131 (139)
T ss_dssp EEEEEEESSCGG--H-------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTT
T ss_pred ceeEEEECCcccCCH-------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcC
Confidence 779999999998532 2344444444321 1 111 389999999999 99
Q ss_pred chhcCCCCCC
Q psy3629 344 DEALLRPGRL 353 (358)
Q Consensus 344 D~a~lr~GRf 353 (358)
++|++| ||
T Consensus 132 ~~al~~--Rf 139 (139)
T PF07728_consen 132 SPALLD--RF 139 (139)
T ss_dssp CHHHHT--T-
T ss_pred CHHHHh--hC
Confidence 999999 98
No 100
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1e-07 Score=91.35 Aligned_cols=100 Identities=26% Similarity=0.292 Sum_probs=71.8
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...+.+|||| ||+ ||++ |+.+ +...+..|..+++... |.
T Consensus 47 ~l~SmIl~GP--PG~GKTTl---A~li---------------A~~~~~~f~~~sAv~~-----gv--------------- 86 (436)
T COG2256 47 HLHSMILWGP--PGTGKTTL---ARLI---------------AGTTNAAFEALSAVTS-----GV--------------- 86 (436)
T ss_pred CCceeEEECC--CCCCHHHH---HHHH---------------HHhhCCceEEeccccc-----cH---------------
Confidence 3677899999 999 9999 9999 8888888888764332 11
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCC----ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSG----LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNIL 332 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~----p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~ 332 (358)
|-++++|+.|++.. -.|||+|||-.+-... + -.||-.|. .+.|+
T Consensus 87 ---------------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q---------Q----D~lLp~vE----~G~ii 134 (436)
T COG2256 87 ---------------KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ---------Q----DALLPHVE----NGTII 134 (436)
T ss_pred ---------------HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh---------h----hhhhhhhc----CCeEE
Confidence 22244488886533 4799999999985441 1 24566555 34688
Q ss_pred EEEec--CCccccchhcCC
Q psy3629 333 VIGMT--NRRDMIDEALLR 349 (358)
Q Consensus 333 vi~aT--n~~~~iD~a~lr 349 (358)
+|||| |---.|-+|++.
T Consensus 135 lIGATTENPsF~ln~ALlS 153 (436)
T COG2256 135 LIGATTENPSFELNPALLS 153 (436)
T ss_pred EEeccCCCCCeeecHHHhh
Confidence 88887 667788999986
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.40 E-value=2.2e-07 Score=89.29 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=65.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
++..++|+|| ||+ ||.+ |+.+ +...+..+....++... . ...
T Consensus 50 ~~~~~ll~Gp--pG~GKT~l---a~~i---------------a~~l~~~~~~~~~~~~~-----~-~~~----------- 92 (328)
T PRK00080 50 ALDHVLLYGP--PGLGKTTL---ANII---------------ANEMGVNIRITSGPALE-----K-PGD----------- 92 (328)
T ss_pred CCCcEEEECC--CCccHHHH---HHHH---------------HHHhCCCeEEEeccccc-----C-hHH-----------
Confidence 4567999999 999 9999 8888 55555444333322210 0 001
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHc------cCC-CC---
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK------MDG-VE--- 326 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~------ld~-~~--- 326 (358)
+..+ +... ..++||||||||.+... .... +..++.. ++. ..
T Consensus 93 --l~~~---------------l~~l--~~~~vl~IDEi~~l~~~---------~~e~-l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 93 --LAAI---------------LTNL--EEGDVLFIDEIHRLSPV---------VEEI-LYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred --HHHH---------------HHhc--ccCCEEEEecHhhcchH---------HHHH-HHHHHHhcceeeeeccCccccc
Confidence 2222 3333 34689999999998532 1122 2222221 111 00
Q ss_pred ---CCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 327 ---RLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 327 ---~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
...++.+|+|||++..+++++.. ||..
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~ 173 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGI 173 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCe
Confidence 11247899999999999999877 8764
No 102
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.37 E-value=3.7e-07 Score=86.66 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=37.4
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC----------------CCCCEEEEEecCCccccchhcC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE----------------RLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~----------------~~~~v~vi~aTn~~~~iD~a~l 348 (358)
.+.||||||+|.+.+.. . ..|++.|++.. ....+.+|++||++..+++++.
T Consensus 81 ~~~vl~iDEi~~l~~~~---------~----e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAV---------E----ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred cCCEEEEehHhhhCHHH---------H----HHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHH
Confidence 46799999999985431 1 12232322111 1124789999999999999988
Q ss_pred CCCCCcc
Q psy3629 349 RPGRLEV 355 (358)
Q Consensus 349 r~GRfd~ 355 (358)
. ||.+
T Consensus 148 s--R~~~ 152 (305)
T TIGR00635 148 D--RFGI 152 (305)
T ss_pred h--hcce
Confidence 7 8854
No 103
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=1.2e-06 Score=72.34 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=41.3
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc--ccchhcCCCCCCcc
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--MIDEALLRPGRLEV 355 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~iD~a~lr~GRfd~ 355 (358)
+..+....+.+|++||++.+... ....+...+...........++.+|++||.+. .+++.+.. ||+.
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~ 145 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRG---------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDI 145 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHH---------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhcc
Confidence 34455667899999999997221 11222322222222211134788999999888 67777777 8874
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.27 E-value=1.2e-06 Score=71.53 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=47.4
Q ss_pred CCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHH--HHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 267 KNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQ--LLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~--lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
....+.....+++.|+...|.+||+||++.+...... ..... ............+..+|+++|......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 130 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE---------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH---------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCc
Confidence 3455566777799999988999999999998766211 11100 000111112223578999998734444
Q ss_pred hhcCCCCCCccc
Q psy3629 345 EALLRPGRLEVS 356 (358)
Q Consensus 345 ~a~lr~GRfd~~ 356 (358)
+..+++ |+|..
T Consensus 131 ~~~~~~-~~~~~ 141 (148)
T smart00382 131 PALLRR-RFDRR 141 (148)
T ss_pred hhhhhh-ccceE
Confidence 455554 77654
No 105
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.1e-06 Score=85.61 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=41.4
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.....|+||||+|.+-. ...|.||.-|+... .++++|.+||.++.|.++++.
T Consensus 119 ~g~~KV~IIDEah~Ls~-------------~A~NALLKtLEEPp--~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTD-------------QSFNALLKTLEEPP--AHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cCCCEEEEEechhhcCH-------------HHHHHHHHHhhcCC--CceEEEeecCChhhccHHHHh
Confidence 34567999999999832 24688888887543 478999999999999999987
No 106
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.24 E-value=3.6e-07 Score=79.55 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=36.0
Q ss_pred EEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC---------CCCCEEEEEecCCccc
Q psy3629 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------RLNNILVIGMTNRRDM 342 (358)
Q Consensus 288 iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~~ 342 (358)
||||||||.+.+.- .+..+-.-..|.+.||+-||+-. ..+++++|+|+|--..
T Consensus 71 VVllDEidKa~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 71 VVLLDEIDKAHPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp EEEEETGGGCSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred hhhhHHHhhccccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99999999998861 12222123467788888887421 1257999999986544
No 107
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.22 E-value=1.2e-06 Score=84.29 Aligned_cols=121 Identities=24% Similarity=0.184 Sum_probs=73.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc--cccccccHHHHHHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK--RGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~s~~~~~~~~~~~~~ 255 (358)
...+||.|| ||+ ||.+ |+.+ +...+.+|+.+.+.+.. +..+|.........+ ....
T Consensus 43 ~~~vll~G~--PG~gKT~l---a~~l---------------A~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~-~~~~ 101 (329)
T COG0714 43 GGHVLLEGP--PGVGKTLL---ARAL---------------ARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLE-PGEF 101 (329)
T ss_pred CCCEEEECC--CCccHHHH---HHHH---------------HHHhCCCeEEEecCCCCCHHHhcCchhHhhhhcc-CCeE
Confidence 455899999 999 9999 8888 66666777776665543 223344333200000 0000
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC----------C
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG----------V 325 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~----------~ 325 (358)
...=..+ |...+ +|+|+|||+..-+. +.|.||..|+. +
T Consensus 102 ~~~~gpl---------------~~~~~----~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~~ 149 (329)
T COG0714 102 RFVPGPL---------------FAAVR----VILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTTI 149 (329)
T ss_pred EEecCCc---------------ccccc----eEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCCc
Confidence 0000011 33333 69999999986433 45666666664 2
Q ss_pred CCCCCEEEEEecC-----CccccchhcCCCCCCc
Q psy3629 326 ERLNNILVIGMTN-----RRDMIDEALLRPGRLE 354 (358)
Q Consensus 326 ~~~~~v~vi~aTn-----~~~~iD~a~lr~GRfd 354 (358)
.-....+||+|+| .-.-|.+|+++ ||-
T Consensus 150 ~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~ 181 (329)
T COG0714 150 RLPPPFIVIATQNPGEYEGTYPLPEALLD--RFL 181 (329)
T ss_pred CCCCCCEEEEccCccccCCCcCCCHHHHh--hEE
Confidence 2234688888889 66778999999 993
No 108
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.20 E-value=6.3e-06 Score=80.13 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=78.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+..++++|| ||+ ||.+ ++.+..++.+..+ .....+.++.+++.... +.......+++...-..
T Consensus 40 ~~~i~I~G~--~GtGKT~l---~~~~~~~l~~~~~------~~~~~~~~v~in~~~~~----~~~~~~~~i~~~l~~~~- 103 (365)
T TIGR02928 40 PSNVFIYGK--TGTGKTAV---TKYVMKELEEAAE------DRDVRVVTVYVNCQILD----TLYQVLVELANQLRGSG- 103 (365)
T ss_pred CCcEEEECC--CCCCHHHH---HHHHHHHHHHHhh------ccCCceEEEEEECCCCC----CHHHHHHHHHHHHhhcC-
Confidence 456899999 999 9999 7766443321110 01111445555554432 11222222222210000
Q ss_pred cccccccCCCC-chhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHcc--CCCCCCCCEEE
Q psy3629 258 DVKPFFFNPKN-TSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKM--DGVERLNNILV 333 (358)
Q Consensus 258 ~~~~~~~~~~~-~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~l--d~~~~~~~v~v 333 (358)
.. .+..+ ..+.....+|+... ...|.||+|||+|.+.+. .+.++.+|+... .... ..+|.+
T Consensus 104 -~~---~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l~~~~~~~~~~-~~~v~l 168 (365)
T TIGR02928 104 -EE---VPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQLSRARSNGDLD-NAKVGV 168 (365)
T ss_pred -CC---CCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhHhccccccCCC-CCeEEE
Confidence 00 00111 22344555666554 456789999999999722 123567777653 3332 247999
Q ss_pred EEecCCcc---ccchhcCCCCCCc
Q psy3629 334 IGMTNRRD---MIDEALLRPGRLE 354 (358)
Q Consensus 334 i~aTn~~~---~iD~a~lr~GRfd 354 (358)
|++||.++ .+++.+.+ ||.
T Consensus 169 I~i~n~~~~~~~l~~~~~s--~~~ 190 (365)
T TIGR02928 169 IGISNDLKFRENLDPRVKS--SLC 190 (365)
T ss_pred EEEECCcchHhhcCHHHhc--cCC
Confidence 99999997 47777776 664
No 109
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.09 E-value=2.7e-06 Score=84.40 Aligned_cols=102 Identities=25% Similarity=0.314 Sum_probs=64.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...++|+|| ||+ ||.+ |+.+ +...+..|+.+.+... |. ..
T Consensus 36 ~~~ilL~Gp--pGtGKTtL---A~~i---------------a~~~~~~~~~l~a~~~-----~~--~~------------ 76 (413)
T PRK13342 36 LSSMILWGP--PGTGKTTL---ARII---------------AGATDAPFEALSAVTS-----GV--KD------------ 76 (413)
T ss_pred CceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEecccc-----cH--HH------------
Confidence 447899999 999 9999 9998 5555555665543321 11 11
Q ss_pred cccccccCCCCchhHHHHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEE
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILV 333 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v 333 (358)
++.+ ++.++ .....||||||+|.+... ..+.||..|+. ..+++
T Consensus 77 -ir~i---------------i~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~~iil 123 (413)
T PRK13342 77 -LREV---------------IEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----GTITL 123 (413)
T ss_pred -HHHH---------------HHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----CcEEE
Confidence 2222 33332 346689999999987432 23455665553 35667
Q ss_pred EEec--CCccccchhcCCCCCCc
Q psy3629 334 IGMT--NRRDMIDEALLRPGRLE 354 (358)
Q Consensus 334 i~aT--n~~~~iD~a~lr~GRfd 354 (358)
|++| |....+++++++ |+.
T Consensus 124 I~att~n~~~~l~~aL~S--R~~ 144 (413)
T PRK13342 124 IGATTENPSFEVNPALLS--RAQ 144 (413)
T ss_pred EEeCCCChhhhccHHHhc--cce
Confidence 7665 334589999998 763
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=3e-06 Score=83.21 Aligned_cols=61 Identities=8% Similarity=0.166 Sum_probs=41.7
Q ss_pred HHHHhhcCCC----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 274 CTIILEAGPN----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 274 ~~~~f~~a~~----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
|+.+++.+.. ....|+||||+|.+-.. ..|.||+.|+.... ++++|.+|++|+.|.|++++
T Consensus 102 iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LEep~~--~~~fIL~a~~~~~llpTIrS 166 (394)
T PRK07940 102 VRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVEEPPP--RTVWLLCAPSPEDVLPTIRS 166 (394)
T ss_pred HHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhhcCCC--CCeEEEEECChHHChHHHHh
Confidence 3444655543 44569999999999433 24778888886543 44555555559999999987
No 111
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=1.3e-05 Score=80.60 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=39.8
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
...|||+||+|.+... ..+.||..|+...+ .+++|++||.|+.|++++.. |+-
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p~~--~vv~Ilattn~~kl~~~L~S--R~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEPPS--HVVFVLATTNLEKVPPTIIS--RCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhCCC--cEEEEEEeCChHhhhHHHhc--CcE
Confidence 4569999999998422 35677888876543 67778888889999999987 553
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.00 E-value=4.3e-06 Score=79.77 Aligned_cols=56 Identities=30% Similarity=0.294 Sum_probs=37.9
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
..+.||||||+|.+... .....+ .+.|+... .++.+|+|||.++.+++++.+ ||..
T Consensus 99 ~~~~vliiDe~d~l~~~---------~~~~~L---~~~le~~~--~~~~~Ilt~n~~~~l~~~l~s--R~~~ 154 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLA---------DAQRHL---RSFMEAYS--KNCSFIITANNKNGIIEPLRS--RCRV 154 (316)
T ss_pred CCCeEEEEECcccccCH---------HHHHHH---HHHHHhcC--CCceEEEEcCChhhchHHHHh--hceE
Confidence 35789999999987221 112233 33344433 356788899999999999988 7754
No 113
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.98 E-value=6e-06 Score=78.57 Aligned_cols=124 Identities=11% Similarity=0.038 Sum_probs=75.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccc--cccccHHHHHHHhhhc--
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRG--FIGFSLLQRKWAELSL-- 253 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~~~~~~~~~-- 253 (358)
.+.+||+|| ||| ||.+ ++.+ +...+.+++.+...+.... ++|...... +..+
T Consensus 64 ~~~ilL~G~--pGtGKTtl---a~~l---------------A~~l~~~~~rV~~~~~l~~~DliG~~~~~l---~~g~~~ 120 (327)
T TIGR01650 64 DRRVMVQGY--HGTGKSTH---IEQI---------------AARLNWPCVRVNLDSHVSRIDLVGKDAIVL---KDGKQI 120 (327)
T ss_pred CCcEEEEeC--CCChHHHH---HHHH---------------HHHHCCCeEEEEecCCCChhhcCCCceeec---cCCcce
Confidence 356999999 999 9999 9999 7888888888776666544 566542210 0000
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHc-----cCC----
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK-----MDG---- 324 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~-----ld~---- 324 (358)
..+ .... +-.|. ..++++++||||..-+. ....++.+|.. +++
T Consensus 121 ~~f--~~Gp---------------L~~A~-~~g~illlDEin~a~p~----------~~~~L~~lLE~~~~l~i~~~~~~ 172 (327)
T TIGR01650 121 TEF--RDGI---------------LPWAL-QHNVALCFDEYDAGRPD----------VMFVIQRVLEAGGKLTLLDQNRV 172 (327)
T ss_pred eEE--ecCc---------------chhHH-hCCeEEEechhhccCHH----------HHHHHHHHhccCCeEEECCCceE
Confidence 000 0111 33343 35689999999986222 22345556552 222
Q ss_pred CCCCCCEEEEEecCCccc------------cchhcCCCCCCcc
Q psy3629 325 VERLNNILVIGMTNRRDM------------IDEALLRPGRLEV 355 (358)
Q Consensus 325 ~~~~~~v~vi~aTn~~~~------------iD~a~lr~GRfd~ 355 (358)
+.......||||+|..+. +++|++- ||-+
T Consensus 173 i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i 213 (327)
T TIGR01650 173 IRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSI 213 (327)
T ss_pred ecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heee
Confidence 123346789999999774 4567777 7753
No 114
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.98 E-value=1.2e-05 Score=79.12 Aligned_cols=135 Identities=15% Similarity=0.165 Sum_probs=74.6
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+..++++|| ||+ ||.+ ++.+..++-+ ...++.++.+++....+. ......+++.....
T Consensus 55 ~~~~lI~G~--~GtGKT~l---~~~v~~~l~~----------~~~~~~~v~in~~~~~~~----~~~~~~i~~~l~~~-- 113 (394)
T PRK00411 55 PLNVLIYGP--PGTGKTTT---VKKVFEELEE----------IAVKVVYVYINCQIDRTR----YAIFSEIARQLFGH-- 113 (394)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHHHHHHH----------hcCCcEEEEEECCcCCCH----HHHHHHHHHHhcCC--
Confidence 456899999 999 9999 7666433211 112345556655444211 11111112211000
Q ss_pred cccccccCCCC-chhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 258 DVKPFFFNPKN-TSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 258 ~~~~~~~~~~~-~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
. .+..+ ..+.....+++..+. ..+.||+|||+|.+...+ ...++..|+..++...+ .++.+|+
T Consensus 114 ---~--~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~~~-~~v~vI~ 178 (394)
T PRK00411 114 ---P--PPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEYPG-ARIGVIG 178 (394)
T ss_pred ---C--CCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhccCC-CeEEEEE
Confidence 0 00111 234455555555443 567999999999998221 12357778777776543 3788999
Q ss_pred ecCCcc---ccchhcCC
Q psy3629 336 MTNRRD---MIDEALLR 349 (358)
Q Consensus 336 aTn~~~---~iD~a~lr 349 (358)
++|.++ .+|+.+..
T Consensus 179 i~~~~~~~~~l~~~~~s 195 (394)
T PRK00411 179 ISSDLTFLYILDPRVKS 195 (394)
T ss_pred EECCcchhhhcCHHHHh
Confidence 998875 45565543
No 115
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=1.5e-05 Score=81.83 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=41.0
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.....|+||||+|.+-. ...|.||+.|+... .++++|.+||.++.|.+.++.
T Consensus 122 ~gr~KViIIDEah~Ls~-------------~AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN-------------HAFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cCCceEEEEEChHhcCH-------------HHHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH
Confidence 45568999999999832 24688999888644 378899999999999998873
No 116
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.94 E-value=5.8e-06 Score=76.98 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=25.8
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSP 232 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (358)
..++|+|| ||| ||.+ |+++ +...+.+++.+.+.
T Consensus 22 ~~vLL~G~--~GtGKT~l---A~~l---------------a~~lg~~~~~i~~~ 55 (262)
T TIGR02640 22 YPVHLRGP--AGTGKTTL---AMHV---------------ARKRDRPVMLINGD 55 (262)
T ss_pred CeEEEEcC--CCCCHHHH---HHHH---------------HHHhCCCEEEEeCC
Confidence 35899999 999 9999 9988 65566777766544
No 117
>KOG1051|consensus
Probab=97.89 E-value=2.7e-05 Score=82.55 Aligned_cols=113 Identities=17% Similarity=0.119 Sum_probs=74.2
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+....||.|| .|+ ||.+ |+++.+.++.+.+.+....-.+..- .-..+ +.-.+|+|.++..
T Consensus 589 ~~~awflflGp--dgvGKt~l---AkaLA~~~Fgse~~~IriDmse~~e-vskli--gsp~gyvG~e~gg---------- 650 (898)
T KOG1051|consen 589 NPDAWFLFLGP--DGVGKTEL---AKALAEYVFGSEENFIRLDMSEFQE-VSKLI--GSPPGYVGKEEGG---------- 650 (898)
T ss_pred CCCeEEEEECC--CchhHHHH---HHHHHHHHcCCccceEEechhhhhh-hhhcc--CCCcccccchhHH----------
Confidence 36778999999 999 9999 9999887776665533322111100 00111 1123478887765
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC---------
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE--------- 326 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------- 326 (358)
.+ .+..|....|||+|||||..= -.+.|.|++.||.-.
T Consensus 651 -----~L---------------teavrrrP~sVVLfdeIEkAh-------------~~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 651 -----QL---------------TEAVKRRPYSVVLFEEIEKAH-------------PDVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred -----HH---------------HHHHhcCCceEEEEechhhcC-------------HHHHHHHHHHHhcCccccCCCcEe
Confidence 33 777888888999999999841 246676777766321
Q ss_pred CCCCEEEEEecCCc
Q psy3629 327 RLNNILVIGMTNRR 340 (358)
Q Consensus 327 ~~~~v~vi~aTn~~ 340 (358)
..+++|||+|.|.-
T Consensus 698 d~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 698 DFKNAIFIMTSNVG 711 (898)
T ss_pred eccceEEEEecccc
Confidence 23679999998863
No 118
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=3.2e-05 Score=79.54 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=46.7
Q ss_pred HHHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 273 LCTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 273 ~~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
.++++.+.+. ....-|++|||+|.+-. ...|.||..|+.... .+++|.+|+.|+.|.+.++
T Consensus 103 ~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~naLLKtLEepp~--~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 103 EIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAFNALLKTLEEPPA--HVIFILATTEPHKIPATIL 167 (559)
T ss_pred HHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHhcCCCC--CeEEEEEeCChhhCcHHHH
Confidence 3444455444 34457999999998732 246788888886543 6777777888999999887
Q ss_pred -CCCCCcc
Q psy3629 349 -RPGRLEV 355 (358)
Q Consensus 349 -r~GRfd~ 355 (358)
|-.||++
T Consensus 168 SRc~~~~f 175 (559)
T PRK05563 168 SRCQRFDF 175 (559)
T ss_pred hHheEEec
Confidence 4445554
No 119
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.88 E-value=3.7e-05 Score=80.91 Aligned_cols=134 Identities=12% Similarity=0.016 Sum_probs=73.6
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCC-CccccccccCcccccccccccHHHHHHHhhhccccccc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPG-RHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDV 259 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 259 (358)
++++|+ ||| ||.. ++.+...+-+..+ ... ..+.++.+++..+.. .......++...
T Consensus 784 LYIyG~--PGTGKTAT---VK~VLrELqeeae------qk~lp~f~vVYINCm~Lst----p~sIYqvI~qqL------- 841 (1164)
T PTZ00112 784 LYISGM--PGTGKTAT---VYSVIQLLQHKTK------QKLLPSFNVFEINGMNVVH----PNAAYQVLYKQL------- 841 (1164)
T ss_pred EEEECC--CCCCHHHH---HHHHHHHHHHHHh------hccCCCceEEEEeCCccCC----HHHHHHHHHHHH-------
Confidence 469999 999 9998 6655333321110 111 124456666544321 111122222111
Q ss_pred cccccCCCCchhHHHHHHhhcCC--CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGP--NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~--~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
..-.-...+.+...+..+|.... ...++||+|||||.|.... +.++-.|+.... . ...+|+|||+|
T Consensus 842 ~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDVLYnLFR~~~-~-s~SKLiLIGIS 909 (1164)
T PTZ00112 842 FNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKVLFTLFDWPT-K-INSKLVLIAIS 909 (1164)
T ss_pred cCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHHHHHHHHHhh-c-cCCeEEEEEec
Confidence 00001111234566777888753 3456799999999997541 244555555433 2 23479999999
Q ss_pred CC---ccccchhcCC
Q psy3629 338 NR---RDMIDEALLR 349 (358)
Q Consensus 338 n~---~~~iD~a~lr 349 (358)
|. |+.||+.+..
T Consensus 910 NdlDLperLdPRLRS 924 (1164)
T PTZ00112 910 NTMDLPERLIPRCRS 924 (1164)
T ss_pred Cchhcchhhhhhhhh
Confidence 86 6677777765
No 120
>KOG2028|consensus
Probab=97.86 E-value=8.2e-06 Score=77.52 Aligned_cols=102 Identities=27% Similarity=0.380 Sum_probs=63.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
..+++|+|| ||| ||.+ |+.+... ++...+-|+.+.+... +++.
T Consensus 162 ipSmIlWGp--pG~GKTtl---Arlia~t------------sk~~SyrfvelSAt~a------------------~t~d- 205 (554)
T KOG2028|consen 162 IPSMILWGP--PGTGKTTL---ARLIAST------------SKKHSYRFVELSATNA------------------KTND- 205 (554)
T ss_pred CCceEEecC--CCCchHHH---HHHHHhh------------cCCCceEEEEEecccc------------------chHH-
Confidence 556899999 999 9999 9888211 2222333555432222 1111
Q ss_pred cccccccCCCCchhHHHHHHhhcCCC-----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEE
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPN-----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNIL 332 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~-----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~ 332 (358)
++++ |+.|++ ....|||||||-.+-... ++ .||-. ++. +.|+
T Consensus 206 -vR~i---------------fe~aq~~~~l~krkTilFiDEiHRFNksQ---------QD----~fLP~---VE~-G~I~ 252 (554)
T KOG2028|consen 206 -VRDI---------------FEQAQNEKSLTKRKTILFIDEIHRFNKSQ---------QD----TFLPH---VEN-GDIT 252 (554)
T ss_pred -HHHH---------------HHHHHHHHhhhcceeEEEeHHhhhhhhhh---------hh----cccce---ecc-CceE
Confidence 5555 777776 456899999999874441 11 23332 332 3688
Q ss_pred EEEec--CCccccchhcCC
Q psy3629 333 VIGMT--NRRDMIDEALLR 349 (358)
Q Consensus 333 vi~aT--n~~~~iD~a~lr 349 (358)
+|||| |---.|..|+|.
T Consensus 253 lIGATTENPSFqln~aLlS 271 (554)
T KOG2028|consen 253 LIGATTENPSFQLNAALLS 271 (554)
T ss_pred EEecccCCCccchhHHHHh
Confidence 88877 555677888876
No 121
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=3.6e-05 Score=80.25 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=39.4
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
....|+||||+|.|-. ...|.||..|+.... ++.+|.+||.++.|-+.|+.
T Consensus 118 gr~KVIIIDEah~LT~-------------~A~NALLKtLEEPP~--~v~FILaTtd~~KIp~TIrS 168 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN-------------HAFNAMLKTLEEPPP--HVKFILATTDPQKIPVTVLS 168 (830)
T ss_pred CCceEEEEeChhhCCH-------------HHHHHHHHHHHhcCC--CeEEEEEECChhhccchhhh
Confidence 4557999999999832 236788888885543 78888899999999888874
No 122
>PRK04195 replication factor C large subunit; Provisional
Probab=97.83 E-value=1.1e-05 Score=81.58 Aligned_cols=110 Identities=17% Similarity=0.108 Sum_probs=65.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...+||+|| ||+ ||.+ |+++ +...++.++.+++++..+.- ....+.... .
T Consensus 39 ~~~lLL~Gp--pG~GKTtl---a~al---------------a~el~~~~ielnasd~r~~~-----~i~~~i~~~----~ 89 (482)
T PRK04195 39 KKALLLYGP--PGVGKTSL---AHAL---------------ANDYGWEVIELNASDQRTAD-----VIERVAGEA----A 89 (482)
T ss_pred CCeEEEECC--CCCCHHHH---HHHH---------------HHHcCCCEEEEcccccccHH-----HHHHHHHHh----h
Confidence 677999999 999 9999 9999 66667777777666542110 000000000 0
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
....+ |. ..+.||+|||+|.+.+.. ....++.|+..++.. +..+|++|
T Consensus 90 ~~~sl---------------~~----~~~kvIiIDEaD~L~~~~---------d~~~~~aL~~~l~~~----~~~iIli~ 137 (482)
T PRK04195 90 TSGSL---------------FG----ARRKLILLDEVDGIHGNE---------DRGGARAILELIKKA----KQPIILTA 137 (482)
T ss_pred ccCcc---------------cC----CCCeEEEEecCccccccc---------chhHHHHHHHHHHcC----CCCEEEec
Confidence 01111 21 356899999999986521 012245555555522 34577788
Q ss_pred CCccccchhcCC
Q psy3629 338 NRRDMIDEALLR 349 (358)
Q Consensus 338 n~~~~iD~a~lr 349 (358)
|.+..+++.-||
T Consensus 138 n~~~~~~~k~Lr 149 (482)
T PRK04195 138 NDPYDPSLRELR 149 (482)
T ss_pred cCccccchhhHh
Confidence 999988873344
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.83 E-value=2.2e-05 Score=72.49 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=68.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
.+-.+||+|| ||. ||.| |.-+ |.+.+..+....+|.+- -.+.
T Consensus 51 ~lDHvLl~GP--PGlGKTTL---A~II---------------A~Emgvn~k~tsGp~le----K~gD------------- 93 (332)
T COG2255 51 ALDHVLLFGP--PGLGKTTL---AHII---------------ANELGVNLKITSGPALE----KPGD------------- 93 (332)
T ss_pred CcCeEEeeCC--CCCcHHHH---HHHH---------------HHHhcCCeEeccccccc----Chhh-------------
Confidence 4677999999 999 9999 9999 88888777666555541 1111
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC--------CC-
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV--------ER- 327 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~--------~~- 327 (358)
+..+ +.... .-.|+|||||-++.+. +..- |-..|+.+ ..
T Consensus 94 --laai---------------Lt~Le--~~DVLFIDEIHrl~~~---------vEE~----LYpaMEDf~lDI~IG~gp~ 141 (332)
T COG2255 94 --LAAI---------------LTNLE--EGDVLFIDEIHRLSPA---------VEEV----LYPAMEDFRLDIIIGKGPA 141 (332)
T ss_pred --HHHH---------------HhcCC--cCCeEEEehhhhcChh---------HHHH----hhhhhhheeEEEEEccCCc
Confidence 2222 22222 2269999999998654 2222 22333322 11
Q ss_pred -------CCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 328 -------LNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 328 -------~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
.....+||||.|..+|-.-+-- ||-+
T Consensus 142 Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi 174 (332)
T COG2255 142 ARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGI 174 (332)
T ss_pred cceEeccCCCeeEeeeccccccccchhHH--hcCC
Confidence 1347899999999999877665 7754
No 124
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=4e-05 Score=77.61 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=47.5
Q ss_pred HHHHHHhhcCCC----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhc
Q psy3629 272 FLCTIILEAGPN----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347 (358)
Q Consensus 272 ~~~~~~f~~a~~----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~ 347 (358)
..++.+.+.+.. ....|++|||+|.+-. ...+.||..|+... ..+++|.+|+.++.|.+++
T Consensus 111 d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------~a~naLLk~LEepp--~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 111 DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-------------GAFNALLKTLEEPP--PHIIFIFATTEVQKIPATI 175 (507)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEChhhcCH-------------HHHHHHHHHHhhcC--CCEEEEEEeCChHHhhHHH
Confidence 345555655543 3456999999998732 23677888887543 3677778888999999988
Q ss_pred C-CCCCCccc
Q psy3629 348 L-RPGRLEVS 356 (358)
Q Consensus 348 l-r~GRfd~~ 356 (358)
+ |-.||+++
T Consensus 176 ~SRc~~~ef~ 185 (507)
T PRK06645 176 ISRCQRYDLR 185 (507)
T ss_pred HhcceEEEcc
Confidence 7 44456654
No 125
>PHA02244 ATPase-like protein
Probab=97.78 E-value=2e-05 Score=76.11 Aligned_cols=59 Identities=25% Similarity=0.263 Sum_probs=38.2
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHH-----ccCCC-CCCCCEEEEEecCCc-----------cccchhc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLS-----KMDGV-ERLNNILVIGMTNRR-----------DMIDEAL 347 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~-----~ld~~-~~~~~v~vi~aTn~~-----------~~iD~a~ 347 (358)
...+|||||+|.+-+. + ...++.+|. .+++. ....++-+|+|+|.+ ..+++|+
T Consensus 180 ~GgvLiLDEId~a~p~---------v-q~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~Al 249 (383)
T PHA02244 180 KGGLFFIDEIDASIPE---------A-LIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGAT 249 (383)
T ss_pred cCCEEEEeCcCcCCHH---------H-HHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHH
Confidence 4579999999987443 1 123333332 23332 123478999999974 6789999
Q ss_pred CCCCCCcc
Q psy3629 348 LRPGRLEV 355 (358)
Q Consensus 348 lr~GRfd~ 355 (358)
+. ||-.
T Consensus 250 lD--RFv~ 255 (383)
T PHA02244 250 LD--RFAP 255 (383)
T ss_pred Hh--hcEE
Confidence 98 8854
No 126
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.78 E-value=6.6e-05 Score=66.12 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=38.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
..+.||+|||+|.+-.. ..+.||..|+.... ++++|.+||.++.|++++..
T Consensus 95 ~~~kviiide~~~l~~~-------------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s 145 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA-------------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS 145 (188)
T ss_pred CCeEEEEEechhhhCHH-------------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh
Confidence 55679999999998432 35678888886443 56677778888999999987
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=4.2e-05 Score=71.62 Aligned_cols=105 Identities=19% Similarity=0.225 Sum_probs=70.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~ 255 (358)
....+|+-|| .|+ ||.| |..+ |.-.+.||....+..+. .+|+|+.-.+.
T Consensus 96 ~KSNILLiGP--TGsGKTlL---AqTL---------------Ak~LnVPFaiADATtLTEAGYVGEDVENi--------- 146 (408)
T COG1219 96 SKSNILLIGP--TGSGKTLL---AQTL---------------AKILNVPFAIADATTLTEAGYVGEDVENI--------- 146 (408)
T ss_pred eeccEEEECC--CCCcHHHH---HHHH---------------HHHhCCCeeeccccchhhccccchhHHHH---------
Confidence 3567999999 999 9999 9999 88889999998888887 89999965441
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh-hHHHHHHHHccCCC
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH-DTVVNQLLSKMDGV 325 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~-~~~~~~lL~~ld~~ 325 (358)
+-++.-.- =|..+|+.. -||||||||.|+.+-...+-...++ .-|-..||.-|.|-
T Consensus 147 ---llkLlqaa----------dydV~rAer-GIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 147 ---LLKLLQAA----------DYDVERAER-GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ---HHHHHHHc----------ccCHHHHhC-CeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 11110000 033344444 6999999999987632211111122 33556688888874
No 128
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=6.4e-05 Score=77.40 Aligned_cols=52 Identities=13% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.....||||||+|.+-. ...|.||..|+.... ++++|++||.++.|.+.++.
T Consensus 117 ~g~~kVIIIDEad~Lt~-------------~a~naLLk~LEEP~~--~~ifILaTt~~~kll~TI~S 168 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTR-------------EAFNALLKTLEEPPA--RVTFVLATTEPHKFPVTIVS 168 (624)
T ss_pred cCCceEEEEEChHhCCH-------------HHHHHHHHHhhccCC--CEEEEEecCChhhhhHHHHh
Confidence 34557999999999832 236888888886443 68888888899988887764
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=9e-05 Score=76.54 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC-CCCCCccc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL-RPGRLEVS 356 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l-r~GRfd~~ 356 (358)
..-|++|||+|.+-. ...|.||..|+.... .+++|.+||.|+.|-+.++ |--+|+++
T Consensus 119 ~~KVvIIdev~~Lt~-------------~a~naLLk~LEepp~--~~~fIl~t~~~~kl~~tI~SRc~~~~f~ 176 (576)
T PRK14965 119 RYKIFIIDEVHMLST-------------NAFNALLKTLEEPPP--HVKFIFATTEPHKVPITILSRCQRFDFR 176 (576)
T ss_pred CceEEEEEChhhCCH-------------HHHHHHHHHHHcCCC--CeEEEEEeCChhhhhHHHHHhhhhhhcC
Confidence 346999999998732 235788888886543 6788888899999998877 55556554
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=9.5e-05 Score=75.02 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=39.0
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
..+.||+|||+|.+- ...++.||..|+.... ++++|.+||.++.|.+++..
T Consensus 115 ~~~kVVIIDEad~ls-------------~~a~naLLk~LEep~~--~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 115 GGRKVYILDEAHMMS-------------KSAFNALLKTLEEPPE--HVIFILATTEPEKMPPTILS 165 (504)
T ss_pred CCCeEEEEECccccC-------------HHHHHHHHHHHHhCCC--CEEEEEEcCChhhCChHHhc
Confidence 456799999998652 2347788888886543 67778888999999998875
No 131
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00013 Score=71.19 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=36.5
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...|+||||+|.+-. ...|.||..|+.... .+.+|.+||.++.|.+++..
T Consensus 119 ~~kviIIDEa~~l~~-------------~a~naLLk~lEe~~~--~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 119 RFKVYLIDEVHMLSR-------------HSFNALLKTLEEPPQ--HIKFILATTDVEKIPKTILS 168 (363)
T ss_pred CceEEEEEChhhcCH-------------HHHHHHHHHHhcCCC--CeEEEEEcCChHhhhHHHHh
Confidence 446999999998722 235678888776443 67777788889999888764
No 132
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.66 E-value=8.6e-05 Score=71.85 Aligned_cols=53 Identities=23% Similarity=0.394 Sum_probs=39.5
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
..-||+|||+|.+-. ...+.||..++.... ++++|.+||+++.+.+++.. |+.
T Consensus 117 ~~~vviidea~~l~~-------------~~~~~Ll~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSK-------------SAFNALLKTLEEPPE--HVVFILATTEPHKIPATILS--RCQ 169 (355)
T ss_pred CceEEEEeChhhcCH-------------HHHHHHHHHHhCCcc--ceeEEEEeCCHHHHHHHHHh--hee
Confidence 345999999998732 246778888876543 67788888999999888876 553
No 133
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=8.8e-05 Score=72.38 Aligned_cols=51 Identities=22% Similarity=0.333 Sum_probs=36.3
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
..+.|||+||+|.+... ..+.||..|+.... ..++|.+||.+..+.+++.+
T Consensus 107 ~~~kiviIDE~~~l~~~-------------~~~~ll~~le~~~~--~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSA-------------AFNAFLKTLEEPPA--HAIFILATTEKHKIIPTILS 157 (367)
T ss_pred CCcEEEEEeChhhcCHH-------------HHHHHHHHHhCCCC--ceEEEEEeCCcccCCHHHHh
Confidence 34579999999977432 35778777776433 45666677788888888875
No 134
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=0.00011 Score=77.92 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|+||||+|.+- ....|.||..|+...+ .+.+|++||.++.|-+.++.
T Consensus 118 gk~KViIIDEAh~LT-------------~eAqNALLKtLEEPP~--~vrFILaTTe~~kLl~TIlS 168 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-------------RSSFNALLKTLEEPPE--HVKFLLATTDPQKLPVTVLS 168 (944)
T ss_pred CCcEEEEEechHhcC-------------HHHHHHHHHHHhccCC--CeEEEEECCCchhchHHHHH
Confidence 445699999999982 2357889999986544 67777778888888888763
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.00011 Score=73.79 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=39.9
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.....||+|||+|.+-.. ..+.||..|+.... .+++|++||+++.|.+++..
T Consensus 119 ~~~~kvvIIdead~lt~~-------------~~n~LLk~lEep~~--~~~~Il~t~~~~kl~~tI~s 170 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKE-------------AFNSLLKTLEEPPQ--HVKFFLATTEIHKIPGTILS 170 (451)
T ss_pred cCCCEEEEEecHHhhCHH-------------HHHHHHHHhhcCCC--CceEEEEeCChHhcchHHHH
Confidence 356689999999988422 35788888887543 67777788899999988876
No 136
>KOG0745|consensus
Probab=97.63 E-value=0.00014 Score=70.65 Aligned_cols=133 Identities=20% Similarity=0.239 Sum_probs=81.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...+||.|| .|+ ||.| |+.+ |...+.||..-.+..+. .+|+|+.-.-+
T Consensus 226 KSNvLllGP--tGsGKTll---aqTL---------------Ar~ldVPfaIcDcTtLTQAGYVGeDVEsv---------- 275 (564)
T KOG0745|consen 226 KSNVLLLGP--TGSGKTLL---AQTL---------------ARVLDVPFAICDCTTLTQAGYVGEDVESV---------- 275 (564)
T ss_pred cccEEEECC--CCCchhHH---HHHH---------------HHHhCCCeEEecccchhhcccccccHHHH----------
Confidence 567999999 999 9999 8888 88889999988888886 89999853221
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh-hHHHHHHHHccCCC----------
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH-DTVVNQLLSKMDGV---------- 325 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~-~~~~~~lL~~ld~~---------- 325 (358)
|.++...- =|+.+++.+ -||||||+|.|..+-.+-+....++ .-|-..||..+.|-
T Consensus 276 --i~KLl~~A----------~~nVekAQq-GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~ 342 (564)
T KOG0745|consen 276 --IQKLLQEA----------EYNVEKAQQ-GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSR 342 (564)
T ss_pred --HHHHHHHc----------cCCHHHHhc-CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCC
Confidence 11110000 033344444 6999999999985422111111122 23555678888763
Q ss_pred -CCCCCEEEEEecCCcc-------ccchhcCCCCCCccc
Q psy3629 326 -ERLNNILVIGMTNRRD-------MIDEALLRPGRLEVS 356 (358)
Q Consensus 326 -~~~~~v~vi~aTn~~~-------~iD~a~lr~GRfd~~ 356 (358)
..++..+.|-|||-.- .||.-+-| |.|.+
T Consensus 343 ~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r--R~~d~ 379 (564)
T KOG0745|consen 343 RKPRGDTVQIDTTNILFIASGAFVGLDKIISR--RLDDK 379 (564)
T ss_pred CCCCCCeEEEeccceEEEecccccchHHHHHH--hhcch
Confidence 1223456666665433 34555566 66544
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.63 E-value=0.00059 Score=64.38 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHh------c
Q psy3629 8 NNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAAL------T 76 (358)
Q Consensus 8 ~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~------t 76 (358)
++++||++++... .++|+++| ||+.+|+|+.++.+++.+|++.++++.. ....+.....+.+. .
T Consensus 160 ~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~---~~l~~~~~~~L~~~i~~~~~~ 234 (287)
T CHL00181 160 DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQ---YQLTPEAEKALLDYIKKRMEQ 234 (287)
T ss_pred CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhc---CCCChhHHHHHHHHHHHhCCC
Confidence 5688888876422 34699999 9999999999999999999999998753 12222333333332 2
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHH
Q psy3629 77 KNFS-GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFL 124 (358)
Q Consensus 77 ~g~s-gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~ 124 (358)
+.|. +++++++++.|......|........ .+ ......++.+|+.
T Consensus 235 ~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~-~~--~~~l~~~~~~d~~ 280 (287)
T CHL00181 235 PLFANARSVRNALDRARMRQANRIFESGGRV-LT--KADLVTIEAEDIL 280 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcCCCCC-CC--HHHHhCCCHHHHh
Confidence 4556 89999999999988888877654221 11 1123445566654
No 138
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.59 E-value=9.3e-06 Score=79.46 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=66.6
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccc-cHHHHHHHhhhcc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGF-SLLQRKWAELSLH 254 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~-s~~~~~~~~~~~~ 254 (358)
.+.++|++|| ||+ ||.+ |+++ +...+.+|+.+.++.+. .+|+|. .+..
T Consensus 46 ~p~~ILLiGp--pG~GKT~l---AraL---------------A~~l~~~fi~vdat~~~e~g~vG~dvE~i--------- 96 (441)
T TIGR00390 46 TPKNILMIGP--TGVGKTEI---ARRL---------------AKLANAPFIKVEATKFTEVGYVGRDVESM--------- 96 (441)
T ss_pred CCceEEEECC--CCCCHHHH---HHHH---------------HHHhCCeEEEeecceeecCCcccCCHHHH---------
Confidence 4688999999 999 9999 9999 88889999999888775 467773 4444
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHcc
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKM 322 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~l 322 (358)
++.+ |..|... + ++|.+++.|..+. ....+|++++||...
T Consensus 97 ----~r~l---------------~e~A~~~------i-~~d~i~~~r~~a~--~~ae~riv~~Ll~~~ 136 (441)
T TIGR00390 97 ----VRDL---------------TDAAVKL------V-KEEAIEKVRDRAE--ELAEERIVDVLLPPA 136 (441)
T ss_pred ----HHHH---------------HHHHHHH------H-HHHHHhHHHHHHH--HHHHHHHHHHhcCCc
Confidence 4444 8877552 3 5799999984432 336789999998743
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.58 E-value=0.00026 Score=73.70 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=27.9
Q ss_pred hcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhH
Q psy3629 26 LLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNL 69 (358)
Q Consensus 26 l~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l 69 (358)
.+|.|+++..=++.-++..+|.--|+..+..-+.........++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (615)
T TIGR02903 23 RVKAIKYKALGLIKSEKVEEKVLALQKIVYEDPGLDTVPDPREL 66 (615)
T ss_pred eeehHhhhHHHHhcCCcHHHHHHHHHHHHhcCCCCCcCCChhhH
Confidence 45667777777777788888887777776554433333344433
No 140
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.00015 Score=77.46 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=42.6
Q ss_pred HhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
++..-......|+||||+|.|-. .-.|.||+.|+.... .+++|++||.++.|-+.|..
T Consensus 112 ~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS 169 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS 169 (824)
T ss_pred HHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh
Confidence 34444456678999999999832 236788888887654 67778888889988887764
No 141
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.00015 Score=75.21 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|+||||+|.+-. ...|.||..|+...+ .+.+|.+|+.++.|-+.++-
T Consensus 118 g~~KV~IIDEah~Ls~-------------~a~NALLKtLEEPp~--~v~FIL~Tt~~~kLl~TI~S 168 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR-------------HSFNALLKTLEEPPE--HVKFLLATTDPQKLPVTILS 168 (647)
T ss_pred CCCEEEEEechHhCCH-------------HHHHHHHHHHHcCCC--CeEEEEecCCccccchHHHh
Confidence 4557999999999832 246888888886544 67777778888888888763
No 142
>PLN03025 replication factor C subunit; Provisional
Probab=97.55 E-value=0.00012 Score=70.03 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=33.3
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.+.||+|||+|.+-.. . -+.|+..|+.... .+.+|.+||.++.+.+++..
T Consensus 99 ~~kviiiDE~d~lt~~---------a----q~aL~~~lE~~~~--~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 99 RHKIVILDEADSMTSG---------A----QQALRRTMEIYSN--TTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CeEEEEEechhhcCHH---------H----HHHHHHHHhcccC--CceEEEEeCCccccchhHHH
Confidence 4679999999998433 1 2445555553332 34566778888888888775
No 143
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00017 Score=73.28 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
....|+||||+|.+-.. ..|.||..|+.... .+.+|.+||.++.|-+.++.
T Consensus 118 ~~~kV~iIDE~~~ls~~-------------a~naLLk~LEepp~--~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-------------SFNALLKTLEEPPS--HVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred CCcEEEEEEChHhcCHH-------------HHHHHHHHHhccCC--CeEEEEEECChHhchHHHHH
Confidence 44579999999998432 35788888886543 57777777888888877764
No 144
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00015 Score=74.87 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=36.8
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
....|+||||+|.+-.. ..|.||..|+... ..+.+|.+||.+..+.+.++.
T Consensus 117 gk~KV~IIDEVh~LS~~-------------A~NALLKtLEEPP--~~v~FILaTtd~~kIp~TIlS 167 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-------------SFNALLKTLEEPP--EHVKFLFATTDPQKLPITVIS 167 (702)
T ss_pred CCcEEEEEechHhcCHH-------------HHHHHHHHHhcCC--CCcEEEEEECChHhhhHHHHH
Confidence 34579999999987322 3577888887544 366777778888888877763
No 145
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00016 Score=75.19 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHhhcCCC----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 273 LCTIILEAGPN----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 273 ~~~~~f~~a~~----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
.|+++.+.+.. ...-|+||||+|.+-. ...|.||..|+... ..+++|++||.++.|-+.+.
T Consensus 105 ~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LEePp--~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 105 NIRELIERAQFAPVQARWKVYVIDECHMLST-------------AAFNALLKTLEEPP--PRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred HHHHHHHHHhhChhcCCceEEEEECccccCH-------------HHHHHHHHHHhcCC--cCeEEEEEeCChhhhhHHHH
Confidence 45555555543 3446999999998722 34688899999644 36778888888998888876
Q ss_pred -CCCCCcc
Q psy3629 349 -RPGRLEV 355 (358)
Q Consensus 349 -r~GRfd~ 355 (358)
|-.+|++
T Consensus 170 SRc~~~~f 177 (620)
T PRK14948 170 SRCQRFDF 177 (620)
T ss_pred hheeEEEe
Confidence 4444443
No 146
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=0.00017 Score=72.56 Aligned_cols=51 Identities=20% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|++|||+|.+-. ...|.||..|+.... .+.+|.+|+.++.|.+.++.
T Consensus 115 ~~~KVvIIDEah~Ls~-------------~A~NaLLK~LEePp~--~v~fIlatte~~Kl~~tI~S 165 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN-------------SAFNALLKTLEEPAP--HVKFILATTEVKKIPVTIIS 165 (491)
T ss_pred CCceEEEEeChHhCCH-------------HHHHHHHHHHhCCCC--CeEEEEEeCChHHHHHHHHH
Confidence 4557999999988732 246788999887654 67788888888889888763
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00018 Score=75.39 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=56.9
Q ss_pred CCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc--
Q psy3629 265 NPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM-- 342 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~-- 342 (358)
+|.|+-|..+..|.+..+++.+.|+|||||..|++.=+..|+ ......++.-.| .+..+-+||||+.-+.
T Consensus 242 kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaL-------ARGeL~~IGATT~~EYRk 313 (786)
T COG0542 242 KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPAL-------ARGELRCIGATTLDEYRK 313 (786)
T ss_pred cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHH-------hcCCeEEEEeccHHHHHH
Confidence 678899999999999999998999999999999988222221 111222222222 2345778999954332
Q ss_pred ---cchhcCCCCCCccc
Q psy3629 343 ---IDEALLRPGRLEVS 356 (358)
Q Consensus 343 ---iD~a~lr~GRfd~~ 356 (358)
=|+|+-| ||-..
T Consensus 314 ~iEKD~AL~R--RFQ~V 328 (786)
T COG0542 314 YIEKDAALER--RFQKV 328 (786)
T ss_pred HhhhchHHHh--cCcee
Confidence 3999999 99643
No 148
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.00023 Score=73.97 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=41.6
Q ss_pred HHHHHhhcCCC----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 273 LCTIILEAGPN----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 273 ~~~~~f~~a~~----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
.|+.+.+.+.. ....|+||||+|.+- ....|.||..|+...+ .+.+|.+||.+..|.+.++
T Consensus 103 ~IRelle~a~~~P~~gk~KVIIIDEad~Ls-------------~~A~NALLKtLEEPp~--~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 103 NIREVLENAQYAPTAGKYKVYIIDEVHMLS-------------KSAFNAMLKTLEEPPE--HVKFILATTDPHKVPVTVL 167 (709)
T ss_pred HHHHHHHHHHhhhhhCCcEEEEEECccccC-------------HHHHHHHHHHHHhCCC--CcEEEEEeCCccccchHHH
Confidence 34444554321 344799999998762 2346788888886543 6777888888888887776
No 149
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.43 E-value=0.00026 Score=72.61 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.7
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.-|++|||+|.+-.. ..+.||..|+.... .+++|.+|+.++.|.+++++
T Consensus 120 ~KVIIIDEad~Lt~~-------------A~NaLLKtLEEPp~--~tvfIL~Tt~~~KLl~TI~S 168 (605)
T PRK05896 120 YKVYIIDEAHMLSTS-------------AWNALLKTLEEPPK--HVVFIFATTEFQKIPLTIIS 168 (605)
T ss_pred cEEEEEechHhCCHH-------------HHHHHHHHHHhCCC--cEEEEEECCChHhhhHHHHh
Confidence 359999999987321 34788888886544 67888888899999999875
No 150
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.43 E-value=0.0018 Score=62.27 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=76.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|++||++..+++++++ ||...++++.|+.+++.++++....... ...++..++.+++.+.|.. ..+..+
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~ia~~~~G~p-R~a~~~ 222 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILG---VEIDEEGALEIARRSRGTP-RIANRL 222 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHcCCCc-hHHHHH
Confidence 347899999999999999988 9999999999999999999998887653 2345667889999999855 666666
Q ss_pred HHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 88 VRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 88 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+..+...+..+ ....++.++...++..
T Consensus 223 l~~~~~~a~~~---------------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 223 LRRVRDFAQVK---------------GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHc---------------CCCCCCHHHHHHHHHH
Confidence 66554333321 1234677777777765
No 151
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00031 Score=72.34 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=41.5
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC-CCCCCcc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL-RPGRLEV 355 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l-r~GRfd~ 355 (358)
...-|++|||+|.+-. ...|.||..|+.... .+++|.+|+.++.|-+++. |--+|++
T Consensus 117 ~~~KVvIIDEah~Lt~-------------~A~NALLK~LEEpp~--~~~fIL~tte~~kll~TI~SRc~~~~F 174 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT-------------AGFNALLKIVEEPPE--HLIFIFATTEPEKVLPTIRSRTHHYPF 174 (584)
T ss_pred CCceEEEEECCCcCCH-------------HHHHHHHHHHhcCCC--CeEEEEEeCChHhhHHHHHHhceEEEe
Confidence 3456999999998722 246788998886544 7888888899999988876 3334544
No 152
>KOG0744|consensus
Probab=97.43 E-value=0.00018 Score=67.54 Aligned_cols=110 Identities=24% Similarity=0.309 Sum_probs=81.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCc--------------h
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLAD--------------D 66 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~--------------~ 66 (358)
||.+...++|++++|+|..+.||-|+.- |-|-+.+++.|+.+.|++|++..+..+.....+.. +
T Consensus 289 lDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~ 366 (423)
T KOG0744|consen 289 LDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQK 366 (423)
T ss_pred HHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhH
Confidence 4677888999999999999999999998 99999999999999999999988877643221111 1
Q ss_pred hhHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 67 VNLKELAAL-TKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 67 ~~l~~la~~-t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.....++++ +.|+||+-|+.+---|-..-. ....++.++|+.|+..
T Consensus 367 ~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~-----------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 367 ALRNILIELSTVGLSGRTLRKLPLLAHAEYF-----------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred hHHHHHHHHhhcCCccchHhhhhHHHHHhcc-----------------CCCccChHHHHHHHHH
Confidence 123344444 489999988877554321111 2356888999988865
No 153
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.42 E-value=0.00071 Score=69.30 Aligned_cols=97 Identities=18% Similarity=0.151 Sum_probs=74.4
Q ss_pred eEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHH
Q psy3629 10 ILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVR 89 (358)
Q Consensus 10 V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~ 89 (358)
.++.+|||.|+.|+|++++ |+ ..|.|+.++.+++.+|++..+++.. ...++..++.++..+. +++++.++++
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~---i~is~~al~~I~~y~~--n~Rel~nll~ 306 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIG---INLEKHALELIVKYAS--NGREAVNIVQ 306 (531)
T ss_pred EEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhhh--hHHHHHHHHH
Confidence 3455566779999999999 98 5788888889999999999988753 2234556677776553 7999999999
Q ss_pred HHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 90 AAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 90 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.|+..+..+ +...++.+|+..++..
T Consensus 307 ~Aa~~A~~~---------------~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 307 LAAGIALGE---------------GRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHhhC---------------CCcEEcHHHHHHHhCC
Confidence 998766543 2346899999999974
No 154
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.42 E-value=0.00013 Score=76.93 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=31.2
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC--CccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN--RRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn--~~~~iD~a~lr 349 (358)
...+|||||||.+-.. . .+.|+..++. ..+++|++|+ ....++++++.
T Consensus 109 ~~~IL~IDEIh~Ln~~---------q----QdaLL~~lE~----g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 109 KRTILFIDEVHRFNKA---------Q----QDALLPWVEN----GTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred CceEEEEeChhhCCHH---------H----HHHHHHHhcC----ceEEEEEecCCChHhhhhhHhhc
Confidence 4579999999997432 1 2345555542 3577777663 33568899986
No 155
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.41 E-value=2.4e-05 Score=78.46 Aligned_cols=57 Identities=12% Similarity=0.353 Sum_probs=33.4
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc---cchhcCCCCCCc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM---IDEALLRPGRLE 354 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---iD~a~lr~GRfd 354 (358)
.+.+|+|||+|.+.+.+. .. ..|+..++.+...+..+||++++.|.. +++.+.. ||.
T Consensus 211 ~~dlLiiDDi~~l~~~~~-------~~----~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~ 270 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER-------TQ----EEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFE 270 (450)
T ss_pred cCCEEEEehhhhhcCCHH-------HH----HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--Hhc
Confidence 467999999999865521 11 223333333322223466666666666 6677665 775
No 156
>PRK06893 DNA replication initiation factor; Validated
Probab=97.41 E-value=9.6e-05 Score=67.41 Aligned_cols=55 Identities=11% Similarity=0.264 Sum_probs=33.0
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc---hhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID---EALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD---~a~lr 349 (358)
++.+|+|||++.+.+.+ .....+-.+++.+.. ..+.++|+++++.|..++ +.+..
T Consensus 91 ~~dlLilDDi~~~~~~~--------~~~~~l~~l~n~~~~--~~~~illits~~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNE--------EWELAIFDLFNRIKE--QGKTLLLISADCSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCCh--------HHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHccccchhHHH
Confidence 44799999999986542 112234444444321 223456667777788776 66666
No 157
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.40 E-value=0.0015 Score=61.84 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=64.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|++||+++.++++++. ||...+.++.|+.+++.++++....... ...++..++.+++.+.|+. ..+.++
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~---~~~~~~al~~ia~~~~G~p-R~~~~l 201 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLN---VEIEPEAALEIARRSRGTP-RIANRL 201 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHHhCCCc-chHHHH
Confidence 348899999999999999999 9999999999999999999998876542 2345667889999999855 666677
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 202 l~~~~ 206 (305)
T TIGR00635 202 LRRVR 206 (305)
T ss_pred HHHHH
Confidence 77554
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.37 E-value=0.00041 Score=71.02 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=17.8
Q ss_pred EEEEEecCCccccchhcCCCCCCc
Q psy3629 331 ILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
.+|.+|||.|+.|++|+.+ |+.
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~ 256 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV 256 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh
Confidence 4566677889999999998 865
No 159
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.00043 Score=70.74 Aligned_cols=50 Identities=20% Similarity=0.348 Sum_probs=36.0
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
....|+||||+|.+-. ...|.||..|+.... .+.+|.+||.|+.+-+.++
T Consensus 118 ~~~kVvIIDEad~ls~-------------~a~naLLK~LEepp~--~~~fIL~t~d~~kil~tI~ 167 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK-------------SAFNAMLKTLEEPPE--HVKFILATTDPQKIPVTVL 167 (527)
T ss_pred CCceEEEEcCcccCCH-------------HHHHHHHHHHhCCCC--CEEEEEEeCChhhCchhHH
Confidence 3456999999998732 236788888887543 6777777777888776654
No 160
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00043 Score=70.04 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=37.2
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...+.|++|||+|.+-. ...+.||..|+.... .+++|.+||.++.|.+++.+
T Consensus 117 ~~~~KVvIIDEad~Lt~-------------~a~naLLk~LEepp~--~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK-------------EAFNALLKTLEEPPP--RTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred cCCeeEEEEEChhhcCH-------------HHHHHHHHHHhcCCC--CeEEEEEECCHHHHHHHHHH
Confidence 45668999999997732 235678888876543 45666667788889888775
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.00056 Score=70.36 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=38.9
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|++|||+|.+- ....|.||.-|+.... .+++|++|+.++.|.+++..
T Consensus 118 ~~~KVvIIDEa~~Ls-------------~~a~naLLK~LEepp~--~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 118 SRYRVYIIDEVHMLS-------------NSAFNALLKTIEEPPP--YIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred CCCEEEEEEChhhcC-------------HHHHHHHHHhhccCCC--CEEEEEecCChHHhHHHHHH
Confidence 455799999999872 2246788888886443 67777888889999988875
No 162
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.00061 Score=71.37 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=44.2
Q ss_pred HHHHhhcCCC----CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 274 CTIILEAGPN----SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 274 ~~~~f~~a~~----~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
|+++.+.+.. ....|++|||+|.+-. ...+.||..|+.... .+++|.+|+.|+.|.+.++.
T Consensus 103 IReLie~~~~~P~~g~~KV~IIDEa~~LT~-------------~A~NALLKtLEEPP~--~tifILaTte~~KLl~TI~S 167 (725)
T PRK07133 103 IRELIENVKNLPTQSKYKIYIIDEVHMLSK-------------SAFNALLKTLEEPPK--HVIFILATTEVHKIPLTILS 167 (725)
T ss_pred HHHHHHHHHhchhcCCCEEEEEEChhhCCH-------------HHHHHHHHHhhcCCC--ceEEEEEcCChhhhhHHHHh
Confidence 4444544442 4557999999998732 247789999986544 67888888899999998774
No 163
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.26 E-value=0.0028 Score=59.70 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=74.6
Q ss_pred CCeEEEEecCC--CCC---cchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc------
Q psy3629 8 NNILVIGMTNR--RDM---IDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT------ 76 (358)
Q Consensus 8 ~~V~vI~aTN~--p~~---LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t------ 76 (358)
.+++||++|+. ++. ++|++.+ ||+..|+||.++.+++..|++.++++.. ...+....+.+.+..
T Consensus 159 ~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~---~~l~~~a~~~L~~~l~~~~~~ 233 (284)
T TIGR02880 159 DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQ---YRFSAEAEEAFADYIALRRTQ 233 (284)
T ss_pred CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhc---cccCHHHHHHHHHHHHHhCCC
Confidence 57888888764 333 4899999 9999999999999999999999998753 112333344444431
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHH
Q psy3629 77 KNF-SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLH 125 (358)
Q Consensus 77 ~g~-sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~ 125 (358)
+.+ .+.+++++++.+......|....... .. .......++.+|+.+
T Consensus 234 ~~~GN~R~lrn~ve~~~~~~~~r~~~~~~~-~~--~~~~~~~~~~~d~~~ 280 (284)
T TIGR02880 234 PHFANARSIRNAIDRARLRQANRLFCDLDR-VL--DKSDLETIDPEDLLA 280 (284)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcCcCC-CC--CHHHHhCCCHHHHhh
Confidence 223 48999999999988888776655321 11 112334556666643
No 164
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.25 E-value=0.00012 Score=60.14 Aligned_cols=52 Identities=27% Similarity=0.347 Sum_probs=29.9
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-------C--CCCCCEEEEEecCCcc-----ccchhcCCCCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-------V--ERLNNILVIGMTNRRD-----MIDEALLRPGR 352 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-------~--~~~~~v~vi~aTn~~~-----~iD~a~lr~GR 352 (358)
.|+|+|||-..-++ +-+.||..|.. . .-.+..+||||-|..+ -|.+|++- |
T Consensus 64 ~ill~DEiNrappk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--R 128 (131)
T PF07726_consen 64 NILLADEINRAPPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--R 128 (131)
T ss_dssp SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--T
T ss_pred ceeeecccccCCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--c
Confidence 49999999886444 45566666552 1 1113588999999877 67777776 6
Q ss_pred C
Q psy3629 353 L 353 (358)
Q Consensus 353 f 353 (358)
|
T Consensus 129 F 129 (131)
T PF07726_consen 129 F 129 (131)
T ss_dssp S
T ss_pred c
Confidence 6
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00076 Score=69.96 Aligned_cols=51 Identities=18% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-||||||+|.+-. ...+.||..|+.... .+++|.+|+.++.+.+.+..
T Consensus 119 ~~~kVvIIDEa~~L~~-------------~a~naLLk~LEepp~--~tv~Il~t~~~~kll~tI~S 169 (585)
T PRK14950 119 ARYKVYIIDEVHMLST-------------AAFNALLKTLEEPPP--HAIFILATTEVHKVPATILS 169 (585)
T ss_pred CCeEEEEEeChHhCCH-------------HHHHHHHHHHhcCCC--CeEEEEEeCChhhhhHHHHh
Confidence 4456999999998732 236778888886543 56666677778888777653
No 166
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.00082 Score=69.54 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=39.0
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC-CCCCCcc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL-RPGRLEV 355 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l-r~GRfd~ 355 (358)
...-||+|||+|.+-. .-.|.||..|+.... .+.+|.+|+.++.+-+.++ |--+|++
T Consensus 131 a~~KVvIIDEad~Ls~-------------~a~naLLKtLEePp~--~~~fIl~tte~~kll~tI~SRcq~~~f 188 (598)
T PRK09111 131 ARYKVYIIDEVHMLST-------------AAFNALLKTLEEPPP--HVKFIFATTEIRKVPVTVLSRCQRFDL 188 (598)
T ss_pred CCcEEEEEEChHhCCH-------------HHHHHHHHHHHhCCC--CeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 4457999999998832 236788888886544 5667677778887777766 3334443
No 167
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.00065 Score=69.41 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=36.2
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|+||||+|.+-. ...|.||..|+.... .+.+|++|+.+..|-+.++.
T Consensus 118 g~~kViIIDEa~~ls~-------------~a~naLLK~LEepp~--~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK-------------QSFNALLKTLEEPPE--YVKFILATTDYHKIPVTILS 168 (546)
T ss_pred CCcEEEEEechhhccH-------------HHHHHHHHHHhcCCC--CceEEEEECChhhhhhhHHH
Confidence 3456999999988732 246788888886433 56666666778888877664
No 168
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.22 E-value=0.00092 Score=69.26 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=36.9
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
..-|++|||+|.+-.. ..|.||..|+.... .+.+|.+|+.|+.|-+.++.
T Consensus 124 ~~KV~IIDEvh~Ls~~-------------a~NaLLKtLEEPP~--~~~fIL~Ttd~~kil~TIlS 173 (618)
T PRK14951 124 RFKVFMIDEVHMLTNT-------------AFNAMLKTLEEPPE--YLKFVLATTDPQKVPVTVLS 173 (618)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHhcccCCC--CeEEEEEECCchhhhHHHHH
Confidence 3469999999998432 36788888886443 66777777788888877764
No 169
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.17 E-value=4.8e-05 Score=75.31 Aligned_cols=56 Identities=13% Similarity=0.355 Sum_probs=31.9
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc---chhcCCCCCCc
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI---DEALLRPGRLE 354 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i---D~a~lr~GRfd 354 (358)
+.+|+|||+|.+.+.+. ... .|+..++.+...+..+||++++.|..+ ++.+.. ||.
T Consensus 200 ~dlLiiDDi~~l~~~~~-------~~~----~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~ 258 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKER-------TQE----EFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFE 258 (405)
T ss_pred CCEEEEehhhhhcCCHH-------HHH----HHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hcc
Confidence 57999999999865421 112 233333332222344677776677665 456655 775
No 170
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=7.5e-05 Score=74.68 Aligned_cols=23 Identities=4% Similarity=-0.129 Sum_probs=18.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
+..+++||| ||+ ||.| +.+++..
T Consensus 130 ~n~l~lyG~--~G~GKTHL---l~ai~~~ 153 (440)
T PRK14088 130 YNPLFIYGG--VGLGKTHL---LQSIGNY 153 (440)
T ss_pred CCeEEEEcC--CCCcHHHH---HHHHHHH
Confidence 345899999 999 9999 8877443
No 171
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.10 E-value=0.00067 Score=55.49 Aligned_cols=122 Identities=14% Similarity=0.168 Sum_probs=62.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...++++|| ||+ ||.+ ++.+......... ... +...+.+..+... ........+++.......
T Consensus 4 ~~~~~i~G~--~G~GKT~~---~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~ 67 (131)
T PF13401_consen 4 QRILVISGP--PGSGKTTL---IKRLARQLNAEAE------IKN-HPDVIYVNCPSSR----TPRDFAQEILEALGLPLK 67 (131)
T ss_dssp ---EEEEE---TTSSHHHH---HHHHHHHHHHHHH------HCC-CEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSS
T ss_pred CcccEEEcC--CCCCHHHH---HHHHHHHhHHhhh------ccC-CCcEEEEEeCCCC----CHHHHHHHHHHHhCcccc
Confidence 345799999 999 9998 6666332211100 000 3333333322221 222223334444322220
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
...+.+.....+.+..+.....+|+|||+|.+. . ..+++.|...++ ...-.++++|+.
T Consensus 68 --------~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 68 --------SRQTSDELRSLLIDALDRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------STS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------ccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 123455555666666666666799999999986 1 456767766666 333357777766
Q ss_pred C
Q psy3629 338 N 338 (358)
Q Consensus 338 n 338 (358)
+
T Consensus 126 ~ 126 (131)
T PF13401_consen 126 E 126 (131)
T ss_dssp T
T ss_pred h
Confidence 4
No 172
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.09 E-value=0.0006 Score=65.62 Aligned_cols=56 Identities=21% Similarity=0.404 Sum_probs=38.1
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC---------CCC--CCCCEEEEEecCCcc-ccchhcCCCCCCc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD---------GVE--RLNNILVIGMTNRRD-MIDEALLRPGRLE 354 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld---------~~~--~~~~v~vi~aTn~~~-~iD~a~lr~GRfd 354 (358)
-+||+|||+.+-+ .+.+.|+..|+ |.. ...++++++|+|-.+ .+.++++. ||.
T Consensus 130 GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~ 194 (334)
T PRK13407 130 GYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFG 194 (334)
T ss_pred CeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcc
Confidence 4899999999733 24455555553 321 123688888888655 58889999 998
Q ss_pred ccc
Q psy3629 355 VSE 357 (358)
Q Consensus 355 ~~~ 357 (358)
+++
T Consensus 195 ~~v 197 (334)
T PRK13407 195 LSV 197 (334)
T ss_pred eEE
Confidence 764
No 173
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.08 E-value=0.00073 Score=64.75 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=29.5
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.+.+||+||+|.+-.. ..+.|+..|+.... ...+|.+||++..+.+.+..
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s 174 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS 174 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC
Confidence 3469999999987322 12344444554332 23455566667777777665
No 174
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.04 E-value=8.5e-05 Score=72.87 Aligned_cols=85 Identities=13% Similarity=0.122 Sum_probs=65.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-ccccccc-HHHHHHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFS-LLQRKWAELSLHQ 255 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~~~~~~~~~~ 255 (358)
+.++|+.|| ||+ ||.+ |+++ +...+.+|+.+.+..+. .+|+|.. +..
T Consensus 50 ~~~ILliGp--~G~GKT~L---Ar~L---------------Ak~l~~~fi~vD~t~f~e~GyvG~d~e~~---------- 99 (443)
T PRK05201 50 PKNILMIGP--TGVGKTEI---ARRL---------------AKLANAPFIKVEATKFTEVGYVGRDVESI---------- 99 (443)
T ss_pred CceEEEECC--CCCCHHHH---HHHH---------------HHHhCChheeecchhhccCCcccCCHHHH----------
Confidence 578999999 999 9999 9999 88889999999888776 4688743 333
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHH
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLS 320 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~ 320 (358)
++++ |+.|....|+ |...+.|..... ...+|++++|+.
T Consensus 100 ---ir~L---------------~~~A~~~~~~-------~~~~~~~~~a~~--~~e~ri~~~l~~ 137 (443)
T PRK05201 100 ---IRDL---------------VEIAVKMVRE-------EKREKVREKAEE--AAEERILDALLP 137 (443)
T ss_pred ---HHHH---------------HHHHHHHhHH-------HHHHHHHHHHHH--HHHHHHHHHhCC
Confidence 4444 9999888887 777777654332 266788888876
No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.0022 Score=61.68 Aligned_cols=58 Identities=9% Similarity=0.296 Sum_probs=44.9
Q ss_pred HhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
+.........-|++||++|.+-.. ..|.||..|+...+ ++++|.+|++|+.|-|.++-
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEEPp~--~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLEEPSG--DTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHhCCCC--CeEEEEEECChhhCcHHHHh
Confidence 344555566779999999998432 46889999997553 78899999999999999874
No 176
>KOG0989|consensus
Probab=97.02 E-value=0.00087 Score=62.68 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=34.6
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
-|++|||.|++... .-+.|..-|+.... .+.+|..||.++.|-.-+.
T Consensus 131 KiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~--~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 131 KIIILDECDSMTSD-------------AQAALRRTMEDFSR--TTRFILICNYLSRIIRPLV 177 (346)
T ss_pred eEEEEechhhhhHH-------------HHHHHHHHHhcccc--ceEEEEEcCChhhCChHHH
Confidence 69999999998433 23578888897554 5677778888887765554
No 177
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.02 E-value=0.0038 Score=57.96 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=62.7
Q ss_pred CCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc------
Q psy3629 8 NNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT------ 76 (358)
Q Consensus 8 ~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t------ 76 (358)
+++++|++++..+ .++|++++ ||+..|+|+.++.+++.+|++.++.... ...++..+..+++..
T Consensus 142 ~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~---~~l~~~a~~~l~~~~~~~~~~ 216 (261)
T TIGR02881 142 NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKERE---YKLTEEAKWKLREHLYKVDQL 216 (261)
T ss_pred CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcC---CccCHHHHHHHHHHHHHHHhc
Confidence 4566666654322 36889999 9999999999999999999999987642 122333344443321
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy3629 77 ---KNFSGAELEGLVRAAQSCAMNRLIKAT 103 (358)
Q Consensus 77 ---~g~sgadi~~l~~~A~~~a~~r~~~~~ 103 (358)
..-.++.+.+++..|......|.+...
T Consensus 217 ~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 217 SSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 123578888999888877777766543
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.02 E-value=0.0047 Score=66.23 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccc-------cccccCchhhHHHHHHh-cCCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMR-------SYKKLADDVNLKELAAL-TKNF 79 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~-------~~~~~~~~~~l~~la~~-t~g~ 79 (358)
.++++|+|||.++.||+++++ ||+ .|+|+.|+.+++.+|++.++.... ......++..+..+++. |..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 479999999999999999999 994 899999999999999988773210 00112244556666663 3445
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
..++|+..+...+..+..++........ +..-...++.+++...+..
T Consensus 539 g~R~l~r~i~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVKLVEQGEKKK---SEAESVVITPDNLKKYLGK 585 (775)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccCccc---CCcccccCCHHHHHHhcCc
Confidence 6677777777766666555443221100 0001245777777777653
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.99 E-value=0.0021 Score=55.34 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.+..-|++|||+|.+-. ..-|.||..|+.... ++++|.+|+.++.|-|.++-
T Consensus 100 ~~~~KviiI~~ad~l~~-------------~a~NaLLK~LEepp~--~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 100 EGKYKVIIIDEADKLTE-------------EAQNALLKTLEEPPE--NTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp TSSSEEEEEETGGGS-H-------------HHHHHHHHHHHSTTT--TEEEEEEES-GGGS-HHHHT
T ss_pred cCCceEEEeehHhhhhH-------------HHHHHHHHHhcCCCC--CEEEEEEECChHHChHHHHh
Confidence 34567999999999743 346899999996654 78889999999988887765
No 180
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0013 Score=62.50 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=38.6
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
....-||+|||+|.+-.. ..|.|+..|.-... +..+|.+||.|+.|=+-+.
T Consensus 107 ~~~~kviiidead~mt~~-------------A~nallk~lEep~~--~~~~il~~n~~~~il~tI~ 157 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-------------AANALLKTLEEPPK--NTRFILITNDPSKILPTIR 157 (325)
T ss_pred CCCceEEEeCcHHHHhHH-------------HHHHHHHHhccCCC--CeEEEEEcCChhhccchhh
Confidence 345679999999998553 35788888885544 7889999999988877543
No 181
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.0054 Score=59.86 Aligned_cols=57 Identities=14% Similarity=0.205 Sum_probs=43.0
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...+....|-|++|||+|.+- ....|.||..+..... ++++|.+|++|+.+.+.+..
T Consensus 134 ~~~~~~~~~kVviIDead~m~-------------~~aanaLLK~LEepp~--~~~~IL~t~~~~~llpti~S 190 (365)
T PRK07471 134 GLTAAEGGWRVVIVDTADEMN-------------ANAANALLKVLEEPPA--RSLFLLVSHAPARLLPTIRS 190 (365)
T ss_pred CcCcccCCCEEEEEechHhcC-------------HHHHHHHHHHHhcCCC--CeEEEEEECCchhchHHhhc
Confidence 444556788899999999872 2346788888885443 67888899999999888765
No 182
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0018 Score=65.42 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=55.7
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC-
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL- 348 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l- 348 (358)
.+..+.+++-.--...+-|.+|||+.-+ +....|.||.-+..... .|++|.||..|+.|.+-++
T Consensus 104 iR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLKTLEEPP~--hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 104 IREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLKTLEEPPS--HVKFILATTEPQKIPNTILS 168 (515)
T ss_pred HHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhcccccCcc--CeEEEEecCCcCcCchhhhh
Confidence 3344444555555677789999998776 23468999999996654 7999999999999999988
Q ss_pred CCCCCccccC
Q psy3629 349 RPGRLEVSEI 358 (358)
Q Consensus 349 r~GRfd~~~~ 358 (358)
|-=|||++-|
T Consensus 169 Rcq~f~fkri 178 (515)
T COG2812 169 RCQRFDFKRL 178 (515)
T ss_pred ccccccccCC
Confidence 6668887643
No 183
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.90 E-value=0.0011 Score=57.43 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=29.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+++-.. ....+.+|+.++++.+
T Consensus 22 ~~pVlI~GE--~GtGK~~l---A~~IH~~------------s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 22 DLPVLITGE--TGTGKELL---ARAIHNN------------SPRKNGPFISVNCAAL 61 (168)
T ss_dssp TS-EEEECS--TTSSHHHH---HHHHHHC------------STTTTS-EEEEETTTS
T ss_pred CCCEEEEcC--CCCcHHHH---HHHHHHh------------hhcccCCeEEEehhhh
Confidence 356999999 999 9999 9888321 4556788999998876
No 184
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.89 E-value=0.00039 Score=62.72 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=18.7
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
....++++|| ||+ ||.+ |+++.
T Consensus 37 ~~~~lll~G~--~G~GKT~l---a~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGE--SGSGKSHL---LQAAC 59 (226)
T ss_pred CCCeEEEECC--CCCCHHHH---HHHHH
Confidence 4567999999 999 9999 88873
No 185
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.86 E-value=0.0012 Score=67.40 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=37.4
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC---------CCCC--CCCEEEEEecCCcc-------------c
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD---------GVER--LNNILVIGMTNRRD-------------M 342 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld---------~~~~--~~~v~vi~aTn~~~-------------~ 342 (358)
-++++||+|.+-.. ..+.|+..|+ |... ..+.-||||+|..+ .
T Consensus 302 Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~ 368 (509)
T smart00350 302 GVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENID 368 (509)
T ss_pred CEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccC
Confidence 58999999997433 2334444443 2211 13588999999653 6
Q ss_pred cchhcCCCCCCccc
Q psy3629 343 IDEALLRPGRLEVS 356 (358)
Q Consensus 343 iD~a~lr~GRfd~~ 356 (358)
|++++|. |||+.
T Consensus 369 l~~~lLs--RFdLi 380 (509)
T smart00350 369 LPAPILS--RFDLL 380 (509)
T ss_pred CChHHhC--ceeeE
Confidence 9999999 99974
No 186
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.85 E-value=0.00099 Score=66.69 Aligned_cols=21 Identities=29% Similarity=0.040 Sum_probs=18.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-..+|++|| ||| ||.+ |+++.
T Consensus 39 g~hVLL~Gp--PGTGKT~L---AraLa 60 (498)
T PRK13531 39 GESVFLLGP--PGIAKSLI---ARRLK 60 (498)
T ss_pred CCCEEEECC--CChhHHHH---HHHHH
Confidence 345899999 999 9999 88883
No 187
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.0029 Score=64.52 Aligned_cols=49 Identities=22% Similarity=0.325 Sum_probs=36.2
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.-|++|||+|.+-. ...|.||.-|+.... .+.+|.+||.|..|-++++.
T Consensus 118 ~KVvIIDEad~Lt~-------------~A~NALLK~LEEpp~--~t~FIL~ttd~~kL~~tI~S 166 (535)
T PRK08451 118 FKIFIIDEVHMLTK-------------EAFNALLKTLEEPPS--YVKFILATTDPLKLPATILS 166 (535)
T ss_pred eEEEEEECcccCCH-------------HHHHHHHHHHhhcCC--ceEEEEEECChhhCchHHHh
Confidence 35999999988732 346788888887643 56666677788999888765
No 188
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.0031 Score=65.69 Aligned_cols=49 Identities=20% Similarity=0.332 Sum_probs=35.2
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.-|++|||+|.+-. ...+.||..|+.... .+++|.+|+.+..|-++++.
T Consensus 122 ~KVvIIdea~~Ls~-------------~a~naLLK~LEepp~--~tifIL~tt~~~kIl~tI~S 170 (614)
T PRK14971 122 YKIYIIDEVHMLSQ-------------AAFNAFLKTLEEPPS--YAIFILATTEKHKILPTILS 170 (614)
T ss_pred cEEEEEECcccCCH-------------HHHHHHHHHHhCCCC--CeEEEEEeCCchhchHHHHh
Confidence 45999999998832 236788888887544 55666666677888888765
No 189
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.79 E-value=0.0036 Score=60.78 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=39.8
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...+.....-|++|||+|.+-.. ..|.||..|+.... ++++|..|++|+.+.|.+.-
T Consensus 134 ~~~~~~g~~rVviIDeAd~l~~~-------------aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS 190 (351)
T PRK09112 134 SQTSGDGNWRIVIIDPADDMNRN-------------AANAILKTLEEPPA--RALFILISHSSGRLLPTIRS 190 (351)
T ss_pred hhccccCCceEEEEEchhhcCHH-------------HHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh
Confidence 33344566679999999998322 25678888876443 56666667889999888754
No 190
>KOG1969|consensus
Probab=96.76 E-value=0.0028 Score=65.51 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=33.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK 235 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
+.+=.||+|| ||. ||.| |..+ |...||..+.+++++-.
T Consensus 325 ~kKilLL~Gp--pGlGKTTL---AHVi---------------AkqaGYsVvEINASDeR 363 (877)
T KOG1969|consen 325 PKKILLLCGP--PGLGKTTL---AHVI---------------AKQAGYSVVEINASDER 363 (877)
T ss_pred ccceEEeecC--CCCChhHH---HHHH---------------HHhcCceEEEecccccc
Confidence 3455889999 999 9999 9999 99999999999999985
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.0038 Score=60.27 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=43.6
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
........--|++||++|.+-.. .-|.||+.|+... .++++|.+|++|+.|.|.++.
T Consensus 125 ~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp--~~t~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 125 GVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLEEPP--PGTVFLLVSARIDRLLPTILS 181 (342)
T ss_pred ccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhcCCC--cCcEEEEEECChhhCcHHHHh
Confidence 33444455568889999887332 3589999999544 489999999999999999876
No 192
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.74 E-value=0.0018 Score=61.47 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=31.2
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.+.+|+|||+|.+... ..+.|+..++.... ++.+|.++|.+..+.+++.+
T Consensus 102 ~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred CceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH
Confidence 4579999999988432 12455555655443 34555667777776666654
No 193
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.72 E-value=0.00029 Score=70.52 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=18.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
...+++||| ||+ ||.| +.++..
T Consensus 141 ~npl~L~G~--~G~GKTHL---l~Ai~~ 163 (445)
T PRK12422 141 FNPIYLFGP--EGSGKTHL---MQAAVH 163 (445)
T ss_pred CceEEEEcC--CCCCHHHH---HHHHHH
Confidence 456899999 999 9999 888843
No 194
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.70 E-value=0.0024 Score=66.20 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=39.9
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC---------CCCC--CCCEEEEEecCCcc---ccchhcCCCCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD---------GVER--LNNILVIGMTNRRD---MIDEALLRPGR 352 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld---------~~~~--~~~v~vi~aTn~~~---~iD~a~lr~GR 352 (358)
.+||+|||+.+-+. +.+.||..|+ |... ..++.||+|+|..+ .+.++++. |
T Consensus 86 GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--R 150 (589)
T TIGR02031 86 GVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--R 150 (589)
T ss_pred CcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--h
Confidence 59999999997433 4556666664 2211 13578899888876 78899999 9
Q ss_pred Ccccc
Q psy3629 353 LEVSE 357 (358)
Q Consensus 353 fd~~~ 357 (358)
|++++
T Consensus 151 f~l~v 155 (589)
T TIGR02031 151 LALHV 155 (589)
T ss_pred ccCee
Confidence 99864
No 195
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.70 E-value=0.0021 Score=67.22 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=38.4
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC-C--------CC--CCCCEEEEEecCCc-cccchhcCCCCCCc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD-G--------VE--RLNNILVIGMTNRR-DMIDEALLRPGRLE 354 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld-~--------~~--~~~~v~vi~aTn~~-~~iD~a~lr~GRfd 354 (358)
-|||+|||+.+-.. +.+.||..|+ | .. ...++.+|+|+|.- ..+.++++. ||+
T Consensus 128 GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~ 192 (633)
T TIGR02442 128 GILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFG 192 (633)
T ss_pred CeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcc
Confidence 59999999998433 4556666664 2 11 11358999998843 357889998 998
Q ss_pred ccc
Q psy3629 355 VSE 357 (358)
Q Consensus 355 ~~~ 357 (358)
+++
T Consensus 193 l~i 195 (633)
T TIGR02442 193 LCV 195 (633)
T ss_pred eEE
Confidence 754
No 196
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.0029 Score=62.56 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=33.2
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...|+||||+|.+-.. -.+.||..|+.... ..++|.+|++++.|-+++..
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s 176 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS 176 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH
Confidence 3469999999988432 24567777775543 45555566677777777654
No 197
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.0039 Score=59.54 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=40.4
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.........-|++||++|.+-. ..-|.||..|+... .++++|.+|++|+.|-+.+.-
T Consensus 86 ~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEepp--~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 86 NKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEEPP--KGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred hcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcCCC--CCeEEEEEeCChHhCcHHHHh
Confidence 3344445667999999988722 23578899999654 366777777889988887764
No 198
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0011 Score=61.51 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=18.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
..+++++|| ||+ ||.+ |.++.
T Consensus 98 ~~nlll~Gp--~GtGKThL---a~al~ 119 (254)
T PRK06526 98 KENVVFLGP--PGTGKTHL---AIGLG 119 (254)
T ss_pred CceEEEEeC--CCCchHHH---HHHHH
Confidence 567999999 999 9999 88774
No 199
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.61 E-value=0.0004 Score=71.39 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=17.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
.++|||+ +|+ ||.| +.+++.
T Consensus 316 pL~LyG~--sGsGKTHL---L~AIa~ 336 (617)
T PRK14086 316 PLFIYGE--SGLGKTHL---LHAIGH 336 (617)
T ss_pred cEEEECC--CCCCHHHH---HHHHHH
Confidence 3899999 999 9999 888743
No 200
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.59 E-value=0.0021 Score=58.73 Aligned_cols=106 Identities=23% Similarity=0.309 Sum_probs=65.1
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+...+||+|+ .|| ||++ ++++...+ ...+.-++.+...++. .
T Consensus 50 ~pannvLL~G~--rGtGKSSl---Vkall~~y------------~~~GLRlIev~k~~L~---------~---------- 93 (249)
T PF05673_consen 50 LPANNVLLWGA--RGTGKSSL---VKALLNEY------------ADQGLRLIEVSKEDLG---------D---------- 93 (249)
T ss_pred CCCcceEEecC--CCCCHHHH---HHHHHHHH------------hhcCceEEEECHHHhc---------c----------
Confidence 35677999999 999 9999 88873221 1223334444333320 0
Q ss_pred cccccccccCCCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-CC-CCCCEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-VE-RLNNIL 332 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-~~-~~~~v~ 332 (358)
+.++ +...+ ...+-|||+|++. +.. + +.-...|-+-||| ++ .-.||+
T Consensus 94 ---l~~l---------------~~~l~~~~~kFIlf~DDLs--Fe~----~------d~~yk~LKs~LeGgle~~P~Nvl 143 (249)
T PF05673_consen 94 ---LPEL---------------LDLLRDRPYKFILFCDDLS--FEE----G------DTEYKALKSVLEGGLEARPDNVL 143 (249)
T ss_pred ---HHHH---------------HHHHhcCCCCEEEEecCCC--CCC----C------cHHHHHHHHHhcCccccCCCcEE
Confidence 3333 44433 3456799999754 222 1 1224566677787 33 336899
Q ss_pred EEEecCCccccchhcC
Q psy3629 333 VIGMTNRRDMIDEALL 348 (358)
Q Consensus 333 vi~aTn~~~~iD~a~l 348 (358)
+.+|+||.+.+.+-.-
T Consensus 144 iyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 144 IYATSNRRHLVPESFS 159 (249)
T ss_pred EEEecchhhccchhhh
Confidence 9999999999876543
No 201
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.57 E-value=0.0022 Score=62.40 Aligned_cols=40 Identities=15% Similarity=0.439 Sum_probs=27.2
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
.+|+|||+..- .. ....++..|+..+= . .+|++|+|+|++
T Consensus 129 ~lLcfDEF~V~-----Di-----aDAmil~rLf~~l~--~--~gvvlVaTSN~~ 168 (362)
T PF03969_consen 129 RLLCFDEFQVT-----DI-----ADAMILKRLFEALF--K--RGVVLVATSNRP 168 (362)
T ss_pred CEEEEeeeecc-----ch-----hHHHHHHHHHHHHH--H--CCCEEEecCCCC
Confidence 49999998762 10 12456666776653 2 378999999986
No 202
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.54 E-value=0.0045 Score=59.86 Aligned_cols=56 Identities=21% Similarity=0.420 Sum_probs=37.2
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC---------CCC--CCCCEEEEEecCCcc-ccchhcCCCCCCc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD---------GVE--RLNNILVIGMTNRRD-MIDEALLRPGRLE 354 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld---------~~~--~~~~v~vi~aTn~~~-~iD~a~lr~GRfd 354 (358)
-+||+|||+.+-+. +.+.||..|+ |.. ...++++|+|.|-.+ .+.++++. ||.
T Consensus 146 GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~ 210 (350)
T CHL00081 146 GILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFG 210 (350)
T ss_pred CEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhC
Confidence 69999999998544 2334444443 321 123678888777655 58888988 998
Q ss_pred ccc
Q psy3629 355 VSE 357 (358)
Q Consensus 355 ~~~ 357 (358)
+++
T Consensus 211 l~i 213 (350)
T CHL00081 211 MHA 213 (350)
T ss_pred cee
Confidence 653
No 203
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0047 Score=60.30 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=40.3
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc---ccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD---MIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~iD~a~lr 349 (358)
...+.||.+||+|.|+...+ .++-+|+...+-. ..+|.+|+.+|..+ .+|+-+..
T Consensus 121 ~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred cCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh
Confidence 35668999999999987732 4566777766655 45799999999875 55665543
No 204
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.49 E-value=0.027 Score=54.68 Aligned_cols=103 Identities=20% Similarity=0.142 Sum_probs=68.2
Q ss_pred CCeEEEEecCCCC---CcchhhcCCCCCc-eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHh---cCCCC
Q psy3629 8 NNILVIGMTNRRD---MIDEALLRPGRLE-LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAAL---TKNFS 80 (358)
Q Consensus 8 ~~V~vI~aTN~p~---~LD~Al~R~GRfd-~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~---t~g~s 80 (358)
.++.+|++||.++ .+++.+.+ ||. ..|+|++++.++..+|++..++.... ....++..++.+++. +.|.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~-~~~~~~~~l~~i~~~~~~~~Gd- 239 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFY-DGVLDDGVIPLCAALAAQEHGD- 239 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhcc-CCCCChhHHHHHHHHHHHhcCC-
Confidence 5799999999987 58888887 775 68999999999999999988862110 012233333444443 3442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
....-.+|+.|...+..+ +...++.+|+..|+..
T Consensus 240 ~R~al~~l~~a~~~a~~~---------------~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAERE---------------GAERVTEDHVEKAQEK 273 (365)
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHH
Confidence 334444666666555433 2346888888888876
No 205
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.46 E-value=0.0012 Score=60.54 Aligned_cols=21 Identities=14% Similarity=-0.129 Sum_probs=17.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...++++|| ||+ ||.+ +.++.
T Consensus 45 ~~~l~l~Gp--~G~GKThL---l~a~~ 66 (235)
T PRK08084 45 SGYIYLWSR--EGAGRSHL---LHAAC 66 (235)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHH
Confidence 346899999 999 9999 77763
No 206
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.0034 Score=60.41 Aligned_cols=52 Identities=19% Similarity=0.282 Sum_probs=39.3
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
....-|++|||+|.+-. ...|.||..|+.... ++++|.+|+.++.|-|++..
T Consensus 108 ~~~~kvviI~~a~~~~~-------------~a~NaLLK~LEEPp~--~~~~Il~t~~~~~ll~TIrS 159 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA-------------SAANSLLKFLEEPSG--GTTAILLTENKHQILPTILS 159 (329)
T ss_pred ccCceEEEeehHhhhCH-------------HHHHHHHHHhcCCCC--CceEEEEeCChHhCcHHHHh
Confidence 34456999999988732 246789999997554 67777788888899888765
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.25 E-value=0.019 Score=56.86 Aligned_cols=101 Identities=24% Similarity=0.200 Sum_probs=71.3
Q ss_pred CCCeEEEEecCCCCC---cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDM---IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~---LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..+||.+++.|.. +++.+.. ||. ..++++.|+.++|..|++..++..+ ...++..++.||+.+.+ +.
T Consensus 231 ~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~---~~l~~e~l~~ia~~~~~-~~ 304 (405)
T TIGR00362 231 NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEG---LELPDEVLEFIAKNIRS-NV 304 (405)
T ss_pred CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CH
Confidence 345567777666765 4578887 997 4799999999999999999987653 33466778889988875 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+++..++......+... ...++.+.+.+++..
T Consensus 305 r~l~~~l~~l~~~a~~~----------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 305 RELEGALNRLLAYASLT----------------GKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHH
Confidence 88887777654433221 234666666666654
No 208
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.18 E-value=0.0071 Score=61.41 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=18.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+...+++.|| ||+ ||++ ++.+.
T Consensus 210 ~g~~vlliG~--pGsGKTtl---ar~l~ 232 (499)
T TIGR00368 210 GGHNLLLFGP--PGSGKTML---ASRLQ 232 (499)
T ss_pred CCCEEEEEec--CCCCHHHH---HHHHh
Confidence 4456999999 999 9999 87774
No 209
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.014 Score=60.83 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=36.3
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|++|||+|.+-.. -.|.||..|+.... .+++|.+|++++.|-+.+..
T Consensus 126 ~~~KVvIIdEad~Lt~~-------------a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S 176 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTA-------------AFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS 176 (620)
T ss_pred CCCEEEEEeChhhcCHH-------------HHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh
Confidence 34469999999988422 25778888887654 45666666778888888765
No 210
>PRK08727 hypothetical protein; Validated
Probab=96.12 E-value=0.0014 Score=59.96 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=30.2
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc---chhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI---DEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i---D~a~lr 349 (358)
+..+|+|||+|.+.+.+. .. ..+-.+++.+..- +.-+|+.+.+.|..+ ++++.+
T Consensus 93 ~~dlLiIDDi~~l~~~~~-------~~-~~lf~l~n~~~~~---~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-------DE-VALFDFHNRARAA---GITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-------HH-HHHHHHHHHHHHc---CCeEEEECCCChhhhhhhhHHHHH
Confidence 335999999998865421 11 2233455444221 122455555577766 677776
No 211
>PRK05642 DNA replication initiation factor; Validated
Probab=96.11 E-value=0.0023 Score=58.54 Aligned_cols=52 Identities=12% Similarity=0.219 Sum_probs=29.8
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc---chhcCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI---DEALLR 349 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i---D~a~lr 349 (358)
.+|+||+++.+.+... +. . .|+.-++.+...+..++++++..|..+ .+.+..
T Consensus 99 d~LiiDDi~~~~~~~~-------~~-~---~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S 153 (234)
T PRK05642 99 ELVCLDDLDVIAGKAD-------WE-E---ALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS 153 (234)
T ss_pred CEEEEechhhhcCChH-------HH-H---HHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH
Confidence 4899999998865421 11 2 233333334333456788887777655 344444
No 212
>PRK06620 hypothetical protein; Validated
Probab=96.04 E-value=0.0034 Score=56.63 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=17.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++|||| ||+ ||.| +.++
T Consensus 45 ~~l~l~Gp--~G~GKThL---l~a~ 64 (214)
T PRK06620 45 FTLLIKGP--SSSGKTYL---TKIW 64 (214)
T ss_pred ceEEEECC--CCCCHHHH---HHHH
Confidence 56899999 999 9999 8877
No 213
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.02 E-value=0.0033 Score=56.94 Aligned_cols=21 Identities=14% Similarity=-0.179 Sum_probs=18.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...++++|| ||+ ||.+ ++++.
T Consensus 42 ~~~~~l~G~--~G~GKT~L---a~ai~ 63 (227)
T PRK08903 42 DRFFYLWGE--AGSGRSHL---LQALV 63 (227)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHH
Confidence 456899999 999 9999 88883
No 214
>KOG0478|consensus
Probab=95.98 E-value=0.045 Score=56.39 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.2
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+-..+||.|. ||| |+.+.+++..+
T Consensus 461 ~~INILL~GD--PGtsKSqlLqyv~~l 485 (804)
T KOG0478|consen 461 GDINILLVGD--PGTSKSQLLQYCHRL 485 (804)
T ss_pred ccceEEEecC--CCcCHHHHHHHHHHh
Confidence 4467999999 999 99997777777
No 215
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.97 E-value=0.012 Score=56.17 Aligned_cols=82 Identities=20% Similarity=0.294 Sum_probs=56.3
Q ss_pred cccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC----CCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG----GNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~----~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
..++-......|.++..+....+...+.+|++|-+-++.+...-.+ ...+...|+++++|..|.+.-...++.+|.
T Consensus 108 ~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~ 187 (321)
T TIGR02012 108 DNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIF 187 (321)
T ss_pred HHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3333333346788888887778888999999999999987432211 122345688889999888886666787877
Q ss_pred ecCCcc
Q psy3629 336 MTNRRD 341 (358)
Q Consensus 336 aTn~~~ 341 (358)
|..-.+
T Consensus 188 tNQvr~ 193 (321)
T TIGR02012 188 INQIRE 193 (321)
T ss_pred Eeccee
Confidence 754333
No 216
>PRK08181 transposase; Validated
Probab=95.97 E-value=0.007 Score=56.55 Aligned_cols=21 Identities=33% Similarity=0.181 Sum_probs=18.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
..+++|+|| ||+ ||.| +.++.
T Consensus 106 ~~nlll~Gp--~GtGKTHL---a~Aia 127 (269)
T PRK08181 106 GANLLLFGP--PGGGKSHL---AAAIG 127 (269)
T ss_pred CceEEEEec--CCCcHHHH---HHHHH
Confidence 456999999 999 9999 88874
No 217
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.96 E-value=0.025 Score=56.89 Aligned_cols=101 Identities=23% Similarity=0.198 Sum_probs=72.6
Q ss_pred CCCeEEEEecCCCCC---cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDM---IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~---LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..+||+++..|.. +++.+.. ||. ..+++..|+.++|..|++......+ ...++..++.||+.+.| +.
T Consensus 243 ~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~---~~l~~e~l~~ia~~~~~-~~ 316 (450)
T PRK00149 243 AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEG---IDLPDEVLEFIAKNITS-NV 316 (450)
T ss_pred CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHcCcCC-CH
Confidence 345566666666665 6788888 996 5899999999999999999887642 23466778889988875 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++|..++......+... ...++.+.+.+++..
T Consensus 317 R~l~~~l~~l~~~~~~~----------------~~~it~~~~~~~l~~ 348 (450)
T PRK00149 317 RELEGALNRLIAYASLT----------------GKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHHHHHHHHHHhh----------------CCCCCHHHHHHHHHH
Confidence 77777777554333221 335777777777765
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.96 E-value=0.012 Score=56.75 Aligned_cols=39 Identities=10% Similarity=-0.130 Sum_probs=29.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+++-.. ....+.+|+.+++...
T Consensus 22 ~~pVLI~GE--~GtGK~~l---Ar~iH~~------------s~r~~~pfv~vnc~~~ 61 (329)
T TIGR02974 22 DRPVLIIGE--RGTGKELI---AARLHYL------------SKRWQGPLVKLNCAAL 61 (329)
T ss_pred CCCEEEECC--CCChHHHH---HHHHHHh------------cCccCCCeEEEeCCCC
Confidence 345899999 999 9999 8877211 3445678998887755
No 219
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.95 E-value=0.029 Score=52.92 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=86.5
Q ss_pred cCcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 148 RGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 148 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
+.++++.. -++.++....+ +..+....+.++|++|+ ++. ||++ ++.+.+.-.. .........|.
T Consensus 34 ~rWIgY~~-A~~~L~~L~~L---l~~P~~~Rmp~lLivG~--snnGKT~I---i~rF~~~hp~------~~d~~~~~~PV 98 (302)
T PF05621_consen 34 DRWIGYPR-AKEALDRLEEL---LEYPKRHRMPNLLIVGD--SNNGKTMI---IERFRRLHPP------QSDEDAERIPV 98 (302)
T ss_pred CCeecCHH-HHHHHHHHHHH---HhCCcccCCCceEEecC--CCCcHHHH---HHHHHHHCCC------CCCCCCccccE
Confidence 44555544 23333333332 33444455778999999 999 9999 5555322111 11122234566
Q ss_pred ccccCcccccccccccHHHHHHHhhhccccccccccccCCC--CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC
Q psy3629 227 TLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPK--NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA 304 (358)
Q Consensus 227 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~ 304 (358)
+.+..|+. .++....-++.+. +..++. ....+.-.++....+...+-+|+|||+-.++....
T Consensus 99 v~vq~P~~----p~~~~~Y~~IL~~----------lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-- 162 (302)
T PF05621_consen 99 VYVQMPPE----PDERRFYSAILEA----------LGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-- 162 (302)
T ss_pred EEEecCCC----CChHHHHHHHHHH----------hCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--
Confidence 66665554 3333333333333 222221 22234444556666778889999999999754311
Q ss_pred CCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc--cchhcCCCCCCcccc
Q psy3629 305 GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM--IDEALLRPGRLEVSE 357 (358)
Q Consensus 305 ~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~--iD~a~lr~GRfd~~~ 357 (358)
...|.+-.+|..| |.+-.-.++.+||-.-.+. -|+-+-+ ||+..+
T Consensus 163 -----~~qr~~Ln~LK~L-~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~ 209 (302)
T PF05621_consen 163 -----RKQREFLNALKFL-GNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFE 209 (302)
T ss_pred -----HHHHHHHHHHHHH-hhccCCCeEEeccHHHHHHhccCHHHHh--ccCCcc
Confidence 2233333444444 2222224555555422222 2555555 887654
No 220
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.94 E-value=0.0064 Score=51.06 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHhhcCCCCCceEEEEccchhhhhhcCC-CCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 275 TIILEAGPNSGLHIIIFDEIDAICKARGT-AGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 275 ~~~f~~a~~~~p~iif~DeiD~~~~~r~~-~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
+..+..+....|.+|++||+..+...... .+.......+.+..|+..+.. .++.+|++++.+...
T Consensus 75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~vv~~~~~~~~~ 140 (165)
T cd01120 75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK----GGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc----CCceEEEEEecCCcc
Confidence 34566777889999999999999865321 011111233445555555442 345666666655543
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=95.92 E-value=0.054 Score=49.28 Aligned_cols=78 Identities=10% Similarity=0.012 Sum_probs=57.2
Q ss_pred CeEEEEecCCCCCcc---hhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 9 NILVIGMTNRRDMID---EALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD---~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
.++|++++..|..++ +.+.+..++...+.++.|+.++|.++++....... ...++..++.|+++++| +.+.+.
T Consensus 126 ~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~---l~l~~~v~~~L~~~~~~-d~r~l~ 201 (229)
T PRK06893 126 TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG---IELSDEVANFLLKRLDR-DMHTLF 201 (229)
T ss_pred cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccC-CHHHHH
Confidence 355667777788775 78888344567999999999999999998776432 23466778889998875 666666
Q ss_pred HHHHH
Q psy3629 86 GLVRA 90 (358)
Q Consensus 86 ~l~~~ 90 (358)
.++..
T Consensus 202 ~~l~~ 206 (229)
T PRK06893 202 DALDL 206 (229)
T ss_pred HHHHH
Confidence 66654
No 222
>PRK08116 hypothetical protein; Validated
Probab=95.91 E-value=0.0025 Score=59.54 Aligned_cols=24 Identities=25% Similarity=0.163 Sum_probs=19.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
..+++|+|+ ||+ ||.| |.++...+
T Consensus 114 ~~gl~l~G~--~GtGKThL---a~aia~~l 138 (268)
T PRK08116 114 NVGLLLWGS--VGTGKTYL---AACIANEL 138 (268)
T ss_pred CceEEEECC--CCCCHHHH---HHHHHHHH
Confidence 357999999 999 9999 88884443
No 223
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.79 E-value=0.0038 Score=57.50 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=19.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
..+++|+|+ ||+ ||.| +.++...+
T Consensus 99 ~~~~~l~G~--~GtGKThL---a~aia~~l 123 (244)
T PRK07952 99 IASFIFSGK--PGTGKNHL---AAAICNEL 123 (244)
T ss_pred CceEEEECC--CCCCHHHH---HHHHHHHH
Confidence 357999999 999 9999 88884433
No 224
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.78 E-value=0.02 Score=55.28 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=37.5
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC---------CCC--CCCCEEEEEecCCcc-ccchhcCCCCCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD---------GVE--RLNNILVIGMTNRRD-MIDEALLRPGRL 353 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld---------~~~--~~~~v~vi~aTn~~~-~iD~a~lr~GRf 353 (358)
.-+||+|||+.+-+. +.+.||..|+ |.. ...++++|+|+|-.+ .+.++++. ||
T Consensus 132 ~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf 196 (337)
T TIGR02030 132 RGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RF 196 (337)
T ss_pred CCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hc
Confidence 368999999997332 3344555443 321 123588888888555 58889999 99
Q ss_pred cccc
Q psy3629 354 EVSE 357 (358)
Q Consensus 354 d~~~ 357 (358)
.+++
T Consensus 197 ~l~i 200 (337)
T TIGR02030 197 GLHA 200 (337)
T ss_pred ceEE
Confidence 8753
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.67 E-value=0.021 Score=57.99 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=38.0
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC--C-----C----CCCCEEEEEecCCcc--------------
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG--V-----E----RLNNILVIGMTNRRD-------------- 341 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~--~-----~----~~~~v~vi~aTn~~~-------------- 341 (358)
-++|+||++.+- ..+++.|++-|+. + . -..++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~ 362 (506)
T PRK09862 296 GVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPE 362 (506)
T ss_pred CEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHH
Confidence 489999997742 2455666665531 1 1 113589999999753
Q ss_pred -------ccchhcCCCCCCcccc
Q psy3629 342 -------MIDEALLRPGRLEVSE 357 (358)
Q Consensus 342 -------~iD~a~lr~GRfd~~~ 357 (358)
.|..++|- |||+++
T Consensus 363 ~~~~Y~~~ls~plLD--RfdL~v 383 (506)
T PRK09862 363 QTLRYLNRLSGPFLD--RFDLSL 383 (506)
T ss_pred HHHHHHhhCCHhHHh--hccEEE
Confidence 47778888 999864
No 226
>PRK12377 putative replication protein; Provisional
Probab=95.67 E-value=0.0058 Score=56.42 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=19.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
..+++|+|| ||+ ||.| |.++...
T Consensus 101 ~~~l~l~G~--~GtGKThL---a~AIa~~ 124 (248)
T PRK12377 101 CTNFVFSGK--PGTGKNHL---AAAIGNR 124 (248)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHHHH
Confidence 467999999 999 9999 8888443
No 227
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.65 E-value=0.0028 Score=63.56 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=17.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
...+++||+ +|+ ||.| +.++..
T Consensus 141 ~npl~i~G~--~G~GKTHL---l~Ai~~ 163 (450)
T PRK14087 141 YNPLFIYGE--SGMGKTHL---LKAAKN 163 (450)
T ss_pred cCceEEECC--CCCcHHHH---HHHHHH
Confidence 345899999 999 9999 777743
No 228
>KOG1514|consensus
Probab=95.59 E-value=0.082 Score=54.75 Aligned_cols=135 Identities=10% Similarity=0.079 Sum_probs=71.2
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
..+.+.|- ||+ ||.. +..+.+.+...-+. .....+.++.+++-.+. +..+..-.+.++....+
T Consensus 423 ~~mYIsGv--PGtGKT~t---V~~Vm~~Lq~~s~~-----~e~p~f~yveINgm~l~----~~~~~Y~~I~~~lsg~~-- 486 (767)
T KOG1514|consen 423 SCMYISGV--PGTGKTAT---VLEVMKELQTSSAQ-----KELPKFDYVEINGLRLA----SPREIYEKIWEALSGER-- 486 (767)
T ss_pred eeEEEecC--CCCCceeh---HHHHHHHHHHHHhh-----cCCCCccEEEEcceeec----CHHHHHHHHHHhcccCc--
Confidence 35667777 999 9987 65553333222111 22245666777655552 22222211111111111
Q ss_pred ccccccCCCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
+... .+=.+.+.=|...+ ...||||+|||+|.|+..+ .-|+-.|+.+.--- ..+++|||-+
T Consensus 487 ~~~~------~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~----------QdVlYn~fdWpt~~--~sKLvvi~Ia 548 (767)
T KOG1514|consen 487 VTWD------AALEALNFRFTVPKPKRSTTVVLIDELDILVTRS----------QDVLYNIFDWPTLK--NSKLVVIAIA 548 (767)
T ss_pred ccHH------HHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc----------HHHHHHHhcCCcCC--CCceEEEEec
Confidence 0000 00012222255333 4677999999999999772 23555555554422 2479999999
Q ss_pred CCccccchhcC
Q psy3629 338 NRRDMIDEALL 348 (358)
Q Consensus 338 n~~~~iD~a~l 348 (358)
|.-|....-+.
T Consensus 549 NTmdlPEr~l~ 559 (767)
T KOG1514|consen 549 NTMDLPERLLM 559 (767)
T ss_pred ccccCHHHHhc
Confidence 99888665543
No 229
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.43 E-value=0.064 Score=51.76 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
+..+........--|++||++|.+-.. .-|.||+-|+...+ ++++|.+|++|+.|-|-+.
T Consensus 97 ~~~~~~~~~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp~--~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 97 TEKLYEHARLGGAKVVWLPDAALLTDA-------------AANALLKTLEEPPE--NTWFFLACREPARLLATLR 156 (334)
T ss_pred HHHHhhccccCCceEEEEcchHhhCHH-------------HHHHHHHHhcCCCC--CeEEEEEECChhhChHHHH
Confidence 444566676777789999999998433 35899999996544 7888889999999988876
No 230
>PRK04132 replication factor C small subunit; Provisional
Probab=95.39 E-value=0.009 Score=63.96 Aligned_cols=49 Identities=27% Similarity=0.305 Sum_probs=38.7
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.-|+||||+|.+-.. ..+.||..|+...+ ++.+|++||.+..|-+++..
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEep~~--~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEMFSS--NVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhCCCC--CeEEEEEeCChhhCchHHhh
Confidence 369999999998322 25678888886554 78899999999999888764
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=95.37 E-value=0.015 Score=54.05 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=17.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
...++++|| ||+ ||.+ +.++
T Consensus 102 ~~~v~l~Gp--~GtGKThL---a~al 122 (259)
T PRK09183 102 NENIVLLGP--SGVGKTHL---AIAL 122 (259)
T ss_pred CCeEEEEeC--CCCCHHHH---HHHH
Confidence 456899999 999 9999 8777
No 232
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.037 Score=53.08 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 276 IILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 276 ~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.+...+....--|++||++|.+-.. .-|.||+.|+...+ ++++|.+|++|+.|-|.++.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEEPp~--~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEA-------------AANALLKTLEEPRP--NTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHH-------------HHHHHHHHhcCCCC--CeEEEEEECChHhCchHHHh
Confidence 3455566666679999999998432 35899999996554 78888899999999888763
No 233
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.36 E-value=0.022 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.111 Sum_probs=18.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
+..++|++|| ||+ ||++ |+++..-+
T Consensus 21 G~h~lLl~Gp--pGtGKTml---A~~l~~lL 46 (206)
T PF01078_consen 21 GGHHLLLIGP--PGTGKTML---ARRLPSLL 46 (206)
T ss_dssp CC--EEEES---CCCTHHHH---HHHHHHCS
T ss_pred CCCCeEEECC--CCCCHHHH---HHHHHHhC
Confidence 4578999999 999 9999 98886544
No 234
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.31 E-value=0.016 Score=55.58 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=56.2
Q ss_pred ccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC----CCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG----GNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~----~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
+.+++-......|.+...+-...+...+.+|++|=+-++.+.-...+ ...+...|.++++|..|.+.-...++.+|
T Consensus 107 ~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI 186 (325)
T cd00983 107 LDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVI 186 (325)
T ss_pred HHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34444333345778877777777888999999999999987422111 11123467888888888887555677777
Q ss_pred EecCCcccc
Q psy3629 335 GMTNRRDMI 343 (358)
Q Consensus 335 ~aTn~~~~i 343 (358)
.|..-.+.+
T Consensus 187 ~tNQvr~~i 195 (325)
T cd00983 187 FINQLREKI 195 (325)
T ss_pred EEEcccccc
Confidence 765544444
No 235
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.24 E-value=0.17 Score=49.69 Aligned_cols=103 Identities=22% Similarity=0.192 Sum_probs=70.0
Q ss_pred CeEEEEecCCCC---CcchhhcCCCCCc-eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC--HH
Q psy3629 9 NILVIGMTNRRD---MIDEALLRPGRLE-LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS--GA 82 (358)
Q Consensus 9 ~V~vI~aTN~p~---~LD~Al~R~GRfd-~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s--ga 82 (358)
++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..++++..++.-. .....++..++.+++.+.+.+ ..
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r 249 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDAR 249 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHH
Confidence 788999988764 57777766 664 6789999999999999998875321 012335566777888775433 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 83 ELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 83 di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
..-.+|..|...+..+ +...|+.+|+.+|+..
T Consensus 250 ~a~~ll~~a~~~a~~~---------------~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 250 VAIDLLRRAGLIAERE---------------GSRKVTEEDVRKAYEK 281 (394)
T ss_pred HHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHH
Confidence 3345666665554433 2346888999888877
No 236
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.20 E-value=0.078 Score=56.19 Aligned_cols=39 Identities=10% Similarity=-0.033 Sum_probs=28.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|+.|+ +|| |+.+ |+++-.. +...+.+|+.+++...
T Consensus 399 ~~pVLI~GE--~GTGK~~l---A~~ih~~------------s~r~~~~~v~i~c~~~ 438 (686)
T PRK15429 399 DSTVLILGE--TGTGKELI---ARAIHNL------------SGRNNRRMVKMNCAAM 438 (686)
T ss_pred CCCEEEECC--CCcCHHHH---HHHHHHh------------cCCCCCCeEEEecccC
Confidence 345999999 999 9999 9888321 3345678888877665
No 237
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.18 E-value=0.031 Score=48.59 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=19.9
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhh
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~ 299 (358)
+..+...+....|.+|++|++-.+..
T Consensus 84 ~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 84 IQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 34455555667899999999999865
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.01 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=21.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
...+++|+|| ||+ ||.| |.+++..+
T Consensus 104 ~~~nl~l~G~--~G~GKThL---a~Ai~~~l 129 (254)
T COG1484 104 RGENLVLLGP--PGVGKTHL---AIAIGNEL 129 (254)
T ss_pred cCCcEEEECC--CCCcHHHH---HHHHHHHH
Confidence 4678999999 999 9999 88885544
No 239
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.094 Score=50.20 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=43.1
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...+....--|++||++|.+-.. .-|.||+.|+.... ++++|..|++|+.|-|.+..
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp~--~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNES-------------ASNALLKTLEEPAP--NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred hhCcccCCceEEEecchhhhCHH-------------HHHHHHHHhcCCCC--CeEEEEEECChhhChHHHHh
Confidence 34444555679999999998432 35889999996554 78888889999988887764
No 240
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.11 Score=49.71 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=42.3
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
........--|++||++|.+-.. --|.||+-|+...+ ++++|.+|++|+.|-|.+.-
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp~--~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINRA-------------ACNALLKTLEEPSP--GRYLWLISAQPARLPATIRS 162 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhhCCCC--CCeEEEEECChhhCchHHHh
Confidence 33444445569999999998332 35889999996554 77888888999999888764
No 241
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.01 E-value=0.1 Score=46.83 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=55.3
Q ss_pred CeEEEEecCCCCCcc---hhhcCCCCC--ceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHH
Q psy3629 9 NILVIGMTNRRDMID---EALLRPGRL--ELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAE 83 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD---~Al~R~GRf--d~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgad 83 (358)
..+|+.++..+..++ +.+.+ || ...|.++.|+.+++..+++.+..... ...++..++.|+..+. -+.++
T Consensus 124 ~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~-gn~r~ 197 (226)
T TIGR03420 124 GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGS-RDMGS 197 (226)
T ss_pred CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcc-CCHHH
Confidence 344544444554443 67776 66 47899999999999999998776432 2335566788888644 58899
Q ss_pred HHHHHHHHHHH
Q psy3629 84 LEGLVRAAQSC 94 (358)
Q Consensus 84 i~~l~~~A~~~ 94 (358)
+.++++.+...
T Consensus 198 L~~~l~~~~~~ 208 (226)
T TIGR03420 198 LMALLDALDRA 208 (226)
T ss_pred HHHHHHHHHHH
Confidence 99998876543
No 242
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.01 E-value=0.068 Score=47.67 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=35.4
Q ss_pred chhHHHHHHhhcCCCCC-ceEEEEccchhhh-hhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 269 TSEFLCTIILEAGPNSG-LHIIIFDEIDAIC-KARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~-p~iif~DeiD~~~-~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
.+...+..+++...+.. ..||+|||+|.+. ..+ ....++..|.+.++......++.+|.++...
T Consensus 101 ~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 101 DSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp G-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 44566677777766543 3899999999998 332 1245566666666664434454444444433
No 243
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.96 E-value=0.095 Score=50.56 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=59.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++++|.+||.++.+.+++.+ |+ ..++++.|+.++...+++..++..+ ...++..+..+++.+.| +.+.+.+.
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g---~~i~~~a~~~l~~~~~g-~~~~a~~~ 218 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEG---IKIEDEALELIARAADG-SLRDALSL 218 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-ChHHHHHH
Confidence 467888889999999999988 88 5889999999999999998887642 22345667778888776 66666666
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++.+.
T Consensus 219 lekl~ 223 (355)
T TIGR02397 219 LDQLI 223 (355)
T ss_pred HHHHH
Confidence 65544
No 244
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.93 E-value=0.06 Score=51.48 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=38.6
Q ss_pred cCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 280 AGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 280 ~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.......-|++||++|.+-.. .-|.||..|+... +. ++|..|++|+.|=|.+..
T Consensus 119 ~p~~~~~kVvII~~ae~m~~~-------------aaNaLLK~LEEPp--~~-~fILi~~~~~~Ll~TI~S 172 (314)
T PRK07399 119 PPLEAPRKVVVIEDAETMNEA-------------AANALLKTLEEPG--NG-TLILIAPSPESLLPTIVS 172 (314)
T ss_pred CcccCCceEEEEEchhhcCHH-------------HHHHHHHHHhCCC--CC-eEEEEECChHhCcHHHHh
Confidence 334466789999999987322 3578888888665 23 556677789999888764
No 245
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.11 Score=48.87 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=43.0
Q ss_pred HhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
+.........-|++||++|.+-.. .-|.||+-|+.... ++++|..|++++.|-|.++.
T Consensus 87 ~~~~p~e~~~kv~ii~~ad~mt~~-------------AaNaLLK~LEEPp~--~~~fiL~~~~~~~ll~TI~S 144 (290)
T PRK05917 87 IWIHPYESPYKIYIIHEADRMTLD-------------AISAFLKVLEDPPQ--HGVIILTSAKPQRLPPTIRS 144 (290)
T ss_pred HhhCccCCCceEEEEechhhcCHH-------------HHHHHHHHhhcCCC--CeEEEEEeCChhhCcHHHHh
Confidence 344455566679999999998433 35889999996554 78888888889888887653
No 246
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.82 E-value=0.031 Score=57.28 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=29.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+++-..+...... .....+.+|+.+++..+
T Consensus 242 ~~pVLI~GE--~GTGKe~~---A~~IH~~~~~~~~~----~S~r~~~pfv~inCaal 289 (538)
T PRK15424 242 SAAVLIQGE--TGTGKELA---AQAIHREYFARHDA----RQGKKSHPFVAVNCGAI 289 (538)
T ss_pred CCcEEEECC--CCCCHHHH---HHHHHHhhcccccc----cCccCCCCeEEeecccC
Confidence 346999999 999 9999 98883211000000 02335678898887765
No 247
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.77 E-value=0.081 Score=47.90 Aligned_cols=19 Identities=16% Similarity=-0.041 Sum_probs=17.0
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.-+|+||+ ||+ ||.+ |+.+
T Consensus 13 ~~~liyG~--~G~GKtt~---a~~~ 32 (220)
T TIGR01618 13 NMYLIYGK--PGTGKTST---IKYL 32 (220)
T ss_pred cEEEEECC--CCCCHHHH---HHhc
Confidence 44999999 999 9999 8888
No 248
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.74 E-value=0.038 Score=53.14 Aligned_cols=38 Identities=11% Similarity=-0.060 Sum_probs=28.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..+|++|+ +|| |+.+ |+.+-.. ....+.+|+.+++...
T Consensus 30 ~pVlI~GE--~GtGK~~l---A~~iH~~------------s~r~~~pfv~v~c~~~ 68 (326)
T PRK11608 30 KPVLIIGE--RGTGKELI---ASRLHYL------------SSRWQGPFISLNCAAL 68 (326)
T ss_pred CCEEEECC--CCCcHHHH---HHHHHHh------------CCccCCCeEEEeCCCC
Confidence 45899999 999 9999 8877210 3345568888887765
No 249
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=94.74 E-value=0.04 Score=57.87 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=28.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..+|++|+ +|| |+.+ |+++-.. ....+.+|+.+++...
T Consensus 349 ~pvli~Ge--~GtGK~~~---A~~ih~~------------s~r~~~pfv~vnc~~~ 387 (638)
T PRK11388 349 FPVLLCGE--EGVGKALL---AQAIHNE------------SERAAGPYIAVNCQLY 387 (638)
T ss_pred CCEEEECC--CCcCHHHH---HHHHHHh------------CCccCCCeEEEECCCC
Confidence 34999999 999 9999 9888221 2334568888887665
No 250
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=94.62 E-value=0.052 Score=54.78 Aligned_cols=120 Identities=18% Similarity=0.203 Sum_probs=69.6
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-----cccccccHHHHHHHhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-----RGFIGFSLLQRKWAEL 251 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~s~~~~~~~~~ 251 (358)
....+|+.|. .|| |..+ |+++-.. .+..+-||+.++|..+- +.+.|....+ +-.+
T Consensus 267 tdstVLi~GE--SGTGKElf---A~~IH~~------------S~R~~~PFIaiNCaAiPe~LlESELFGye~GA--FTGA 327 (560)
T COG3829 267 TDSTVLILGE--SGTGKELF---ARAIHNL------------SPRANGPFIAINCAAIPETLLESELFGYEKGA--FTGA 327 (560)
T ss_pred CCCcEEEecC--CCccHHHH---HHHHHhc------------CcccCCCeEEEecccCCHHHHHHHHhCcCCcc--cccc
Confidence 3567999999 999 9998 7776221 66778899999987661 2333433333 0000
Q ss_pred hccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-----CC
Q psy3629 252 SLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-----VE 326 (358)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-----~~ 326 (358)
.+-+ =+.+ |+.|.... ||+|||-.+--. +-..||.-|+. +.
T Consensus 328 ~~~G---K~Gl---------------fE~A~gGT---LFLDEIgempl~-------------LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 328 SKGG---KPGL---------------FELANGGT---LFLDEIGEMPLP-------------LQAKLLRVLQEKEIERVG 373 (560)
T ss_pred ccCC---CCcc---------------eeeccCCe---EEehhhccCCHH-------------HHHHHHHHHhhceEEecC
Confidence 0000 0112 66665555 999999876322 33455555542 21
Q ss_pred C----CCCEEEEEecCCccccchhcCCCCCC
Q psy3629 327 R----LNNILVIGMTNRRDMIDEALLRPGRL 353 (358)
Q Consensus 327 ~----~~~v~vi~aTn~~~~iD~a~lr~GRf 353 (358)
+ .-+|=||+|||+.= .-.+..|||
T Consensus 374 ~t~~~~vDVRIIAATN~nL---~~~i~~G~F 401 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNL---EKMIAEGTF 401 (560)
T ss_pred CCCceeeEEEEEeccCcCH---HHHHhcCcc
Confidence 1 13588999999852 133445555
No 251
>KOG0990|consensus
Probab=94.57 E-value=0.072 Score=50.42 Aligned_cols=51 Identities=22% Similarity=0.318 Sum_probs=32.8
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
...+-.|++||.|++... .-|+|=..+..+.. ++=+..-.|.|..+-||+.
T Consensus 129 ~~~fKlvILDEADaMT~~-------------AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~q 179 (360)
T KOG0990|consen 129 HAAFKLVILDEADAMTRD-------------AQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQ 179 (360)
T ss_pred cCceeEEEecchhHhhHH-------------HHHHHHHHHHHhcc--ceEEEEeccChhhcCchhh
Confidence 347889999999998543 11233333333333 2333466799999999996
No 252
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=94.56 E-value=0.07 Score=44.36 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.4
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++|+ ||+ |+.+ |+.+
T Consensus 22 ~pvli~GE--~GtGK~~~---A~~l 41 (138)
T PF14532_consen 22 SPVLITGE--PGTGKSLL---ARAL 41 (138)
T ss_dssp S-EEEECC--TTSSHHHH---HHCC
T ss_pred CcEEEEcC--CCCCHHHH---HHHH
Confidence 44899999 999 9999 8888
No 253
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.52 E-value=0.04 Score=49.10 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 272 FLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 272 ~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
..+..+.+.+.+..|++|+||-|.+++..- ..+.. ....+.+..++..|..+-...++.+|.|..-....+
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~~~~-~~~~~-~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~ 154 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALYRLE-LSDDR-ISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVN 154 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHhHHH-hCCcc-HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecC
Confidence 346666666666789999999999987431 11111 111223334444444443345677777654333333
No 254
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.48 E-value=0.029 Score=50.79 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=27.2
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
..+|+||+++.+.+.. .....+-.+++. +...++-+|+.+...|..+.
T Consensus 98 ~DlL~iDDi~~l~~~~--------~~q~~lf~l~n~---~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQ--------RTQEELFHLFNR---LIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp SSEEEEETGGGGTTHH--------HHHHHHHHHHHH---HHHTTSEEEEEESS-TTTTT
T ss_pred CCEEEEecchhhcCch--------HHHHHHHHHHHH---HHhhCCeEEEEeCCCCcccc
Confidence 3689999999996552 112223333333 32333456777767777665
No 255
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.40 E-value=0.061 Score=54.97 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=29.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+++-.. ....+.+|+.+++...
T Consensus 210 ~~pVlI~Ge--~GtGK~~~---A~~ih~~------------s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 210 DLNVLILGE--TGVGKELV---ARAIHAA------------SPRADKPLVYLNCAAL 249 (509)
T ss_pred CCcEEEECC--CCccHHHH---HHHHHHh------------CCcCCCCeEEEEcccC
Confidence 446999999 999 9999 8888321 3345668888887765
No 256
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.35 E-value=0.29 Score=44.66 Aligned_cols=76 Identities=13% Similarity=-0.029 Sum_probs=56.2
Q ss_pred eEEEEecCCCCC---cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHH
Q psy3629 10 ILVIGMTNRRDM---IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAEL 84 (358)
Q Consensus 10 V~vI~aTN~p~~---LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi 84 (358)
-+++.+++.|.. +.|.+.. |+. ..+++..|+.++|.++++....... -..++.-++.|+++++| +.+.+
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~-d~r~l 206 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDR-EMRTL 206 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcC-CHHHH
Confidence 355555555665 5789998 987 8999999999999999988665432 23466778889998885 67777
Q ss_pred HHHHHHH
Q psy3629 85 EGLVRAA 91 (358)
Q Consensus 85 ~~l~~~A 91 (358)
..++...
T Consensus 207 ~~~l~~l 213 (235)
T PRK08084 207 FMTLDQL 213 (235)
T ss_pred HHHHHHH
Confidence 7776653
No 257
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.35 E-value=0.054 Score=55.65 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=29.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+++-.. ....+.+|+.+++..+
T Consensus 219 ~~pvli~Ge--~GtGK~~l---A~~ih~~------------s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 219 NSTVLLRGE--SGTGKELI---AKAIHYL------------SPRAKRPFVKVNCAAL 258 (534)
T ss_pred CCCEEEECC--CCccHHHH---HHHHHHh------------CCCCCCCeEEeecCCC
Confidence 345899999 999 9999 8888321 3345678898888765
No 258
>PRK09087 hypothetical protein; Validated
Probab=94.35 E-value=0.16 Score=46.15 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=54.7
Q ss_pred CCCCeEEEEecCCCCCc---chhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 6 RLNNILVIGMTNRRDMI---DEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~L---D~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
..++.+||+++..|..+ .+.++. ||. ..+++..|+.+.|.++++..++... ...++..++.|++...| +
T Consensus 115 ~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~---~~l~~ev~~~La~~~~r-~ 188 (226)
T PRK09087 115 QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQ---LYVDPHVVYYLVSRMER-S 188 (226)
T ss_pred hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhh-h
Confidence 34566777777666533 577877 886 8899999999999999999987642 23466778888988773 3
Q ss_pred HHHHHHHH
Q psy3629 81 GAELEGLV 88 (358)
Q Consensus 81 gadi~~l~ 88 (358)
.+.+..++
T Consensus 189 ~~~l~~~l 196 (226)
T PRK09087 189 LFAAQTIV 196 (226)
T ss_pred HHHHHHHH
Confidence 34443333
No 259
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.32 E-value=0.075 Score=54.44 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=29.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|+ +|| |+.+ |+.+-.. ....+.+|+.+++..+
T Consensus 235 ~~pVLI~GE--~GTGKe~l---A~~IH~~------------S~r~~~pfv~inC~~l 274 (526)
T TIGR02329 235 DATVLILGE--SGTGKELV---AQAIHQL------------SGRRDFPFVAINCGAI 274 (526)
T ss_pred CCcEEEECC--CCcCHHHH---HHHHHHh------------cCcCCCCEEEeccccC
Confidence 346999999 999 9999 8888211 3456778998887765
No 260
>PRK06620 hypothetical protein; Validated
Probab=94.31 E-value=0.23 Score=44.70 Aligned_cols=78 Identities=9% Similarity=0.113 Sum_probs=58.3
Q ss_pred CCCCeEEEEecCCCCC--cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 6 RLNNILVIGMTNRRDM--IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~--LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
..++.+||+++..|.. + |+++. |+. ..+++..|+.+.+..+++....... ...++.-++.|++.+.| +.
T Consensus 111 e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~-d~ 183 (214)
T PRK06620 111 EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPR-EY 183 (214)
T ss_pred hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccC-CH
Confidence 4566788888877765 5 77877 885 3799999999999999988876532 23466778889988875 66
Q ss_pred HHHHHHHHH
Q psy3629 82 AELEGLVRA 90 (358)
Q Consensus 82 adi~~l~~~ 90 (358)
+.+.+++..
T Consensus 184 r~l~~~l~~ 192 (214)
T PRK06620 184 SKIIEILEN 192 (214)
T ss_pred HHHHHHHHH
Confidence 666666664
No 261
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=94.27 E-value=0.12 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.9
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
....++|+.|+ .|+ ||.+ ++++.+-+
T Consensus 36 P~iggvLI~G~--kGtaKSt~---~Rala~LL 62 (423)
T COG1239 36 PQIGGALIAGE--KGTAKSTL---ARALADLL 62 (423)
T ss_pred cccceeEEecC--CCccHHHH---HHHHHHhC
Confidence 34678999999 999 9999 88885433
No 262
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.24 Score=48.27 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=61.0
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|.+|+.++.+.+.+.. |+ ..++|+.|+.++..++++..++..+ ...++..++.++..+.| +.+++.+
T Consensus 147 ~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g---~~i~~~al~~ia~~s~G-~~R~al~ 219 (363)
T PRK14961 147 PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKES---IDTDEYALKLIAYHAHG-SMRDALN 219 (363)
T ss_pred CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3467778888889999999887 77 7899999999999999998877642 22456677888988876 6777777
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
.+..+.
T Consensus 220 ~l~~~~ 225 (363)
T PRK14961 220 LLEHAI 225 (363)
T ss_pred HHHHHH
Confidence 766553
No 263
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.24 E-value=0.29 Score=49.86 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
...+++|.+|+.++.++++++. |. ..++|..++.++...+++..++... ...++..++.++..+.| +.+++.+
T Consensus 156 p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~eg---i~ie~eAL~~Ia~~s~G-slR~al~ 228 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQEN---LKTDIEALRIIAYKSEG-SARDAVS 228 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568888889999999999988 77 6889999999999999998887642 23355678889999887 8888888
Q ss_pred HHHHHHH
Q psy3629 87 LVRAAQS 93 (358)
Q Consensus 87 l~~~A~~ 93 (358)
.++.+..
T Consensus 229 ~Ldkai~ 235 (507)
T PRK06645 229 ILDQAAS 235 (507)
T ss_pred HHHHHHH
Confidence 8887754
No 264
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.24 E-value=0.14 Score=47.75 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=49.9
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+..-+.++|+ +|+ ||.+ |..+..+.. . .......-++.+... .........++...+..
T Consensus 17 ~~~~~v~I~G~--~G~GKT~L---A~~~~~~~~--~------~~~f~~v~wv~~~~~------~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 17 NEVRVVAIVGM--GGIGKTTL---ARQVARDLR--I------KNRFDGVIWVSLSKN------PSLEQLLEQILRQLGEP 77 (287)
T ss_dssp TSSEEEEEEES--TTSSHHHH---HHHHHCHHH--H------CCCCTEEEEEEEES-------SCCHHHHHHHHHHHTCC
T ss_pred CCeEEEEEEcC--CcCCccee---eeecccccc--c------ccccccccccccccc------ccccccccccccccccc
Confidence 34666899999 999 9999 877632210 0 011111112222111 11122233344443333
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
.-+. ....+.+.....+.+..+.. +++|+||+++..
T Consensus 78 ~~~~-----~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~ 113 (287)
T PF00931_consen 78 DSSI-----SDPKDIEELQDQLRELLKDK-RCLLVLDDVWDE 113 (287)
T ss_dssp -STS-----SCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SH
T ss_pred cccc-----ccccccccccccchhhhccc-cceeeeeeeccc
Confidence 2111 12344555777777776666 899999998765
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.15 E-value=0.11 Score=50.04 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=36.9
Q ss_pred cCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 280 AGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 280 ~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.......-|+++|++|.+-.. ..|.||+.|+.... ++.+|.+|++++.+-+.+.+
T Consensus 108 ~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 108 TSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred CcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH
Confidence 333455569999999998333 24556666665532 46677788899988888654
No 266
>PRK06921 hypothetical protein; Provisional
Probab=94.08 E-value=0.049 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.6
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..+++|+|| ||+ ||.| +.++..
T Consensus 117 ~~~l~l~G~--~G~GKThL---a~aia~ 139 (266)
T PRK06921 117 KNSIALLGQ--PGSGKTHL---LTAAAN 139 (266)
T ss_pred CCeEEEECC--CCCcHHHH---HHHHHH
Confidence 567999999 999 9999 888743
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.99 E-value=0.36 Score=43.54 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=63.2
Q ss_pred CCCeEEEEecCCCC---CcchhhcCCCCC--ceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRD---MIDEALLRPGRL--ELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~---~LD~Al~R~GRf--d~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..++|.+++.+. .+.+.+.. || ...++++.|+.+++..+++.+..... ...++.-++.|++.++| +.
T Consensus 120 ~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~g-n~ 193 (227)
T PRK08903 120 HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRR-DM 193 (227)
T ss_pred cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccC-CH
Confidence 33433444444322 34566765 76 47999999999889999987765542 23455677888886664 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhh
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALE 128 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~ 128 (358)
.++.++++.-...+... ...++...+.+++.
T Consensus 194 ~~l~~~l~~l~~~~~~~----------------~~~i~~~~~~~~l~ 224 (227)
T PRK08903 194 PSLMALLDALDRYSLEQ----------------KRPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHh
Confidence 88888877643333222 34577766666654
No 268
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=93.99 E-value=0.044 Score=54.57 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=28.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...++++|. +|+ |+.+ |+++-.. ......+|+.+++...
T Consensus 162 ~~~vli~ge--~g~gk~~~---a~~ih~~------------s~~~~~~~i~~~c~~~ 201 (441)
T PRK10365 162 EATVLIHGD--SGTGKELV---ARAIHAS------------SARSEKPLVTLNCAAL 201 (441)
T ss_pred CCeEEEEec--CCCCHHHH---HHHHHHc------------CCCCCCCeeeeeCCCC
Confidence 456899999 999 9998 8877221 3345577888887765
No 269
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=93.99 E-value=0.056 Score=48.18 Aligned_cols=56 Identities=25% Similarity=0.375 Sum_probs=35.1
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC---------CCCEEEEEecCCcccc-chhcCCCCCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER---------LNNILVIGMTNRRDMI-DEALLRPGRL 353 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~---------~~~v~vi~aTn~~~~i-D~a~lr~GRf 353 (358)
-||.+||++.+-.. ..+++.+-+-...|.+.. ....++|||||..+.| |+.-=| ||
T Consensus 97 ~iveldEl~~~~k~---------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf 162 (198)
T PF05272_consen 97 WIVELDELDGLSKK---------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF 162 (198)
T ss_pred HheeHHHHhhcchh---------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe--EE
Confidence 58999999997522 234554444344443321 1347899999999955 555666 65
No 270
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.32 Score=49.17 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=56.1
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+++|++||.|..+++++++ |+ ..++|..|+.++...+++......+ ...++..++.|++.+.| +.+.+-+.
T Consensus 146 ~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~eg---i~i~~eal~~Ia~~s~G-dlR~aln~ 218 (472)
T PRK14962 146 SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEG---IEIDREALSFIAKRASG-GLRDALTM 218 (472)
T ss_pred CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhCC-CHHHHHHH
Confidence 568888888889999999998 88 5899999999999999888776532 23356667888887765 44444444
Q ss_pred HH
Q psy3629 88 VR 89 (358)
Q Consensus 88 ~~ 89 (358)
+.
T Consensus 219 Le 220 (472)
T PRK14962 219 LE 220 (472)
T ss_pred HH
Confidence 44
No 271
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=93.97 E-value=0.09 Score=52.56 Aligned_cols=124 Identities=22% Similarity=0.251 Sum_probs=70.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
....||+.|. .|| |... |++|-.. .+...-||+.++++.+-.. +-+||.- ++
T Consensus 245 Sd~tVLi~GE--TGtGKElv---AraIH~~------------S~R~~kPfV~~NCAAlPes-LlESELF-------GH-- 297 (550)
T COG3604 245 SDSTVLIRGE--TGTGKELV---ARAIHQL------------SPRRDKPFVKLNCAALPES-LLESELF-------GH-- 297 (550)
T ss_pred CCCeEEEecC--CCccHHHH---HHHHHhh------------CcccCCCceeeeccccchH-HHHHHHh-------cc--
Confidence 3456999999 999 9998 8887221 6778889999998877211 1122211 11
Q ss_pred ccccccccC----CCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHH-HccCCCCCC---
Q psy3629 257 IDVKPFFFN----PKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLL-SKMDGVERL--- 328 (358)
Q Consensus 257 ~~~~~~~~~----~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL-~~ld~~~~~--- 328 (358)
.+.+|+- -.| -|+.|-... +|+|||-.+-.. .+..++.-|. .|++-+.+.
T Consensus 298 --eKGAFTGA~~~r~G--------rFElAdGGT---LFLDEIGelPL~---------lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 298 --EKGAFTGAINTRRG--------RFELADGGT---LFLDEIGELPLA---------LQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred --cccccccchhccCc--------ceeecCCCe---EechhhccCCHH---------HHHHHHHHHhhcceeecCCCcee
Confidence 2233222 111 166665554 999999876333 2222222211 123333332
Q ss_pred -CCEEEEEecCCccccchhcCCCCCC
Q psy3629 329 -NNILVIGMTNRRDMIDEALLRPGRL 353 (358)
Q Consensus 329 -~~v~vi~aTn~~~~iD~a~lr~GRf 353 (358)
-+|=||+||||= |-. ..|-|+|
T Consensus 356 kVDVRiIAATNRD--L~~-~V~~G~F 378 (550)
T COG3604 356 KVDVRVIAATNRD--LEE-MVRDGEF 378 (550)
T ss_pred EEEEEEEeccchh--HHH-HHHcCcc
Confidence 248899999982 232 2355666
No 272
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.97 E-value=0.32 Score=52.29 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhc--ccc-----ccccCchhhHHHHHHh-cCCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAK--MRS-----YKKLADDVNLKELAAL-TKNF 79 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~--~~~-----~~~~~~~~~l~~la~~-t~g~ 79 (358)
++|++|+|||.. .|+++++. || ..|.++.++.++..+|.+.++-. ... .....++.-++.+++. +..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 689999999987 59999999 99 57899999999999999988842 110 0111234445666653 3445
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
-.+.|++.++..+...+.+.+..... ....++.+++...+..
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~~~--------~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDKSL--------KHIEINGDNLHDYLGV 581 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCC--------ceeeecHHHHHHHhCC
Confidence 56778888888777776665433221 2346788888888764
No 273
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=93.96 E-value=0.087 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.4
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.++-..+||.|+ ||| |+.+ ++.+
T Consensus 489 iRgdihVLLvGD--PGTGKSqL---Ar~I 512 (915)
T PTZ00111 489 FRGIINVLLCGD--PGTAKSQL---LHYT 512 (915)
T ss_pred ccCCceEEEeCC--CCccHHHH---HHHH
Confidence 356677999999 999 9999 7777
No 274
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.95 E-value=0.088 Score=41.82 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.8
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.++|| ||+ ||.+ +..+.
T Consensus 1 I~i~G~--~G~GKS~l---~~~l~ 19 (107)
T PF00910_consen 1 IWIYGP--PGIGKSTL---AKELA 19 (107)
T ss_pred CEEECC--CCCCHHHH---HHHHH
Confidence 578999 999 9999 66653
No 275
>PRK08727 hypothetical protein; Validated
Probab=93.90 E-value=0.27 Score=44.79 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=50.2
Q ss_pred EEEEecCCCCCc---chhhcCCCCC--ceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 11 LVIGMTNRRDMI---DEALLRPGRL--ELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 11 ~vI~aTN~p~~L---D~Al~R~GRf--d~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
+|+.+.+.|..+ ++++.+ || ...++++.|+.++|.++++....... ...++..++.|++.+.| +...+.
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~r-d~r~~l 202 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGER-ELAGLV 202 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCC-CHHHHH
Confidence 444444467766 789998 87 46889999999999999998665431 23466778889988774 333333
Q ss_pred HHHH
Q psy3629 86 GLVR 89 (358)
Q Consensus 86 ~l~~ 89 (358)
++++
T Consensus 203 ~~L~ 206 (233)
T PRK08727 203 ALLD 206 (233)
T ss_pred HHHH
Confidence 3344
No 276
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=93.86 E-value=0.082 Score=52.90 Aligned_cols=39 Identities=15% Similarity=0.063 Sum_probs=27.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...++++|+ +|+ |+.+ |+.+-.. ....+.+|+.+++...
T Consensus 166 ~~~vli~Ge--~GtGK~~l---A~~ih~~------------s~~~~~~~~~i~c~~~ 205 (457)
T PRK11361 166 QASVLISGE--SGTGKELI---ARAIHYN------------SRRAKGPFIKVNCAAL 205 (457)
T ss_pred CcEEEEEcC--CCccHHHH---HHHHHHh------------CCCCCCCeEEEECCCC
Confidence 345899999 999 9999 8877211 3345567777776655
No 277
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.84 E-value=0.061 Score=56.13 Aligned_cols=19 Identities=5% Similarity=-0.153 Sum_probs=16.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.-++|+|| ||+ ||.+ ++.+
T Consensus 111 ~illL~GP--~GsGKTTl---~~~l 130 (637)
T TIGR00602 111 RILLITGP--SGCGKSTT---IKIL 130 (637)
T ss_pred cEEEEECC--CCCCHHHH---HHHH
Confidence 34899999 999 9998 7777
No 278
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.73 E-value=0.043 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=19.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
..+++|+|| ||+ ||.| +.++...
T Consensus 156 ~~gl~L~G~--~G~GKThL---a~Aia~~ 179 (306)
T PRK08939 156 VKGLYLYGD--FGVGKSYL---LAAIANE 179 (306)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHHHH
Confidence 578999999 999 9999 8888443
No 279
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.70 E-value=0.17 Score=49.56 Aligned_cols=128 Identities=15% Similarity=0.097 Sum_probs=70.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
.-++|.|| +|+ ||.+ +..+...+ ....+..-+.+...+.. -+|..+..+.|++..++....
T Consensus 138 ~ii~lvGp--tGvGKTTt---iakLA~~~-----------~~~~G~~~V~lit~D~~--R~ga~EqL~~~a~~~gv~~~~ 199 (374)
T PRK14722 138 GVFALMGP--TGVGKTTT---TAKLAARC-----------VMRFGASKVALLTTDSY--RIGGHEQLRIFGKILGVPVHA 199 (374)
T ss_pred cEEEEECC--CCCCHHHH---HHHHHHHH-----------HHhcCCCeEEEEecccc--cccHHHHHHHHHHHcCCceEe
Confidence 45889999 999 9988 55552211 11111111222222221 246667777778777655422
Q ss_pred ccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEEEEEec
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNILVIGMT 337 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aT 337 (358)
++.- ++-++. .... ....+|+||..-. . ..+..+.+.+..|.+... ...++|+-+|
T Consensus 200 ~~~~-----~~l~~~----l~~l--~~~DlVLIDTaG~-----~-------~~d~~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 200 VKDG-----GDLQLA----LAEL--RNKHMVLIDTIGM-----S-------QRDRTVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred cCCc-----ccHHHH----HHHh--cCCCEEEEcCCCC-----C-------cccHHHHHHHHHHhccCCCCeEEEEecCc
Confidence 2211 111221 2222 3457899997621 1 223446677777766543 3468999999
Q ss_pred CCccccchhcC
Q psy3629 338 NRRDMIDEALL 348 (358)
Q Consensus 338 n~~~~iD~a~l 348 (358)
+..+.++..+-
T Consensus 257 s~~~~l~evi~ 267 (374)
T PRK14722 257 SHGDTLNEVVQ 267 (374)
T ss_pred cChHHHHHHHH
Confidence 99999886654
No 280
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.60 E-value=0.14 Score=45.18 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=34.4
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
..++|+|||+..+++.|...+.. ....+ ++|++.- . .+.-|+.+|-+|..||+-+.+ ..+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~---~~~~~-~~l~~hR---h-~g~diiliTQ~~~~id~~ir~--lve~ 139 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKK---VPEII-EFLAQHR---H-YGWDIILITQSPSQIDKFIRD--LVEY 139 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-------HHH-HGGGGCC---C-TT-EEEEEES-GGGB-HHHHC--CEEE
T ss_pred CCcEEEEECChhhcCCCcccccc---chHHH-HHHHHhC---c-CCcEEEEEeCCHHHHhHHHHH--HHhe
Confidence 56899999999999998652211 12333 4444332 2 356799999999999997754 5443
No 281
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.57 E-value=0.37 Score=48.37 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCeEEEEecCCCC---CcchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHH
Q psy3629 8 NNILVIGMTNRRD---MIDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGA 82 (358)
Q Consensus 8 ~~V~vI~aTN~p~---~LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sga 82 (358)
+..+|+.+++.|. .+++.+.+ ||. ..+.++.|+.++|..|++....... ...++.-++.|+....+ +..
T Consensus 235 ~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~---~~l~~evl~~la~~~~~-dir 308 (445)
T PRK12422 235 GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS---IRIEETALDFLIEALSS-NVK 308 (445)
T ss_pred CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CHH
Confidence 4455555555565 46789998 996 7889999999999999999887652 23456667778887764 556
Q ss_pred HHHHHHHHHHHH-HHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 83 ELEGLVRAAQSC-AMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 83 di~~l~~~A~~~-a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++...+...+.. +... ....+++.++..+++..
T Consensus 309 ~L~g~l~~l~~~~a~~~--------------~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 309 SLLHALTLLAKRVAYKK--------------LSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHHHHHHHHHHHHH--------------hhCCCCCHHHHHHHHHH
Confidence 666665554322 2211 11335777888777765
No 282
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.56 E-value=0.023 Score=55.00 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=35.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHH
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQ 245 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 245 (358)
.-+++|+.|| ||| ||.+ |-++.. ......||..+.++++.+.-+.+||..
T Consensus 49 aGr~iLiaGp--pGtGKTAl---A~~ia~-------------eLG~~~PF~~isgSEiyS~e~kKTE~L 99 (398)
T PF06068_consen 49 AGRAILIAGP--PGTGKTAL---AMAIAK-------------ELGEDVPFVSISGSEIYSSEVKKTEAL 99 (398)
T ss_dssp TT-EEEEEE---TTSSHHHH---HHHHHH-------------HCTTTS-EEEEEGGGG-BTTC-HHHHH
T ss_pred cCcEEEEeCC--CCCCchHH---HHHHHH-------------HhCCCCCeeEcccceeeecccCchHHH
Confidence 4578999999 999 9999 888832 223458999999999977777777753
No 283
>PRK09354 recA recombinase A; Provisional
Probab=93.55 E-value=0.06 Score=52.05 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=47.8
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC---C-CCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA---G-GNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~---~-~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
...|.++..+-...+...+.+|++|=+-++.+.-.-. + ...+...|.++++|..|-+.-...++.+|.|.
T Consensus 121 ~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 121 DTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred CCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 3577777776667788899999999999998631111 1 12235568888888877776555567777764
No 284
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=93.55 E-value=0.047 Score=52.63 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=31.3
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC----CCC-------CCCEEEEEecCCcc-------------c
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG----VER-------LNNILVIGMTNRRD-------------M 342 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~----~~~-------~~~v~vi~aTn~~~-------------~ 342 (358)
-|++|||+|.+-.. ..+.|+..|+. +.. .-+.-|+||+|... .
T Consensus 123 GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~ 189 (331)
T PF00493_consen 123 GICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENIN 189 (331)
T ss_dssp SEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-
T ss_pred ceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcc
Confidence 58999999997432 23556666653 111 13578999999776 5
Q ss_pred cchhcCCCCCCccc
Q psy3629 343 IDEALLRPGRLEVS 356 (358)
Q Consensus 343 iD~a~lr~GRfd~~ 356 (358)
+++.+|- |||.-
T Consensus 190 l~~~LLS--RFDLi 201 (331)
T PF00493_consen 190 LPPPLLS--RFDLI 201 (331)
T ss_dssp S-CCCHC--C-SEE
T ss_pred cchhhHh--hcCEE
Confidence 8889999 99974
No 285
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.3 Score=48.25 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=52.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++++|.+|+.++.|.|.+++ |. ..++|+.|+.++..+++.... .. +......++..+.|..+.-++-+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~-------~~-~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD-------GV-DPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc-------CC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 355566666669999999998 87 799999999998877776321 12 34556788999999888766655
Q ss_pred HH
Q psy3629 88 VR 89 (358)
Q Consensus 88 ~~ 89 (358)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 44
No 286
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.51 E-value=0.26 Score=49.46 Aligned_cols=101 Identities=14% Similarity=0.131 Sum_probs=68.9
Q ss_pred CCCeEEEEecCCCCCc---chhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDMI---DEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~L---D~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..+||++.+.|..+ ++.+.. ||. ..+.+..||.+.|..|++....... ...++..++.||+...| +.
T Consensus 226 ~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~---~~l~~ev~~~Ia~~~~~-~~ 299 (440)
T PRK14088 226 SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEH---GELPEEVLNFVAENVDD-NL 299 (440)
T ss_pred cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHhcccc-CH
Confidence 3456666666677764 566777 774 5788999999999999998887532 23456668889988875 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++|..++..-...+.. ...+++.....++++.
T Consensus 300 R~L~g~l~~l~~~~~~----------------~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 300 RRLRGAIIKLLVYKET----------------TGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHHHHHHHHHHHHHH----------------hCCCCCHHHHHHHHHH
Confidence 7777777654322221 1345777777777765
No 287
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.43 E-value=0.28 Score=45.28 Aligned_cols=87 Identities=8% Similarity=0.094 Sum_probs=66.5
Q ss_pred hhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccc-cccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy3629 25 ALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY-KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKAT 103 (358)
Q Consensus 25 Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~-~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~ 103 (358)
.+.+ |+...++++..+.++-.+++...+...... ....++..++.|++.|.|.... |..+|..+...+..+
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~----- 249 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLE----- 249 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHc-----
Confidence 3555 888899999999999999999888754311 1124567889999999998655 999999988777654
Q ss_pred CccccChhhhhhhccCHHHHHHhhhc
Q psy3629 104 NKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 104 ~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+...++.+++..++..
T Consensus 250 ----------~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ----------EKREIGGEEVREVIAE 265 (269)
T ss_pred ----------CCCCCCHHHHHHHHHH
Confidence 3456888888888865
No 288
>PF05729 NACHT: NACHT domain
Probab=93.41 E-value=0.17 Score=42.50 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=16.7
Q ss_pred cCCCCCceEEEEccchhhhhh
Q psy3629 280 AGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 280 ~a~~~~p~iif~DeiD~~~~~ 300 (358)
.+....+++|+||-+|.+...
T Consensus 76 ~~~~~~~~llilDglDE~~~~ 96 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQ 96 (166)
T ss_pred HHHcCCceEEEEechHhcccc
Confidence 344567789999999999775
No 289
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.29 E-value=0.22 Score=44.61 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=36.3
Q ss_pred HHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
.+.++....+. .+.+|++|-+..++..-...........+.+..++..|..+-...++.||.|+....
T Consensus 92 ~~~~~~~~~~~-~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~ 159 (218)
T cd01394 92 AIQETETFADE-KVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYS 159 (218)
T ss_pred HHHHHHHHHhc-CCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEE
Confidence 44555554443 389999999999863211111111122334455555555553344677777655443
No 290
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.28 E-value=0.2 Score=53.33 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=50.9
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC----CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG----NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~----~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
...|..+..+-...++..|.+|+||-|.++++.....+. ..+...++++++|..|..+-...+|.+|.|-.-.+.+
T Consensus 121 ~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~ 200 (790)
T PRK09519 121 DTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI 200 (790)
T ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecC
Confidence 456777777666677788999999999999973222221 1124467778888888887555677777764333333
No 291
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.12 E-value=0.55 Score=48.58 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=60.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.|+.|.+.+++ |. ..++|..|+.++-...++..++..+ ...++..+..++..+.| +.++..+.
T Consensus 148 ~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~eg---i~i~~~al~~ia~~s~G-~~R~al~~ 220 (559)
T PRK05563 148 AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEG---IEYEDEALRLIARAAEG-GMRDALSI 220 (559)
T ss_pred CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467778888889999999988 77 5788999999999888888876542 22355667888988887 77777777
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 221 Ldq~~ 225 (559)
T PRK05563 221 LDQAI 225 (559)
T ss_pred HHHHH
Confidence 76654
No 292
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.04 E-value=0.23 Score=46.85 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=41.9
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.........-|++||++|.+-.. .-|.||+.|+.... ++++|.+|++++.|=|-+..
T Consensus 97 ~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEEPp~--~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 97 SQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIEEPQS--EIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred hhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcCCCC--CeEEEEEECChhhCchHHHH
Confidence 33344455579999999998433 35899999997554 67888888888888777654
No 293
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.01 E-value=0.048 Score=52.31 Aligned_cols=51 Identities=12% Similarity=0.013 Sum_probs=40.2
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHH
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQ 245 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 245 (358)
.+-+++|+.|| ||| ||.+ |-++.. ....+.||..++++++.+.-+.+|+..
T Consensus 63 ~aGrgiLi~Gp--pgTGKTAl---A~gIa~-------------eLG~dvPF~~isgsEiYS~E~kKTE~L 114 (450)
T COG1224 63 MAGRGILIVGP--PGTGKTAL---AMGIAR-------------ELGEDVPFVAISGSEIYSLEVKKTEAL 114 (450)
T ss_pred ccccEEEEECC--CCCcHHHH---HHHHHH-------------HhCCCCCceeeccceeeeecccHHHHH
Confidence 45678999999 999 9999 888822 223458899999999977777888764
No 294
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.92 E-value=0.11 Score=46.14 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=68.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
.-++|.|| +|+ ||.. +..+...+ ... +...-.+. .|.. -+|-.+..+.||+..++....
T Consensus 2 ~vi~lvGp--tGvGKTTt---~aKLAa~~-----------~~~-~~~v~lis-~D~~--R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGP--TGVGKTTT---IAKLAARL-----------KLK-GKKVALIS-ADTY--RIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp EEEEEEES--TTSSHHHH---HHHHHHHH-----------HHT-T--EEEEE-ESTS--STHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEEECC--CCCchHhH---HHHHHHHH-----------hhc-cccceeec-CCCC--CccHHHHHHHHHHHhccccch
Confidence 44789999 999 9876 33332111 111 22222222 2221 368888889999998877533
Q ss_pred ccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.... .++-....+..+.++...-.+||||=. .|+ ......+..|-..++-.....-.+|+.+|-
T Consensus 62 ~~~~-----~~~~~~~~~~l~~~~~~~~D~vlIDT~-----Gr~------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 62 ARTE-----SDPAEIAREALEKFRKKGYDLVLIDTA-----GRS------PRDEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp SSTT-----SCHHHHHHHHHHHHHHTTSSEEEEEE------SSS------STHHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred hhcc-----hhhHHHHHHHHHHHhhcCCCEEEEecC-----Ccc------hhhHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 2211 123334444556555555578998821 111 122233333322222223334578888888
Q ss_pred Cccccchh
Q psy3629 339 RRDMIDEA 346 (358)
Q Consensus 339 ~~~~iD~a 346 (358)
..+.++.+
T Consensus 126 ~~~~~~~~ 133 (196)
T PF00448_consen 126 GQEDLEQA 133 (196)
T ss_dssp GGHHHHHH
T ss_pred ChHHHHHH
Confidence 88777743
No 295
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.84 E-value=0.15 Score=46.44 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=62.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
|...+||+|. -|| |+++ .+++-..+ ...+..++.|...++. .
T Consensus 84 pANnVLLwGa--RGtGKSSL---VKA~~~e~------------~~~glrLVEV~k~dl~---------~----------- 126 (287)
T COG2607 84 PANNVLLWGA--RGTGKSSL---VKALLNEY------------ADEGLRLVEVDKEDLA---------T----------- 126 (287)
T ss_pred cccceEEecC--CCCChHHH---HHHHHHHH------------HhcCCeEEEEcHHHHh---------h-----------
Confidence 4567999999 999 9999 88883221 1122224444433331 1
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-CCCC-CCEEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-VERL-NNILV 333 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-~~~~-~~v~v 333 (358)
+..+ ++..|. ...-|||+|++-= ..+ +.-...|=..||| +++. .||+|
T Consensus 127 --Lp~l---------------~~~Lr~~~~kFIlFcDDLSF-------e~g-----d~~yK~LKs~LeG~ve~rP~NVl~ 177 (287)
T COG2607 127 --LPDL---------------VELLRARPEKFILFCDDLSF-------EEG-----DDAYKALKSALEGGVEGRPANVLF 177 (287)
T ss_pred --HHHH---------------HHHHhcCCceEEEEecCCCC-------CCC-----chHHHHHHHHhcCCcccCCCeEEE
Confidence 3334 444443 3447999997631 111 1123345566776 4443 58999
Q ss_pred EEecCCccccchhcC
Q psy3629 334 IGMTNRRDMIDEALL 348 (358)
Q Consensus 334 i~aTn~~~~iD~a~l 348 (358)
-+|+||.+.|..-..
T Consensus 178 YATSNRRHLl~e~~~ 192 (287)
T COG2607 178 YATSNRRHLLPEDMK 192 (287)
T ss_pred EEecCCcccccHhhh
Confidence 999999999875543
No 296
>KOG2383|consensus
Probab=92.83 E-value=0.32 Score=47.46 Aligned_cols=19 Identities=11% Similarity=-0.132 Sum_probs=17.0
Q ss_pred cccceeeeeeccCCCCc-hhhh
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l 196 (358)
..+++|++|||. .|| ||+|
T Consensus 111 ~~~PkGlYlYG~--VGcGKTmL 130 (467)
T KOG2383|consen 111 PGPPKGLYLYGS--VGCGKTML 130 (467)
T ss_pred CCCCceEEEecc--cCcchhHH
Confidence 345899999999 999 9999
No 297
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.83 E-value=0.42 Score=51.49 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=68.1
Q ss_pred CCCeEEEEecCC---CCCcchhhcCCCCCce-EEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHH
Q psy3629 7 LNNILVIGMTNR---RDMIDEALLRPGRLEL-QMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGA 82 (358)
Q Consensus 7 ~~~V~vI~aTN~---p~~LD~Al~R~GRfd~-~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sga 82 (358)
..+++|||+||. |..|+|.+.. ||.. .|.|++++.++..+||+..+.... ...++..++.+|+.... ..+
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~---gVLdDdAIELIArkVAq-~SG 973 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCK---EIIDHTAIQLCARKVAN-VSG 973 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCC---CCCCHHHHHHHHHhhhh-cCC
Confidence 456999999996 6678888887 7754 488899999999999998887531 34456667777775553 346
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 83 ELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 83 di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
|++.++. .+..|... . +...|+.+|+.+|+..
T Consensus 974 DARKALD-ILRrAgEi----k----------egskVT~eHVrkAlee 1005 (1164)
T PTZ00112 974 DIRKALQ-ICRKAFEN----K----------RGQKIVPRDITEATNQ 1005 (1164)
T ss_pred HHHHHHH-HHHHHHhh----c----------CCCccCHHHHHHHHHH
Confidence 7666654 22333321 1 1124677777777755
No 298
>PRK05642 DNA replication initiation factor; Validated
Probab=92.73 E-value=0.5 Score=43.13 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=57.5
Q ss_pred CCCCeEEEEecCCCCCc---chhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 6 RLNNILVIGMTNRRDMI---DEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~L---D~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
.+++.++|+++..|..+ .|.+.. ||. ..+.+..|+.++|..+++....... ...++.-++.|++..++ +
T Consensus 128 ~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~---~~l~~ev~~~L~~~~~~-d 201 (234)
T PRK05642 128 DSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG---LHLTDEVGHFILTRGTR-S 201 (234)
T ss_pred hcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-C
Confidence 34567888887777544 678888 885 7778899999999999996554431 23456777888888874 6
Q ss_pred HHHHHHHHHHH
Q psy3629 81 GAELEGLVRAA 91 (358)
Q Consensus 81 gadi~~l~~~A 91 (358)
.+.+..++..-
T Consensus 202 ~r~l~~~l~~l 212 (234)
T PRK05642 202 MSALFDLLERL 212 (234)
T ss_pred HHHHHHHHHHH
Confidence 77777666643
No 299
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.65 E-value=0.013 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=18.6
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
..+++++|| ||+ ||.+ |.++...+
T Consensus 47 ~~~l~l~G~--~G~GKThL---a~ai~~~~ 71 (178)
T PF01695_consen 47 GENLILYGP--PGTGKTHL---AVAIANEA 71 (178)
T ss_dssp --EEEEEES--TTSSHHHH---HHHHHHHH
T ss_pred CeEEEEEhh--HhHHHHHH---HHHHHHHh
Confidence 467999999 999 9999 88885443
No 300
>COG1485 Predicted ATPase [General function prediction only]
Probab=92.49 E-value=0.12 Score=49.49 Aligned_cols=48 Identities=17% Similarity=0.362 Sum_probs=29.7
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCC-ccccchhcC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNR-RDMIDEALL 348 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-~~~iD~a~l 348 (358)
-||.|||+..= .- ...-+++.|+.+|= .++|++++|+|. |+.|=+--|
T Consensus 132 ~vLCfDEF~Vt-----DI-----~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGl 180 (367)
T COG1485 132 RVLCFDEFEVT-----DI-----ADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGL 180 (367)
T ss_pred CEEEeeeeeec-----Ch-----HHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccch
Confidence 49999998651 10 22356777777664 236899999986 444443333
No 301
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.47 E-value=1.2 Score=46.54 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=67.7
Q ss_pred CeEEEEe-cCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 9 NILVIGM-TNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 9 ~V~vI~a-TN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
++++|++ |+.++.+++++++ ||. .++++..+.++...|++..+.... ...++.-++.|+..+. .+...-+.
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~---v~ls~eal~~L~~ys~--~gRraln~ 394 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKIN---VHLAAGVEELIARYTI--EGRKAVNI 394 (615)
T ss_pred eEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHCCC--cHHHHHHH
Confidence 3566665 5568899999988 995 678888899999999999887642 1234445566666543 45555555
Q ss_pred HHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 88 VRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 88 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+..+...++.+...... ......++.+|+.+++..
T Consensus 395 L~~~~~~~~~~~~~~~~-------~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 395 LADVYGYALYRAAEAGK-------ENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHHHHHHHHhcc-------CCCCeeECHHHHHHHhCC
Confidence 55554443333210000 002346899999999976
No 302
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.41 E-value=0.24 Score=51.71 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=64.8
Q ss_pred CeEEEEecCCC--CCcchhhcCCCCCc---eEEEec--CCC-HHHHHHHHHHHHhccccc--cccCchhhHHHHHHhc--
Q psy3629 9 NILVIGMTNRR--DMIDEALLRPGRLE---LQMEIS--LPN-EDGRVQILQIHTAKMRSY--KKLADDVNLKELAALT-- 76 (358)
Q Consensus 9 ~V~vI~aTN~p--~~LD~Al~R~GRfd---~~I~v~--~P~-~~~R~~il~~~l~~~~~~--~~~~~~~~l~~la~~t-- 76 (358)
++.||+++|.. ..+||.++. ||+ .+++|+ +|+ .+.|..+.+.+.+....+ ....++.-++.+.+..
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999974 579999999 999 666663 354 566666656544433221 1122333344443211
Q ss_pred -C------CCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 77 -K------NFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 77 -~------g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
. ..+.++|.++++.|...|..+ +...++.+|+.+|++.
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~---------------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS---------------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc---------------CCceecHHHHHHHHHH
Confidence 1 145789999999985433222 2346899999998875
No 303
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=92.41 E-value=0.31 Score=49.96 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=27.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..+|++|+ +|| |+.+ |+++-.. ......+|+.+++...
T Consensus 228 ~pvlI~GE--~GtGK~~l---A~aiH~~------------s~r~~~pfv~inca~~ 266 (520)
T PRK10820 228 APLLITGD--TGTGKDLL---AYACHLR------------SPRGKKPFLALNCASI 266 (520)
T ss_pred CCEEEECC--CCccHHHH---HHHHHHh------------CCCCCCCeEEeccccC
Confidence 34899999 999 9999 8887211 3334567888887665
No 304
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=0.65 Score=46.87 Aligned_cols=78 Identities=15% Similarity=0.008 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|++|+.++.|.++++. |. .++.|..++.++-.+.++..+...+ ...++..+..||+.++| +.++.-+
T Consensus 149 p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Eg---i~~e~eAL~~Ia~~S~G-d~RdAL~ 221 (484)
T PRK14956 149 PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIEN---VQYDQEGLFWIAKKGDG-SVRDMLS 221 (484)
T ss_pred CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-hHHHHHH
Confidence 3579999999999999999998 87 5788888888888888888776542 23366778889988887 4556555
Q ss_pred HHHHH
Q psy3629 87 LVRAA 91 (358)
Q Consensus 87 l~~~A 91 (358)
++..+
T Consensus 222 lLeq~ 226 (484)
T PRK14956 222 FMEQA 226 (484)
T ss_pred HHHHH
Confidence 55544
No 305
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.00 E-value=0.71 Score=46.89 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=58.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.++.+.+++.+ |. ..+.|+.|+.++...+++..++..+ ...++..+..+++.+.| +.+++.+.
T Consensus 148 ~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~eg---i~id~~al~~La~~s~G-~lr~al~~ 220 (486)
T PRK14953 148 PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEK---IEYEEKALDLLAQASEG-GMRDAASL 220 (486)
T ss_pred CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 457777778888999999988 77 4799999999999999998887653 22345667788887775 55666666
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++.+.
T Consensus 221 Ldkl~ 225 (486)
T PRK14953 221 LDQAS 225 (486)
T ss_pred HHHHH
Confidence 66554
No 306
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.80 E-value=0.12 Score=46.29 Aligned_cols=69 Identities=19% Similarity=0.307 Sum_probs=47.4
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.++.+..+.+.-|...-.||+||=++.++-. .+..-+.+|++.+..+...++|+++ |=+|+.+|++++=
T Consensus 108 ~~~~L~~l~~~~k~~~~dViIIDSls~~~~~---------~~~~~vl~fm~~~r~l~d~gKvIil--Tvhp~~l~e~~~~ 176 (235)
T COG2874 108 ARKLLDLLLEFIKRWEKDVIIIDSLSAFATY---------DSEDAVLNFMTFLRKLSDLGKVIIL--TVHPSALDEDVLT 176 (235)
T ss_pred HHHHHHHHHhhHHhhcCCEEEEecccHHhhc---------ccHHHHHHHHHHHHHHHhCCCEEEE--EeChhhcCHHHHH
Confidence 3445666777777777789999999998765 1223355777777777654555443 4589999988764
No 307
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=91.79 E-value=0.17 Score=50.83 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=27.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+++.|. +|| |+.+ |+++-.. ....+.+|+.+++...
T Consensus 157 ~~~vli~Ge--~GtGK~~~---A~~ih~~------------~~~~~~~~~~~~c~~~ 196 (463)
T TIGR01818 157 DITVLINGE--SGTGKELV---ARALHRH------------SPRANGPFIALNMAAI 196 (463)
T ss_pred CCeEEEECC--CCCCHHHH---HHHHHHh------------CCCCCCCeEEEeCCCC
Confidence 345899999 999 9998 8777221 3335667888876665
No 308
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=91.70 E-value=0.15 Score=45.82 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 282 PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 282 ~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
....+.+|+||-|..++..-.......+...+.+.+++..|..+-...++.||.++.
T Consensus 111 ~~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 111 SSGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred hcCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 356889999999999875421111111123456777777777765445666766653
No 309
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.69 E-value=0.53 Score=43.37 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=16.5
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-++++|| +|+ ||.+ ++.+.
T Consensus 44 ~~~~l~G~--~G~GKTtl---~~~l~ 64 (269)
T TIGR03015 44 GFILITGE--VGAGKTTL---IRNLL 64 (269)
T ss_pred CEEEEEcC--CCCCHHHH---HHHHH
Confidence 34789999 999 9999 77773
No 310
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=91.64 E-value=0.3 Score=48.73 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=27.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+++.|+ +|+ |+.+ |+.+... ......+|+.+.+...
T Consensus 162 ~~~vli~Ge--~GtGK~~l---A~~ih~~------------s~~~~~~~v~v~c~~~ 201 (445)
T TIGR02915 162 DITVLLLGE--SGTGKEVL---ARALHQL------------SDRKDKRFVAINCAAI 201 (445)
T ss_pred CCCEEEECC--CCcCHHHH---HHHHHHh------------CCcCCCCeEEEECCCC
Confidence 355899999 999 9999 8887321 2334556777776655
No 311
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.64 E-value=1.4 Score=45.74 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=55.5
Q ss_pred CeEEEEecCC-CC---CcchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHH
Q psy3629 9 NILVIGMTNR-RD---MIDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGA 82 (358)
Q Consensus 9 ~V~vI~aTN~-p~---~LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sga 82 (358)
+-+|| ++|+ |. .+++.|.. ||. ..+++..||.+.|..||+....... ...++.-++.|+++..+ +..
T Consensus 411 k~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~---l~l~~eVi~yLa~r~~r-nvR 483 (617)
T PRK14086 411 KQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQ---LNAPPEVLEFIASRISR-NIR 483 (617)
T ss_pred CCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhccC-CHH
Confidence 33444 6665 43 57888988 985 6668899999999999999887652 23456677888888774 677
Q ss_pred HHHHHHHHHH
Q psy3629 83 ELEGLVRAAQ 92 (358)
Q Consensus 83 di~~l~~~A~ 92 (358)
+|+.++..-.
T Consensus 484 ~LegaL~rL~ 493 (617)
T PRK14086 484 ELEGALIRVT 493 (617)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 312
>KOG0991|consensus
Probab=91.63 E-value=0.1 Score=47.36 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=16.6
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+..+++.|| ||+ ||.. +.++.
T Consensus 48 mP~liisGp--PG~GKTTs---i~~LA 69 (333)
T KOG0991|consen 48 MPNLIISGP--PGTGKTTS---ILCLA 69 (333)
T ss_pred CCceEeeCC--CCCchhhH---HHHHH
Confidence 567899999 999 9876 55553
No 313
>PRK15115 response regulator GlrR; Provisional
Probab=91.57 E-value=0.19 Score=50.08 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=27.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..++++|+ +|+ |+.+ |+.+-.. ....+.+|+.+.+...
T Consensus 158 ~~vli~Ge--~GtGk~~l---A~~ih~~------------s~r~~~~f~~i~c~~~ 196 (444)
T PRK15115 158 VSVLINGQ--SGTGKEIL---AQAIHNA------------SPRASKPFIAINCGAL 196 (444)
T ss_pred CeEEEEcC--CcchHHHH---HHHHHHh------------cCCCCCCeEEEeCCCC
Confidence 45899999 999 9999 8877321 3345567888877665
No 314
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=1.1 Score=47.73 Aligned_cols=79 Identities=20% Similarity=0.112 Sum_probs=61.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|.+||.++.|.+.++. |. .++.|..++.++-.+.|+..++... ...++..++.|++.+.| +..+.-+
T Consensus 147 P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg---I~id~eAL~lIA~~A~G-smRdALs 219 (830)
T PRK07003 147 PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEER---IAFEPQALRLLARAAQG-SMRDALS 219 (830)
T ss_pred CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3578999999999999999988 87 7889999999999988888876532 23366778889999987 4566666
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
++.++.
T Consensus 220 LLdQAi 225 (830)
T PRK07003 220 LTDQAI 225 (830)
T ss_pred HHHHHH
Confidence 665554
No 315
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.25 Score=47.29 Aligned_cols=82 Identities=29% Similarity=0.470 Sum_probs=50.1
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhh-HHHHHHHHccCCCC--------CCCCEEEEEec---
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHD-TVVNQLLSKMDGVE--------RLNNILVIGMT--- 337 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~-~~~~~lL~~ld~~~--------~~~~v~vi~aT--- 337 (358)
.|...++-...|.++. ||||||||.++.+ ++.++. ++++ -|-..||--+.|-. .-+.+++||+-
T Consensus 237 ~e~i~~eAi~~aE~~G--IvFIDEIDKIa~~-~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh 312 (444)
T COG1220 237 QEEIKQEAIDAAEQNG--IVFIDEIDKIAKR-GGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH 312 (444)
T ss_pred HHHHHHHHHHHHHhcC--eEEEehhhHHHhc-CCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCcee
Confidence 3444444566666666 9999999999987 333322 3443 35556888888742 11347777764
Q ss_pred -CCccccchhcCCCCCCcccc
Q psy3629 338 -NRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 338 -n~~~~iD~a~lr~GRfd~~~ 357 (358)
..|..|=|.| .|||=+.|
T Consensus 313 ~sKPSDLiPEL--QGRfPIRV 331 (444)
T COG1220 313 VAKPSDLIPEL--QGRFPIRV 331 (444)
T ss_pred cCChhhcChhh--cCCCceEE
Confidence 4555555554 46875543
No 316
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.35 E-value=0.12 Score=49.69 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=18.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
.+++|+|| ||+ ||.| +.++...
T Consensus 184 ~~Lll~G~--~GtGKThL---a~aIa~~ 206 (329)
T PRK06835 184 ENLLFYGN--TGTGKTFL---SNCIAKE 206 (329)
T ss_pred CcEEEECC--CCCcHHHH---HHHHHHH
Confidence 77999999 999 9999 8888443
No 317
>PRK09087 hypothetical protein; Validated
Probab=91.25 E-value=0.14 Score=46.60 Aligned_cols=18 Identities=22% Similarity=0.088 Sum_probs=16.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-++++|| +|+ ||.| ++++
T Consensus 46 ~l~l~G~--~GsGKThL---l~~~ 64 (226)
T PRK09087 46 VVVLAGP--VGSGKTHL---ASIW 64 (226)
T ss_pred eEEEECC--CCCCHHHH---HHHH
Confidence 3799999 999 9999 8777
No 318
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=91.23 E-value=0.16 Score=49.95 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=29.8
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCC-CccccccccCcccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPG-RHYIFTLAYSPDVK 235 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 235 (358)
..+|+.|+ +|| |+.+ |+.+- .. +.. ...||+.+++....
T Consensus 102 ~~vLi~Ge--tGtGKel~---A~~iH--~~----------s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 102 LPVLIIGE--TGTGKELF---ARLIH--AL----------SARRAEAPFIAFNCAAYS 142 (403)
T ss_pred CcEEEecC--CCccHHHH---HHHHH--Hh----------hhcccCCCEEEEEHHHhC
Confidence 45999999 999 9998 88882 11 333 57889999888774
No 319
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=91.20 E-value=0.4 Score=48.06 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=31.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...||++|+ .|| |..+ |+++-.. ++..+-||+.+++..+
T Consensus 164 ~a~VLI~GE--SGtGKElv---Ar~IH~~------------S~R~~~PFVavNcaAi 203 (464)
T COG2204 164 DASVLITGE--SGTGKELV---ARAIHQA------------SPRAKGPFIAVNCAAI 203 (464)
T ss_pred CCCEEEECC--CCCcHHHH---HHHHHhh------------CcccCCCceeeecccC
Confidence 456999999 999 9999 8888321 5667789999988776
No 320
>KOG2227|consensus
Probab=91.05 E-value=0.26 Score=49.04 Aligned_cols=53 Identities=26% Similarity=0.441 Sum_probs=37.9
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
.|-++++||+|.++.++ ++++ .-|-+++.+.. .++++||.+|..|+=|..|.|
T Consensus 256 ~~~llVlDEmD~L~tr~----------~~vL-y~lFewp~lp~-sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRS----------QTVL-YTLFEWPKLPN-SRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred ceEEEEechhhHHhhcc----------ccee-eeehhcccCCc-ceeeeeeehhhhhHHHHHhhh
Confidence 57899999999998442 1223 22344555543 478999999999999987765
No 321
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.02 E-value=0.24 Score=44.67 Aligned_cols=64 Identities=8% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
++.+....+ ..+.+|+||-+.+++..--..........+.+.++++.|-.+-...++.||.|..
T Consensus 97 i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 97 IRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 344433333 6789999999999975421111111122345566555554443334566666543
No 322
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.98 E-value=2.5 Score=40.26 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=50.9
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
...+|.+|+.+..+.+.+.. |. ..++++.|+.++...+++..+...+ ...++..++.|++.+. ++++.++
T Consensus 155 ~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~---~~~~~~al~~l~~~~~----gdlr~l~ 224 (337)
T PRK12402 155 TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEG---VDYDDDGLELIAYYAG----GDLRKAI 224 (337)
T ss_pred CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcC----CCHHHHH
Confidence 35566677777788888877 76 6789999999999999998877643 2245667788888774 3454444
Q ss_pred H
Q psy3629 89 R 89 (358)
Q Consensus 89 ~ 89 (358)
.
T Consensus 225 ~ 225 (337)
T PRK12402 225 L 225 (337)
T ss_pred H
Confidence 4
No 323
>KOG1051|consensus
Probab=90.96 E-value=0.22 Score=53.52 Aligned_cols=82 Identities=20% Similarity=0.202 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc---
Q psy3629 266 PKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--- 341 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--- 341 (358)
+.|+-|..+..+-+.+.. ....|||+||+.-+.+.....+ ..-...+|..+=+ ++++.+||||..-.
T Consensus 260 ~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~------~~d~~nlLkp~L~---rg~l~~IGatT~e~Y~k 330 (898)
T KOG1051|consen 260 RRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG------AIDAANLLKPLLA---RGGLWCIGATTLETYRK 330 (898)
T ss_pred cchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch------HHHHHHhhHHHHh---cCCeEEEecccHHHHHH
Confidence 345566666666888774 4567999999999988743211 1111223333322 23489999986322
Q ss_pred --ccchhcCCCCCCccccC
Q psy3629 342 --MIDEALLRPGRLEVSEI 358 (358)
Q Consensus 342 --~iD~a~lr~GRfd~~~~ 358 (358)
.=|||+=| ||+.+.|
T Consensus 331 ~iekdPalEr--rw~l~~v 347 (898)
T KOG1051|consen 331 CIEKDPALER--RWQLVLV 347 (898)
T ss_pred HHhhCcchhh--CcceeEe
Confidence 24999999 9997654
No 324
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=90.91 E-value=0.4 Score=49.75 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=37.8
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC---------C--CCCCEEEEEecCCc---cccchhcCCCCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV---------E--RLNNILVIGMTNRR---DMIDEALLRPGR 352 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~---------~--~~~~v~vi~aTn~~---~~iD~a~lr~GR 352 (358)
-|||+||+..+ ...+++.|+.-|+.= . --.+.++|+|-|.. ..|-+++|- |
T Consensus 95 GvL~lDe~n~~-------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--R 159 (584)
T PRK13406 95 GVLVLAMAERL-------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--R 159 (584)
T ss_pred CEEEecCcccC-------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--h
Confidence 59999999775 245788888888731 0 11246677753322 347888888 9
Q ss_pred Ccccc
Q psy3629 353 LEVSE 357 (358)
Q Consensus 353 fd~~~ 357 (358)
||+++
T Consensus 160 f~l~v 164 (584)
T PRK13406 160 LAFHL 164 (584)
T ss_pred eEEEE
Confidence 99875
No 325
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.89 E-value=0.62 Score=43.13 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=39.0
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCE--EEEEecCCc
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNI--LVIGMTNRR 340 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v--~vi~aTn~~ 340 (358)
+.+..+..+-..++...|.+||||.+..+........ .....+.+++..|..+-...++ +++.-+|+.
T Consensus 124 ~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~----~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~ 193 (271)
T cd01122 124 SMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASG----DERKALDEIMTKLRGFATEHGIHITLVSHLRRP 193 (271)
T ss_pred CHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCch----hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCc
Confidence 5566777777667777899999999999965431111 1223344555555444333333 344333543
No 326
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.85 E-value=0.12 Score=46.54 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=39.1
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.+.+..+..+-+..+...|.+++||-+..+... . ......+.+..|...+. ..++.+|.|..
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~-~----~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLY-D----DPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS-S----SGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc-C----CHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 466777777777777788899999999999222 1 11133455666666663 22345555554
No 327
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.80 E-value=1 Score=45.72 Aligned_cols=80 Identities=19% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
...+.+|.+|+.++.|.+.++. |. ..++|..++.++....++..++..+ ...++..++.+++.+.| +..++.+
T Consensus 144 p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Eg---i~i~~eAL~lIa~~s~G-slR~als 216 (491)
T PRK14964 144 APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKEN---IEHDEESLKLIAENSSG-SMRNALF 216 (491)
T ss_pred CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3468888888899999999988 77 7789999999999999888877642 23466778889999976 8888888
Q ss_pred HHHHHHH
Q psy3629 87 LVRAAQS 93 (358)
Q Consensus 87 l~~~A~~ 93 (358)
.+..+..
T Consensus 217 lLdqli~ 223 (491)
T PRK14964 217 LLEQAAI 223 (491)
T ss_pred HHHHHHH
Confidence 8877654
No 328
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.76 E-value=1.3 Score=47.04 Aligned_cols=78 Identities=19% Similarity=0.167 Sum_probs=58.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
...+++|.+|+.++.|.+.+++ |. ..++|..|+.++....++..+...+ ...++..+..+|..+.| +.+++.+
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~keg---I~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKEN---ISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568888899999999999988 88 5899999999999988887776542 12244557788888775 5566666
Q ss_pred HHHHH
Q psy3629 87 LVRAA 91 (358)
Q Consensus 87 l~~~A 91 (358)
++..+
T Consensus 219 lLekl 223 (725)
T PRK07133 219 IAEQV 223 (725)
T ss_pred HHHHH
Confidence 65554
No 329
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=90.46 E-value=1.9 Score=39.69 Aligned_cols=50 Identities=22% Similarity=0.473 Sum_probs=42.6
Q ss_pred CCeEEEEecCCCCCcchhhc-CC--------------------CCCceEEEecCCCHHHHHHHHHHHHhcc
Q psy3629 8 NNILVIGMTNRRDMIDEALL-RP--------------------GRLELQMEISLPNEDGRVQILQIHTAKM 57 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~-R~--------------------GRfd~~I~v~~P~~~~R~~il~~~l~~~ 57 (358)
.||++.+|+||...+.+.+. |. .||...|.|..|+.++=.+|.+.+++.+
T Consensus 140 ~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~ 210 (249)
T PF05673_consen 140 DNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY 210 (249)
T ss_pred CcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc
Confidence 48999999999887766544 22 3999999999999999999999999876
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.44 E-value=2 Score=42.68 Aligned_cols=80 Identities=25% Similarity=0.229 Sum_probs=55.1
Q ss_pred CCeEEEEecC--CCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 8 NNILVIGMTN--RRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 8 ~~V~vI~aTN--~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
+.+++|++|+ ....+++++++ |+ ..+.++.|+.++...+++..+..........++..++.+++.+.| ....+.
T Consensus 119 ~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~al 194 (413)
T PRK13342 119 GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRAL 194 (413)
T ss_pred CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHH
Confidence 5677777764 34589999999 98 789999999999999999887653211002345557778887754 455555
Q ss_pred HHHHHH
Q psy3629 86 GLVRAA 91 (358)
Q Consensus 86 ~l~~~A 91 (358)
++++.+
T Consensus 195 n~Le~~ 200 (413)
T PRK13342 195 NLLELA 200 (413)
T ss_pred HHHHHH
Confidence 555554
No 331
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.37 E-value=0.73 Score=48.17 Aligned_cols=79 Identities=19% Similarity=0.093 Sum_probs=60.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|.+||.++.|.+.++. |. ..+.|..++.++..+.++..+.... ...++..++.|++.++| +..+..+
T Consensus 152 P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg---i~~d~eAL~~IA~~A~G-s~RdALs 224 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG---IAHEVNALRLLAQAAQG-SMRDALS 224 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 4578999999999999999998 77 7889999999998888887776532 12344557788888887 6666666
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
++.++.
T Consensus 225 LLdQai 230 (700)
T PRK12323 225 LTDQAI 230 (700)
T ss_pred HHHHHH
Confidence 666554
No 332
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.32 E-value=0.18 Score=49.46 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
.+.++++..+...|.+|+||+|..+...
T Consensus 146 ~le~I~~~i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 146 NLEDILASIEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred cHHHHHHHHHhcCCcEEEEcchHHhhcc
Confidence 3455566667789999999999999754
No 333
>KOG0482|consensus
Probab=90.25 E-value=0.11 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=20.7
Q ss_pred ccccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 175 ESSGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 175 ~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++|-..++|.|. ||. |++|......+
T Consensus 371 KIRGdINicLmGD--PGVAKSQLLkyi~rl 398 (721)
T KOG0482|consen 371 KIRGDINICLMGD--PGVAKSQLLKYISRL 398 (721)
T ss_pred eeecceeEEecCC--CchhHHHHHHHHHhc
Confidence 3566788999999 999 99994444444
No 334
>smart00350 MCM minichromosome maintenance proteins.
Probab=90.11 E-value=3.2 Score=42.50 Aligned_cols=47 Identities=13% Similarity=0.172 Sum_probs=38.7
Q ss_pred CCeEEEEecCCCC-------------CcchhhcCCCCCceEEEe-cCCCHHHHHHHHHHHHhc
Q psy3629 8 NNILVIGMTNRRD-------------MIDEALLRPGRLELQMEI-SLPNEDGRVQILQIHTAK 56 (358)
Q Consensus 8 ~~V~vI~aTN~p~-------------~LD~Al~R~GRfd~~I~v-~~P~~~~R~~il~~~l~~ 56 (358)
.+..||||+|..+ .|+++++. |||..+.+ ..|+.+...+|.++.+..
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 4688999999753 69999999 99986555 789999999999987643
No 335
>PRK11823 DNA repair protein RadA; Provisional
Probab=90.06 E-value=0.19 Score=50.55 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
.+.++++..++..|.+|+||+|..+...
T Consensus 144 ~l~~i~~~i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 144 NLEAILATIEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred CHHHHHHHHHhhCCCEEEEechhhhccc
Confidence 3455677777788999999999998754
No 336
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.97 E-value=2.6 Score=39.70 Aligned_cols=74 Identities=12% Similarity=0.049 Sum_probs=53.4
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
++.+|.++|.+..+.+++.+ |+. .++|+.|+.++...+++.+++..+ ...++..++.+++.+.| +.+.+.+.+
T Consensus 132 ~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~---~~i~~~al~~l~~~~~g-d~r~~~~~l 204 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEG---IEITDDALEAIYYVSEG-DMRKAINAL 204 (319)
T ss_pred CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 45666778888888888887 774 689999999999999998887652 22356678888887765 444444444
Q ss_pred H
Q psy3629 89 R 89 (358)
Q Consensus 89 ~ 89 (358)
+
T Consensus 205 ~ 205 (319)
T PRK00440 205 Q 205 (319)
T ss_pred H
Confidence 4
No 337
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.75 E-value=2.1 Score=41.58 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=56.5
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
...++|.+|+.+..+.+++.+ |+ ..++++.|+.++...++...+.+.+ ...++..++.++..+.| +.+.+.+.
T Consensus 137 ~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g---~~i~~~al~~l~~~~~g-dlr~~~~~ 209 (367)
T PRK14970 137 AHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEG---IKFEDDALHIIAQKADG-ALRDALSI 209 (367)
T ss_pred CceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 356677778888999999987 76 4789999999999888888776642 22456778888887765 55555555
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++...
T Consensus 210 lekl~ 214 (367)
T PRK14970 210 FDRVV 214 (367)
T ss_pred HHHHH
Confidence 55443
No 338
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.71 E-value=1.8 Score=44.42 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=62.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+.+|.+|+.+..|.++++. |- .+++|..++.++-...++..+...+ ...++..+..++..+.| +.+++.++
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EG---i~i~~~Al~~Ia~~s~G-dlR~alnl 218 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEG---VSYEPEALEILARSGNG-SLRDTLTL 218 (535)
T ss_pred CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 457777888889999999988 85 6899999999888888887776542 23356678889988887 88888888
Q ss_pred HHHHHHH
Q psy3629 88 VRAAQSC 94 (358)
Q Consensus 88 ~~~A~~~ 94 (358)
+..+...
T Consensus 219 Ldqai~~ 225 (535)
T PRK08451 219 LDQAIIY 225 (535)
T ss_pred HHHHHHh
Confidence 8776643
No 339
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.65 E-value=1.7 Score=45.09 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=61.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
...+++|.+|+.++.|.++++. |. ..++|..|+.++...+++..+.... ...++..+..|+..+.| +.+++.+
T Consensus 147 p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~eg---i~id~eAl~lLa~~s~G-dlR~als 219 (563)
T PRK06647 147 PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQ---IKYEDEALKWIAYKSTG-SVRDAYT 219 (563)
T ss_pred CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568888888889999999988 87 4789999999999988888776542 23356778889988887 7777777
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
.+..+.
T Consensus 220 lLdkli 225 (563)
T PRK06647 220 LFDQVV 225 (563)
T ss_pred HHHHHH
Confidence 776654
No 340
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.64 E-value=0.11 Score=51.25 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=17.8
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
-+++||| .|. ||.| ..+++...
T Consensus 115 plfi~G~--~GlGKTHL---l~Aign~~ 137 (408)
T COG0593 115 PLFIYGG--VGLGKTHL---LQAIGNEA 137 (408)
T ss_pred cEEEECC--CCCCHHHH---HHHHHHHH
Confidence 3899999 999 9999 77775443
No 341
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.61 E-value=0.87 Score=43.17 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=39.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhc
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAK 56 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~ 56 (358)
.++.+|.+||.+..+++++++ || ..+.++.|+.+++..+++.++..
T Consensus 130 ~~~~~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~~ 175 (316)
T PHA02544 130 KNCSFIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIVR 175 (316)
T ss_pred CCceEEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 467888999999999999999 99 57899999999999888866544
No 342
>PF13173 AAA_14: AAA domain
Probab=89.42 E-value=0.2 Score=40.93 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.2
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-++++|| .|+ ||.+ ++.+
T Consensus 4 ~~~l~G~--R~vGKTtl---l~~~ 22 (128)
T PF13173_consen 4 IIILTGP--RGVGKTTL---LKQL 22 (128)
T ss_pred eEEEECC--CCCCHHHH---HHHH
Confidence 3789999 999 9998 6666
No 343
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.36 E-value=0.94 Score=45.56 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCeEEEEecCCCCC---cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHH
Q psy3629 8 NNILVIGMTNRRDM---IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGA 82 (358)
Q Consensus 8 ~~V~vI~aTN~p~~---LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sga 82 (358)
++.+||.+...|.. +++.+.. ||. ..+.+..|+.++|.++++..++..+. ....++..++.|+..+.| +.+
T Consensus 239 ~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l~~evl~~Ia~~~~g-d~R 314 (450)
T PRK14087 239 DKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-KQEVTEEAINFISNYYSD-DVR 314 (450)
T ss_pred CCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHccCC-CHH
Confidence 34444444444544 4778888 885 67788899999999999999876421 013456778889988886 788
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 83 ELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 83 di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.+..+|..+...+... . ....++.+.+.++++.
T Consensus 315 ~L~gaL~~l~~~a~~~---~-----------~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 315 KIKGSVSRLNFWSQQN---P-----------EEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHHHHHHhcc---c-----------CCCCCCHHHHHHHHhh
Confidence 8888887665433321 0 0135777777777765
No 344
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.33 E-value=0.74 Score=41.74 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhh
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~ 299 (358)
.+..+..+-+...+..|.+|+||++-.+..
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 355566666666667889999999998753
No 345
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.26 E-value=1.1 Score=41.51 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.7
Q ss_pred CCCceEEEEccchhhhhh
Q psy3629 283 NSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~ 300 (358)
.....+||+||+..++..
T Consensus 101 ~G~~vll~iDei~r~a~a 118 (249)
T cd01128 101 HGKDVVILLDSITRLARA 118 (249)
T ss_pred CCCCEEEEEECHHHhhhh
Confidence 356789999999998754
No 346
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=89.24 E-value=0.23 Score=50.99 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=34.1
Q ss_pred EEEEccchhhhhhcCCCCCCcchhhHHHHHHHHc-----cCCCCCCCCEEEEEecCCccccchhcCCCCCC
Q psy3629 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK-----MDGVERLNNILVIGMTNRRDMIDEALLRPGRL 353 (358)
Q Consensus 288 iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~-----ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRf 353 (358)
-+|+|||..+--. -+.|++ ..|.| ++|-...-+|=||+||+++=. ++.+-|||
T Consensus 410 tlFldeIgd~p~~---------~Qs~LL-rVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~f 467 (606)
T COG3284 410 TLFLDEIGDMPLA---------LQSRLL-RVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRF 467 (606)
T ss_pred ccHHHHhhhchHH---------HHHHHH-HHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCc
Confidence 6999999887433 233444 33333 444443346889999988633 77788888
No 347
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=89.23 E-value=2.4 Score=41.03 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCeEEEEecCCCC-CcchhhcCCCCCceEEEecCCCH-HHHHHHHHHHH
Q psy3629 8 NNILVIGMTNRRD-MIDEALLRPGRLELQMEISLPNE-DGRVQILQIHT 54 (358)
Q Consensus 8 ~~V~vI~aTN~p~-~LD~Al~R~GRfd~~I~v~~P~~-~~R~~il~~~l 54 (358)
.++++|+++|-.+ .+.++++. ||..++.++.|+. ++|.+|++...
T Consensus 173 ~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 3688889988655 69999999 9999999999975 88999998743
No 348
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=89.11 E-value=3.4 Score=39.89 Aligned_cols=45 Identities=22% Similarity=0.512 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCC-CcchhhcCCCCCceEEEecCCCH-HHHHHHHHHHH
Q psy3629 8 NNILVIGMTNRRD-MIDEALLRPGRLELQMEISLPNE-DGRVQILQIHT 54 (358)
Q Consensus 8 ~~V~vI~aTN~p~-~LD~Al~R~GRfd~~I~v~~P~~-~~R~~il~~~l 54 (358)
.++++|+++|-.+ .++++++. ||...+.++.|.. ++|.++++...
T Consensus 170 ~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 3689999988655 68999999 9999999998866 99999998754
No 349
>PRK04195 replication factor C large subunit; Provisional
Probab=88.82 E-value=1.8 Score=43.98 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.+..+|.+||.++.+++.-+| +.-..|+|+.|+..+...+++..+...+ ...++..++.|++.+.| |++.+
T Consensus 129 ~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~eg---i~i~~eaL~~Ia~~s~G----DlR~a 199 (482)
T PRK04195 129 AKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEG---IECDDEALKEIAERSGG----DLRSA 199 (482)
T ss_pred CCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC----CHHHH
Confidence 345677789999999884444 3447899999999999999998886643 23456678888887654 77766
Q ss_pred HHHH
Q psy3629 88 VRAA 91 (358)
Q Consensus 88 ~~~A 91 (358)
+...
T Consensus 200 in~L 203 (482)
T PRK04195 200 INDL 203 (482)
T ss_pred HHHH
Confidence 6544
No 350
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.62 E-value=1.1 Score=39.05 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
.++++|.+||.+..|.+++.+ |. ..++|+.|+.++..++++.. . . ++..++.++..+.|
T Consensus 125 ~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~--g------i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 125 PNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ--G------I-SEEAAELLLALAGG 183 (188)
T ss_pred CCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc--C------C-CHHHHHHHHHHcCC
Confidence 357777788888999999998 77 58999999999988888764 1 2 34556777777665
No 351
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=88.51 E-value=0.59 Score=42.55 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=22.2
Q ss_pred hHHHHHHhhcCCCCCceEEEEccchhhh
Q psy3629 271 EFLCTIILEAGPNSGLHIIIFDEIDAIC 298 (358)
Q Consensus 271 e~~~~~~f~~a~~~~p~iif~DeiD~~~ 298 (358)
+..+..+.+.+....|.++++||+-++.
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 5566667777767789999999999875
No 352
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.46 E-value=0.93 Score=42.42 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=34.0
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC--------CCCEEEEEecCCc---cccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER--------LNNILVIGMTNRR---DMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~--------~~~v~vi~aTn~~---~~iD~a~lr 349 (358)
....+|+|+|++.--.+..- +.+..-.++.|++..= |... -.++.++||.|.+ ..|.+-++|
T Consensus 98 ~~k~lv~fiDDlN~p~~d~y----gtq~~iElLRQ~i~~~-g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r 170 (272)
T PF12775_consen 98 GGKKLVLFIDDLNMPQPDKY----GTQPPIELLRQLIDYG-GFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR 170 (272)
T ss_dssp SSSEEEEEEETTT-S---TT----S--HHHHHHHHHHHCS-EEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT
T ss_pred CCcEEEEEecccCCCCCCCC----CCcCHHHHHHHHHHhc-CcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh
Confidence 45678999999987654421 1123345666666542 3321 2468889988742 236666666
No 353
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=88.35 E-value=3.1 Score=38.63 Aligned_cols=50 Identities=26% Similarity=0.293 Sum_probs=39.8
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
..-|++|+++|.+-.. .-|.||..++.... ++++|.+|++++.|-|-+..
T Consensus 88 ~~KV~II~~ae~m~~~-------------AaNaLLK~LEEPp~--~t~fiLit~~~~~lLpTI~S 137 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQ-------------SANSLLKLIEEPPK--NTYGIFTTRNENNILNTILS 137 (261)
T ss_pred CCEEEEeccHhhhCHH-------------HHHHHHHhhcCCCC--CeEEEEEECChHhCchHhhh
Confidence 3579999999998433 46899999996544 78888899999998888775
No 354
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=88.34 E-value=1.7 Score=45.17 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=57.6
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
...+++|.+|+.+..|.+.+++ |. ..++|+.|+.++....++..+...+ ...++..+..+++.+.| +.+++.+
T Consensus 147 p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~keg---i~Is~eal~~La~lS~G-dlR~Aln 219 (605)
T PRK05896 147 PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEK---IKIEDNAIDKIADLADG-SLRDGLS 219 (605)
T ss_pred CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-cHHHHHH
Confidence 3568888899999999999998 87 5899999999999888888776542 12345567788888876 5555555
Q ss_pred HHHH
Q psy3629 87 LVRA 90 (358)
Q Consensus 87 l~~~ 90 (358)
.+..
T Consensus 220 lLek 223 (605)
T PRK05896 220 ILDQ 223 (605)
T ss_pred HHHH
Confidence 5554
No 355
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.31 E-value=3.2 Score=42.43 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++++|.+||.+..+.+.+.+ |. ..++|..|+.++-...++..++..+ ...++..+..+++.+.| +.+++.+.
T Consensus 145 ~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~eg---i~i~~~Al~~ia~~s~G-dlR~aln~ 217 (504)
T PRK14963 145 EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEG---REAEPEALQLVARLADG-AMRDAESL 217 (504)
T ss_pred CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467888889999999999988 77 5899999999999999988886642 12355667788887775 44555555
Q ss_pred HHHH
Q psy3629 88 VRAA 91 (358)
Q Consensus 88 ~~~A 91 (358)
++.+
T Consensus 218 Lekl 221 (504)
T PRK14963 218 LERL 221 (504)
T ss_pred HHHH
Confidence 5543
No 356
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=88.30 E-value=0.28 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=19.5
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+|-..+|+.|. ||+ |+++..+...+
T Consensus 317 RGDInILLvGD--PgtaKSqlLk~v~~~ 342 (682)
T COG1241 317 RGDIHILLVGD--PGTAKSQLLKYVAKL 342 (682)
T ss_pred ccceeEEEcCC--CchhHHHHHHHHHhh
Confidence 45678999999 999 99995555444
No 357
>PHA00729 NTP-binding motif containing protein
Probab=88.25 E-value=0.51 Score=42.87 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=19.2
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
++..++++|+ ||+ ||.+ |.++..
T Consensus 16 ~f~nIlItG~--pGvGKT~L---A~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGK--QGSGKTTY---ALKVAR 39 (226)
T ss_pred CeEEEEEECC--CCCCHHHH---HHHHHH
Confidence 4567999999 999 9999 888843
No 358
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=87.98 E-value=2.8 Score=44.10 Aligned_cols=78 Identities=17% Similarity=0.091 Sum_probs=58.8
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
.+++.+|.+|+.+..|.+.++. |. ..+.|..++.++-...|+..+.... ...++..+..|+..+.| +.++.-+
T Consensus 147 p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~---i~~e~~aL~~Ia~~s~G-s~R~Al~ 219 (647)
T PRK07994 147 PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQ---IPFEPRALQLLARAADG-SMRDALS 219 (647)
T ss_pred CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568888889999999999887 75 8899999999999988888775532 23355667888888887 5555556
Q ss_pred HHHHH
Q psy3629 87 LVRAA 91 (358)
Q Consensus 87 l~~~A 91 (358)
++..|
T Consensus 220 lldqa 224 (647)
T PRK07994 220 LTDQA 224 (647)
T ss_pred HHHHH
Confidence 65544
No 359
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.85 E-value=2.2 Score=44.88 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=61.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+.+|.+|+.+..+.+.+++ |. .+++|..++.++-...++..+.... ...++..+..+++.+.| +.+++.++
T Consensus 147 ~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEg---I~id~eAL~~IA~~S~G-dLRdALnL 219 (702)
T PRK14960 147 EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQ---IAADQDAIWQIAESAQG-SLRDALSL 219 (702)
T ss_pred CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 567888888889999988887 77 7899999999999888888876642 23456778889988876 77777777
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 220 LDQaI 224 (702)
T PRK14960 220 TDQAI 224 (702)
T ss_pred HHHHH
Confidence 76654
No 360
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.48 E-value=3.2 Score=43.48 Aligned_cols=78 Identities=18% Similarity=0.121 Sum_probs=60.0
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+.+|.+|+.+..+.+.++. |. ..++|..++.++....++..+...+ ...++..+..|++.+.| +.+++.++
T Consensus 153 ~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~eg---i~ie~~AL~~La~~s~G-slR~al~l 225 (618)
T PRK14951 153 EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAEN---VPAEPQALRLLARAARG-SMRDALSL 225 (618)
T ss_pred CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467788888889999888887 76 8899999999998888888776542 23355668889998887 77777777
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 226 Ldq~i 230 (618)
T PRK14951 226 TDQAI 230 (618)
T ss_pred HHHHH
Confidence 76554
No 361
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=87.16 E-value=2 Score=43.12 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=28.6
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+++.|+ +|| |+.+ |+.+-.. ....+.+|+.+++...
T Consensus 161 ~~~vli~Ge--~GtGK~~l---A~~ih~~------------s~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 161 SISVLINGE--SGTGKELV---AHALHRH------------SPRAKAPFIALNMAAI 200 (469)
T ss_pred CCeEEEEeC--CCCcHHHH---HHHHHhc------------CCCCCCCeEeeeCCCC
Confidence 445899999 999 9999 8887221 3345677888887665
No 362
>KOG1968|consensus
Probab=87.10 E-value=0.28 Score=52.93 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=31.4
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGF 241 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 241 (358)
.++.|| ||. ||.. +... +...++..+..++.+..++....
T Consensus 360 ~l~~G~--pGigKT~~---~h~~---------------~k~~g~~v~E~Nas~~RSk~~l~ 400 (871)
T KOG1968|consen 360 LLLSGP--PGIGKTTA---AHKA---------------AKELGFKVVEKNASDVRSKKELL 400 (871)
T ss_pred HHhcCC--CCCCchhh---Hhhh---------------hhhcccceeecCccccccccHHH
Confidence 689999 999 9988 7777 77788888888888776555533
No 363
>PRK10536 hypothetical protein; Provisional
Probab=86.98 E-value=0.77 Score=42.56 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=34.8
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
|-+-|...-++|++||++.+-+ ..+..+|+.+. ...+++++|=.++.|.
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~-------------~~~k~~ltR~g---~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTA-------------AQMKMFLTRLG---ENVTVIVNGDITQCDL 217 (262)
T ss_pred HhcCCcccCCEEEEechhcCCH-------------HHHHHHHhhcC---CCCEEEEeCChhhccC
Confidence 6677777779999999987632 24556777775 3346888887777665
No 364
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.91 E-value=3.2 Score=41.75 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=56.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+++|.+||.++.|.++++. |. ..++|..|+.++-...++..++..+ ...++..++.|+..+.| +.+++.+.
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg---~~i~~~al~~L~~~s~g-dlr~a~~~ 222 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEG---IETSREALLPIARAAQG-SLRDAESL 222 (451)
T ss_pred CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467888888999999999998 87 5799999999998888887766532 12355667888888765 55555555
Q ss_pred HHH
Q psy3629 88 VRA 90 (358)
Q Consensus 88 ~~~ 90 (358)
++.
T Consensus 223 Lek 225 (451)
T PRK06305 223 YDY 225 (451)
T ss_pred HHH
Confidence 443
No 365
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.76 E-value=2.2 Score=44.39 Aligned_cols=79 Identities=13% Similarity=0.015 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|.+||.++.|.+.++. |. ..++|..++.++-...++..++..+ ...++..+..++..+.| +..++.+
T Consensus 147 p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~eg---i~i~~~al~~la~~a~G-~lr~al~ 219 (576)
T PRK14965 147 PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEG---ISISDAALALVARKGDG-SMRDSLS 219 (576)
T ss_pred CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3578888999999999999987 76 5888988888888888887776542 22356678888888886 6666666
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
.+..+.
T Consensus 220 ~Ldqli 225 (576)
T PRK14965 220 TLDQVL 225 (576)
T ss_pred HHHHHH
Confidence 665544
No 366
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=86.68 E-value=0.91 Score=32.44 Aligned_cols=37 Identities=32% Similarity=0.518 Sum_probs=25.7
Q ss_pred cChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhh
Q psy3629 108 VDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLS 147 (358)
Q Consensus 108 ~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~ 147 (358)
++.+.+..++|+.+||..|+++ ++|++ +..++.+|..
T Consensus 20 i~~~~l~~p~it~~DF~~Al~~-~kpSV--s~~dl~~ye~ 56 (62)
T PF09336_consen 20 IPAEKLKEPPITMEDFEEALKK-VKPSV--SQEDLKKYEE 56 (62)
T ss_dssp S-GGGB-HHHBCHHHHHHHHHT-CGGSS---HHHHHHHHH
T ss_pred cCcccccCCCCCHHHHHHHHHH-cCCCC--CHHHHHHHHH
Confidence 3445555668999999999999 99997 4445555543
No 367
>PRK10867 signal recognition particle protein; Provisional
Probab=86.49 E-value=2.1 Score=42.76 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=47.5
Q ss_pred ccceeeeeeccCCCCc-hhhh-hhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSL-SNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
.++.-+++.|| +|+ ||.. .++|..+ ....+.....+. .|... .+..+..+.|++..++
T Consensus 98 ~~p~vI~~vG~--~GsGKTTtaakLA~~l---------------~~~~G~kV~lV~-~D~~R--~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 98 KPPTVIMMVGL--QGAGKTTTAGKLAKYL---------------KKKKKKKVLLVA-ADVYR--PAAIEQLKTLGEQIGV 157 (433)
T ss_pred CCCEEEEEECC--CCCcHHHHHHHHHHHH---------------HHhcCCcEEEEE-ccccc--hHHHHHHHHHHhhcCC
Confidence 34677999999 999 9987 2334433 222122222222 22211 1122233445555443
Q ss_pred ccccccccccC-CCCchhHHHHHHhhcCCCCCceEEEEc
Q psy3629 255 QDIDVKPFFFN-PKNTSEFLCTIILEAGPNSGLHIIIFD 292 (358)
Q Consensus 255 ~~~~~~~~~~~-~~~~~e~~~~~~f~~a~~~~p~iif~D 292 (358)
.. |.. ...++...+....+.++.....+|++|
T Consensus 158 ~v------~~~~~~~dp~~i~~~a~~~a~~~~~DvVIID 190 (433)
T PRK10867 158 PV------FPSGDGQDPVDIAKAALEEAKENGYDVVIVD 190 (433)
T ss_pred eE------EecCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 32 221 223555666667777887778899988
No 368
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=86.44 E-value=0.56 Score=46.51 Aligned_cols=56 Identities=34% Similarity=0.474 Sum_probs=35.0
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhh-HHHHHHHHccCCCCC--------CCCEEEEEec
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHD-TVVNQLLSKMDGVER--------LNNILVIGMT 337 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~-~~~~~lL~~ld~~~~--------~~~v~vi~aT 337 (358)
.+.|.+. -||||||||.|+.+.+..+ ..++. -|-..||.-|+|-.- -.++++||+-
T Consensus 242 ~~~~e~~--GIVfiDEiDKIa~~~~~~~--~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~G 306 (441)
T TIGR00390 242 IDAVEQS--GIIFIDEIDKIAKKGESSG--ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAG 306 (441)
T ss_pred HHHHHcC--CEEEEEchhhhcccCCCCC--CCCCccchhccccccccCceeeecceeEECCceeEEecC
Confidence 4444444 4999999999997642211 11332 366779999998421 1457777765
No 369
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=86.40 E-value=2 Score=45.32 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=61.8
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
.+.+.+|.+||.+..+.+.++. |. ..+.|..++.++-...++..++..+ ...++..+..|++.+.| +.+++.+
T Consensus 147 p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEg---i~id~eAL~~Ia~~A~G-slRdAln 219 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEK---IAYEPPALQLLGRAAAG-SMRDALS 219 (709)
T ss_pred CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHHhCC-CHHHHHH
Confidence 3568888899999999998876 77 6778888999999999988887642 22355678889988875 7788888
Q ss_pred HHHHHHH
Q psy3629 87 LVRAAQS 93 (358)
Q Consensus 87 l~~~A~~ 93 (358)
++..+..
T Consensus 220 LLDqaia 226 (709)
T PRK08691 220 LLDQAIA 226 (709)
T ss_pred HHHHHHH
Confidence 8876654
No 370
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=86.18 E-value=0.55 Score=44.99 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=56.9
Q ss_pred HHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC----CCCcchhhHHHHHHHHcc
Q psy3629 247 KWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA----GGNTGVHDTVVNQLLSKM 322 (358)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~----~~~~~~~~~~~~~lL~~l 322 (358)
.+++..+++ +.+++-..-...|.++..+-...|..+.++|++|=+.++.+...-. ..+-+...|+++++|..+
T Consensus 96 ~~a~~lGvd---l~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~l 172 (322)
T PF00154_consen 96 EYAESLGVD---LDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKL 172 (322)
T ss_dssp HHHHHTT-----GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHH
T ss_pred hHHHhcCcc---ccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHH
Confidence 345555554 3344332234567776665555677777899999999998876221 223346789999999999
Q ss_pred CCCCCCCCEEEEEecCCcccc
Q psy3629 323 DGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 323 d~~~~~~~v~vi~aTn~~~~i 343 (358)
-..-...++.+|+.---.+.+
T Consensus 173 t~~l~~~~~~~i~INQ~R~~i 193 (322)
T PF00154_consen 173 TPLLSKSNTTLIFINQVRDKI 193 (322)
T ss_dssp HHHHHTTT-EEEEEEEESSSS
T ss_pred HHHHHhhceEEEEeehHHHHH
Confidence 987666677777765444444
No 371
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.13 E-value=1.6 Score=39.43 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCCCeEEEEecCCCCCc---chhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 6 RLNNILVIGMTNRRDMI---DEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~L---D~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
.+++-+||.+-..|..+ ++.+.. ||. ..+++..|+.+.|.++++....... ...++.-++.|++.+++ +
T Consensus 128 ~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~---~~l~~~v~~~l~~~~~~-~ 201 (219)
T PF00308_consen 128 ESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERG---IELPEEVIEYLARRFRR-D 201 (219)
T ss_dssp HTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT-----S-HHHHHHHHHHTTS-S
T ss_pred hhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhC---CCCcHHHHHHHHHhhcC-C
Confidence 34566777776777754 667777 877 4889999999999999999887753 23456667788888774 7
Q ss_pred HHHHHHHHHHH
Q psy3629 81 GAELEGLVRAA 91 (358)
Q Consensus 81 gadi~~l~~~A 91 (358)
.++|..++..-
T Consensus 202 ~r~L~~~l~~l 212 (219)
T PF00308_consen 202 VRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 372
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.04 E-value=2.8 Score=42.02 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=63.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
++.-++++|+ ||+ ||.. +..+...+ .. .+.....+. .+... .+..+..+.+++..++..
T Consensus 94 ~p~vI~lvG~--~GsGKTTt---aakLA~~L-----------~~-~g~kV~lV~-~D~~R--~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 94 KPQTIMLVGL--QGSGKTTT---AAKLARYF-----------KK-KGLKVGLVA-ADTYR--PAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCeEEEEECC--CCCcHHHH---HHHHHHHH-----------HH-cCCeEEEec-CCCCC--HHHHHHHHHHHHHcCCcE
Confidence 4677999999 999 9987 55443222 11 122222222 22211 122333344555543332
Q ss_pred ccccccccC-CCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 257 IDVKPFFFN-PKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 257 ~~~~~~~~~-~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
|.. ...++...+....+.++.. .+|++|..=. ......++.+|-....-+....-++|+-
T Consensus 154 ------~~~~~~~d~~~i~~~al~~~~~~--DvVIIDTAGr-----------~~~d~~lm~El~~l~~~~~pdevlLVvd 214 (437)
T PRK00771 154 ------YGDPDNKDAVEIAKEGLEKFKKA--DVIIVDTAGR-----------HALEEDLIEEMKEIKEAVKPDEVLLVID 214 (437)
T ss_pred ------EecCCccCHHHHHHHHHHHhhcC--CEEEEECCCc-----------ccchHHHHHHHHHHHHHhcccceeEEEe
Confidence 211 1234445556667776665 6888884311 1123344444333333233434567777
Q ss_pred ecCCccccchh
Q psy3629 336 MTNRRDMIDEA 346 (358)
Q Consensus 336 aTn~~~~iD~a 346 (358)
++...+.++.+
T Consensus 215 a~~gq~av~~a 225 (437)
T PRK00771 215 ATIGQQAKNQA 225 (437)
T ss_pred ccccHHHHHHH
Confidence 76666555543
No 373
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=85.88 E-value=0.52 Score=44.29 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=39.6
Q ss_pred eEEEecCC-CHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q psy3629 34 LQMEISLP-NEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLI 100 (358)
Q Consensus 34 ~~I~v~~P-~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~ 100 (358)
..|++.-| |.++-+..+..+...+. + .....+.|.+.|.|---++|.=++..-+.+.-.+++
T Consensus 75 vei~lrnpwdfeevy~~lhdfar~y~----f-~~e~edylihittgthvaqicwfllaearylparl~ 137 (531)
T COG4650 75 VEIELRNPWDFEEVYACLHDFARGYE----F-QPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI 137 (531)
T ss_pred EEEEecCcccHHHHHHHHHHHhhcCC----C-CCcccceEEEEecCccHHHHHHHHHHHhhhccHhHh
Confidence 45666667 88999999998887763 2 223345577788887777776655443333333444
No 374
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=85.45 E-value=2.5 Score=37.86 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=23.3
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
|-+-|.-.-|+|++||...+-+. -+..+||.+. ...+++++|=..+.|.
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~-------------~~k~ilTR~g---~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPE-------------ELKMILTRIG---EGSKIIITGDPSQIDL 160 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HH-------------HHHHHHTTB----TT-EEEEEE-------
T ss_pred hhcCccccceEEEEecccCCCHH-------------HHHHHHcccC---CCcEEEEecCceeecC
Confidence 66777777799999999886433 2345566553 3446788876665554
No 375
>PRK14974 cell division protein FtsY; Provisional
Probab=85.18 E-value=1.8 Score=41.74 Aligned_cols=132 Identities=12% Similarity=0.053 Sum_probs=63.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+.-++|.|| ||+ ||.. ++.+...+ .. .+..... ...+.. -.|..+..+.+++..++...
T Consensus 140 ~~vi~~~G~--~GvGKTTt---iakLA~~l-----------~~-~g~~V~l-i~~Dt~--R~~a~eqL~~~a~~lgv~v~ 199 (336)
T PRK14974 140 PVVIVFVGV--NGTGKTTT---IAKLAYYL-----------KK-NGFSVVI-AAGDTF--RAGAIEQLEEHAERLGVKVI 199 (336)
T ss_pred CeEEEEEcC--CCCCHHHH---HHHHHHHH-----------HH-cCCeEEE-ecCCcC--cHHHHHHHHHHHHHcCCcee
Confidence 566899999 999 9986 44442111 11 1222222 222321 12344455566666554331
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
. ..+..++-..+....+.++.....+|++|..=.+- ....++.+|-....-+.+...++|+-+|
T Consensus 200 --~---~~~g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~-----------~~~~lm~eL~~i~~~~~pd~~iLVl~a~ 263 (336)
T PRK14974 200 --K---HKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMH-----------TDANLMDELKKIVRVTKPDLVIFVGDAL 263 (336)
T ss_pred --c---ccCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccC-----------CcHHHHHHHHHHHHhhCCceEEEeeccc
Confidence 1 11122332333344445555556799999652221 1233444443222223344457777777
Q ss_pred CCccccchh
Q psy3629 338 NRRDMIDEA 346 (358)
Q Consensus 338 n~~~~iD~a 346 (358)
...+.++.+
T Consensus 264 ~g~d~~~~a 272 (336)
T PRK14974 264 AGNDAVEQA 272 (336)
T ss_pred cchhHHHHH
Confidence 666666544
No 376
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.98 E-value=2.5 Score=43.19 Aligned_cols=78 Identities=15% Similarity=0.064 Sum_probs=59.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+.+|.+|+.+..+.+.++. |. ..++|..++.++-...++..++..+ ...++..++.+++.+.| +..++.++
T Consensus 148 ~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~eg---i~~~~~al~~ia~~s~G-slR~al~l 220 (509)
T PRK14958 148 SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEEN---VEFENAALDLLARAANG-SVRDALSL 220 (509)
T ss_pred CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 468888888889999988887 76 6778888888888888887776642 22355668889988876 77888888
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 221 Ldq~i 225 (509)
T PRK14958 221 LDQSI 225 (509)
T ss_pred HHHHH
Confidence 87664
No 377
>KOG0477|consensus
Probab=84.97 E-value=0.42 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=20.2
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.+|-..+||.|. ||| |++...++..+
T Consensus 479 vRGDinvLL~GD--PGTaKSQFLKY~eK~ 505 (854)
T KOG0477|consen 479 VRGDINVLLLGD--PGTAKSQFLKYAEKT 505 (854)
T ss_pred eccceeEEEecC--CCccHHHHHHHHHhc
Confidence 356678999999 999 99885555544
No 378
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=84.96 E-value=1.7 Score=39.38 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=19.7
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhh
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~ 299 (358)
.+.....+=..++...|.+||||-+..+..
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 344444444444556889999999998753
No 379
>KOG2170|consensus
Probab=84.91 E-value=2.1 Score=40.41 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=47.7
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
.+.|.-+-|+|+ +|| |... ++.+.+.++ ......+++..+.+.. .+..++. .+.+
T Consensus 107 p~KPLvLSfHG~--tGTGKN~V---a~iiA~n~~----------~~Gl~S~~V~~fvat~--hFP~~~~-----ie~Y-- 162 (344)
T KOG2170|consen 107 PRKPLVLSFHGW--TGTGKNYV---AEIIAENLY----------RGGLRSPFVHHFVATL--HFPHASK-----IEDY-- 162 (344)
T ss_pred CCCCeEEEecCC--CCCchhHH---HHHHHHHHH----------hccccchhHHHhhhhc--cCCChHH-----HHHH--
Confidence 344666889999 999 9888 776654443 2333444443221111 0111111 1111
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
-|+.-++|-..++..+-+|.+|||.|.+
T Consensus 163 ---------------k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 163 ---------------KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ---------------HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1234455566777888899999999998
No 380
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.87 E-value=1.1 Score=38.46 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=17.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
...+.++|+ ||. ||.+ +..+.+.
T Consensus 5 ~mki~ITG~--PGvGKtTl---~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGR--PGVGKTTL---VLKIAEK 28 (179)
T ss_pred ceEEEEeCC--CCccHHHH---HHHHHHH
Confidence 456899999 999 9988 5554433
No 381
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.75 E-value=2.2 Score=38.41 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCCC-CceEEEEccchhhhhh-cCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 281 GPNS-GLHIIIFDEIDAICKA-RGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 281 a~~~-~p~iif~DeiD~~~~~-r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
..+. .+.+|+||-+.+++.. ....+ ......+.+.+++..|..+-...++.||.|+.
T Consensus 110 l~~~~~~~liVIDSis~~~~~~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 110 LIESSRIKLVIVDSVTALFRAEFDGRG-ELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HhhcCCeeEEEEeCcHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 3444 8899999999998642 11111 00122356667777776654445667776653
No 382
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=84.75 E-value=1.5 Score=40.76 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHH
Q psy3629 8 NNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHT 54 (358)
Q Consensus 8 ~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l 54 (358)
.+..||+|+|... .+++|+++ || ..++++.|+.++-.+|++.+.
T Consensus 150 ~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 150 PEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 3677999999863 67999999 99 789999999999888988764
No 383
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=84.35 E-value=1.2 Score=39.43 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=26.9
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
....+|++||+.-+ ..+.+..|+.....- ..+++++|=.+....+
T Consensus 92 ~~~~vliVDEasmv-------------~~~~~~~ll~~~~~~--~~klilvGD~~QL~pV 136 (196)
T PF13604_consen 92 PKKDVLIVDEASMV-------------DSRQLARLLRLAKKS--GAKLILVGDPNQLPPV 136 (196)
T ss_dssp TSTSEEEESSGGG--------------BHHHHHHHHHHS-T---T-EEEEEE-TTSHHHC
T ss_pred CcccEEEEeccccc-------------CHHHHHHHHHHHHhc--CCEEEEECCcchhcCC
Confidence 34479999998664 234566777777652 2378888877764433
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=84.30 E-value=0.79 Score=45.51 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=44.7
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhh-HHHHHHHHccCCCC--------CCCCEEEEEec----CCccccc
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHD-TVVNQLLSKMDGVE--------RLNNILVIGMT----NRRDMID 344 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~-~~~~~lL~~ld~~~--------~~~~v~vi~aT----n~~~~iD 344 (358)
-+.|.+. -||||||||.|+.+.+..+ . .++. -|-..||.-|+|-. .-+++++||+- ..|..|=
T Consensus 244 i~~ae~~--GIVfiDEiDKIa~~~~~~~-~-DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlI 319 (443)
T PRK05201 244 IERVEQN--GIVFIDEIDKIAARGGSSG-P-DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLI 319 (443)
T ss_pred HHHHHcC--CEEEEEcchhhcccCCCCC-C-CCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhcc
Confidence 4444444 4999999999998743221 1 2333 36677999999832 11467788764 3455555
Q ss_pred hhcCCCCCCccc
Q psy3629 345 EALLRPGRLEVS 356 (358)
Q Consensus 345 ~a~lr~GRfd~~ 356 (358)
|.+.- ||=+.
T Consensus 320 PEl~G--R~Pi~ 329 (443)
T PRK05201 320 PELQG--RFPIR 329 (443)
T ss_pred HHHhC--ccceE
Confidence 66654 77544
No 385
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.17 E-value=5.4 Score=43.40 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=59.2
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|++|+.+..|.+.++. |. .++.|..++.++-...|+..+.... ...++..++.|++.+.| +.+++-+
T Consensus 147 P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~G-d~R~ALn 219 (944)
T PRK14949 147 PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANG-SMRDALS 219 (944)
T ss_pred CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568888889999999988887 66 7889999999998888888776531 23355678888888887 5666666
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
+|..+.
T Consensus 220 LLdQal 225 (944)
T PRK14949 220 LTDQAI 225 (944)
T ss_pred HHHHHH
Confidence 666544
No 386
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=84.10 E-value=2.6 Score=40.01 Aligned_cols=51 Identities=16% Similarity=0.313 Sum_probs=37.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...-|++||++|.+- ....|.||..|+.... .+++|.+|+.|+.|=+.+.-
T Consensus 89 ~~~KvvII~~~e~m~-------------~~a~NaLLK~LEEPp~--~t~~il~~~~~~kll~TI~S 139 (299)
T PRK07132 89 SQKKILIIKNIEKTS-------------NSLLNALLKTIEEPPK--DTYFLLTTKNINKVLPTIVS 139 (299)
T ss_pred CCceEEEEecccccC-------------HHHHHHHHHHhhCCCC--CeEEEEEeCChHhChHHHHh
Confidence 466799999987762 2346789999997554 67777777788888887654
No 387
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=84.03 E-value=7.3 Score=40.67 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=37.8
Q ss_pred CeEEEEecCCCC---CcchhhcCCCCCceEEEec-CCCHHHHHHHHHHHHh
Q psy3629 9 NILVIGMTNRRD---MIDEALLRPGRLELQMEIS-LPNEDGRVQILQIHTA 55 (358)
Q Consensus 9 ~V~vI~aTN~p~---~LD~Al~R~GRfd~~I~v~-~P~~~~R~~il~~~l~ 55 (358)
++.||+++|..+ .+.++++. ||+.++.+. +|+..+|.+|++..+.
T Consensus 127 ~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 127 KFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred ceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHHH
Confidence 588999998865 79999999 999998885 4678889999988763
No 388
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=83.66 E-value=7.8 Score=42.04 Aligned_cols=78 Identities=12% Similarity=-0.028 Sum_probs=57.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.++.|-+.++. |. .+++|..++.++-..+|+..++... ...++..+..+++.+.| +..++.++
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EG---v~id~eal~lLa~~sgG-dlR~Al~e 221 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEG---VPVEPGVLPLVIRAGGG-SVRDSLSV 221 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 568888888999999998887 76 7889999999988888888776542 22245566778877776 66666666
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++..+
T Consensus 222 LEKLi 226 (824)
T PRK07764 222 LDQLL 226 (824)
T ss_pred HHHHH
Confidence 65543
No 389
>KOG1942|consensus
Probab=83.61 E-value=0.46 Score=44.66 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=38.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHH
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQ 245 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 245 (358)
.-+++|+.|| ||| ||.+ |-++.. ....+.||....++++.+.-+-+++..
T Consensus 63 aGravLlaGp--pgtGKTAl---Alaisq-------------ELG~kvPFcpmvgSEvyS~EvKKTEvL 113 (456)
T KOG1942|consen 63 AGRAVLLAGP--PGTGKTAL---ALAISQ-------------ELGPKVPFCPMVGSEVYSNEVKKTEVL 113 (456)
T ss_pred cCcEEEEecC--CCCchhHH---HHHHHH-------------HhCCCCCcccccchhhhhhhhhHHHHH
Confidence 3577999999 999 9999 877722 334567888888888877777777654
No 390
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.58 E-value=7.8 Score=40.34 Aligned_cols=79 Identities=9% Similarity=0.021 Sum_probs=58.3
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|.+|+.++.|.+.++. |- .+++|..++.++-.+.++.+++..+ ...++..+..++..+.| +.+++.+
T Consensus 146 p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~eg---i~i~~~al~~Ia~~s~G-dlR~aln 218 (584)
T PRK14952 146 PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEG---VVVDDAVYPLVIRAGGG-SPRDTLS 218 (584)
T ss_pred CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3578888899999999999987 74 7899999999998888888877642 22345556667776654 6666666
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
+++..+
T Consensus 219 ~Ldql~ 224 (584)
T PRK14952 219 VLDQLL 224 (584)
T ss_pred HHHHHH
Confidence 666554
No 391
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.38 E-value=6.8 Score=40.43 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=58.0
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+.+|++|+.+..+.+.++. |. ..++|..++.++-...++..++..+ ...++..+..++..+.| +.+++-+.
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~G-dlR~alnl 220 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKG-SLRDALSL 220 (546)
T ss_pred CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467777777888888888877 76 8899999999998888887776542 23356667888888864 66666666
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 221 Lek~i 225 (546)
T PRK14957 221 LDQAI 225 (546)
T ss_pred HHHHH
Confidence 66554
No 392
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=83.16 E-value=2.8 Score=38.13 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=29.4
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD 323 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld 323 (358)
+.+.....+.+......+..|+||-+..+.-. . .. ...+.+.+|...+.
T Consensus 110 ~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~-~---~~--~~r~~l~~l~~~lk 158 (237)
T TIGR03877 110 DVRELIDVLRQAIRDINAKRVVIDSVTTLYIT-K---PA--MARSIVMQLKRVLS 158 (237)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEcChhHhhcC-C---hH--HHHHHHHHHHHHHH
Confidence 34555555566556667889999999987532 1 11 22345566666554
No 393
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.05 E-value=4.3 Score=34.72 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=11.6
Q ss_pred eeeeccCCCCc-hhhh
Q psy3629 182 VLLEVDKVPTD-ELSL 196 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l 196 (358)
+++.|| ||+ ||.+
T Consensus 3 ~~~~G~--~G~GKTt~ 16 (173)
T cd03115 3 ILLVGL--QGVGKTTT 16 (173)
T ss_pred EEEECC--CCCCHHHH
Confidence 578999 999 9988
No 394
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=82.91 E-value=3.4 Score=41.27 Aligned_cols=130 Identities=12% Similarity=0.075 Sum_probs=62.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
++.-+++.|| +|+ ||.. +..+...+ . ..+.....+ +.|... .|..+..+.+++..++.+
T Consensus 99 ~~~vi~lvG~--~GvGKTTt---aaKLA~~l-----------~-~~G~kV~lV-~~D~~R--~aA~eQLk~~a~~~~vp~ 158 (429)
T TIGR01425 99 KQNVIMFVGL--QGSGKTTT---CTKLAYYY-----------Q-RKGFKPCLV-CADTFR--AGAFDQLKQNATKARIPF 158 (429)
T ss_pred CCeEEEEECC--CCCCHHHH---HHHHHHHH-----------H-HCCCCEEEE-cCcccc--hhHHHHHHHHhhccCCeE
Confidence 3566899999 999 9887 44442111 1 112222222 233321 233444445555543332
Q ss_pred ccccccccC-CCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 257 IDVKPFFFN-PKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 257 ~~~~~~~~~-~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
|.. ...++...+...++.++...-.+||+|= + | .......++.+|-...+-..+..-++|+-
T Consensus 159 ------~~~~~~~dp~~i~~~~l~~~~~~~~DvViIDT---------a-G-r~~~d~~lm~El~~i~~~~~p~e~lLVld 221 (429)
T TIGR01425 159 ------YGSYTESDPVKIASEGVEKFKKENFDIIIVDT---------S-G-RHKQEDSLFEEMLQVAEAIQPDNIIFVMD 221 (429)
T ss_pred ------EeecCCCCHHHHHHHHHHHHHhCCCCEEEEEC---------C-C-CCcchHHHHHHHHHHhhhcCCcEEEEEec
Confidence 211 1123444444556667666668999882 1 1 11122344444444444344433466665
Q ss_pred ecCCccccc
Q psy3629 336 MTNRRDMID 344 (358)
Q Consensus 336 aTn~~~~iD 344 (358)
+|.-.+.++
T Consensus 222 a~~Gq~a~~ 230 (429)
T TIGR01425 222 GSIGQAAEA 230 (429)
T ss_pred cccChhHHH
Confidence 654444433
No 395
>PRK04132 replication factor C small subunit; Provisional
Probab=82.32 E-value=7.4 Score=42.25 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=52.5
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
.+++.+|++||.+..+-++++. |- ..+.|+.|+.++-...++....+.. ...++..+..++..+.|
T Consensus 658 ~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Eg---i~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 658 SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEG---LELTEEGLQAILYIAEG 723 (846)
T ss_pred CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCC
Confidence 4678999999999999999987 76 7889999998888888887766431 12356678889988877
No 396
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.16 E-value=2.1 Score=42.34 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=63.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+.-++|.|| +|+ ||.+ +..+...+ .. .+.... +...|... +|..+..+.+++..++...
T Consensus 241 ~~vI~LVGp--tGvGKTTT---iaKLA~~L-----------~~-~GkkVg-lI~aDt~R--iaAvEQLk~yae~lgipv~ 300 (436)
T PRK11889 241 VQTIALIGP--TGVGKTTT---LAKMAWQF-----------HG-KKKTVG-FITTDHSR--IGTVQQLQDYVKTIGFEVI 300 (436)
T ss_pred CcEEEEECC--CCCcHHHH---HHHHHHHH-----------HH-cCCcEE-EEecCCcc--hHHHHHHHHHhhhcCCcEE
Confidence 456899999 999 9987 55552211 11 111111 22222211 4555555667776655432
Q ss_pred cccccccCCCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
.. .++..+......++. ....+||+|-.=. . ......+..+...++...+...++|+-+
T Consensus 301 v~---------~d~~~L~~aL~~lk~~~~~DvVLIDTaGR-----s------~kd~~lm~EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 301 AV---------RDEAAMTRALTYFKEEARVDYILIDTAGK-----N------YRASETVEEMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred ec---------CCHHHHHHHHHHHHhccCCCEEEEeCccc-----c------CcCHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 11 133444555555543 3457899883211 1 1223445666665554444444677766
Q ss_pred cCCccc
Q psy3629 337 TNRRDM 342 (358)
Q Consensus 337 Tn~~~~ 342 (358)
|.....
T Consensus 361 Ttk~~d 366 (436)
T PRK11889 361 SMKSKD 366 (436)
T ss_pred ccChHH
Confidence 655544
No 397
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.14 E-value=5 Score=41.93 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=50.9
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
..++++|++||.+..+.+.+++ |. ..|+|+.++.++-..+|+..+.... ...++..++.+++.+.|
T Consensus 147 ~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~eg---i~id~eal~lIA~~s~G 212 (624)
T PRK14959 147 PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREG---VDYDPAAVRLIARRAAG 212 (624)
T ss_pred CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC
Confidence 3578888999999999998887 77 5789999999998888887776542 12355667788887765
No 398
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.00 E-value=3.9 Score=40.35 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=66.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+.-+++.|| +|+ ||.. +..+...+... +...+.....+..-.. -.|..+..+.|++..++..
T Consensus 174 ~~vi~lvGp--tGvGKTTT---~aKLA~~~~~~--------~~~~g~~V~lit~Dt~---R~aa~eQL~~~a~~lgvpv- 236 (388)
T PRK12723 174 KRVFILVGP--TGVGKTTT---IAKLAAIYGIN--------SDDKSLNIKIITIDNY---RIGAKKQIQTYGDIMGIPV- 236 (388)
T ss_pred CeEEEEECC--CCCCHHHH---HHHHHHHHHhh--------hccCCCeEEEEeccCc---cHHHHHHHHHHhhcCCcce-
Confidence 456899999 999 9877 44442111100 0011222222221111 2344455566677655532
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEEEEEe
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNILVIGM 336 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~a 336 (358)
... .....+...+... ....+|++|++...- . . ..-+..+...++.... ...++|+-+
T Consensus 237 --~~~------~~~~~l~~~L~~~--~~~DlVLIDTaGr~~-----~--~----~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 237 --KAI------ESFKDLKEEITQS--KDFDLVLVDTIGKSP-----K--D----FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --Eee------CcHHHHHHHHHHh--CCCCEEEEcCCCCCc-----c--C----HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 111 1223344444444 345799999876531 0 1 1124444444444332 246899999
Q ss_pred cCCccccchhcC
Q psy3629 337 TNRRDMIDEALL 348 (358)
Q Consensus 337 Tn~~~~iD~a~l 348 (358)
|.....+...+-
T Consensus 296 t~~~~~~~~~~~ 307 (388)
T PRK12723 296 TTKTSDVKEIFH 307 (388)
T ss_pred CCCHHHHHHHHH
Confidence 998888875543
No 399
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=81.94 E-value=1 Score=39.84 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.3
Q ss_pred hhcCCCCCceEEEEccc
Q psy3629 278 LEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 278 f~~a~~~~p~iif~Dei 294 (358)
.+.+-...|.+|++||+
T Consensus 67 i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 67 LKAALRQDPDVILVGEM 83 (198)
T ss_pred HHHHhcCCcCEEEEcCC
Confidence 45555567999999998
No 400
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=81.78 E-value=12 Score=37.20 Aligned_cols=101 Identities=25% Similarity=0.245 Sum_probs=67.4
Q ss_pred CCCeEEEEecCCCCCcc---hhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDMID---EALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD---~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.++-+|+.+-..|..|. |-+.. ||. ..+++..|+.+.|..+|+......+ ...++.-..-+|.... -+.
T Consensus 207 ~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~---~~i~~ev~~~la~~~~-~nv 280 (408)
T COG0593 207 NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRG---IEIPDEVLEFLAKRLD-RNV 280 (408)
T ss_pred cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhh-ccH
Confidence 34466777766777654 78888 887 6678889999999999998665542 2345566677887766 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+++..++......+... ...+|.....++++.
T Consensus 281 ReLegaL~~l~~~a~~~----------------~~~iTi~~v~e~L~~ 312 (408)
T COG0593 281 RELEGALNRLDAFALFT----------------KRAITIDLVKEILKD 312 (408)
T ss_pred HHHHHHHHHHHHHHHhc----------------CccCcHHHHHHHHHH
Confidence 77777666554443322 235666666666655
No 401
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=81.77 E-value=2.1 Score=41.54 Aligned_cols=104 Identities=18% Similarity=0.184 Sum_probs=62.3
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHH-HHHHhhhccccccc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQ-RKWAELSLHQDIDV 259 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~ 259 (358)
.|++|. .|| |..+ |+++-- ..+..+.+|+.+++..+-.. ..+||.- .+-....|.+
T Consensus 230 LLI~Ge--TGTGKdLl---AkaCH~------------~S~R~~~pFlalNCA~lPe~-~aEsElFG~apg~~gk~G---- 287 (511)
T COG3283 230 LLITGE--TGTGKDLL---AKACHL------------ASPRHSKPFLALNCASLPED-AAESELFGHAPGDEGKKG---- 287 (511)
T ss_pred eEEecC--CCchHHHH---HHHHhh------------cCcccCCCeeEeecCCCchh-HhHHHHhcCCCCCCCccc----
Confidence 799999 999 9999 887721 15667888999888776211 1111111 0000112222
Q ss_pred cccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC-CC----CCC----CC
Q psy3629 260 KPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD-GV----ERL----NN 330 (358)
Q Consensus 260 ~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld-~~----~~~----~~ 330 (358)
+ |+.|.... +|+|||-.+-+. +-..||..+. |- ... -+
T Consensus 288 --f---------------fE~AngGT---VlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 288 --F---------------FEQANGGT---VLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred --h---------------hhhccCCe---EEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceEEEE
Confidence 2 77776554 899999776433 4456777764 32 111 24
Q ss_pred EEEEEecCCc
Q psy3629 331 ILVIGMTNRR 340 (358)
Q Consensus 331 v~vi~aTn~~ 340 (358)
|=|||||..+
T Consensus 335 VRVIcatq~n 344 (511)
T COG3283 335 VRVICATQVN 344 (511)
T ss_pred EEEEeccccc
Confidence 8899999654
No 402
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=81.76 E-value=4.1 Score=41.76 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=15.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+=+||+|| ||| ||.. ++.+
T Consensus 46 ~iLlLtGP--~G~GKttt---v~~L 65 (519)
T PF03215_consen 46 RILLLTGP--SGCGKTTT---VKVL 65 (519)
T ss_pred ceEEEECC--CCCCHHHH---HHHH
Confidence 34788999 999 9988 7766
No 403
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=81.70 E-value=7.5 Score=40.62 Aligned_cols=78 Identities=18% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+.+|.+|+.++.+.+.++. |. ..++|..|+.++-...++..+++.. ...++..++.++..+.| +..++.+.
T Consensus 161 ~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~keg---i~i~~eAl~lIa~~a~G-dlr~al~~ 233 (598)
T PRK09111 161 PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEG---VEVEDEALALIARAAEG-SVRDGLSL 233 (598)
T ss_pred CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 467777888888888888887 76 6899999999999988888876542 22345667778888776 66777666
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 234 Ldkli 238 (598)
T PRK09111 234 LDQAI 238 (598)
T ss_pred HHHHH
Confidence 66553
No 404
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=81.25 E-value=1.8 Score=38.20 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
...|-+++|||...+...-.... .......+.++... ...-+|.+|.+|-+|+.
T Consensus 152 ~~~~i~~~iDe~~~l~~~~~~~~--~~~~~~~l~~i~~~----gR~~Gi~li~~~Q~p~~ 205 (205)
T PF01580_consen 152 ELPPIFIVIDEFAALRDSAPDDS--KKEIMDLLARIARK----GRAAGIHLILATQRPSS 205 (205)
T ss_dssp ---EEEEEECTHHHHHHHHHHH------HHHHHHHHHHH----CGGGTEEEEEEESS-ST
T ss_pred cCchHHHHhhhHHHHHhhcchhh--HHHHHHHHHHHHHH----HHhcCEEEEEEeCCCCC
Confidence 45667899999999987632211 00122333344433 22347999999999863
No 405
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.21 E-value=2.9 Score=41.65 Aligned_cols=129 Identities=14% Similarity=0.042 Sum_probs=62.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
..-+++.|| +|+ ||.+ +..+...+ ....+.. +.+...|.. -.+..+..+.+|+..++...
T Consensus 223 ~~vi~lvGp--tGvGKTTt---aaKLA~~~-----------~~~~G~~-V~Lit~Dt~--R~aA~eQLk~yAe~lgvp~~ 283 (432)
T PRK12724 223 RKVVFFVGP--TGSGKTTS---IAKLAAKY-----------FLHMGKS-VSLYTTDNY--RIAAIEQLKRYADTMGMPFY 283 (432)
T ss_pred CeEEEEECC--CCCCHHHH---HHHHHHHH-----------HHhcCCe-EEEecccch--hhhHHHHHHHHHHhcCCCee
Confidence 345889999 999 9988 55552111 0111111 111222221 11223344556666555432
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC---CCCCCEEEE
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV---ERLNNILVI 334 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~---~~~~~v~vi 334 (358)
.... +..+.+.++.....+|+||= .+ |.+ .....+..|...++-. .....++|+
T Consensus 284 ~~~~------------~~~l~~~l~~~~~D~VLIDT----aG-r~~------rd~~~l~eL~~~~~~~~~~~~~e~~LVL 340 (432)
T PRK12724 284 PVKD------------IKKFKETLARDGSELILIDT----AG-YSH------RNLEQLERMQSFYSCFGEKDSVENLLVL 340 (432)
T ss_pred ehHH------------HHHHHHHHHhCCCCEEEEeC----CC-CCc------cCHHHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 2211 12223333345567899882 11 111 1123344444443322 233468999
Q ss_pred EecCCccccchhcCC
Q psy3629 335 GMTNRRDMIDEALLR 349 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr 349 (358)
-+|...+.+..++-+
T Consensus 341 sAt~~~~~~~~~~~~ 355 (432)
T PRK12724 341 SSTSSYHHTLTVLKA 355 (432)
T ss_pred eCCCCHHHHHHHHHH
Confidence 999998877766543
No 406
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=80.96 E-value=4.3 Score=37.98 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=29.1
Q ss_pred HhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
++..++...|.||++||+- . ...+..++..+. .++.+|+||..++.
T Consensus 186 ~~~~i~~~~P~villDE~~----~-----------~e~~~~l~~~~~-----~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIG----R-----------EEDVEALLEALH-----AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCC----c-----------HHHHHHHHHHHh-----CCCEEEEEechhHH
Confidence 5777888899999999941 0 122444555543 14567888865443
No 407
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=80.63 E-value=6.1 Score=35.93 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.+.-+||||++...|.+.++- ||.....+..=+.++-..|++.....+. ...++....++|.++.| ++.--.++
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTT-SHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCC-ChHHHHHH
Confidence 357899999999999999998 9999888888888888888886555442 22355667889999987 45433333
No 408
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=80.29 E-value=8.7 Score=33.40 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=30.3
Q ss_pred HhhcCCCCC--ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 277 ILEAGPNSG--LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 277 ~f~~a~~~~--p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.+.+|-... |.++++||--+-+.. ...+.+.++|.++- . .+..||.+|..++.+
T Consensus 97 ~laral~~~~~p~llLlDEPt~~LD~---------~~~~~l~~~l~~~~---~-~g~tvIivSH~~~~~ 152 (176)
T cd03238 97 KLASELFSEPPGTLFILDEPSTGLHQ---------QDINQLLEVIKGLI---D-LGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHhhCCCCCEEEEeCCcccCCH---------HHHHHHHHHHHHHH---h-CCCEEEEEeCCHHHH
Confidence 344454566 999999997553322 22333444444442 1 134567777777655
No 409
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.28 E-value=11 Score=36.64 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
.++++|..|+.|+.+.|.++. |. ..+.++.|+.++-..+++...... . .++..+..++..+.|-.
T Consensus 170 ~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~p 234 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSV 234 (351)
T ss_pred CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCH
Confidence 457777778999999999887 87 699999999999999988743211 1 22444667777777643
No 410
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=80.21 E-value=7 Score=41.78 Aligned_cols=82 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCCeEEEEecCC--CCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccc----cccccCchhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNR--RDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMR----SYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~--p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~----~~~~~~~~~~l~~la~~t~g~s 80 (358)
.+.+++|++|+. ...+++++++ |. ..+.|+.++.+++..+++..+.... ......++..++.|++.+.| .
T Consensus 135 ~g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D 210 (725)
T PRK13341 135 NGTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-D 210 (725)
T ss_pred CceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-C
Confidence 356777777643 3578999998 64 5789999999999999998886321 11122355667888887754 5
Q ss_pred HHHHHHHHHHHH
Q psy3629 81 GAELEGLVRAAQ 92 (358)
Q Consensus 81 gadi~~l~~~A~ 92 (358)
.+++.++++.++
T Consensus 211 ~R~lln~Le~a~ 222 (725)
T PRK13341 211 ARSLLNALELAV 222 (725)
T ss_pred HHHHHHHHHHHH
Confidence 566666666554
No 411
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=79.92 E-value=2.7 Score=40.68 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=39.3
Q ss_pred CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHH
Q psy3629 6 RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIH 53 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~ 53 (358)
+..++++|.+|++|+.|.|.+++ |- ..+.|++|+.++..+.|...
T Consensus 159 Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 45679999999999999999998 88 79999999999888888653
No 412
>PRK14700 recombination factor protein RarA; Provisional
Probab=79.91 E-value=6.7 Score=37.11 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=54.8
Q ss_pred CCCeEEEEec--CCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccc---cccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMT--NRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMR---SYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aT--N~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~---~~~~~~~~~~l~~la~~t~g~sg 81 (358)
++.|++|||| |--..|.+|++. |- +.+.+...+.++-..+++.-+.... ......++.-++.|+..+.|
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G--- 79 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG--- 79 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC---
Confidence 5678888887 445689999998 87 8899999999999999998886421 11122456667777776655
Q ss_pred HHHHHHHH
Q psy3629 82 AELEGLVR 89 (358)
Q Consensus 82 adi~~l~~ 89 (358)
|.+....
T Consensus 80 -DaR~aLN 86 (300)
T PRK14700 80 -DCRKILN 86 (300)
T ss_pred -HHHHHHH
Confidence 7666555
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=79.79 E-value=3.5 Score=36.56 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
+..+++.+....|.+|++||.=+=... . ....+...++..+..- +..+|.+|..++.+..
T Consensus 94 ~~~iL~~~~~~~p~llllDEp~~glD~------~--~~~~l~~~ll~~l~~~----~~tiiivTH~~~~~~~ 153 (199)
T cd03283 94 LKEIVEKAKKGEPVLFLLDEIFKGTNS------R--ERQAASAAVLKFLKNK----NTIGIISTHDLELADL 153 (199)
T ss_pred HHHHHHhccCCCCeEEEEecccCCCCH------H--HHHHHHHHHHHHHHHC----CCEEEEEcCcHHHHHh
Confidence 566688887778999999996331111 0 1223445566665321 3578888888777654
No 414
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=79.72 E-value=3.7 Score=39.23 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=37.7
Q ss_pred chhHHHH---HHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh-hHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 269 TSEFLCT---IILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH-DTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 269 ~~e~~~~---~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~-~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
.+|.... .+-....+..+.+|+||=|-+++.. ...+..+... .+.+++++..|-.+-...++.||.| |+.
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~-~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvit-Nqv 245 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV-DFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVT-NQV 245 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh-hccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE-Cce
Confidence 4555443 2322334457889999999988753 1111111111 2346777777766644445655554 443
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=79.67 E-value=6.1 Score=39.50 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=16.9
Q ss_pred chhHHHHHHhhcCCCCCceEEEEc
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFD 292 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~D 292 (358)
.+........+.++.....+|++|
T Consensus 166 ~P~~i~~~al~~~~~~~~DvVIID 189 (428)
T TIGR00959 166 SPVEIARRALEYAKENGFDVVIVD 189 (428)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345555666777777777789988
No 416
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=79.66 E-value=2.4 Score=38.79 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.4
Q ss_pred HhhcCCCCCceEEEEccchh
Q psy3629 277 ILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~ 296 (358)
+....|+.+|-|+++|||-.
T Consensus 210 mmmaIrsm~PEViIvDEIGt 229 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGT 229 (308)
T ss_pred HHHHHHhcCCcEEEEecccc
Confidence 35667889999999999854
No 417
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=79.55 E-value=4.8 Score=39.73 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.2
Q ss_pred CCCceEEEEccchhhhhhc
Q psy3629 283 NSGLHIIIFDEIDAICKAR 301 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r 301 (358)
.....+||||||..++...
T Consensus 254 ~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 254 HGKDVVILLDSITRLARAY 272 (416)
T ss_pred cCCCEEEEEEChHHHHHHH
Confidence 3567899999999998653
No 418
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=79.21 E-value=12 Score=36.29 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=38.2
Q ss_pred CCeEEEEecCCCC-CcchhhcCCCCCceEEEecCCC-HHHHHHHHHHHH
Q psy3629 8 NNILVIGMTNRRD-MIDEALLRPGRLELQMEISLPN-EDGRVQILQIHT 54 (358)
Q Consensus 8 ~~V~vI~aTN~p~-~LD~Al~R~GRfd~~I~v~~P~-~~~R~~il~~~l 54 (358)
.++++|++.|-.+ .+.++++. ||..++.+..|+ .+.|.+|++...
T Consensus 186 ~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 3688888888655 69999999 999999999997 699999998754
No 419
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=79.05 E-value=2.1 Score=43.48 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=25.7
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhh
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~ 299 (358)
..|..+..+.+..++..|.+|+||=+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 4577888888888888999999999988754
No 420
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.59 E-value=6.2 Score=37.98 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=47.9
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
..++++|.+|+.++.|.|.++. |- ..+.|+.|+.++-.+.++..... ..+.....++..+.|-.+
T Consensus 134 p~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~-------~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 134 SGDTVLLLISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQALPE-------SDERERIELLTLAGGSPL 198 (328)
T ss_pred CCCeEEEEEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhccc-------CChHHHHHHHHHcCCCHH
Confidence 4578999999999999999998 87 55999999999888777754311 123445566777776443
No 421
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.49 E-value=5.3 Score=41.05 Aligned_cols=78 Identities=22% Similarity=0.104 Sum_probs=57.5
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+.+|.+|+.+..+.+.++. |. ..++|..|+.++-...++..++... ...++..+..+++.+.| +.+++.++
T Consensus 148 ~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~eg---i~~~~~al~~la~~s~G-slr~al~l 220 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQEN---IPFDATALQLLARAAAG-SMRDALSL 220 (527)
T ss_pred CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 468888888888888888776 66 7889999999998888887776532 12345567778888775 56666677
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
+..+.
T Consensus 221 ldqai 225 (527)
T PRK14969 221 LDQAI 225 (527)
T ss_pred HHHHH
Confidence 66554
No 422
>PLN03025 replication factor C subunit; Provisional
Probab=78.28 E-value=9.8 Score=36.25 Aligned_cols=64 Identities=11% Similarity=-0.036 Sum_probs=49.4
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
.+.+|.+||.++.+.++++. |. ..++|+.|+.++....++...++.+ ...++..++.++..+.|
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~eg---i~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEK---VPYVPEGLEAIIFTADG 192 (319)
T ss_pred CceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC
Confidence 45677788898999999987 76 5899999999999999988876642 23356677888887664
No 423
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=78.18 E-value=3.9 Score=35.34 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=32.2
Q ss_pred HHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCc--chhhHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNT--GVHDTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~--~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
.+.+.++... .+.+|+||-+..+...--..+... ......+..|+..+.... +-+|.++|-.
T Consensus 63 ~l~~~l~~~~--~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~viVsnEv 126 (169)
T cd00544 63 DLVSALKELD--PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKP----GTLILVSNEV 126 (169)
T ss_pred HHHHHHHhcC--CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCC----CcEEEEECCc
Confidence 4444454333 567999999999987643221110 111234455666665432 3344556643
No 424
>KOG0481|consensus
Probab=78.00 E-value=1.9 Score=43.52 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.4
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+|-..+||-|. ||| |+++..|...+
T Consensus 362 RGDINVLLLGD--PgtAKSQlLKFvEkv 387 (729)
T KOG0481|consen 362 RGDINVLLLGD--PGTAKSQLLKFVEKV 387 (729)
T ss_pred ccceeEEEecC--CchhHHHHHHHHHhc
Confidence 56678999999 999 99996666555
No 425
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=2.8 Score=41.27 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=55.6
Q ss_pred eeeeeeccCCCCc-hhhh-hhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSL-SNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
.-+|+-|. ||. |+.| .+.+..+ +... ..+++.+.+...++- .-|.-++++.
T Consensus 94 s~iLIgGd--PGIGKSTLLLQva~~l---------------A~~~--~vLYVsGEES~~Qik-------lRA~RL~~~~- 146 (456)
T COG1066 94 SVILIGGD--PGIGKSTLLLQVAARL---------------AKRG--KVLYVSGEESLQQIK-------LRADRLGLPT- 146 (456)
T ss_pred cEEEEccC--CCCCHHHHHHHHHHHH---------------HhcC--cEEEEeCCcCHHHHH-------HHHHHhCCCc-
Confidence 34899999 999 9766 3555555 3333 445554444422211 1222222221
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCC
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGT 303 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~ 303 (358)
.+..=.+|-.+..+.+...+..|.+++||=|..++...-.
T Consensus 147 ------~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~ 186 (456)
T COG1066 147 ------NNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEIT 186 (456)
T ss_pred ------cceEEehhcCHHHHHHHHHhcCCCEEEEeccceeeccccc
Confidence 1111235667777799999999999999999999877533
No 426
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=77.46 E-value=0.94 Score=44.99 Aligned_cols=20 Identities=0% Similarity=-0.258 Sum_probs=17.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++.|| +|| ||.+ +.++
T Consensus 209 ~~Nli~lGp--~GTGKThl---a~~l 229 (449)
T TIGR02688 209 NYNLIELGP--KGTGKSYI---YNNL 229 (449)
T ss_pred CCcEEEECC--CCCCHHHH---HHHH
Confidence 466999999 999 9998 7776
No 427
>PRK04328 hypothetical protein; Provisional
Probab=76.98 E-value=5.4 Score=36.67 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=27.1
Q ss_pred hHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC
Q psy3629 271 EFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD 323 (358)
Q Consensus 271 e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld 323 (358)
+.....+-+..++..|.+|+||=+-.+.-. . .. ...+.+.+|...+.
T Consensus 114 ~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-~---~~--~~r~~~~~l~~~lk 160 (249)
T PRK04328 114 RELIDVLRQAIKDIGAKRVVIDSVSTLYLT-K---PA--MARSIVMQLKRVLS 160 (249)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeChhHhhcC-C---hH--HHHHHHHHHHHHHH
Confidence 344444455555567889999999887432 1 11 22345666666654
No 428
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=76.91 E-value=1.1 Score=43.12 Aligned_cols=44 Identities=11% Similarity=0.050 Sum_probs=38.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-ccccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFS 242 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s 242 (358)
|+.+|.-|| .|. ||.+ |+.+ |.-.+.||+++-+.-+. -+|+|..
T Consensus 50 PKNILMIGp--TGVGKTEI---ARRL---------------Akl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 50 PKNILMIGP--TGVGKTEI---ARRL---------------AKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred ccceEEECC--CCCcHHHH---HHHH---------------HHHhCCCeEEEEeeeeeeccccccc
Confidence 788999999 999 9999 9999 88899999999887776 6788873
No 429
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=76.81 E-value=7 Score=37.88 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCCceEEEEccchhhhhhcCCCCCCc-chhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 282 PNSGLHIIIFDEIDAICKARGTAGGNT-GVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 282 ~~~~p~iif~DeiD~~~~~r~~~~~~~-~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
.+..+.+|++|=|-+++..- ..+... ....+.+++++..|-.+-...++.||.|.
T Consensus 218 ~~~~~~LvVIDSital~r~~-~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 218 AEEPFRLLIVDSVIALFRVD-FTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HhcCCCEEEEeCcHHhhhcc-ccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 34568999999998886431 111111 01234466776666655444456666553
No 430
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=76.54 E-value=3.1 Score=36.76 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=28.1
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
.+++|||.|.=+-. ....+++ .+|.++.. .++=||.||-.|..||
T Consensus 259 ~illiDEpE~~LHp--------~~q~~l~-~~l~~~~~----~~~QviitTHSp~ild 303 (303)
T PF13304_consen 259 SILLIDEPENHLHP--------SWQRKLI-ELLKELSK----KNIQVIITTHSPFILD 303 (303)
T ss_dssp SEEEEESSSTTSSH--------HHHHHHH-HHHHHTGG----GSSEEEEEES-GGG--
T ss_pred eEEEecCCcCCCCH--------HHHHHHH-HHHHhhCc----cCCEEEEeCccchhcC
Confidence 89999999985432 1445555 44444433 3456799999999886
No 431
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.53 E-value=4.2 Score=38.05 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=14.0
Q ss_pred cceeeeeeccCCCCc-hhhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l 196 (358)
++.-+++.|| ||+ ||..
T Consensus 71 ~~~vi~l~G~--~G~GKTTt 88 (272)
T TIGR00064 71 KPNVILFVGV--NGVGKTTT 88 (272)
T ss_pred CCeEEEEECC--CCCcHHHH
Confidence 3566888899 999 9987
No 432
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=76.50 E-value=1.7 Score=45.38 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.0
Q ss_pred CEEEEEecCCc--cccchhcCCCCCCc
Q psy3629 330 NILVIGMTNRR--DMIDEALLRPGRLE 354 (358)
Q Consensus 330 ~v~vi~aTn~~--~~iD~a~lr~GRfd 354 (358)
++.||+++|.. ..+||+++. ||+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~ 292 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIR 292 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--Hhc
Confidence 57889999875 468999998 998
No 433
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=76.40 E-value=2 Score=40.92 Aligned_cols=24 Identities=17% Similarity=0.106 Sum_probs=18.3
Q ss_pred HHHHHhhcCCCCCceEEEEccchh
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
....++..+-...|.+|++||+=.
T Consensus 206 ~~~~~l~~~Lr~~pd~ii~gE~r~ 229 (308)
T TIGR02788 206 TPKDLLQSCLRMRPDRIILGELRG 229 (308)
T ss_pred CHHHHHHHHhcCCCCeEEEeccCC
Confidence 344457777778999999999853
No 434
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=75.89 E-value=1.6 Score=43.92 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=20.2
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
+.++.+.+++..|.+|+||.|..+...
T Consensus 159 ~~~I~~~i~~~~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 159 WEQICANIEEENPQACVIDSIQTLYSP 185 (454)
T ss_pred HHHHHHHHHhcCCcEEEEecchhhccc
Confidence 344555666778999999999998643
No 435
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.84 E-value=15 Score=36.64 Aligned_cols=16 Identities=13% Similarity=-0.251 Sum_probs=13.3
Q ss_pred ceeeeeeccCCCCc-hhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l 196 (358)
..-++|.|| +|+ ||.+
T Consensus 221 ~~~i~~vGp--tGvGKTTt 237 (424)
T PRK05703 221 GGVVALVGP--TGVGKTTT 237 (424)
T ss_pred CcEEEEECC--CCCCHHHH
Confidence 346899999 999 9976
No 436
>KOG0964|consensus
Probab=75.65 E-value=1.6 Score=46.86 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=43.0
Q ss_pred HHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchh
Q psy3629 275 TIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346 (358)
Q Consensus 275 ~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a 346 (358)
..||..-|...-..-+|||||+-+.. -....++.|+.+|..-. -+|+||=||++|--|
T Consensus 1109 aLIFaIQrcDPAPFYlfDEIDAaLDa---------QyR~aVa~lIkelS~~a-----QFI~TTFRpEll~vA 1166 (1200)
T KOG0964|consen 1109 ALIFAIQRCDPAPFYLFDEIDAALDA---------QYRTAVADLIKELSDSA-----QFITTTFRPELLSVA 1166 (1200)
T ss_pred HHHHHHHhcCCcchhhHhHHhhhccH---------HHHHHHHHHHHHHhhcc-----ceEeecccHHHHHHH
Confidence 34688766543346778999998755 33567889999998554 489999999998655
No 437
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=75.33 E-value=4.1 Score=39.05 Aligned_cols=45 Identities=29% Similarity=0.349 Sum_probs=34.9
Q ss_pred CCCeEEEEecC-----CCCCcchhhcCCCCCceEEEecCC-CHHHHHHHHHHH
Q psy3629 7 LNNILVIGMTN-----RRDMIDEALLRPGRLELQMEISLP-NEDGRVQILQIH 53 (358)
Q Consensus 7 ~~~V~vI~aTN-----~p~~LD~Al~R~GRfd~~I~v~~P-~~~~R~~il~~~ 53 (358)
....+||+|+| ....|++|+++ ||...++++.| ...+...++...
T Consensus 152 ~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 152 PPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred CCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 45688999999 56678999999 99999999999 555555555443
No 438
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=75.27 E-value=4.8 Score=38.99 Aligned_cols=61 Identities=10% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHhhcCCCCCceEEEEccchhhhhhcCCCCCCcch-hhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 276 IILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGV-HDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 276 ~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
++........+.+|++|=|-+++.. ...+..... -...+++++..|..+-...++.||.|.
T Consensus 209 ~~~~~~~~~~~~LIVIDSI~alfr~-~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 209 EAASMMAETRFALMIVDSATALYRT-EFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHhhccCCCEEEEeCcHHHHHH-HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 3333445678899999999998643 111111111 123577888777776554566666654
No 439
>PRK04296 thymidine kinase; Provisional
Probab=75.25 E-value=1.6 Score=38.33 Aligned_cols=13 Identities=0% Similarity=-0.176 Sum_probs=11.4
Q ss_pred eeeeccCCCCc-hhhh
Q psy3629 182 VLLEVDKVPTD-ELSL 196 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l 196 (358)
.+++|| ||+ ||.+
T Consensus 5 ~litG~--~GsGKTT~ 18 (190)
T PRK04296 5 EFIYGA--MNSGKSTE 18 (190)
T ss_pred EEEECC--CCCHHHHH
Confidence 578999 999 9976
No 440
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=75.10 E-value=26 Score=32.34 Aligned_cols=56 Identities=23% Similarity=0.352 Sum_probs=44.9
Q ss_pred CccCCC-CeEEEEecCCCCCcchhhc--------------------CCCCCceEEEecCCCHHHHHHHHHHHHhccc
Q psy3629 3 GVERLN-NILVIGMTNRRDMIDEALL--------------------RPGRLELQMEISLPNEDGRVQILQIHTAKMR 58 (358)
Q Consensus 3 g~~~~~-~V~vI~aTN~p~~LD~Al~--------------------R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~ 58 (358)
|++... ||++-+|+||...|++-+. =+.||...+.|+.|+.++=..|+.++.+...
T Consensus 167 ~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~ 243 (287)
T COG2607 167 GVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFG 243 (287)
T ss_pred CcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcC
Confidence 444444 7999999999988874332 2449999999999999999999999998763
No 441
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=74.55 E-value=12 Score=36.82 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=78.8
Q ss_pred ceeeeeeccCCCCc-hhh-hhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELS-LSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
.+-+.|.|| .|. ||. +-.+|+... +. .......++..+ .. -+|.-+..+.||+..++-.
T Consensus 203 ~~vi~LVGP--TGVGKTTTlAKLAar~~---~~---------~~~~kVaiITtD---tY--RIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 203 KRVIALVGP--TGVGKTTTLAKLAARYV---ML---------KKKKKVAIITTD---TY--RIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred CcEEEEECC--CCCcHHHHHHHHHHHHH---hh---------ccCcceEEEEec---cc--hhhHHHHHHHHHHHhCCce
Confidence 555899999 998 764 422343331 00 111222223322 21 3688888889999988876
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
-.+.+. +-..+-....+.. .+||+|= .+.++.....+.+|=..++....-...+|+.|
T Consensus 264 ~vv~~~---------~el~~ai~~l~~~--d~ILVDT-----------aGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa 321 (407)
T COG1419 264 EVVYSP---------KELAEAIEALRDC--DVILVDT-----------AGRSQYDKEKIEELKELIDVSHSIEVYLVLSA 321 (407)
T ss_pred EEecCH---------HHHHHHHHHhhcC--CEEEEeC-----------CCCCccCHHHHHHHHHHHhccccceEEEEEec
Confidence 444433 1111112222222 6888771 12233456677777777777655567888999
Q ss_pred cCCccccchhcCCCCCCcc
Q psy3629 337 TNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 337 Tn~~~~iD~a~lr~GRfd~ 355 (358)
|..-..+...+-+=+.|..
T Consensus 322 t~K~~dlkei~~~f~~~~i 340 (407)
T COG1419 322 TTKYEDLKEIIKQFSLFPI 340 (407)
T ss_pred CcchHHHHHHHHHhccCCc
Confidence 9888888888776556654
No 442
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=74.47 E-value=7 Score=39.91 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=36.0
Q ss_pred hHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 271 EFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 271 e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
+.....+-+......|..|+||-+..+... .... ....+.+..|+..+.. .++.+|.++....
T Consensus 116 ~~l~~~l~~~i~~~~~~~vVIDSls~l~~~---~d~~-~~~r~~l~~L~~~Lk~----~g~TvLlt~~~~~ 178 (509)
T PRK09302 116 EALFIRIEYAIDKIGAKRVVLDSIEALFSG---FSNE-AVVRRELRRLFAWLKQ----KGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCHHHHHhh---ccCH-HHHHHHHHHHHHHHHh----CCCEEEEEECCcc
Confidence 445555666666778899999999987543 1111 1123445555555532 2455666665543
No 443
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=74.43 E-value=11 Score=40.39 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=65.0
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDID 258 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 258 (358)
.-++|.|| .|+ ||.. +..+...+ ....+..-+.+...|.. -+|-.+..+.+++..++....
T Consensus 186 ~Vi~lVGp--nGvGKTTT---iaKLA~~~-----------~~~~G~kkV~lit~Dt~--RigA~eQL~~~a~~~gvpv~~ 247 (767)
T PRK14723 186 GVLALVGP--TGVGKTTT---TAKLAARC-----------VAREGADQLALLTTDSF--RIGALEQLRIYGRILGVPVHA 247 (767)
T ss_pred eEEEEECC--CCCcHHHH---HHHHHhhH-----------HHHcCCCeEEEecCccc--chHHHHHHHHHHHhCCCCccc
Confidence 45889999 999 9877 44442111 11111111222222321 245566667777776654321
Q ss_pred ccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC-CCCCCCCEEEEEec
Q psy3629 259 VKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD-GVERLNNILVIGMT 337 (358)
Q Consensus 259 ~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld-~~~~~~~v~vi~aT 337 (358)
+. ..+.+....+.++.. .+|||| .. | .+..... +...+..+. .......++|+-+|
T Consensus 248 ~~---------~~~~l~~al~~~~~~--D~VLID---------TA-G-Rs~~d~~-l~eel~~l~~~~~p~e~~LVLsAt 304 (767)
T PRK14723 248 VK---------DAADLRFALAALGDK--HLVLID---------TV-G-MSQRDRN-VSEQIAMLCGVGRPVRRLLLLNAA 304 (767)
T ss_pred cC---------CHHHHHHHHHHhcCC--CEEEEe---------CC-C-CCccCHH-HHHHHHHHhccCCCCeEEEEECCC
Confidence 11 233355556655544 588888 11 1 1112223 444444443 34444567888888
Q ss_pred CCccccchhc
Q psy3629 338 NRRDMIDEAL 347 (358)
Q Consensus 338 n~~~~iD~a~ 347 (358)
...+.+...+
T Consensus 305 ~~~~~l~~i~ 314 (767)
T PRK14723 305 SHGDTLNEVV 314 (767)
T ss_pred CcHHHHHHHH
Confidence 8877776443
No 444
>PF14516 AAA_35: AAA-like domain
Probab=74.33 E-value=4.8 Score=38.69 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred hhHHHHHHhhc---CCCCCceEEEEccchhhhhh
Q psy3629 270 SEFLCTIILEA---GPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 270 ~e~~~~~~f~~---a~~~~p~iif~DeiD~~~~~ 300 (358)
+...+..-|+. .....|-||||||+|.++..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~ 142 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEY 142 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccC
Confidence 33444444543 33478999999999999865
No 445
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=74.17 E-value=2.2 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.8
Q ss_pred hhcCCCCCceEEEEccch
Q psy3629 278 LEAGPNSGLHIIIFDEID 295 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD 295 (358)
.+.|-...|.+|++||+-
T Consensus 188 l~~~lr~~pd~i~vgEir 205 (343)
T TIGR01420 188 LRAALREDPDVILIGEMR 205 (343)
T ss_pred HHHhhccCCCEEEEeCCC
Confidence 556666899999999993
No 446
>KOG2228|consensus
Probab=74.10 E-value=12 Score=36.06 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=30.1
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
..|.|-++||+|..++. .-..++-.|+.--+ ..+..+-|||-|.|-|.++-
T Consensus 136 ~~~ViFIldEfDlf~~h---------~rQtllYnlfDisq--s~r~Piciig~Ttrld~lE~ 186 (408)
T KOG2228|consen 136 SGKVIFILDEFDLFAPH---------SRQTLLYNLFDISQ--SARAPICIIGVTTRLDILEL 186 (408)
T ss_pred CceEEEEeehhhccccc---------hhhHHHHHHHHHHh--hcCCCeEEEEeeccccHHHH
Confidence 33445556799999876 11233333332222 22346899999988887763
No 447
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.89 E-value=17 Score=37.96 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.++.+.+.+.. |. ..++|..++..+-..+++......+ ...++..+..|++.+.| +..++.+.
T Consensus 149 ~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~eg---l~i~~eal~~La~~s~G-dlr~al~~ 221 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEG---INLEPGALEAIARAATG-SMRDAENL 221 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 457777778888888888877 76 5788999999988888887776542 22345567788888776 66666666
Q ss_pred HHH
Q psy3629 88 VRA 90 (358)
Q Consensus 88 ~~~ 90 (358)
++.
T Consensus 222 Lek 224 (585)
T PRK14950 222 LQQ 224 (585)
T ss_pred HHH
Confidence 654
No 448
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=73.53 E-value=6.3 Score=37.57 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=35.2
Q ss_pred HHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcch-hhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 274 CTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGV-HDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 274 ~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
+..+...... ..+.+|+||=|-+++..- ..+..... -.+.+++++..|..+-...+|.||.|+.
T Consensus 186 ~~~l~~~i~~~~~~~lvVIDSisa~~~~~-~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 186 AEKAEELIKEGENIKLVIVDSLTAHFRAE-YVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred HHHHHHHHhccCceeEEEEECchHHhhhh-ccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 3334444444 577899999998876431 11111101 1344667777666654445677777654
No 449
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=73.51 E-value=4.9 Score=40.33 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=27.7
Q ss_pred ccCCCCeEEEEecCCCC----CcchhhcCCCCCceEEEecC
Q psy3629 4 VERLNNILVIGMTNRRD----MIDEALLRPGRLELQMEISL 40 (358)
Q Consensus 4 ~~~~~~V~vI~aTN~p~----~LD~Al~R~GRfd~~I~v~~ 40 (358)
|.--.++.+|||+|..+ .+|.|++| || ..|++.+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 34446899999999998 89999999 99 5567654
No 450
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.49 E-value=18 Score=34.59 Aligned_cols=133 Identities=11% Similarity=0.068 Sum_probs=62.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
++.-+++.|| +|+ ||.+ +..+...+ ... +.. +.+.+.|.. -.|..+....|++..++..
T Consensus 113 ~~~vi~lvGp--nGsGKTTt---~~kLA~~l-----------~~~-g~~-V~Li~~D~~--r~~a~eql~~~a~~~~i~~ 172 (318)
T PRK10416 113 KPFVILVVGV--NGVGKTTT---IGKLAHKY-----------KAQ-GKK-VLLAAGDTF--RAAAIEQLQVWGERVGVPV 172 (318)
T ss_pred CCeEEEEECC--CCCcHHHH---HHHHHHHH-----------Hhc-CCe-EEEEecCcc--chhhHHHHHHHHHHcCceE
Confidence 3456888999 999 9987 55542221 211 111 122222321 1122233344555555443
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHH---HHHccC---CCCCCCC
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQ---LLSKMD---GVERLNN 330 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~---lL~~ld---~~~~~~~ 330 (358)
+ ......++-..+......+....-.+|++|=. .|. + ..+..+.+ +..-++ .......
T Consensus 173 ~-----~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTa-----Gr~----~--~~~~l~~eL~~~~~v~~~~~~~~p~~~ 236 (318)
T PRK10416 173 I-----AQKEGADPASVAFDAIQAAKARGIDVLIIDTA-----GRL----H--NKTNLMEELKKIKRVIKKADPDAPHEV 236 (318)
T ss_pred E-----EeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC-----CCC----c--CCHHHHHHHHHHHHHHhhhcCCCCceE
Confidence 1 11122233333334344555566678998821 111 1 12222222 222221 2233346
Q ss_pred EEEEEecCCccccchh
Q psy3629 331 ILVIGMTNRRDMIDEA 346 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a 346 (358)
++|+-+|...+.+..|
T Consensus 237 ~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 237 LLVLDATTGQNALSQA 252 (318)
T ss_pred EEEEECCCChHHHHHH
Confidence 8889888777776655
No 451
>PF13479 AAA_24: AAA domain
Probab=72.64 E-value=2.9 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...+++||| ||+ ||.+ +..+.
T Consensus 3 ~~~~lIyG~--~G~GKTt~---a~~~~ 24 (213)
T PF13479_consen 3 PIKILIYGP--PGSGKTTL---AASLP 24 (213)
T ss_pred ceEEEEECC--CCCCHHHH---HHhCC
Confidence 345899999 999 9999 76663
No 452
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=72.60 E-value=28 Score=36.70 Aligned_cols=45 Identities=24% Similarity=0.468 Sum_probs=36.1
Q ss_pred CCeEEEEecCCC-CCcchhhcCCCCCceEEEecCCC-HHHHHHHHHHHH
Q psy3629 8 NNILVIGMTNRR-DMIDEALLRPGRLELQMEISLPN-EDGRVQILQIHT 54 (358)
Q Consensus 8 ~~V~vI~aTN~p-~~LD~Al~R~GRfd~~I~v~~P~-~~~R~~il~~~l 54 (358)
.++.+|+++|.- ..+.++++. ||+.+|.++.|. .++|.++++..+
T Consensus 168 ~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 168 ARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred CCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 368999999853 468899999 999999998774 688888887644
No 453
>PRK08118 topology modulation protein; Reviewed
Probab=72.52 E-value=1.7 Score=37.35 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=17.0
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..+++.|| ||+ ||.+ |+.+
T Consensus 2 ~rI~I~G~--~GsGKSTl---ak~L 21 (167)
T PRK08118 2 KKIILIGS--GGSGKSTL---ARQL 21 (167)
T ss_pred cEEEEECC--CCCCHHHH---HHHH
Confidence 35899999 999 9999 9988
No 454
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=72.37 E-value=1.7 Score=37.56 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=13.3
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
++++|+ ||+ ||.+ .+.+.
T Consensus 2 i~iTG~--pG~GKTTl---l~k~i 20 (168)
T PF03266_consen 2 IFITGP--PGVGKTTL---LKKVI 20 (168)
T ss_dssp EEEES---TTSSHHHH---HHHHH
T ss_pred EEEECc--CCCCHHHH---HHHHH
Confidence 789999 999 9988 55443
No 455
>PRK13695 putative NTPase; Provisional
Probab=72.22 E-value=3.8 Score=35.19 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=11.8
Q ss_pred eeeeccCCCCc-hhhh
Q psy3629 182 VLLEVDKVPTD-ELSL 196 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l 196 (358)
+.+.|+ ||+ ||.+
T Consensus 3 i~ltG~--~G~GKTTl 16 (174)
T PRK13695 3 IGITGP--PGVGKTTL 16 (174)
T ss_pred EEEECC--CCCCHHHH
Confidence 688999 999 9987
No 456
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=72.21 E-value=15 Score=35.33 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=39.0
Q ss_pred CCCCeEEEEecCCCC------------CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHH
Q psy3629 6 RLNNILVIGMTNRRD------------MIDEALLRPGRLELQMEISLPNEDGRVQILQIHT 54 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~------------~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l 54 (358)
...+..||||+|..+ .|++|++- ||-.++.++.|+.++=.+|+....
T Consensus 175 ~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 175 AHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 445788999999865 46899998 998889999999998888887654
No 457
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=72.04 E-value=4.8 Score=37.66 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=33.2
Q ss_pred hHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 271 EFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 271 e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
+..+....+.+++ ....+|+||-. ... ......+.+|...+........++|+-+|.....+
T Consensus 139 ~~~l~~~l~~l~~~~~~D~ViIDt~---------Gr~--~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 139 EAAMTRALTYFKEEARVDYILIDTA---------GKN--YRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECC---------CCC--cCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 3444554554433 34678998832 111 12244566666666655554446677676665443
No 458
>PRK13947 shikimate kinase; Provisional
Probab=71.87 E-value=1.7 Score=36.99 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=16.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..+++.|+ ||+ ||.+ ++.+
T Consensus 2 ~~I~l~G~--~GsGKst~---a~~L 21 (171)
T PRK13947 2 KNIVLIGF--MGTGKTTV---GKRV 21 (171)
T ss_pred CeEEEEcC--CCCCHHHH---HHHH
Confidence 35899999 999 9999 8888
No 459
>PRK00131 aroK shikimate kinase; Reviewed
Probab=71.84 E-value=1.8 Score=36.70 Aligned_cols=20 Identities=5% Similarity=-0.190 Sum_probs=17.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+..+++.|+ ||+ ||.+ |+.+
T Consensus 4 ~~~i~l~G~--~GsGKstl---a~~L 24 (175)
T PRK00131 4 GPNIVLIGF--MGAGKSTI---GRLL 24 (175)
T ss_pred CCeEEEEcC--CCCCHHHH---HHHH
Confidence 456899999 999 9999 8888
No 460
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=71.44 E-value=17 Score=33.69 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=54.7
Q ss_pred hhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy3629 25 ALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMN 97 (358)
Q Consensus 25 Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~ 97 (358)
.+-+ |++..|++++-+.++-...+++.++.-.....+.++..+..+...+.| .+.-|.++|..|...+..
T Consensus 186 e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 186 ELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 3445 788778888889998888999988876656667777888899999999 567788888887766554
No 461
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=71.42 E-value=1.7 Score=40.31 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=38.0
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
+....+|++|-|-+++..--...+....-.+.+.+++..|..+-...++.||.|..-...+|.
T Consensus 131 ~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~ 193 (256)
T PF08423_consen 131 ESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDS 193 (256)
T ss_dssp HSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT-
T ss_pred ccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCc
Confidence 456789999999999864211111111224677788777777765567777776554445554
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.32 E-value=21 Score=37.47 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.+..|-++++. |. ..++|..++.++-...++..+...+ ...++..++.|++.+.| +.+++.+.
T Consensus 150 ~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~eg---i~i~~~al~~La~~s~g-dlr~al~~ 222 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEG---ITAEPEALNVIAQKADG-GMRDALSI 222 (614)
T ss_pred CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 456777777778889899887 76 6699999999988888887776642 22344567888888865 66666665
Q ss_pred HHHH
Q psy3629 88 VRAA 91 (358)
Q Consensus 88 ~~~A 91 (358)
+...
T Consensus 223 Lekl 226 (614)
T PRK14971 223 FDQV 226 (614)
T ss_pred HHHH
Confidence 5543
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=71.26 E-value=2.8 Score=40.66 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=19.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
....+++.|| +|+ ||.+ .+++...+
T Consensus 161 ~~~nilI~G~--tGSGKTTl---l~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGP--TGSGKTTM---SKTLISAI 186 (344)
T ss_pred cCCeEEEECC--CCccHHHH---HHHHHccc
Confidence 4567999999 999 9998 77775443
No 464
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=71.24 E-value=7.3 Score=34.90 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=32.8
Q ss_pred CCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcC
Q psy3629 281 GPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALL 348 (358)
Q Consensus 281 a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~l 348 (358)
+....|++++|||+-+=... . ....++..++..+-.. +.....+|.+|-.++.+....+
T Consensus 104 ~~~~~~slvllDE~~~gtd~------~--~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~~ 162 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDT------E--DGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSLL 162 (213)
T ss_pred HhCCCCcEEEeccccCCCCH------H--HHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhhh
Confidence 33467899999998652211 0 1123333444444211 1123578888988888776653
No 465
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=70.13 E-value=30 Score=33.77 Aligned_cols=99 Identities=23% Similarity=0.152 Sum_probs=63.3
Q ss_pred eEEEEecCC------------CCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcC
Q psy3629 10 ILVIGMTNR------------RDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTK 77 (358)
Q Consensus 10 V~vI~aTN~------------p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~ 77 (358)
=++|.|||+ |.-|+..++- |+ ..|...+=+.++-.+|++.-.+... ...++..++.|++.-.
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~---i~l~~~Ale~L~~ig~ 394 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEED---IELSDDALEYLTDIGE 394 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhc---cccCHHHHHHHHhhch
Confidence 356677774 6778888876 65 4455444477888899987765532 3446677888887766
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 78 NFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 78 g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
--|-.---+++..|...|-++ +...+..+|..+|-+.
T Consensus 395 etSLRYa~qLL~pa~iiA~~r---------------g~~~V~~~dVe~a~~l 431 (450)
T COG1224 395 ETSLRYAVQLLTPASIIAKRR---------------GSKRVEVEDVERAKEL 431 (450)
T ss_pred hhhHHHHHHhccHHHHHHHHh---------------CCCeeehhHHHHHHHH
Confidence 555555555555555444443 3345777777777654
No 466
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=70.06 E-value=2.2 Score=39.51 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=13.4
Q ss_pred hhcCCCCCceEEEEccchh
Q psy3629 278 LEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~ 296 (358)
++.+-...|.+|+++||-.
T Consensus 190 l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 190 LKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp HHHHTTS--SEEEESCE-S
T ss_pred HHHHhcCCCCcccccccCC
Confidence 6667778999999999865
No 467
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=69.98 E-value=12 Score=34.38 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=31.1
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCC
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGV 325 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~ 325 (358)
+.+.....+-+.++...+.++.||-+-.+.-.-. .. ....+.+.++...+...
T Consensus 108 ~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~---~~-~~~r~~~~~l~~~~~~~ 160 (260)
T COG0467 108 DLEELLDRIREIVEKEGADRVVIDSITELTLYLN---DP-ALVRRILLLLKRFLKKL 160 (260)
T ss_pred cHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcC---ch-HHHHHHHHHHHHHHHhC
Confidence 4566667777777777788999998886543311 11 12245555555555533
No 468
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=69.94 E-value=18 Score=35.29 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
.++++|.+|+.++.+.+.++. |. ..+.|+.|+.++-.+++...... ..+..+..++..+.|-.
T Consensus 170 ~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~-------~~~~~~~~l~~~s~Gsp 232 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD-------LPDDPRAALAALAEGSV 232 (365)
T ss_pred CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc-------CCHHHHHHHHHHcCCCH
Confidence 467888899999999998877 76 78999999999998888765422 12223356777776643
No 469
>PRK05973 replicative DNA helicase; Provisional
Probab=69.79 E-value=8 Score=35.43 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=16.2
Q ss_pred eeeeeeccCCCCc-hhhh-hhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSL-SNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l-~~~a~~~ 203 (358)
.-+++.|+ ||+ ||.+ .+|+...
T Consensus 65 sl~LIaG~--PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 65 DLVLLGAR--PGHGKTLLGLELAVEA 88 (237)
T ss_pred CEEEEEeC--CCCCHHHHHHHHHHHH
Confidence 44899999 999 9988 3444444
No 470
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=69.59 E-value=1.3 Score=35.35 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=15.8
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+++.|| ||+ ||.+ |+.+.
T Consensus 2 I~I~G~--~gsGKST~---a~~La 20 (121)
T PF13207_consen 2 IIISGP--PGSGKSTL---AKELA 20 (121)
T ss_dssp EEEEES--TTSSHHHH---HHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHH
Confidence 688999 999 9999 88883
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=69.47 E-value=3.3 Score=36.17 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCCCCceEEEEccch
Q psy3629 272 FLCTIILEAGPNSGLHIIIFDEID 295 (358)
Q Consensus 272 ~~~~~~f~~a~~~~p~iif~DeiD 295 (358)
.....+.+.+....|.+|+++|+-
T Consensus 87 ~~~~~~l~~~lR~~pd~i~igEir 110 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVR 110 (186)
T ss_pred cCHHHHHHHHhccCCCEEEEEccC
Confidence 334444666777889999999985
No 472
>PRK10263 DNA translocase FtsK; Provisional
Probab=69.34 E-value=12 Score=42.31 Aligned_cols=46 Identities=17% Similarity=0.315 Sum_probs=30.1
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
.-||+|||+..|...- .+. +..+|..|-.....-+|.+|.||.||+
T Consensus 1141 ~IVVIIDE~AdLm~~~---------~ke-vE~lI~rLAqkGRAaGIHLILATQRPs 1186 (1355)
T PRK10263 1141 YIVVLVDEFADLMMTV---------GKK-VEELIARLAQKARAAGIHLVLATQRPS 1186 (1355)
T ss_pred eEEEEEcChHHHHhhh---------hHH-HHHHHHHHHHHhhhcCeEEEEEecCcc
Confidence 3689999998887541 112 233444444333445799999999997
No 473
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.19 E-value=24 Score=37.05 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=51.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|++|+.+..|-+.++. |. ..++|..|+.++-...++....+.. ...+...+..+++.+.| +..++.++
T Consensus 150 ~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~keg---i~is~~al~~La~~s~G-~lr~A~~l 222 (620)
T PRK14948 150 PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKES---IEIEPEALTLVAQRSQG-GLRDAESL 222 (620)
T ss_pred cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 468888888899999999887 76 6788888888777666666555431 12234557788888776 33444444
Q ss_pred HH
Q psy3629 88 VR 89 (358)
Q Consensus 88 ~~ 89 (358)
++
T Consensus 223 Le 224 (620)
T PRK14948 223 LD 224 (620)
T ss_pred HH
Confidence 44
No 474
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=69.11 E-value=2.8 Score=40.80 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=31.3
Q ss_pred hHHHHHHHHccCCC--C--CC-----CCEEEEEecCCcc-------ccchhcCCCCCCcccc
Q psy3629 312 DTVVNQLLSKMDGV--E--RL-----NNILVIGMTNRRD-------MIDEALLRPGRLEVSE 357 (358)
Q Consensus 312 ~~~~~~lL~~ld~~--~--~~-----~~v~vi~aTn~~~-------~iD~a~lr~GRfd~~~ 357 (358)
..+++.||+.++.- . +. -+.+||++||..+ ..-+|+++ |+.+..
T Consensus 250 ~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~~i~ 309 (361)
T smart00763 250 IKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RIIKVK 309 (361)
T ss_pred HHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceEEEe
Confidence 35788899888831 1 11 1368999999884 66889999 988654
No 475
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=69.10 E-value=24 Score=31.88 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=20.7
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
.+..+..+.+.++...|.+|+||.+-.+
T Consensus 96 ~~~~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 96 VVPEFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred ccHHHHHHHHHHHhcCCCEEEECChHHh
Confidence 3445566666666678999999988877
No 476
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=69.01 E-value=8.3 Score=38.18 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.6
Q ss_pred CCCceEEEEccchhhhhh
Q psy3629 283 NSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~ 300 (358)
.....|||+||+..++..
T Consensus 253 ~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 253 HKKDVVILLDSITRLARA 270 (415)
T ss_pred cCCCeEEEEEChhHHHHH
Confidence 356689999999998754
No 477
>KOG1970|consensus
Probab=68.93 E-value=17 Score=37.24 Aligned_cols=20 Identities=10% Similarity=-0.130 Sum_probs=16.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+=+|++|| +|| ||.. .+.+
T Consensus 110 ~~iLLltGP--sGcGKSTt---vkvL 130 (634)
T KOG1970|consen 110 SRILLLTGP--SGCGKSTT---VKVL 130 (634)
T ss_pred ceEEEEeCC--CCCCchhH---HHHH
Confidence 344789999 999 9887 7777
No 478
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=68.63 E-value=3.3 Score=39.92 Aligned_cols=25 Identities=4% Similarity=0.161 Sum_probs=19.6
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
....+++.|+ +|+ ||.+ .+++...+
T Consensus 159 ~~~nili~G~--tgSGKTTl---l~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGG--TSTGKTTF---TNAALREI 184 (332)
T ss_pred cCCcEEEECC--CCCCHHHH---HHHHHhhC
Confidence 4677999999 999 9988 77664443
No 479
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=68.32 E-value=31 Score=29.71 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=26.7
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
.+.+|++|-+-.+....-.... .......+..|+..+..... .++++.
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~-~~~~~~~l~~li~~L~~~~~--tvVlVs 123 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEG-EEAIAAEIDALLAALQQLPA--KIILVT 123 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccc-hHHHHHHHHHHHHHHHcCCC--CEEEEE
Confidence 4568999999999875432111 01223445567777665332 454444
No 480
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=67.39 E-value=6 Score=37.49 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=28.9
Q ss_pred CceEEEEccchhhhhhcCCCCCCcch-hhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGV-HDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~-~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
.+.+|++|=|-++...- ..+..... -.+.+++++..|-.+-...++.||.|.
T Consensus 192 ~~~lVVIDSisa~~r~e-~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 192 PVKLLIVDSLTSHFRAE-YVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CceEEEEecchHhhhHh-hcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 47799999888875431 11111111 124566666666666444566666654
No 481
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=67.25 E-value=4.7 Score=36.74 Aligned_cols=36 Identities=3% Similarity=-0.145 Sum_probs=25.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..+..+.|| .|| ||.. .+.+ +...+...+..++.+.
T Consensus 32 ~~~~~~~Gp--agtGKtet---ik~L---------------a~~lG~~~~vfnc~~~ 68 (231)
T PF12774_consen 32 NLGGALSGP--AGTGKTET---IKDL---------------ARALGRFVVVFNCSEQ 68 (231)
T ss_dssp TTEEEEESS--TTSSHHHH---HHHH---------------HHCTT--EEEEETTSS
T ss_pred CCCCCCcCC--CCCCchhH---HHHH---------------HHHhCCeEEEeccccc
Confidence 345578999 999 9999 7777 6667777777776665
No 482
>PHA00350 putative assembly protein
Probab=66.88 E-value=16 Score=36.18 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=34.6
Q ss_pred eEEEEccchhhhhhcCCCCCC------cc--------hhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 287 HIIIFDEIDAICKARGTAGGN------TG--------VHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~------~~--------~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
++|+|||+-.+++.|...... .+ .....+ +.+.+.- ..+.=|+.+|-+|..||..+..
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i-~~l~~HR----H~G~DIiliTQ~~~~Id~~iR~ 154 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFL-EAFMRHR----HYNWDIILLTPNIRKIHSDIRA 154 (399)
T ss_pred CEEEEECchhhcCCCccccccccccccccccccccccCCHHHH-HHHHHhc----ccCceEEEEeCCHHHhhHHHHH
Confidence 699999999999998541000 00 012223 2333222 1234478889999999987753
No 483
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=66.75 E-value=16 Score=31.80 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=15.4
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.+++.|. ||+ |+++ ...+
T Consensus 2 ~i~lvG~--~g~GKSsl---~N~i 20 (196)
T cd01852 2 RLVLVGK--TGAGKSAT---GNTI 20 (196)
T ss_pred EEEEECC--CCCCHHHH---HHHh
Confidence 4789999 999 9998 7766
No 484
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=66.54 E-value=3 Score=41.82 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=21.7
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
..+..++|++|| ||| ||++ |+.+..-+
T Consensus 195 AAGgHnLl~~Gp--PGtGKTml---a~Rl~~lL 222 (490)
T COG0606 195 AAGGHNLLLVGP--PGTGKTML---ASRLPGLL 222 (490)
T ss_pred HhcCCcEEEecC--CCCchHHh---hhhhcccC
Confidence 356788999999 999 9999 88774433
No 485
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=66.06 E-value=14 Score=36.54 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=30.6
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
..+.||||||..+=+ + .+.+..|....- . +|++.+++...-.-..+=.=+||...
T Consensus 94 ~~~yifLDEIq~v~~----------W-~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~~~ 148 (398)
T COG1373 94 EKSYIFLDEIQNVPD----------W-ERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRGKD 148 (398)
T ss_pred CCceEEEecccCchh----------H-HHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCcee
Confidence 568999999988511 1 233433332211 1 46666666555555555555677543
No 486
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.04 E-value=31 Score=36.25 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=53.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
+.+++|.+|+.+..|-+.+.. |- ..++|..++.++-...++..+...+ ...++..++.++..+.| +.+++.+.
T Consensus 156 ~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~eg---i~I~~eal~~La~~s~G-dlr~al~e 228 (620)
T PRK14954 156 PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEG---IQIDADALQLIARKAQG-SMRDAQSI 228 (620)
T ss_pred CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhCC-CHHHHHHH
Confidence 456777777888999888887 66 7899999999888877777665432 22456677888888876 44444444
Q ss_pred HH
Q psy3629 88 VR 89 (358)
Q Consensus 88 ~~ 89 (358)
++
T Consensus 229 Le 230 (620)
T PRK14954 229 LD 230 (620)
T ss_pred HH
Confidence 44
No 487
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=65.89 E-value=33 Score=35.18 Aligned_cols=80 Identities=15% Similarity=0.097 Sum_probs=60.1
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.+|++|.||.-|..+++-++. |- .++.|..-+.++....|+..+.+.. -..++..+..+|+..+| |.+|...+
T Consensus 148 ~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~---I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG---INIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred cCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC---CccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 469999999999999998886 54 4556667778888888888887642 33456678888988888 67777777
Q ss_pred HHHHHHH
Q psy3629 88 VRAAQSC 94 (358)
Q Consensus 88 ~~~A~~~ 94 (358)
..+|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7776543
No 488
>PTZ00035 Rad51 protein; Provisional
Probab=65.68 E-value=14 Score=35.69 Aligned_cols=67 Identities=12% Similarity=0.187 Sum_probs=36.6
Q ss_pred chhHHHHHH---hhcCCCCCceEEEEccchhhhhhcCCCCCCcc-hhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 269 TSEFLCTII---LEAGPNSGLHIIIFDEIDAICKARGTAGGNTG-VHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 269 ~~e~~~~~~---f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
++|..+..+ .....+..+.+|+||=|-+++.. ...+.... ...+.+++++..|..+-...+|.||.|
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~-~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRV-DYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhh-hccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 445443333 33334567899999999988643 11111111 113456777777766644446666654
No 489
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=65.61 E-value=6.4 Score=45.09 Aligned_cols=17 Identities=24% Similarity=0.116 Sum_probs=15.1
Q ss_pred cceeeeeeccCCCCc-hhhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l 196 (358)
..+++++.|| ||. |+++
T Consensus 1493 t~R~~i~cGp--pGSgK~ml 1510 (3164)
T COG5245 1493 TLRSYIYCGP--PGSGKEML 1510 (3164)
T ss_pred ccceEEEECC--CCCccchh
Confidence 4689999999 999 9986
No 490
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=65.57 E-value=6.8 Score=37.47 Aligned_cols=62 Identities=11% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchh--hHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVH--DTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~--~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
+.++-.......+.+|+||=|-+++.. ...+.. ... ...+++++..|..+-...++.||.|.
T Consensus 180 l~~~~~~~~~~~~~LvVIDSI~al~r~-~~~~~~-~~~~rq~~l~~~~~~L~~la~~~~vavv~tN 243 (316)
T TIGR02239 180 LQQAAAMMSESRFALLIVDSATALYRT-DFSGRG-ELSARQMHLARFLRSLQRLADEFGVAVVITN 243 (316)
T ss_pred HHHHHHhhccCCccEEEEECcHHHhhh-hcCCcc-hHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 444444455678899999999988643 111111 122 23456777777766444466666653
No 491
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=65.20 E-value=11 Score=37.07 Aligned_cols=22 Identities=9% Similarity=-0.171 Sum_probs=16.8
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
++..-+++.|| .|+ ||.+ +..+
T Consensus 204 ~~~~ii~lvGp--tGvGKTTt---~akL 226 (407)
T PRK12726 204 SNHRIISLIGQ--TGVGKTTT---LVKL 226 (407)
T ss_pred cCCeEEEEECC--CCCCHHHH---HHHH
Confidence 44566899999 999 9987 5554
No 492
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=65.14 E-value=2.6 Score=34.99 Aligned_cols=17 Identities=6% Similarity=-0.095 Sum_probs=15.6
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|+ ||+ ||.+ |+.+
T Consensus 2 i~l~G~--~GsGKstl---a~~l 19 (154)
T cd00464 2 IVLIGM--MGAGKTTV---GRLL 19 (154)
T ss_pred EEEEcC--CCCCHHHH---HHHH
Confidence 789999 999 9999 8888
No 493
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.91 E-value=14 Score=36.40 Aligned_cols=78 Identities=13% Similarity=0.028 Sum_probs=55.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
..+++|.+|+.+..|-+++.+ |. ..++|..++.++-...++..++... ...++..++.++..+.| +...+.+.
T Consensus 156 ~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g-~lr~a~~~ 228 (397)
T PRK14955 156 PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQG-SMRDAQSI 228 (397)
T ss_pred CCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 456677777788888888887 76 4788998988888888887776532 22456677888888876 55566565
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++.+.
T Consensus 229 L~kl~ 233 (397)
T PRK14955 229 LDQVI 233 (397)
T ss_pred HHHHH
Confidence 55443
No 494
>PRK13764 ATPase; Provisional
Probab=64.88 E-value=5.9 Score=41.33 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDF 207 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~ 207 (358)
..++|+.|| ||+ ||.+ ++++...+
T Consensus 257 ~~~ILIsG~--TGSGKTTl---l~AL~~~i 281 (602)
T PRK13764 257 AEGILIAGA--PGAGKSTF---AQALAEFY 281 (602)
T ss_pred CCEEEEECC--CCCCHHHH---HHHHHHHH
Confidence 467999999 999 9988 77775544
No 495
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=63.74 E-value=8.1 Score=34.36 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=28.4
Q ss_pred HhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
+|...+.....+++|||+|+=+.. ...+-+..+|.++..- .+ +|.+|-++.....
T Consensus 150 ~lA~~~~~~~p~~ilDEvd~~LD~---------~~~~~l~~~l~~~~~~---~Q--~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 150 LLALQRYKPSPFLILDEVDAALDE---------QNRKRLADLLKELSKQ---SQ--FIITTHNPEMFED 204 (220)
T ss_dssp HHHHHTCS--SEEEEESTTTTS-H---------HHHHHHHHHHHHHTTT---SE--EEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccc---------cccccccccccccccc---cc--ccccccccccccc
Confidence 455555444569999999996543 2234455666665422 23 3344555555443
No 496
>KOG2004|consensus
Probab=63.49 E-value=10 Score=40.04 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhc
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAK 56 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~ 56 (358)
-.+|++|+|.|..+.|+++++- |+ ..|+++==..++...|-+.||-.
T Consensus 552 LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 552 LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhh
Confidence 3579999999999999999998 88 67777666778899998888743
No 497
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=63.45 E-value=2.6 Score=34.56 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=15.4
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|| ||+ ||.+ |+.+
T Consensus 2 ii~~G~--pgsGKSt~---a~~l 19 (143)
T PF13671_consen 2 IILCGP--PGSGKSTL---AKRL 19 (143)
T ss_dssp EEEEES--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 588999 999 9999 8887
No 498
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=63.13 E-value=42 Score=31.79 Aligned_cols=64 Identities=8% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
..++++|.+|+.|+.|-|.++. |- ..++|+.|+.++-...++..... .+....+.++..+.|-.
T Consensus 121 p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 121 PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIP 184 (313)
T ss_pred CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCH
Confidence 3467777788889999999887 66 68999999998887777654322 12344566776666643
No 499
>PRK13949 shikimate kinase; Provisional
Probab=63.09 E-value=3.7 Score=35.39 Aligned_cols=19 Identities=16% Similarity=0.039 Sum_probs=16.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..+++.|+ ||+ ||.+ ++.+
T Consensus 2 ~~I~liG~--~GsGKstl---~~~L 21 (169)
T PRK13949 2 ARIFLVGY--MGAGKTTL---GKAL 21 (169)
T ss_pred cEEEEECC--CCCCHHHH---HHHH
Confidence 45899999 999 9999 8877
No 500
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=62.94 E-value=11 Score=35.35 Aligned_cols=77 Identities=19% Similarity=0.284 Sum_probs=48.7
Q ss_pred chhHHHHHHhhcCCCC--CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 269 TSEFLCTIILEAGPNS--GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~--~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
..|.....+=..++.. ...+|++|=+=++++.-...+...+...|.+++.|..|.++-...++.||.|..--..+|-
T Consensus 123 ~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~ 201 (279)
T COG0468 123 TGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGV 201 (279)
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCc
Confidence 4444433333333333 4789999988888766332233344567899999999998866667777776654444443
Done!