Query psy3629
Match_columns 358
No_of_seqs 246 out of 2215
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:36:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.8E-57 9.6E-62 473.2 14.8 299 1-357 332-643 (806)
2 1ypw_A Transitional endoplasmi 100.0 4E-38 1.4E-42 332.8 7.1 299 1-357 332-643 (806)
3 4b4t_J 26S protease regulatory 100.0 5.1E-35 1.8E-39 283.3 4.2 163 147-357 141-314 (405)
4 4b4t_I 26S protease regulatory 100.0 8.9E-34 3E-38 275.5 3.6 163 147-357 175-348 (437)
5 4b4t_L 26S protease subunit RP 100.0 2.7E-33 9.1E-38 275.0 4.3 163 147-357 174-347 (437)
6 4b4t_K 26S protease regulatory 100.0 2.8E-33 9.5E-38 274.4 3.8 162 148-357 166-338 (428)
7 4b4t_M 26S protease regulatory 100.0 4E-33 1.4E-37 273.5 3.6 162 148-357 175-347 (434)
8 4b4t_H 26S protease regulatory 100.0 7.9E-33 2.7E-37 271.2 5.1 163 147-357 202-375 (467)
9 3cf2_A TER ATPase, transitiona 99.9 1.7E-28 5.9E-33 256.4 6.7 153 154-356 210-366 (806)
10 4b4t_J 26S protease regulatory 99.9 1.4E-24 4.6E-29 210.3 10.0 113 1-133 279-391 (405)
11 4b4t_M 26S protease regulatory 99.9 4.8E-24 1.6E-28 209.2 13.6 116 1-136 312-427 (434)
12 4b4t_I 26S protease regulatory 99.9 3.2E-24 1.1E-28 208.4 8.6 114 1-134 313-426 (437)
13 4b4t_L 26S protease subunit RP 99.9 1.3E-23 4.5E-28 206.2 9.4 114 1-134 312-425 (437)
14 4b4t_H 26S protease regulatory 99.9 3.9E-23 1.3E-27 202.6 11.9 113 1-133 340-452 (467)
15 4b4t_K 26S protease regulatory 99.9 3.1E-23 1.1E-27 203.2 10.6 116 1-135 303-419 (428)
16 3cf0_A Transitional endoplasmi 99.9 1.8E-23 6.1E-28 196.9 3.2 134 175-356 45-180 (301)
17 2x8a_A Nuclear valosin-contain 99.9 4.1E-23 1.4E-27 192.1 3.9 136 172-357 37-173 (274)
18 3t15_A Ribulose bisphosphate c 99.9 1.4E-23 4.9E-28 196.9 -0.6 136 173-356 30-181 (293)
19 1xwi_A SKD1 protein; VPS4B, AA 99.9 2.7E-22 9.3E-27 190.7 6.8 129 176-356 42-173 (322)
20 2ce7_A Cell division protein F 99.8 2E-22 6.7E-27 200.5 3.3 136 173-356 43-180 (476)
21 3eie_A Vacuolar protein sortin 99.8 1.4E-21 4.9E-26 185.5 0.6 129 176-356 48-178 (322)
22 2zan_A Vacuolar protein sortin 99.8 7E-21 2.4E-25 188.6 4.1 128 177-356 165-295 (444)
23 2x8a_A Nuclear valosin-contain 99.8 9.2E-20 3.2E-24 169.4 11.2 130 1-136 138-269 (274)
24 1lv7_A FTSH; alpha/beta domain 99.8 3.4E-20 1.2E-24 170.0 7.3 134 175-356 41-176 (257)
25 2dhr_A FTSH; AAA+ protein, hex 99.8 4.2E-20 1.4E-24 184.7 8.5 136 174-357 59-196 (499)
26 2qp9_X Vacuolar protein sortin 99.8 4.6E-21 1.6E-25 184.6 1.3 129 176-356 81-211 (355)
27 3hu3_A Transitional endoplasmi 99.8 9.3E-21 3.2E-25 189.5 3.3 134 173-356 232-366 (489)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.8 3.7E-20 1.3E-24 169.5 6.0 135 174-356 34-171 (262)
29 3h4m_A Proteasome-activating n 99.8 4.1E-20 1.4E-24 171.7 4.8 135 174-356 46-182 (285)
30 2r62_A Cell division protease 99.8 1.2E-19 4.1E-24 167.2 1.5 134 175-356 40-177 (268)
31 3cf0_A Transitional endoplasmi 99.7 3E-17 1E-21 154.3 14.3 138 1-145 146-293 (301)
32 3d8b_A Fidgetin-like protein 1 99.7 1E-18 3.4E-23 168.3 3.8 128 177-356 115-245 (357)
33 1xwi_A SKD1 protein; VPS4B, AA 99.7 4.8E-17 1.6E-21 154.5 14.1 137 2-146 141-312 (322)
34 2c9o_A RUVB-like 1; hexameric 99.7 3.4E-19 1.2E-23 177.0 -1.0 132 176-356 60-216 (456)
35 1ixz_A ATP-dependent metallopr 99.7 2.9E-18 9.9E-23 156.8 4.3 132 177-356 47-180 (254)
36 3vfd_A Spastin; ATPase, microt 99.7 3.2E-18 1.1E-22 166.5 3.2 126 178-355 147-275 (389)
37 3b9p_A CG5977-PA, isoform A; A 99.7 3.7E-18 1.3E-22 159.5 2.5 127 178-356 53-183 (297)
38 3pxi_A Negative regulator of g 99.7 1.6E-16 5.6E-21 167.1 14.2 87 6-95 288-385 (758)
39 1ypw_A Transitional endoplasmi 99.7 2.5E-17 8.6E-22 174.0 5.3 153 154-356 210-366 (806)
40 1r6b_X CLPA protein; AAA+, N-t 99.7 6.9E-17 2.4E-21 169.9 8.1 271 6-356 312-647 (758)
41 2qp9_X Vacuolar protein sortin 99.7 4.5E-16 1.5E-20 149.7 12.9 136 2-145 179-343 (355)
42 1d2n_A N-ethylmaleimide-sensit 99.7 6.9E-17 2.4E-21 149.2 6.7 175 131-356 16-192 (272)
43 2zan_A Vacuolar protein sortin 99.7 7.2E-16 2.5E-20 152.5 13.8 139 1-147 262-435 (444)
44 3eie_A Vacuolar protein sortin 99.7 3.2E-16 1.1E-20 148.5 10.8 130 2-137 146-304 (322)
45 1iy2_A ATP-dependent metallopr 99.7 3E-17 1E-21 152.3 3.6 132 177-356 71-204 (278)
46 3hu3_A Transitional endoplasmi 99.6 2.1E-16 7.2E-21 157.9 9.7 144 2-155 333-478 (489)
47 2ce7_A Cell division protein F 99.6 8.1E-16 2.8E-20 152.9 9.8 113 1-133 146-258 (476)
48 1ixz_A ATP-dependent metallopr 99.6 2E-15 6.8E-20 137.9 11.3 108 1-127 146-253 (254)
49 1lv7_A FTSH; alpha/beta domain 99.6 2.9E-15 9.9E-20 137.1 12.1 109 2-129 143-251 (257)
50 1g41_A Heat shock protein HSLU 99.6 6.3E-17 2.2E-21 159.0 -1.4 121 178-357 49-173 (444)
51 1iy2_A ATP-dependent metallopr 99.6 1.1E-14 3.7E-19 135.0 12.2 108 1-127 170-277 (278)
52 2dhr_A FTSH; AAA+ protein, hex 99.6 2.6E-15 9E-20 150.0 7.8 114 1-134 161-274 (499)
53 3h4m_A Proteasome-activating n 99.5 6.5E-14 2.2E-18 129.7 10.7 109 2-129 149-257 (285)
54 1qvr_A CLPB protein; coiled co 99.5 4.4E-14 1.5E-18 150.4 8.4 84 7-93 297-390 (854)
55 2qz4_A Paraplegin; AAA+, SPG7, 99.5 4.2E-14 1.4E-18 129.0 6.7 114 2-133 138-251 (262)
56 3kw6_A 26S protease regulatory 99.4 1.5E-13 5.1E-18 102.9 7.4 72 39-129 1-72 (78)
57 2krk_A 26S protease regulatory 99.4 1E-13 3.6E-18 105.7 6.3 77 38-134 8-84 (86)
58 2r62_A Cell division protease 99.4 3E-14 1E-18 130.9 3.7 108 8-135 150-257 (268)
59 3b9p_A CG5977-PA, isoform A; A 99.4 7.7E-13 2.6E-17 123.3 8.9 119 8-135 158-276 (297)
60 3d8b_A Fidgetin-like protein 1 99.4 1.4E-12 4.9E-17 125.2 9.7 121 7-136 219-339 (357)
61 3vlf_B 26S protease regulatory 99.3 2.6E-12 9E-17 98.4 6.8 74 42-135 2-75 (88)
62 3aji_B S6C, proteasome (prosom 99.3 1.6E-12 5.3E-17 98.5 5.0 75 42-136 2-76 (83)
63 3vfd_A Spastin; ATPase, microt 99.3 9.6E-12 3.3E-16 120.7 9.5 120 7-135 250-369 (389)
64 3hws_A ATP-dependent CLP prote 99.2 1.3E-12 4.4E-17 125.6 0.5 101 178-325 50-157 (363)
65 3syl_A Protein CBBX; photosynt 99.2 1.3E-12 4.5E-17 122.2 -0.5 127 177-355 65-197 (309)
66 3m6a_A ATP-dependent protease 99.2 2.8E-12 9.5E-17 129.9 0.5 126 179-355 108-247 (543)
67 3cmw_A Protein RECA, recombina 99.2 3E-12 1E-16 142.5 -0.1 71 270-341 1145-1219(1706)
68 2dzn_B 26S protease regulatory 99.1 2.5E-11 8.6E-16 91.6 2.7 72 44-134 1-72 (82)
69 1um8_A ATP-dependent CLP prote 99.1 4.3E-11 1.5E-15 115.4 4.9 128 178-355 71-224 (376)
70 1ofh_A ATP-dependent HSL prote 99.1 1.8E-11 6.1E-16 114.1 1.7 128 178-355 49-195 (310)
71 1jbk_A CLPB protein; beta barr 98.9 1.2E-10 4.1E-15 99.8 -0.5 76 269-355 98-179 (195)
72 2p65_A Hypothetical protein PF 98.9 9E-11 3.1E-15 100.5 -1.7 77 270-356 99-181 (187)
73 3uk6_A RUVB-like 2; hexameric 98.9 1E-09 3.4E-14 105.0 4.1 143 178-355 69-253 (368)
74 3pfi_A Holliday junction ATP-d 98.8 2.1E-09 7.1E-14 101.7 4.8 108 178-356 54-178 (338)
75 1qvr_A CLPB protein; coiled co 98.8 5.8E-10 2E-14 118.7 0.8 131 178-355 190-326 (854)
76 3t15_A Ribulose bisphosphate c 98.8 2.6E-09 9E-14 99.6 4.4 72 6-87 152-223 (293)
77 3te6_A Regulatory protein SIR3 98.8 2.1E-09 7.2E-14 101.3 3.7 139 178-354 44-189 (318)
78 1r6b_X CLPA protein; AAA+, N-t 98.8 2.5E-09 8.4E-14 112.4 3.5 81 265-355 258-343 (758)
79 2v1u_A Cell division control p 98.8 9.2E-09 3.1E-13 98.3 7.0 145 178-355 43-193 (387)
80 3f9v_A Minichromosome maintena 98.7 1.2E-08 4.1E-13 104.2 5.2 56 286-356 392-471 (595)
81 3pxg_A Negative regulator of g 98.6 3.7E-09 1.3E-13 105.0 -0.2 115 178-356 200-320 (468)
82 3pxi_A Negative regulator of g 98.6 4.2E-09 1.4E-13 110.6 -0.2 115 177-355 199-319 (758)
83 4fcw_A Chaperone protein CLPB; 98.6 1.2E-08 4E-13 95.1 2.6 58 284-356 118-210 (311)
84 1hqc_A RUVB; extended AAA-ATPa 98.6 1.9E-08 6.6E-13 94.2 3.7 107 178-354 37-160 (324)
85 3n70_A Transport activator; si 98.5 5.7E-08 2E-12 80.7 3.0 103 179-354 24-127 (145)
86 3u61_B DNA polymerase accessor 98.5 2.3E-08 8E-13 93.9 0.4 110 179-355 48-159 (324)
87 3pvs_A Replication-associated 98.5 1.9E-08 6.4E-13 99.4 -0.4 104 179-356 50-160 (447)
88 3co5_A Putative two-component 98.4 2.1E-07 7E-12 77.2 5.4 89 179-340 27-116 (143)
89 2qby_B CDC6 homolog 3, cell di 98.4 1E-07 3.6E-12 91.1 4.2 67 271-355 120-190 (384)
90 2chg_A Replication factor C sm 98.4 1.9E-07 6.4E-12 81.5 5.2 55 284-355 101-155 (226)
91 4akg_A Glutathione S-transfera 98.4 3.3E-07 1.1E-11 106.5 8.5 66 283-355 1334-1412(2695)
92 1g8p_A Magnesium-chelatase 38 98.4 1E-07 3.5E-12 90.1 3.3 57 285-356 144-212 (350)
93 1l8q_A Chromosomal replication 98.4 1.2E-08 4.1E-13 96.1 -3.4 57 285-354 98-157 (324)
94 3nbx_X ATPase RAVA; AAA+ ATPas 98.4 2.2E-07 7.4E-12 92.8 4.5 57 285-356 109-176 (500)
95 2r44_A Uncharacterized protein 98.3 1.1E-07 3.8E-12 89.6 1.5 56 286-356 110-179 (331)
96 2qby_A CDC6 homolog 1, cell di 98.3 1.2E-07 4.1E-12 90.3 1.5 71 272-354 114-188 (386)
97 1sxj_A Activator 1 95 kDa subu 98.3 2.8E-07 9.5E-12 92.5 4.0 118 178-349 76-199 (516)
98 1ojl_A Transcriptional regulat 98.2 6.7E-07 2.3E-11 83.7 4.3 39 179-234 25-64 (304)
99 3cmu_A Protein RECA, recombina 98.2 5.7E-07 1.9E-11 101.7 4.4 131 178-337 1426-1561(2050)
100 1njg_A DNA polymerase III subu 98.2 1.1E-06 3.8E-11 77.4 5.5 63 274-353 111-177 (250)
101 2vhj_A Ntpase P4, P4; non- hyd 98.2 6.6E-08 2.2E-12 90.8 -3.0 75 269-347 168-242 (331)
102 2z4s_A Chromosomal replication 98.2 8.3E-08 2.8E-12 94.5 -2.6 58 284-354 193-253 (440)
103 2chq_A Replication factor C sm 98.2 1.5E-06 5E-11 80.7 5.7 54 284-354 101-154 (319)
104 2c9o_A RUVB-like 1; hexameric 98.1 3.1E-08 1.1E-12 98.0 -8.5 73 5-90 186-262 (456)
105 1a5t_A Delta prime, HOLB; zinc 98.1 1E-05 3.5E-10 76.5 9.0 61 274-349 93-157 (334)
106 1fnn_A CDC6P, cell division co 98.1 1.3E-06 4.3E-11 83.5 2.7 56 284-354 124-184 (389)
107 2bjv_A PSP operon transcriptio 98.0 9.9E-07 3.4E-11 80.3 0.8 39 179-234 29-68 (265)
108 1sxj_D Activator 1 41 kDa subu 98.0 1.8E-06 6.1E-11 81.5 2.0 54 284-354 132-185 (353)
109 3pfi_A Holliday junction ATP-d 98.0 2.9E-05 9.9E-10 73.0 10.2 100 9-129 154-253 (338)
110 1jr3_A DNA polymerase III subu 98.0 1.6E-05 5.3E-10 75.5 8.4 52 283-349 117-168 (373)
111 2r2a_A Uncharacterized protein 97.9 1E-05 3.4E-10 71.0 5.4 63 284-357 86-148 (199)
112 1svm_A Large T antigen; AAA+ f 97.9 2.5E-06 8.6E-11 82.1 1.6 62 287-357 218-280 (377)
113 1g41_A Heat shock protein HSLU 97.9 1.6E-06 5.4E-11 85.1 0.0 50 1-52 139-190 (444)
114 1sxj_B Activator 1 37 kDa subu 97.9 3E-06 1E-10 78.7 1.9 54 284-354 106-159 (323)
115 3m6a_A ATP-dependent protease 97.9 2.3E-05 7.9E-10 79.1 8.3 110 8-129 223-340 (543)
116 1iqp_A RFCS; clamp loader, ext 97.9 4.1E-06 1.4E-10 78.0 2.4 54 284-354 109-162 (327)
117 3bos_A Putative DNA replicatio 97.9 2.3E-06 7.9E-11 75.8 0.4 22 178-204 51-73 (242)
118 3uk6_A RUVB-like 2; hexameric 97.8 4.6E-05 1.6E-09 72.3 9.1 92 17-129 238-329 (368)
119 2gno_A DNA polymerase III, gam 97.8 3.5E-05 1.2E-09 72.0 7.2 55 285-355 82-136 (305)
120 3syl_A Protein CBBX; photosynt 97.7 4.2E-05 1.5E-09 70.7 6.5 112 7-126 167-290 (309)
121 1hqc_A RUVB; extended AAA-ATPa 97.7 6.8E-05 2.3E-09 69.8 7.9 79 8-92 137-215 (324)
122 1in4_A RUVB, holliday junction 97.7 2.3E-05 7.7E-10 74.1 4.7 59 285-355 102-173 (334)
123 1njg_A DNA polymerase III subu 97.6 0.00026 9E-09 61.8 9.7 95 7-127 154-248 (250)
124 2r44_A Uncharacterized protein 97.5 0.00056 1.9E-08 63.9 11.7 105 8-129 149-296 (331)
125 1sxj_C Activator 1 40 kDa subu 97.5 3.9E-05 1.3E-09 72.4 3.6 53 285-354 110-162 (340)
126 3bos_A Putative DNA replicatio 97.5 0.00042 1.4E-08 60.9 9.6 96 11-128 141-241 (242)
127 2chg_A Replication factor C sm 97.5 0.00044 1.5E-08 59.7 9.1 95 7-128 130-224 (226)
128 3ec2_A DNA replication protein 97.4 5.9E-05 2E-09 64.2 2.2 26 174-204 33-59 (180)
129 1g8p_A Magnesium-chelatase 38 97.4 0.00075 2.6E-08 63.2 10.1 104 9-129 187-321 (350)
130 1in4_A RUVB, holliday junction 97.3 0.0014 4.8E-08 61.6 11.4 100 9-129 150-249 (334)
131 4fcw_A Chaperone protein CLPB; 97.3 0.00029 1E-08 65.0 6.6 94 8-103 159-286 (311)
132 1ofh_A ATP-dependent HSL prote 97.3 0.00055 1.9E-08 62.9 8.3 112 7-129 166-298 (310)
133 1sxj_E Activator 1 40 kDa subu 97.3 0.00015 5E-09 68.4 4.5 53 284-353 133-185 (354)
134 4akg_A Glutathione S-transfera 97.3 0.00089 3E-08 78.3 11.2 46 9-57 1384-1434(2695)
135 3k1j_A LON protease, ATP-depen 97.2 4.4E-05 1.5E-09 78.0 -0.0 60 285-355 201-277 (604)
136 1w5s_A Origin recognition comp 97.2 8.3E-05 2.8E-09 71.4 1.9 59 284-349 137-204 (412)
137 3pxg_A Negative regulator of g 97.2 0.00043 1.5E-08 68.4 7.0 86 6-94 288-384 (468)
138 2v1u_A Cell division control p 97.2 0.0011 3.8E-08 62.6 9.1 104 7-129 165-275 (387)
139 1d2n_A N-ethylmaleimide-sensit 97.1 0.00038 1.3E-08 63.3 5.1 77 7-92 165-246 (272)
140 2z4s_A Chromosomal replication 97.0 0.0012 4E-08 64.7 7.6 101 7-129 226-331 (440)
141 3f9v_A Minichromosome maintena 96.9 0.0015 5.2E-08 66.4 7.2 47 8-57 433-493 (595)
142 2qby_B CDC6 homolog 3, cell di 96.8 0.0038 1.3E-07 59.1 9.2 102 8-129 163-269 (384)
143 2w58_A DNAI, primosome compone 96.5 0.00042 1.4E-08 59.9 0.2 21 180-205 55-76 (202)
144 2kjq_A DNAA-related protein; s 96.5 0.00029 1E-08 58.5 -1.0 21 179-204 36-57 (149)
145 2qgz_A Helicase loader, putati 96.5 0.00026 8.8E-09 66.1 -1.7 22 179-205 152-174 (308)
146 2qby_A CDC6 homolog 1, cell di 96.3 0.014 4.8E-07 54.8 9.6 104 7-129 161-271 (386)
147 1jr3_A DNA polymerase III subu 96.3 0.024 8.2E-07 53.2 11.2 79 7-92 147-225 (373)
148 1l8q_A Chromosomal replication 96.3 0.013 4.5E-07 54.4 9.1 80 7-94 130-214 (324)
149 1fnn_A CDC6P, cell division co 96.2 0.013 4.6E-07 55.2 8.9 104 8-129 158-273 (389)
150 1ny5_A Transcriptional regulat 96.1 0.0063 2.2E-07 58.4 6.0 38 180-234 161-199 (387)
151 1sxj_D Activator 1 41 kDa subu 96.1 0.026 9E-07 52.5 10.0 101 8-129 162-262 (353)
152 2chq_A Replication factor C sm 96.1 0.025 8.5E-07 51.7 9.6 77 8-91 131-207 (319)
153 3pvs_A Replication-associated 96.1 0.031 1.1E-06 54.7 10.7 105 8-129 133-243 (447)
154 3f8t_A Predicted ATPase involv 95.9 0.0018 6.2E-08 63.6 0.9 56 287-357 302-375 (506)
155 3cmw_A Protein RECA, recombina 95.6 0.0079 2.7E-07 67.6 4.9 91 249-342 1476-1570(1706)
156 3cmu_A Protein RECA, recombina 95.4 0.0035 1.2E-07 71.3 1.1 76 268-343 1142-1221(2050)
157 1xp8_A RECA protein, recombina 95.4 0.0082 2.8E-07 57.3 3.5 69 268-336 135-207 (366)
158 1sxj_B Activator 1 37 kDa subu 95.4 0.073 2.5E-06 48.6 9.8 77 8-91 136-212 (323)
159 1sxj_E Activator 1 40 kDa subu 95.3 0.058 2E-06 50.3 8.8 78 8-92 163-241 (354)
160 3nbx_X ATPase RAVA; AAA+ ATPas 95.2 0.032 1.1E-06 55.4 7.2 86 10-97 150-268 (500)
161 1iqp_A RFCS; clamp loader, ext 95.0 0.051 1.7E-06 49.8 7.6 78 7-91 138-215 (327)
162 3hr8_A Protein RECA; alpha and 95.0 0.014 4.8E-07 55.4 3.8 72 268-340 122-197 (356)
163 2zr9_A Protein RECA, recombina 95.0 0.0096 3.3E-07 56.4 2.5 69 269-337 123-195 (349)
164 3vkg_A Dynein heavy chain, cyt 94.9 0.037 1.2E-06 65.7 7.5 67 283-356 1372-1451(3245)
165 3u61_B DNA polymerase accessor 94.9 0.034 1.2E-06 51.4 5.9 68 8-78 135-207 (324)
166 3io5_A Recombination and repai 94.8 0.023 7.8E-07 53.1 4.4 73 268-341 91-172 (333)
167 1tue_A Replication protein E1; 94.2 0.027 9.4E-07 49.2 3.2 21 179-204 58-79 (212)
168 1w5s_A Origin recognition comp 93.8 0.22 7.6E-06 47.1 9.3 103 8-129 178-292 (412)
169 3dzd_A Transcriptional regulat 93.6 0.027 9.2E-07 53.6 2.4 19 180-203 153-172 (368)
170 3k1j_A LON protease, ATP-depen 93.3 0.09 3.1E-06 53.4 5.8 104 9-129 252-374 (604)
171 3vkg_A Dynein heavy chain, cyt 93.2 0.26 8.9E-06 58.7 10.0 47 8-57 1421-1472(3245)
172 3hws_A ATP-dependent CLP prote 92.6 0.2 7E-06 47.0 6.9 75 22-98 239-325 (363)
173 2cvh_A DNA repair and recombin 92.6 0.079 2.7E-06 45.6 3.7 27 273-300 94-120 (220)
174 3te6_A Regulatory protein SIR3 92.4 0.51 1.7E-05 43.9 9.1 50 6-57 160-214 (318)
175 2z43_A DNA repair and recombin 92.1 0.035 1.2E-06 51.8 0.7 62 273-336 190-254 (324)
176 1a5t_A Delta prime, HOLB; zinc 91.9 0.31 1.1E-05 45.3 7.1 72 7-90 136-207 (334)
177 1u94_A RECA protein, recombina 91.6 0.052 1.8E-06 51.5 1.4 67 270-336 126-196 (356)
178 2qen_A Walker-type ATPase; unk 91.2 0.094 3.2E-06 48.4 2.6 19 180-203 32-51 (350)
179 2fna_A Conserved hypothetical 90.5 0.3 1E-05 45.0 5.4 19 180-203 31-50 (357)
180 1um8_A ATP-dependent CLP prote 90.4 0.27 9.3E-06 46.4 5.1 97 22-129 256-364 (376)
181 2orw_A Thymidine kinase; TMTK, 90.2 0.34 1.2E-05 41.1 5.1 19 278-297 70-88 (184)
182 1sxj_A Activator 1 95 kDa subu 90.1 1.4 4.7E-05 43.6 10.2 70 9-89 181-250 (516)
183 2i1q_A DNA repair and recombin 89.4 0.16 5.5E-06 46.9 2.6 64 273-336 191-255 (322)
184 1v5w_A DMC1, meiotic recombina 89.1 0.076 2.6E-06 49.9 0.1 61 275-337 207-271 (343)
185 1n0w_A DNA repair protein RAD5 89.1 0.096 3.3E-06 45.8 0.7 27 274-300 108-134 (243)
186 1ojl_A Transcriptional regulat 89.0 0.18 6E-06 46.5 2.5 83 8-93 136-233 (304)
187 2bjv_A PSP operon transcriptio 88.2 0.79 2.7E-05 40.7 6.3 83 8-93 140-238 (265)
188 1sxj_C Activator 1 40 kDa subu 86.3 1.3 4.4E-05 41.0 6.7 65 8-78 139-203 (340)
189 3lda_A DNA repair protein RAD5 86.3 0.2 7E-06 48.1 1.2 65 274-338 262-326 (400)
190 4a74_A DNA repair and recombin 84.6 0.14 4.8E-06 44.2 -0.8 18 283-300 123-140 (231)
191 3f8t_A Predicted ATPase involv 84.3 5.1 0.00017 39.3 10.0 105 8-129 338-482 (506)
192 4gp7_A Metallophosphoesterase; 83.2 1.7 5.9E-05 35.9 5.5 70 274-344 90-163 (171)
193 2b8t_A Thymidine kinase; deoxy 81.8 0.59 2E-05 41.1 2.1 15 283-297 87-101 (223)
194 2r6a_A DNAB helicase, replicat 80.6 0.9 3.1E-05 44.2 3.2 24 277-300 305-328 (454)
195 2w0m_A SSO2452; RECA, SSPF, un 80.0 1.2 4.2E-05 38.0 3.5 29 270-298 106-136 (235)
196 2iut_A DNA translocase FTSK; n 79.5 5.9 0.0002 39.7 8.7 53 285-347 343-397 (574)
197 1ye8_A Protein THEP1, hypothet 79.5 1.4 4.9E-05 36.9 3.7 17 182-203 3-20 (178)
198 1pzn_A RAD51, DNA repair and r 78.3 0.53 1.8E-05 44.2 0.6 58 284-343 230-289 (349)
199 3e1s_A Exodeoxyribonuclease V, 76.5 2.6 8.9E-05 42.3 5.2 42 284-341 278-319 (574)
200 2ehv_A Hypothetical protein PH 75.8 1.5 5.1E-05 38.0 2.9 66 270-343 120-185 (251)
201 2zts_A Putative uncharacterize 75.5 1.4 4.9E-05 38.1 2.7 32 269-300 119-150 (251)
202 2gno_A DNA polymerase III, gam 74.5 2.1 7.3E-05 39.2 3.6 43 7-54 110-152 (305)
203 2dr3_A UPF0273 protein PH0284; 73.2 8.1 0.00028 33.1 7.0 28 271-298 114-141 (247)
204 3dm5_A SRP54, signal recogniti 72.8 5.4 0.00018 38.7 6.1 91 178-294 99-191 (443)
205 1u0j_A DNA replication protein 72.6 1.5 5E-05 39.7 1.9 20 179-203 104-124 (267)
206 2q6t_A DNAB replication FORK h 72.0 5.5 0.00019 38.4 6.1 18 282-299 307-324 (444)
207 1w36_D RECD, exodeoxyribonucle 71.4 4.8 0.00016 40.6 5.7 44 285-344 262-305 (608)
208 1q57_A DNA primase/helicase; d 70.2 5 0.00017 39.3 5.4 30 270-299 339-368 (503)
209 1jr3_D DNA polymerase III, del 68.9 2.1 7.1E-05 39.6 2.2 51 285-349 76-132 (343)
210 3upu_A ATP-dependent DNA helic 66.8 9.5 0.00033 36.8 6.6 39 285-339 128-166 (459)
211 1ny5_A Transcriptional regulat 65.5 4.9 0.00017 38.0 4.1 81 9-94 272-369 (387)
212 2px0_A Flagellar biosynthesis 64.6 18 0.00063 32.7 7.7 20 179-203 105-125 (296)
213 2ius_A DNA translocase FTSK; n 63.5 5.4 0.00018 39.4 4.0 54 284-347 295-351 (512)
214 3crm_A TRNA delta(2)-isopenten 61.7 1.1 3.7E-05 41.7 -1.3 19 180-203 6-25 (323)
215 1jr3_D DNA polymerase III, del 61.2 33 0.0011 31.2 8.9 76 9-91 107-188 (343)
216 3kl4_A SRP54, signal recogniti 60.6 16 0.00054 35.2 6.7 26 269-294 163-188 (433)
217 3trf_A Shikimate kinase, SK; a 60.2 1.9 6.4E-05 35.7 0.1 20 179-203 5-25 (185)
218 1g5t_A COB(I)alamin adenosyltr 60.0 15 0.0005 31.4 5.7 57 272-340 103-163 (196)
219 1svm_A Large T antigen; AAA+ f 58.0 1 3.5E-05 42.9 -2.2 31 9-40 254-284 (377)
220 1qhx_A CPT, protein (chloramph 57.5 2.5 8.7E-05 34.6 0.4 20 181-205 5-25 (178)
221 3bh0_A DNAB-like replicative h 57.1 7 0.00024 35.7 3.4 15 180-196 69-84 (315)
222 1hv8_A Putative ATP-dependent 57.1 62 0.0021 29.0 10.0 33 267-299 128-161 (367)
223 3vaa_A Shikimate kinase, SK; s 55.6 2.6 8.8E-05 35.6 0.1 21 178-203 24-45 (199)
224 1via_A Shikimate kinase; struc 52.7 2.6 9E-05 34.6 -0.3 18 181-203 6-24 (175)
225 3kb2_A SPBC2 prophage-derived 52.6 2.9 0.0001 33.8 0.0 19 181-204 3-22 (173)
226 1ly1_A Polynucleotide kinase; 51.9 5 0.00017 32.6 1.3 20 180-204 3-23 (181)
227 1vma_A Cell division protein F 51.3 16 0.00053 33.4 4.7 28 267-294 168-195 (306)
228 1w4r_A Thymidine kinase; type 51.0 9.9 0.00034 32.5 3.1 19 182-205 23-43 (195)
229 2rhm_A Putative kinase; P-loop 50.7 3.9 0.00013 33.8 0.5 21 179-204 5-26 (193)
230 1zuh_A Shikimate kinase; alpha 49.7 3.4 0.00012 33.6 -0.1 20 179-203 7-27 (168)
231 2iyv_A Shikimate kinase, SK; t 48.9 3.4 0.00012 34.1 -0.2 17 182-203 5-22 (184)
232 2fz4_A DNA repair protein RAD2 48.6 5.2 0.00018 34.9 1.0 14 181-196 110-124 (237)
233 3jvv_A Twitching mobility prot 48.2 5.5 0.00019 37.3 1.2 17 278-294 189-205 (356)
234 1y63_A LMAJ004144AAA protein; 47.6 4.9 0.00017 33.4 0.6 21 180-205 11-32 (184)
235 3be4_A Adenylate kinase; malar 46.6 4.6 0.00016 34.5 0.3 20 180-204 6-26 (217)
236 3iij_A Coilin-interacting nucl 46.0 3.9 0.00013 33.6 -0.2 21 179-204 11-32 (180)
237 1kag_A SKI, shikimate kinase I 46.0 4.8 0.00017 32.6 0.3 18 181-203 6-24 (173)
238 2vli_A Antibiotic resistance p 45.9 4.5 0.00015 33.1 0.1 20 180-204 6-26 (183)
239 3ly5_A ATP-dependent RNA helic 45.2 26 0.00091 30.6 5.2 67 265-344 179-247 (262)
240 1zp6_A Hypothetical protein AT 44.6 8.7 0.0003 31.6 1.7 20 180-204 10-30 (191)
241 3dl0_A Adenylate kinase; phosp 44.5 5.3 0.00018 33.9 0.4 17 182-203 3-20 (216)
242 1e6c_A Shikimate kinase; phosp 44.5 4.2 0.00014 32.9 -0.3 18 181-203 4-22 (173)
243 1aky_A Adenylate kinase; ATP:A 44.2 4.9 0.00017 34.3 0.1 21 179-204 4-25 (220)
244 2pt7_A CAG-ALFA; ATPase, prote 44.1 25 0.00084 32.3 4.9 21 180-205 172-193 (330)
245 2cdn_A Adenylate kinase; phosp 44.0 4.5 0.00015 34.0 -0.2 20 180-204 21-41 (201)
246 1zd8_A GTP:AMP phosphotransfer 43.8 6 0.0002 33.9 0.6 21 179-204 7-28 (227)
247 3iuy_A Probable ATP-dependent 43.2 37 0.0013 28.6 5.7 65 266-343 147-212 (228)
248 3lw7_A Adenylate kinase relate 42.8 9.1 0.00031 30.5 1.5 17 182-203 4-21 (179)
249 2ze6_A Isopentenyl transferase 42.4 6.1 0.00021 34.9 0.4 19 181-204 3-22 (253)
250 1zak_A Adenylate kinase; ATP:A 42.3 5.3 0.00018 34.1 0.0 21 179-204 5-26 (222)
251 1ukz_A Uridylate kinase; trans 41.4 8 0.00027 32.3 1.0 21 179-204 15-36 (203)
252 3cm0_A Adenylate kinase; ATP-b 41.4 5.1 0.00017 32.9 -0.3 19 181-204 6-25 (186)
253 2a5y_B CED-4; apoptosis; HET: 41.2 37 0.0012 33.4 6.0 21 179-204 152-173 (549)
254 1tev_A UMP-CMP kinase; ploop, 40.6 6.2 0.00021 32.4 0.2 20 180-204 4-24 (196)
255 3bgw_A DNAB-like replicative h 40.4 28 0.00095 33.5 4.8 15 180-196 198-213 (444)
256 2oap_1 GSPE-2, type II secreti 40.3 14 0.0005 36.3 2.8 21 179-204 260-281 (511)
257 1ak2_A Adenylate kinase isoenz 40.3 6.3 0.00022 34.0 0.2 21 179-204 16-37 (233)
258 2ga8_A Hypothetical 39.9 kDa p 40.2 6.3 0.00022 37.1 0.2 20 179-203 24-44 (359)
259 2c95_A Adenylate kinase 1; tra 40.2 6.3 0.00021 32.6 0.1 21 179-204 9-30 (196)
260 1kht_A Adenylate kinase; phosp 40.1 4.8 0.00016 33.1 -0.6 20 181-205 5-25 (192)
261 3sr0_A Adenylate kinase; phosp 40.1 5.5 0.00019 34.2 -0.2 17 182-203 3-20 (206)
262 1vc3_B L-aspartate-alpha-decar 39.8 19 0.00064 27.0 2.6 21 278-298 71-91 (96)
263 2pt5_A Shikimate kinase, SK; a 39.0 5.9 0.0002 31.9 -0.2 18 182-204 3-21 (168)
264 3fb4_A Adenylate kinase; psych 38.9 6 0.0002 33.5 -0.2 17 182-203 3-20 (216)
265 3tlx_A Adenylate kinase 2; str 38.3 7.4 0.00025 34.0 0.3 22 178-204 28-50 (243)
266 2bwj_A Adenylate kinase 5; pho 38.2 6.1 0.00021 32.8 -0.3 20 180-204 13-33 (199)
267 1vec_A ATP-dependent RNA helic 37.8 44 0.0015 27.4 5.2 65 266-343 126-191 (206)
268 1sgw_A Putative ABC transporte 37.7 25 0.00084 30.2 3.6 69 275-356 141-213 (214)
269 1qf9_A UMP/CMP kinase, protein 37.4 8.5 0.00029 31.5 0.5 21 179-204 6-27 (194)
270 3bor_A Human initiation factor 37.3 42 0.0014 28.6 5.1 61 266-338 153-214 (237)
271 2pl3_A Probable ATP-dependent 37.3 55 0.0019 27.7 5.9 61 266-338 150-212 (236)
272 3oug_A Aspartate 1-decarboxyla 37.1 23 0.0008 27.2 2.9 17 278-295 98-114 (114)
273 1q0u_A Bstdead; DEAD protein, 37.0 53 0.0018 27.4 5.7 65 266-343 130-195 (219)
274 3fe2_A Probable ATP-dependent 37.0 50 0.0017 28.1 5.6 65 266-343 156-221 (242)
275 2gxq_A Heat resistant RNA depe 36.9 51 0.0017 27.0 5.5 63 267-342 125-188 (207)
276 3t61_A Gluconokinase; PSI-biol 36.7 6.8 0.00023 32.8 -0.2 58 286-343 112-169 (202)
277 4ag6_A VIRB4 ATPase, type IV s 36.6 36 0.0012 31.7 4.9 52 284-345 261-312 (392)
278 3dkp_A Probable ATP-dependent 36.4 56 0.0019 27.8 5.8 35 266-300 153-190 (245)
279 3ber_A Probable ATP-dependent 36.1 56 0.0019 28.2 5.8 61 266-338 165-227 (249)
280 3umf_A Adenylate kinase; rossm 35.9 9.3 0.00032 33.1 0.6 20 179-203 29-49 (217)
281 2j9r_A Thymidine kinase; TK1, 35.9 23 0.00078 30.7 3.0 20 277-297 94-113 (214)
282 3dzd_A Transcriptional regulat 35.9 43 0.0015 31.1 5.3 81 9-93 263-359 (368)
283 1nks_A Adenylate kinase; therm 35.7 16 0.00053 29.8 1.9 21 181-206 3-24 (194)
284 1wrb_A DJVLGB; RNA helicase, D 35.5 53 0.0018 28.1 5.5 63 266-337 154-218 (253)
285 2r2a_A Uncharacterized protein 35.2 17 0.00058 30.9 2.1 36 8-45 122-157 (199)
286 2ewv_A Twitching motility prot 35.0 14 0.00048 34.6 1.7 21 179-204 136-157 (372)
287 1e4v_A Adenylate kinase; trans 34.8 7.4 0.00025 33.0 -0.3 18 182-204 3-21 (214)
288 4b3f_X DNA-binding protein smu 34.7 12 0.00042 37.8 1.3 13 182-196 208-221 (646)
289 1xx6_A Thymidine kinase; NESG, 33.2 17 0.00058 30.7 1.7 21 276-297 73-93 (191)
290 3a4m_A L-seryl-tRNA(SEC) kinas 33.1 11 0.00039 33.1 0.7 22 179-205 4-26 (260)
291 3fho_A ATP-dependent RNA helic 32.8 63 0.0021 31.3 6.1 33 267-299 240-273 (508)
292 3fmo_B ATP-dependent RNA helic 32.1 43 0.0015 30.0 4.4 34 266-299 214-249 (300)
293 2xb4_A Adenylate kinase; ATP-b 32.0 8.9 0.0003 32.9 -0.3 18 182-204 3-21 (223)
294 1qde_A EIF4A, translation init 31.8 79 0.0027 26.3 5.9 61 266-338 135-196 (224)
295 2p5t_B PEZT; postsegregational 31.7 12 0.00043 32.6 0.7 22 179-205 32-54 (253)
296 3l9o_A ATP-dependent RNA helic 31.5 26 0.00089 38.0 3.3 34 266-299 270-304 (1108)
297 2v54_A DTMP kinase, thymidylat 31.2 17 0.00057 30.1 1.4 21 181-206 6-27 (204)
298 1knq_A Gluconate kinase; ALFA/ 31.0 9.4 0.00032 31.0 -0.3 20 180-204 9-29 (175)
299 3a8t_A Adenylate isopentenyltr 30.7 24 0.00084 32.7 2.5 19 181-204 42-61 (339)
300 1pqh_A Aspartate 1-decarboxyla 30.4 32 0.0011 27.6 2.7 23 278-300 112-134 (143)
301 1jjv_A Dephospho-COA kinase; P 29.9 20 0.00068 29.8 1.7 18 181-203 4-22 (206)
302 1gvn_B Zeta; postsegregational 29.4 22 0.00077 31.8 2.0 21 179-204 33-54 (287)
303 4a1f_A DNAB helicase, replicat 29.1 28 0.00095 32.3 2.6 16 285-300 156-171 (338)
304 3auy_A DNA double-strand break 28.9 46 0.0016 30.8 4.2 44 284-341 303-347 (371)
305 2oxc_A Probable ATP-dependent 28.5 72 0.0025 26.9 5.1 67 266-344 146-213 (230)
306 2plr_A DTMP kinase, probable t 28.4 21 0.00072 29.5 1.5 22 180-206 5-27 (213)
307 2qmh_A HPR kinase/phosphorylas 28.3 27 0.00091 30.0 2.1 20 179-203 34-54 (205)
308 2jaq_A Deoxyguanosine kinase; 28.3 11 0.00038 31.1 -0.2 19 182-205 3-22 (205)
309 2if2_A Dephospho-COA kinase; a 28.2 18 0.00063 30.0 1.1 18 181-203 3-21 (204)
310 3zvl_A Bifunctional polynucleo 28.1 19 0.00066 34.2 1.4 20 179-203 258-278 (416)
311 1t6n_A Probable ATP-dependent 28.0 1.1E+02 0.0037 25.3 6.2 67 266-344 138-205 (220)
312 3bs4_A Uncharacterized protein 27.2 66 0.0023 28.5 4.7 29 288-321 142-170 (260)
313 1uf9_A TT1252 protein; P-loop, 27.1 23 0.00078 29.2 1.5 20 179-203 8-28 (203)
314 2wwf_A Thymidilate kinase, put 27.1 10 0.00034 31.7 -0.8 21 180-205 11-32 (212)
315 3kta_B Chromosome segregation 26.6 37 0.0013 28.0 2.7 31 284-323 85-115 (173)
316 1e69_A Chromosome segregation 26.4 1E+02 0.0035 27.7 6.0 47 284-344 240-286 (322)
317 2ys9_A Homeobox and leucine zi 26.0 1.4E+02 0.0047 20.9 5.0 36 48-88 19-54 (70)
318 2fna_A Conserved hypothetical 25.5 2.2E+02 0.0074 25.1 8.1 76 8-89 169-251 (357)
319 2pbr_A DTMP kinase, thymidylat 25.5 15 0.00052 30.0 0.1 19 182-205 3-22 (195)
320 1w1w_A Structural maintenance 25.5 60 0.002 30.7 4.3 22 278-299 348-369 (430)
321 2xgj_A ATP-dependent RNA helic 25.2 59 0.002 34.8 4.6 35 266-300 172-207 (1010)
322 2qor_A Guanylate kinase; phosp 25.0 26 0.0009 29.2 1.5 22 180-206 13-35 (204)
323 2ged_A SR-beta, signal recogni 24.4 40 0.0014 27.2 2.6 21 178-203 47-68 (193)
324 3ake_A Cytidylate kinase; CMP 23.8 15 0.00053 30.4 -0.2 18 181-203 4-22 (208)
325 2i4i_A ATP-dependent RNA helic 23.6 1.2E+02 0.004 27.8 6.0 35 266-300 155-190 (417)
326 4eun_A Thermoresistant glucoki 23.1 30 0.001 28.7 1.5 57 287-343 127-183 (200)
327 3r20_A Cytidylate kinase; stru 23.0 16 0.00055 32.0 -0.3 19 180-203 10-29 (233)
328 1cke_A CK, MSSA, protein (cyti 22.8 16 0.00056 30.8 -0.3 19 181-204 7-26 (227)
329 2bdt_A BH3686; alpha-beta prot 22.4 32 0.0011 28.1 1.5 18 182-204 5-23 (189)
330 2z0h_A DTMP kinase, thymidylat 22.4 32 0.0011 28.1 1.5 19 182-205 3-22 (197)
331 3nwj_A ATSK2; P loop, shikimat 22.2 17 0.00058 32.1 -0.3 19 180-203 49-68 (250)
332 1nn5_A Similar to deoxythymidy 21.9 33 0.0011 28.5 1.5 21 180-205 10-31 (215)
333 3fdi_A Uncharacterized protein 21.9 22 0.00074 30.1 0.4 18 181-203 8-26 (201)
334 2h92_A Cytidylate kinase; ross 21.7 22 0.00074 29.9 0.3 18 181-203 5-23 (219)
335 1vht_A Dephospho-COA kinase; s 21.5 27 0.00093 29.3 0.9 19 180-203 5-24 (218)
336 3uie_A Adenylyl-sulfate kinase 21.3 34 0.0012 28.3 1.5 22 179-205 25-47 (200)
337 3foz_A TRNA delta(2)-isopenten 21.2 29 0.001 31.9 1.1 20 180-204 11-31 (316)
338 3b85_A Phosphate starvation-in 21.1 96 0.0033 26.1 4.4 49 278-345 115-163 (208)
339 3b6e_A Interferon-induced heli 21.0 1.4E+02 0.0046 24.3 5.3 32 267-298 137-175 (216)
340 1ltq_A Polynucleotide kinase; 20.9 35 0.0012 30.3 1.5 20 181-205 4-24 (301)
341 2qt1_A Nicotinamide riboside k 20.8 37 0.0013 28.2 1.6 21 180-205 22-43 (207)
342 1sky_E F1-ATPase, F1-ATP synth 20.6 28 0.00095 33.9 0.9 16 284-299 244-259 (473)
343 4a4z_A Antiviral helicase SKI2 20.5 78 0.0027 33.8 4.4 34 266-299 127-161 (997)
344 2xau_A PRE-mRNA-splicing facto 20.3 93 0.0032 32.1 4.8 29 268-296 191-219 (773)
345 2yvu_A Probable adenylyl-sulfa 20.1 38 0.0013 27.5 1.5 21 180-205 14-35 (186)
346 2j41_A Guanylate kinase; GMP, 20.1 38 0.0013 27.8 1.5 21 181-206 8-29 (207)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.8e-57 Score=473.22 Aligned_cols=299 Identities=33% Similarity=0.493 Sum_probs=241.3
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+.++++|+||||||+|+.||+|++||||||++|++++|+.++|.+||+.+++++ ....+.++..||..|+||+
T Consensus 332 mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~----~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS----EECTTCCHHHHHHHCCSCC
T ss_pred HhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC----CCCcccCHHHHHHhcCCCC
Confidence 578888889999999999999999999999999999999999999999999999887 4667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc--cccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc--
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNK--VEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP-- 156 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~--~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~-- 156 (358)
|+||.++|++|++.++++..+.... .....+..+...++.+||..|+.. ++|+.... .....+.+.|.+.
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~-~~ps~~r~-----~~~~~p~v~w~digg 481 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ-SNPSALRE-----TVVEVPQVTWEDIGG 481 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSS-SSCCCCCC-----CCCBCCCCCSTTCCS
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHh-CCCccccc-----ccccCCCCCHHHhCC
Confidence 9999999999999999997765432 223344456778999999999999 89886433 2345677888872
Q ss_pred ----hhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccccc
Q psy3629 157 ----VQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTL 228 (358)
Q Consensus 157 ----v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (358)
.+.+.+...+.. +.+...+..+++++||||| ||| ||++ |+++ |.+.+.+|+.
T Consensus 482 l~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GP--PGtGKT~l---Akai---------------A~e~~~~f~~ 541 (806)
T 3cf2_A 482 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP--PGCGKTLL---AKAI---------------ANECQANFIS 541 (806)
T ss_dssp CHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESS--TTSSHHHH---HHHH---------------HHTTTCEEEE
T ss_pred HHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecC--CCCCchHH---HHHH---------------HHHhCCceEE
Confidence 222333333322 2344556778899999999 999 9999 9999 9999999999
Q ss_pred ccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCC
Q psy3629 229 AYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGN 307 (358)
Q Consensus 229 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~ 307 (358)
+.++++.++|+|+++.+ |+ ++|+.||+.+||||||||||+|++.|+.. ++.
T Consensus 542 v~~~~l~s~~vGese~~-------------vr---------------~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~ 593 (806)
T 3cf2_A 542 IKGPELLTMWFGESEAN-------------VR---------------EIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp CCHHHHHTTTCSSCHHH-------------HH---------------HHHHHHHTTCSEEEECSCGGGCC----------
T ss_pred eccchhhccccchHHHH-------------HH---------------HHHHHHHHcCCceeechhhhHHhhccCCCCCCC
Confidence 98777777777666555 44 44999999999999999999999999754 344
Q ss_pred cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 308 TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 308 ~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++.+|++|+||++|||+.+.++|+||||||+||.||+|+|||||||.++
T Consensus 594 ~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i 643 (806)
T 3cf2_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp ----CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE
T ss_pred chHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEE
Confidence 56789999999999999999899999999999999999999999999864
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=4e-38 Score=332.75 Aligned_cols=299 Identities=32% Similarity=0.481 Sum_probs=223.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....++++|++||+|+.||+++.|+|||+..+++++|+.++|.++|+.+...+ ....+.++..++..++||+
T Consensus 332 l~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~----~l~~~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLADDVDLEQVANETHGHV 407 (806)
T ss_dssp HHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS----CCCTTCCTHHHHHSCSSCC
T ss_pred hhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC----CCcccchhHHHHHhhcCcc
Confidence 356677788999999999999999999999999999999999999999999998876 4566778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc--cccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCCc--
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNK--VEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGTP-- 156 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~--~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d~-- 156 (358)
++++..+|.+|.+.++++....... ............++.+||..++.. ..|+.... .....+.+.|++.
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~-~~~s~~~~-----~~~~~~~v~~~di~g 481 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ-SNPSALRE-----TVVEVPQVTWEDIGG 481 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHH-SCCCCCCC-----CCCCCCCCSSCSSSC
T ss_pred hHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccc-cCchhhhh-----hcccCcccccccccc
Confidence 9999999999998887764332211 111222334566888999999988 66653221 1223456667662
Q ss_pred ----hhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccccc
Q psy3629 157 ----VQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTL 228 (358)
Q Consensus 157 ----v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (358)
.+.+.+...+.. ......+..+..++||+|| ||| ||.+ |+++ +...+.+++.
T Consensus 482 l~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp--pGtGKT~L---akal---------------a~~~~~~~i~ 541 (806)
T 1ypw_A 482 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGP--PGCGKTLL---AKAI---------------ANECQANFIS 541 (806)
T ss_dssp CCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCC--TTSSHHHH---HHHH---------------HHHHTCCCCC
T ss_pred chhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEE
Confidence 112222221111 1122333456778999999 999 9999 9999 6666677888
Q ss_pred ccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC-C
Q psy3629 229 AYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG-N 307 (358)
Q Consensus 229 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~-~ 307 (358)
+.++++.++|+|.++.. ++++|+.|+...||||||||||.++..|+...+ .
T Consensus 542 v~~~~l~~~~~g~~~~~----------------------------i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~ 593 (806)
T 1ypw_A 542 IKGPELLTMWFGESEAN----------------------------VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDG 593 (806)
T ss_dssp CCCSSSTTCCTTTSSHH----------------------------HHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHH
T ss_pred EechHhhhhhcCccHHH----------------------------HHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCc
Confidence 87777766666665544 455599999999999999999999999865422 2
Q ss_pred cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 308 TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 308 ~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
++..++++++||++|||+....+|+||+|||+|+.||+|++||||||..+
T Consensus 594 ~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i 643 (806)
T 1ypw_A 594 GGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCC
T ss_pred chhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCcee
Confidence 34678999999999999988889999999999999999999999999653
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-35 Score=283.28 Aligned_cols=163 Identities=25% Similarity=0.312 Sum_probs=136.0
Q ss_pred hcCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhccccccccccccc
Q psy3629 147 SRGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEV 216 (358)
Q Consensus 147 ~~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~ 216 (358)
..|.++|+| ..+++.+...+.+ +.++..+..+++|+||||| ||| ||++ |+++
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GP--PGTGKTll---AkAi------------- 202 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGP--PGTGKTLL---ARAV------------- 202 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESC--SSSSHHHH---HHHH-------------
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCC--CCCCHHHH---HHHH-------------
Confidence 467788888 2333444444433 3356667888999999999 999 9999 9999
Q ss_pred ccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 217 TTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
|.+.+.+|+.+.++++.++|+|+++.. |+.+ |..|+..+||||||||||+
T Consensus 203 --A~e~~~~f~~v~~s~l~sk~vGese~~-------------vr~l---------------F~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 203 --AHHTDCKFIRVSGAELVQKYIGEGSRM-------------VREL---------------FVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp --HHHHTCEEEEEEGGGGSCSSTTHHHHH-------------HHHH---------------HHHHHHTCSEEEEEESSSC
T ss_pred --HHhhCCCceEEEhHHhhccccchHHHH-------------HHHH---------------HHHHHHhCCceEeeecchh
Confidence 999999999999888888888777666 5555 9999999999999999999
Q ss_pred hhhhcCCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 297 ICKARGTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 297 ~~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++.|...++ .+...++++++||++|||+....+|+||||||+||.||||++||||||.++
T Consensus 253 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I 314 (405)
T 4b4t_J 253 IGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKI 314 (405)
T ss_dssp CTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEE
T ss_pred hccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEE
Confidence 9999866443 334567899999999999999999999999999999999999999999864
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.9e-34 Score=275.49 Aligned_cols=163 Identities=21% Similarity=0.285 Sum_probs=135.8
Q ss_pred hcCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhccccccccccccc
Q psy3629 147 SRGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEV 216 (358)
Q Consensus 147 ~~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~ 216 (358)
..+.++|+| ..+++.+...+.+ +.++..+..+++|+||||| ||| ||++ |+++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGP--PGTGKTlL---AkAi------------- 236 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGA--PGTGKTLL---AKAV------------- 236 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESS--TTTTHHHH---HHHH-------------
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECC--CCchHHHH---HHHH-------------
Confidence 456788887 3334444444433 3355667788999999999 999 9999 9999
Q ss_pred ccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 217 TTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
|.+.+.+|+.+.++++.++|+|+++.. ++.+ |..|+..+||||||||||+
T Consensus 237 --A~e~~~~fi~v~~s~l~sk~vGesek~-------------ir~l---------------F~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 237 --ANQTSATFLRIVGSELIQKYLGDGPRL-------------CRQI---------------FKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp --HHHHTCEEEEEESGGGCCSSSSHHHHH-------------HHHH---------------HHHHHHTCSEEEEEEEESS
T ss_pred --HHHhCCCEEEEEHHHhhhccCchHHHH-------------HHHH---------------HHHHHhcCCcEEEEehhhh
Confidence 999999999999888888887777666 5555 9999999999999999999
Q ss_pred hhhhcCCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 297 ICKARGTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 297 ~~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++.|...+. .+....+++++||++|||+....+|+||||||+||.||||++||||||.++
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I 348 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKI 348 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEE
T ss_pred hcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEE
Confidence 9999966543 234567899999999999999899999999999999999999999999764
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-33 Score=275.01 Aligned_cols=163 Identities=26% Similarity=0.327 Sum_probs=135.6
Q ss_pred hcCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhccccccccccccc
Q psy3629 147 SRGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEV 216 (358)
Q Consensus 147 ~~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~ 216 (358)
..|.++|+| ..+++.+...+.+ +.++..+..+++|+||||| ||| ||++ |+++
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GP--PGtGKTll---AkAi------------- 235 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGP--PGTGKTLL---AKAV------------- 235 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESC--TTSSHHHH---HHHH-------------
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECC--CCCcHHHH---HHHH-------------
Confidence 356788887 2333444443332 3456667888999999999 999 9999 9999
Q ss_pred ccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 217 TTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
|.+.+.+|+.+.++++.++|+|+++.. ++.+ |..|+..+||||||||||+
T Consensus 236 --A~e~~~~~~~v~~s~l~sk~~Gese~~-------------ir~~---------------F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 236 --AATIGANFIFSPASGIVDKYIGESARI-------------IREM---------------FAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp --HHHHTCEEEEEEGGGTCCSSSSHHHHH-------------HHHH---------------HHHHHHSCSEEEEEECCCS
T ss_pred --HHHhCCCEEEEehhhhccccchHHHHH-------------HHHH---------------HHHHHhcCCceeeeecccc
Confidence 999999999999888888888777666 5555 9999999999999999999
Q ss_pred hhhhcCCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 297 ICKARGTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 297 ~~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++.|...+. .+....+++++||++|||+.+..+|+||||||+||.||||++||||||.++
T Consensus 286 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I 347 (437)
T 4b4t_L 286 IGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKV 347 (437)
T ss_dssp SSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEE
T ss_pred cccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceee
Confidence 9999966543 334567899999999999999899999999999999999999999999864
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.8e-33 Score=274.44 Aligned_cols=162 Identities=26% Similarity=0.320 Sum_probs=134.7
Q ss_pred cCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccc
Q psy3629 148 RGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVT 217 (358)
Q Consensus 148 ~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~ 217 (358)
.|.++|+| ..+++.+...+.. +.+...+..+++|+||||| ||| ||++ |+++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GP--PGtGKT~l---akAi-------------- 226 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGP--PGTGKTML---VKAV-------------- 226 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESC--TTTTHHHH---HHHH--------------
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECC--CCCCHHHH---HHHH--------------
Confidence 56677777 2333444443333 3456667888999999999 999 9999 9999
Q ss_pred cCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 218 TGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
|.+.+.+|+.+.++++.++|+|+++.. |+.+ |..|+..+||||||||+|++
T Consensus 227 -A~~~~~~~~~v~~~~l~~~~~Ge~e~~-------------ir~l---------------F~~A~~~aP~IifiDEiD~i 277 (428)
T 4b4t_K 227 -ANSTKAAFIRVNGSEFVHKYLGEGPRM-------------VRDV---------------FRLARENAPSIIFIDEVDSI 277 (428)
T ss_dssp -HHHHTCEEEEEEGGGTCCSSCSHHHHH-------------HHHH---------------HHHHHHTCSEEEEEECTHHH
T ss_pred -HHHhCCCeEEEecchhhccccchhHHH-------------HHHH---------------HHHHHHcCCCeeechhhhhh
Confidence 889999999999888877777777666 5555 99999999999999999999
Q ss_pred hhhcCCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 298 CKARGTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 298 ~~~r~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
++.|...+. .+...+|++++||++|||+.+..+|+||||||+||.||||++||||||.++
T Consensus 278 ~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I 338 (428)
T 4b4t_K 278 ATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKI 338 (428)
T ss_dssp HCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEE
T ss_pred hccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEE
Confidence 999965433 344678999999999999999899999999999999999999999999763
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4e-33 Score=273.51 Aligned_cols=162 Identities=25% Similarity=0.304 Sum_probs=134.0
Q ss_pred cCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccc
Q psy3629 148 RGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVT 217 (358)
Q Consensus 148 ~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~ 217 (358)
.|.++|+| ..+++.+...+.+ +.++..+..+++|+||||| ||| ||++ |+++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGP--PGTGKTll---AkAi-------------- 235 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGP--PGTGKTLL---ARAC-------------- 235 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESC--TTSSHHHH---HHHH--------------
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECc--CCCCHHHH---HHHH--------------
Confidence 56677877 2333444444433 3345667788999999999 999 9999 9999
Q ss_pred cCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhh
Q psy3629 218 TGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~ 297 (358)
|.+.+.+|+.+.++++.++|+|+++.. ++.+ |..|+..+||||||||||++
T Consensus 236 -A~e~~~~f~~v~~s~l~~~~vGese~~-------------ir~l---------------F~~A~~~aP~IifiDEiDal 286 (434)
T 4b4t_M 236 -AAQTNATFLKLAAPQLVQMYIGEGAKL-------------VRDA---------------FALAKEKAPTIIFIDELDAI 286 (434)
T ss_dssp -HHHHTCEEEEEEGGGGCSSCSSHHHHH-------------HHHH---------------HHHHHHHCSEEEEEECTHHH
T ss_pred -HHHhCCCEEEEehhhhhhcccchHHHH-------------HHHH---------------HHHHHhcCCeEEeecchhhh
Confidence 999999999999888888888777666 5555 99999999999999999999
Q ss_pred hhhcCCCCCC-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 298 CKARGTAGGN-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 298 ~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
++.|...+.+ +....+++++||++|||+.+.++|+||||||+||.||||++||||||.++
T Consensus 287 ~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I 347 (434)
T 4b4t_M 287 GTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKI 347 (434)
T ss_dssp HCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEE
T ss_pred hhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEE
Confidence 9999664332 23457899999999999999899999999999999999999999999864
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-33 Score=271.21 Aligned_cols=163 Identities=23% Similarity=0.319 Sum_probs=134.5
Q ss_pred hcCcccCCC------chhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhccccccccccccc
Q psy3629 147 SRGILNWGT------PVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEV 216 (358)
Q Consensus 147 ~~~~~~~~d------~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~ 216 (358)
..|.++|+| ..+++.+...+.+ +.++..+..+++|+||||| ||| ||++ |+++
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGP--PGTGKTlL---AkAi------------- 263 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGP--PGTGKTLC---ARAV------------- 263 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSC--TTSSHHHH---HHHH-------------
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCC--CCCcHHHH---HHHH-------------
Confidence 357788888 2223333333322 3355667788999999999 999 9999 9999
Q ss_pred ccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 217 TTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
|.+.+.+|+.+.++++.++|+|+++.. ++.+ |..|+..+||||||||+|+
T Consensus 264 --A~e~~~~fi~vs~s~L~sk~vGesek~-------------ir~l---------------F~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 264 --ANRTDATFIRVIGSELVQKYVGEGARM-------------VREL---------------FEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp --HHHHTCEEEEEEGGGGCCCSSSHHHHH-------------HHHH---------------HHHHHHTCSEEEEEECCTT
T ss_pred --HhccCCCeEEEEhHHhhcccCCHHHHH-------------HHHH---------------HHHHHhcCCceEeeccccc
Confidence 999999999999888887777777666 5555 9999999999999999999
Q ss_pred hhhhcCCCCCC-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 297 ICKARGTAGGN-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 297 ~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++.|+..+++ .....+++++||++|||+....+|+||||||+|+.||+|++||||||.++
T Consensus 314 i~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I 375 (467)
T 4b4t_H 314 VGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKV 375 (467)
T ss_dssp TSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEE
T ss_pred ccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEE
Confidence 99999765433 33457899999999999999899999999999999999999999999864
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=1.7e-28 Score=256.36 Aligned_cols=153 Identities=27% Similarity=0.343 Sum_probs=130.3
Q ss_pred CCchhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccc
Q psy3629 154 GTPVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLA 229 (358)
Q Consensus 154 ~d~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (358)
++.++++.+.....+ +.++..+..+++|+||||| ||| ||.+ |+++ |.+.+.+++.+
T Consensus 210 ~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GP--PGTGKT~L---Arai---------------A~elg~~~~~v 269 (806)
T 3cf2_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP--PGTGKTLI---ARAV---------------ANETGAFFFLI 269 (806)
T ss_dssp CTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECC--TTSCHHHH---HHHH---------------HTTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECC--CCCCHHHH---HHHH---------------HHHhCCeEEEE
Confidence 334455555444433 3456667788999999999 999 9999 9999 99999999999
Q ss_pred cCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcc
Q psy3629 230 YSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTG 309 (358)
Q Consensus 230 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~ 309 (358)
.++++.++|+|+++.. ++.+ |+.|+.++||||||||||+|++.|+..++ +
T Consensus 270 ~~~~l~sk~~gese~~-------------lr~l---------------F~~A~~~~PsIIfIDEiDal~~~r~~~~~--~ 319 (806)
T 3cf2_A 270 NGPEIMSKLAGESESN-------------LRKA---------------FEEAEKNAPAIIFIDELDAIAPKREKTHG--E 319 (806)
T ss_dssp EHHHHHSSCTTHHHHH-------------HHHH---------------HHHHTTSCSEEEEEESGGGTCCTTTTCCC--T
T ss_pred EhHHhhcccchHHHHH-------------HHHH---------------HHHHHHcCCeEEEEehhcccccccCCCCC--h
Confidence 9888888777777766 6666 99999999999999999999999876543 3
Q ss_pred hhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 310 VHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 310 ~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
..++++++||++|||+....+|+||||||+|+.||+|++||||||..
T Consensus 320 ~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366 (806)
T ss_dssp THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEE
T ss_pred HHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceE
Confidence 77899999999999998888999999999999999999999999975
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-24 Score=210.34 Aligned_cols=113 Identities=36% Similarity=0.615 Sum_probs=104.6
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+|+||||||+|+.||||++||||||++|+|++|+.++|.+||+.|++++ .+..+.+++.||+.|+|||
T Consensus 279 lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 279 LDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM----NLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp HHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS----BCCSSCCHHHHHHHCCSCC
T ss_pred hhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC----CCCccCCHHHHHHHCCCCC
Confidence 689999999999999999999999999999999999999999999999999999887 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKP 133 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kp 133 (358)
||||+++|++|++.|+++ +...++++||..|+++ +.+
T Consensus 355 GADi~~l~~eA~~~Air~---------------~~~~vt~~Df~~Al~~-v~~ 391 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRE---------------RRIHVTQEDFELAVGK-VMN 391 (405)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCSBCCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHH-HhC
Confidence 999999999999999876 3557999999999987 544
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.8e-24 Score=209.16 Aligned_cols=116 Identities=38% Similarity=0.624 Sum_probs=107.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+.+.++|+||||||+||.||||++||||||++|+|++|+.++|.+||+.|++++ ....+.+++.||+.|+|||
T Consensus 312 ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----~~~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM----TTDDDINWQELARSTDEFN 387 (434)
T ss_dssp HTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS----CBCSCCCHHHHHHHCSSCC
T ss_pred hhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC----CCCCcCCHHHHHHhCCCCC
Confidence 689999999999999999999999999999999999999999999999999999987 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
||||+++|++|++.|+++ +...++.+||..|+++ ++|+..
T Consensus 388 GADi~~l~~eA~~~a~r~---------------~~~~i~~~Df~~Al~~-v~~~~~ 427 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIALRN---------------GQSSVKHEDFVEGISE-VQARKS 427 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------TCSSBCHHHHHHHHHS-CSSSCC
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHH-HhCCCC
Confidence 999999999999999876 3557999999999999 888753
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.2e-24 Score=208.45 Aligned_cols=114 Identities=32% Similarity=0.563 Sum_probs=105.0
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||++..++|+||+|||+||.||||++||||||++|+|++||.++|.+||+.|++++ .+..+.+++.||+.|+|||
T Consensus 313 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~----~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 313 LDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM----NLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp HHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS----CBCSCCCHHHHHHHCCSCC
T ss_pred hhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC----CCCCcCCHHHHHHhCCCCC
Confidence 578888999999999999999999999999999999999999999999999999887 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
||||+++|++|++.|+++ ....++.+||..|+++ +.|+
T Consensus 389 GADI~~l~~eA~~~Air~---------------~~~~It~eDf~~Al~r-v~~~ 426 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALRE---------------RRMQVTAEDFKQAKER-VMKN 426 (437)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCSCBCHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHHH-HhCC
Confidence 999999999999999876 3457999999999988 6554
No 13
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-23 Score=206.19 Aligned_cols=114 Identities=36% Similarity=0.626 Sum_probs=105.2
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+.+.++|+||+|||+||.||||++||||||++|+|++||.++|.+||+.|++++ ....+.+++.||+.|+|||
T Consensus 312 lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~----~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV----KKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp HHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS----CBCSCCCHHHHHHTCCSCC
T ss_pred hhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC----CCCcccCHHHHHHhCCCCC
Confidence 689999999999999999999999999999999999999999999999999999987 4567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
|+||+++|++|++.|+++ +...|+.+||..|+++ +.|+
T Consensus 388 GADi~~l~~eA~~~air~---------------~~~~i~~~d~~~Al~~-v~~~ 425 (437)
T 4b4t_L 388 GADIRNCATEAGFFAIRD---------------DRDHINPDDLMKAVRK-VAEV 425 (437)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHH-HHhc
Confidence 999999999999999876 3456999999999998 7665
No 14
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.9e-23 Score=202.60 Aligned_cols=113 Identities=35% Similarity=0.580 Sum_probs=104.1
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+...++|+||||||+|+.||||++||||||++|+|++|+.++|.+||+.|++++ ....+.+++.||+.|+|||
T Consensus 340 lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~----~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 340 LDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM----SVERGIRWELISRLCPNST 415 (467)
T ss_dssp HHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS----CBCSSCCHHHHHHHCCSCC
T ss_pred hhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC----CCCCCCCHHHHHHHCCCCC
Confidence 588999999999999999999999999999999999999999999999999999887 4667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKP 133 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kp 133 (358)
||||+++|++|++.|+++ +...++.+||..|+++ +.+
T Consensus 416 GADI~~l~~eAa~~Air~---------------~~~~it~~Df~~Al~k-V~~ 452 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAIRA---------------RRKVATEKDFLKAVDK-VIS 452 (467)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------TCSSBCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCccCHHHHHHHHHH-Hhc
Confidence 999999999999999887 3456899999999987 543
No 15
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=3.1e-23 Score=203.22 Aligned_cols=116 Identities=34% Similarity=0.508 Sum_probs=105.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEec-CCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEIS-LPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF 79 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~-~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~ 79 (358)
|||+.+..+|+||||||+|+.||||++||||||.+|+|| +|+.++|..||+.|++++ ....+.+++.||+.|+||
T Consensus 303 ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~----~l~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 303 MDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM----SLAPEADLDSLIIRNDSL 378 (428)
T ss_dssp HHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS----CBCTTCCHHHHHHHTTTC
T ss_pred hhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC----CCCcccCHHHHHHHCCCC
Confidence 689999999999999999999999999999999999996 899999999999999887 466788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCC
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAF 135 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~ 135 (358)
|||||+++|++|++.|+++ +...++++||.+|+.+.++++.
T Consensus 379 sgadi~~l~~eA~~~a~r~---------------~~~~i~~~d~~~A~~~~~~~~~ 419 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAVRK---------------NRYVILQSDLEEAYATQVKTDN 419 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHHHSCSCC
T ss_pred CHHHHHHHHHHHHHHHHHC---------------CCCCCCHHHHHHHHHHhhCccC
Confidence 9999999999999999876 3457999999999987566654
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.87 E-value=1.8e-23 Score=196.91 Aligned_cols=134 Identities=34% Similarity=0.467 Sum_probs=110.7
Q ss_pred ccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhc
Q psy3629 175 ESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSL 253 (358)
Q Consensus 175 ~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 253 (358)
+..+..++||+|| ||| ||.+ |+++ +...+.+++.+.++++.+.|+|.++
T Consensus 45 ~~~~~~~vLL~Gp--~GtGKT~l---a~al---------------a~~~~~~~i~v~~~~l~~~~~g~~~---------- 94 (301)
T 3cf0_A 45 GMTPSKGVLFYGP--PGCGKTLL---AKAI---------------ANECQANFISIKGPELLTMWFGESE---------- 94 (301)
T ss_dssp CCCCCSEEEEECS--SSSSHHHH---HHHH---------------HHHTTCEEEEECHHHHHHHHHTTCT----------
T ss_pred CCCCCceEEEECC--CCcCHHHH---HHHH---------------HHHhCCCEEEEEhHHHHhhhcCchH----------
Confidence 4456788999999 999 9999 9999 6666777888877666555555544
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC-CCcchhhHHHHHHHHccCCCCCCCCEE
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG-GNTGVHDTVVNQLLSKMDGVERLNNIL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~ 332 (358)
+.++.+|..|+...||||||||||.+++.|+... ..++..++++++||+.|||+....+|+
T Consensus 95 ------------------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 95 ------------------ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp ------------------THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred ------------------HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 4445559999999999999999999999886532 223456899999999999998778899
Q ss_pred EEEecCCccccchhcCCCCCCccc
Q psy3629 333 VIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 333 vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
||+|||+|+.||++++||||||..
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEE
T ss_pred EEEecCCccccChHHhcCCccceE
Confidence 999999999999999999999953
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.86 E-value=4.1e-23 Score=192.05 Aligned_cols=136 Identities=35% Similarity=0.503 Sum_probs=105.4
Q ss_pred cccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHh
Q psy3629 172 KDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAE 250 (358)
Q Consensus 172 ~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 250 (358)
+..+...+.|++|+|| ||| ||.+ ++++ +...+..++.+.+.++.+.+.|++
T Consensus 37 ~~~~l~~~~GvlL~Gp--~GtGKTtL---akal---------------a~~~~~~~i~i~g~~l~~~~~~~~-------- 88 (274)
T 2x8a_A 37 KALGLVTPAGVLLAGP--PGCGKTLL---AKAV---------------ANESGLNFISVKGPELLNMYVGES-------- 88 (274)
T ss_dssp HHTTCCCCSEEEEESS--TTSCHHHH---HHHH---------------HHHTTCEEEEEETTTTCSSTTHHH--------
T ss_pred HHcCCCCCCeEEEECC--CCCcHHHH---HHHH---------------HHHcCCCEEEEEcHHHHhhhhhHH--------
Confidence 3444556778999999 999 9999 9999 555555677777766655555544
Q ss_pred hhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCC
Q psy3629 251 LSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNN 330 (358)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~ 330 (358)
|+.++.+|+.|+...||++|+||+|.++..|+... .+...+++++++++|+|......
T Consensus 89 --------------------~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 89 --------------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp --------------------HHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTC
T ss_pred --------------------HHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCC
Confidence 44455559999999999999999999988775422 22456889999999999988888
Q ss_pred EEEEEecCCccccchhcCCCCCCcccc
Q psy3629 331 ILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
++++++||+|+.||+|++||||||..+
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i 173 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTL 173 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEE
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEE
Confidence 999999999999999999999999753
No 18
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=1.4e-23 Score=196.91 Aligned_cols=136 Identities=12% Similarity=0.014 Sum_probs=96.6
Q ss_pred ccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhh
Q psy3629 173 DTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAEL 251 (358)
Q Consensus 173 ~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 251 (358)
..+..++.++||+|| ||| ||.+ |+++ +...+.+++.+.++++.++|+|.++..
T Consensus 30 ~~~~~~p~~lLl~Gp--pGtGKT~l---a~ai---------------A~~l~~~~i~v~~~~l~~~~~g~~~~~------ 83 (293)
T 3t15_A 30 LPNIKVPLILGIWGG--KGQGKSFQ---CELV---------------FRKMGINPIMMSAGELESGNAGEPAKL------ 83 (293)
T ss_dssp CTTCCCCSEEEEEEC--TTSCHHHH---HHHH---------------HHHHTCCCEEEEHHHHHCC---HHHHH------
T ss_pred cCCCCCCeEEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEeHHHhhhccCchhHHH------
Confidence 344567889999999 999 9999 9999 777788888887766666666555444
Q ss_pred hccccccccccccCCCCchhHHHHHHhhcC----CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC-
Q psy3629 252 SLHQDIDVKPFFFNPKNTSEFLCTIILEAG----PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE- 326 (358)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a----~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~- 326 (358)
++++|..| +..+||||||||||.+++.+++.........++.+.||+.||+..
T Consensus 84 ----------------------i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~ 141 (293)
T 3t15_A 84 ----------------------IRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 141 (293)
T ss_dssp ----------------------HHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-
T ss_pred ----------------------HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccc
Confidence 44449888 788999999999999999765443333345678899999998553
Q ss_pred ----------CCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 327 ----------RLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 327 ----------~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
...+|+||+|||+++.||+|++||||||..
T Consensus 142 ~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 142 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp ----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred cccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 446799999999999999999999999974
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.7e-22 Score=190.68 Aligned_cols=129 Identities=26% Similarity=0.340 Sum_probs=107.6
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCC-ccccccccCcccccccccccHHHHHHHhhhc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGR-HYIFTLAYSPDVKRGFIGFSLLQRKWAELSL 253 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 253 (358)
..+++++||+|| ||| ||.+ |+++ +.+. +.+|+.+.++++.++|+|.++..
T Consensus 42 ~~~~~~iLL~Gp--pGtGKT~l---a~al---------------a~~~~~~~~~~i~~~~l~~~~~g~~~~~-------- 93 (322)
T 1xwi_A 42 RTPWRGILLFGP--PGTGKSYL---AKAV---------------ATEANNSTFFSISSSDLVSKWLGESEKL-------- 93 (322)
T ss_dssp CCCCSEEEEESS--SSSCHHHH---HHHH---------------HHHTTSCEEEEEECCSSCCSSCCSCHHH--------
T ss_pred CCCCceEEEECC--CCccHHHH---HHHH---------------HHHcCCCcEEEEEhHHHHhhhhhHHHHH--------
Confidence 346789999999 999 9999 9999 5555 66788888777766666665554
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEE
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNIL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~ 332 (358)
++.+|..|+..+||||||||||.+++.|+... ++...+++++||++|||+.. ..+|+
T Consensus 94 --------------------~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 94 --------------------VKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp --------------------HHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred --------------------HHHHHHHHHhcCCcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEE
Confidence 44459999999999999999999999986543 34678999999999999863 56899
Q ss_pred EEEecCCccccchhcCCCCCCccc
Q psy3629 333 VIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 333 vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
||+|||+|+.||+|++| |||..
T Consensus 152 vI~atn~~~~ld~al~r--Rf~~~ 173 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRR--RFEKR 173 (322)
T ss_dssp EEEEESCTTTSCHHHHH--TCCEE
T ss_pred EEEecCCcccCCHHHHh--hcCeE
Confidence 99999999999999999 99864
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=2e-22 Score=200.46 Aligned_cols=136 Identities=30% Similarity=0.448 Sum_probs=108.3
Q ss_pred ccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhh
Q psy3629 173 DTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAEL 251 (358)
Q Consensus 173 ~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 251 (358)
..+...+.++||+|| ||| ||.+ |+++ +.+.+.+|+.+.++++...|+|.+...
T Consensus 43 ~~g~~~p~gvLL~Gp--pGtGKT~L---arai---------------a~~~~~~f~~is~~~~~~~~~g~~~~~------ 96 (476)
T 2ce7_A 43 RIGARMPKGILLVGP--PGTGKTLL---ARAV---------------AGEANVPFFHISGSDFVELFVGVGAAR------ 96 (476)
T ss_dssp TTTCCCCSEEEEECC--TTSSHHHH---HHHH---------------HHHHTCCEEEEEGGGTTTCCTTHHHHH------
T ss_pred hcCCCCCCeEEEECC--CCCCHHHH---HHHH---------------HHHcCCCeeeCCHHHHHHHHhcccHHH------
Confidence 334456788999999 999 9999 9999 666777888888777766666654443
Q ss_pred hccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCCC
Q psy3629 252 SLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNN 330 (358)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~ 330 (358)
++.+|+.|+..+||||||||||.+...|+.. ++.+....+++++||++|||+....+
T Consensus 97 ----------------------~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 97 ----------------------VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ----------------------HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ----------------------HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 4444999999999999999999999988542 22233456899999999999987778
Q ss_pred EEEEEecCCccccchhcCCCCCCccc
Q psy3629 331 ILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+||+|||+|+.||+|++||||||..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~ 180 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKK 180 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred EEEEEecCChhhhchhhcccCcceeE
Confidence 99999999999999999999999964
No 21
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.81 E-value=1.4e-21 Score=185.51 Aligned_cols=129 Identities=26% Similarity=0.340 Sum_probs=104.2
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
..++.++||+|| ||| ||.+ |+++ +...+.+++.+.++++.+.|+|.++.
T Consensus 48 ~~~~~~vLl~Gp--pGtGKT~l---a~ai---------------a~~~~~~~~~v~~~~l~~~~~g~~~~---------- 97 (322)
T 3eie_A 48 RKPTSGILLYGP--PGTGKSYL---AKAV---------------ATEANSTFFSVSSSDLVSKWMGESEK---------- 97 (322)
T ss_dssp CCCCCEEEEECS--SSSCHHHH---HHHH---------------HHHHTCEEEEEEHHHHHTTTGGGHHH----------
T ss_pred CCCCCeEEEECC--CCCcHHHH---HHHH---------------HHHHCCCEEEEchHHHhhcccchHHH----------
Confidence 356789999999 999 9999 9999 66677788888776666666655544
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC-CCCCEEE
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE-RLNNILV 333 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~v 333 (358)
.++.+|..|+..+||||||||||.+.+.|+... +....+++++||+.|+++. ...+|+|
T Consensus 98 ------------------~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~v 157 (322)
T 3eie_A 98 ------------------LVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLV 157 (322)
T ss_dssp ------------------HHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEE
T ss_pred ------------------HHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCCceEE
Confidence 445559999999999999999999999885443 3367899999999999984 5568999
Q ss_pred EEecCCccccchhcCCCCCCccc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+|||+|+.||+|++| |||..
T Consensus 158 i~atn~~~~ld~al~~--Rf~~~ 178 (322)
T 3eie_A 158 LGATNIPWQLDSAIRR--RFERR 178 (322)
T ss_dssp EEEESCGGGSCHHHHH--HCCEE
T ss_pred EEecCChhhCCHHHHc--ccCeE
Confidence 9999999999999999 99864
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=7e-21 Score=188.59 Aligned_cols=128 Identities=27% Similarity=0.357 Sum_probs=100.6
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCC-ccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGR-HYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
.++.++||+|| ||| ||.+ |+++ +... +.+|+.+.++++.+.|+|.++.
T Consensus 165 ~~~~~vLL~Gp--pGtGKT~l---A~ai---------------a~~~~~~~~~~v~~~~l~~~~~g~~~~---------- 214 (444)
T 2zan_A 165 TPWRGILLFGP--PGTGKSYL---AKAV---------------ATEANNSTFFSISSSDLVSKWLGESEK---------- 214 (444)
T ss_dssp CCCSEEEEECS--TTSSHHHH---HHHH---------------HHHCCSSEEEEECCC---------CCC----------
T ss_pred CCCceEEEECC--CCCCHHHH---HHHH---------------HHHcCCCCEEEEeHHHHHhhhcchHHH----------
Confidence 46789999999 999 9999 9999 5555 6678888877776666655544
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEEE
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNILV 333 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~v 333 (358)
.++.+|..|+..+||||||||||.+++.|.... ++...+++++||+.|+|+.. ..+|+|
T Consensus 215 ------------------~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 215 ------------------LVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp ------------------THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred ------------------HHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 445559999999999999999999999886543 34678999999999999863 568999
Q ss_pred EEecCCccccchhcCCCCCCccc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+|||+|+.||++++| |||..
T Consensus 275 I~atn~~~~ld~al~r--Rf~~~ 295 (444)
T 2zan_A 275 LGATNIPWVLDSAIRR--RFEKR 295 (444)
T ss_dssp EEEESCGGGSCHHHHT--TCCEE
T ss_pred EecCCCccccCHHHHh--hcceE
Confidence 9999999999999999 99854
No 23
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.80 E-value=9.2e-20 Score=169.39 Aligned_cols=130 Identities=32% Similarity=0.541 Sum_probs=104.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc--CC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT--KN 78 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t--~g 78 (358)
|||.+.+..++++++||+|+.||+|++||||||+.|++++|+.++|.+||+.+++... ......+.+++.+|..| +|
T Consensus 138 Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~-~~~~~~~~~~~~la~~~~~~g 216 (274)
T 2x8a_A 138 MDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT-KPPLDADVNLEAIAGDLRCDC 216 (274)
T ss_dssp HHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB-TTBBCTTCCHHHHHTCSGGGS
T ss_pred hhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc-CCCCccccCHHHHHHhhccCC
Confidence 4678888899999999999999999999999999999999999999999999986421 11345678999999975 59
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 79 FSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 79 ~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
|||+||.++|++|++.++++.+..... ....+...++.+||.+|+.+ ++|+..
T Consensus 217 ~sgadl~~l~~~a~~~a~~~~~~~~~~----~~~~~~~~i~~~df~~al~~-~~ps~~ 269 (274)
T 2x8a_A 217 YTGADLSALVREASICALRQEMARQKS----GNEKGELKVSHKHFEEAFKK-VRSSIS 269 (274)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC---------------CCBCHHHHHHHHTT-CCCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhccc----cccccCCeecHHHHHHHHHH-hcCCCC
Confidence 999999999999999999876543221 11123457999999999999 999864
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=3.4e-20 Score=170.05 Aligned_cols=134 Identities=32% Similarity=0.428 Sum_probs=106.1
Q ss_pred ccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhc
Q psy3629 175 ESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSL 253 (358)
Q Consensus 175 ~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 253 (358)
+...+.+++|+|| ||| ||.+ |+++ +...+.+++.+.++++...+.|.+..
T Consensus 41 ~~~~~~~vll~G~--~GtGKT~l---a~~l---------------a~~~~~~~~~i~~~~~~~~~~~~~~~--------- 91 (257)
T 1lv7_A 41 GGKIPKGVLMVGP--PGTGKTLL---AKAI---------------AGEAKVPFFTISGSDFVEMFVGVGAS--------- 91 (257)
T ss_dssp --CCCCEEEEECC--TTSCHHHH---HHHH---------------HHHHTCCEEEECSCSSTTSCCCCCHH---------
T ss_pred CCCCCCeEEEECc--CCCCHHHH---HHHH---------------HHHcCCCEEEEeHHHHHHHhhhhhHH---------
Confidence 3345778999999 999 9999 9999 55555667777777665555555444
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC-CCcchhhHHHHHHHHccCCCCCCCCEE
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG-GNTGVHDTVVNQLLSKMDGVERLNNIL 332 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~-~~~~~~~~~~~~lL~~ld~~~~~~~v~ 332 (358)
.++.+|+.|+...||++||||+|.+...|.... .......++++++|++|+++....+++
T Consensus 92 -------------------~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 152 (257)
T 1lv7_A 92 -------------------RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 152 (257)
T ss_dssp -------------------HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEE
T ss_pred -------------------HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEE
Confidence 444559999999999999999999998875432 122234578999999999998778899
Q ss_pred EEEecCCccccchhcCCCCCCccc
Q psy3629 333 VIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 333 vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
||+|||+|+.||++++||||||..
T Consensus 153 vI~~tn~~~~l~~~l~r~~rf~~~ 176 (257)
T 1lv7_A 153 VIAATNRPDVLDPALLRPGRFDRQ 176 (257)
T ss_dssp EEEEESCTTTSCGGGGSTTSSCEE
T ss_pred EEEeeCCchhCCHHHcCCCcCCeE
Confidence 999999999999999999999964
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.80 E-value=4.2e-20 Score=184.68 Aligned_cols=136 Identities=33% Similarity=0.459 Sum_probs=109.0
Q ss_pred cccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhh
Q psy3629 174 TESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELS 252 (358)
Q Consensus 174 ~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 252 (358)
.+...+.+++|+|| ||| ||.+ ++++ +...+.+++.+.++++...++|....
T Consensus 59 lg~~ip~GvLL~Gp--pGtGKTtL---araI---------------a~~~~~~~i~i~g~~~~~~~~g~~~~-------- 110 (499)
T 2dhr_A 59 MGARIPKGVLLVGP--PGVGKTHL---ARAV---------------AGEARVPFITASGSDFVEMFVGVGAA-------- 110 (499)
T ss_dssp TSCCCCSEEEEECS--SSSSHHHH---HHHH---------------HHHTTCCEEEEEGGGGTSSCTTHHHH--------
T ss_pred ccCCCCceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEehhHHHHhhhhhHHH--------
Confidence 34445678999999 999 9999 9999 65566778888777765555555443
Q ss_pred ccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCCCE
Q psy3629 253 LHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNI 331 (358)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~v 331 (358)
.++.+|+.|+...|||+||||||.+...|+.. +..+....+.+++||++|||......+
T Consensus 111 --------------------~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~v 170 (499)
T 2dhr_A 111 --------------------RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 170 (499)
T ss_dssp --------------------HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCC
T ss_pred --------------------HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccE
Confidence 34455999999999999999999999887532 112224467899999999999887789
Q ss_pred EEEEecCCccccchhcCCCCCCcccc
Q psy3629 332 LVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 332 ~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++++||+|+.||++++||||||..+
T Consensus 171 iviAatn~p~~LD~aLlr~gRfdr~i 196 (499)
T 2dhr_A 171 VVMAATNRPDILDPALLRPGRFDRQI 196 (499)
T ss_dssp EEEECCSCGGGSCTTTSSTTSSCCEE
T ss_pred EEEEecCChhhcCcccccccccceEE
Confidence 99999999999999999999999753
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.80 E-value=4.6e-21 Score=184.61 Aligned_cols=129 Identities=27% Similarity=0.355 Sum_probs=100.1
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcc
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLH 254 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~ 254 (358)
..++.++||+|| ||| ||.+ |+++ +...+.+++.+.++++.++|+|.+
T Consensus 81 ~~~~~~iLL~Gp--pGtGKT~l---a~al---------------a~~~~~~~~~v~~~~l~~~~~g~~------------ 128 (355)
T 2qp9_X 81 RKPTSGILLYGP--PGTGKSYL---AKAV---------------ATEANSTFFSVSSSDLVSKWMGES------------ 128 (355)
T ss_dssp CCCCCCEEEECS--TTSCHHHH---HHHH---------------HHHHTCEEEEEEHHHHHSCC---C------------
T ss_pred CCCCceEEEECC--CCCcHHHH---HHHH---------------HHHhCCCEEEeeHHHHhhhhcchH------------
Confidence 345788999999 999 9999 9999 666677788777666655555544
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEEE
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNILV 333 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~v 333 (358)
|+.++.+|..|+..+||||||||||.+.+.|+... +....+++++||+.|+++.. ..+|+|
T Consensus 129 ----------------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 129 ----------------EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp ----------------HHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred ----------------HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--chHHHHHHHHHHHHhhcccccCCCeEE
Confidence 44555559999999999999999999999886543 34778999999999999854 468999
Q ss_pred EEecCCccccchhcCCCCCCccc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+|||+|+.||++++| |||..
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~ 211 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERR 211 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEE
T ss_pred EeecCCcccCCHHHHc--ccCEE
Confidence 9999999999999999 99864
No 27
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.80 E-value=9.3e-21 Score=189.49 Aligned_cols=134 Identities=29% Similarity=0.393 Sum_probs=113.6
Q ss_pred ccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhh
Q psy3629 173 DTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAEL 251 (358)
Q Consensus 173 ~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 251 (358)
..+..++.++||+|| ||| ||.+ |+++ +...+.+|+.++++++.+.|.|.++..
T Consensus 232 ~~g~~~~~~vLL~Gp--pGtGKT~l---Arai---------------a~~~~~~fv~vn~~~l~~~~~g~~~~~------ 285 (489)
T 3hu3_A 232 AIGVKPPRGILLYGP--PGTGKTLI---ARAV---------------ANETGAFFFLINGPEIMSKLAGESESN------ 285 (489)
T ss_dssp HHTCCCCCEEEEECS--TTSSHHHH---HHHH---------------HHHCSSEEEEEEHHHHHTSCTTHHHHH------
T ss_pred hcCCCCCCcEEEECc--CCCCHHHH---HHHH---------------HHHhCCCEEEEEchHhhhhhcchhHHH------
Confidence 334567789999999 999 9999 9999 677788888888777766666665555
Q ss_pred hccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCE
Q psy3629 252 SLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNI 331 (358)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 331 (358)
++.+ |..|+..+||||||||||.+++.|....+ ....+++++||+.|++.....+|
T Consensus 286 -------~~~~---------------f~~A~~~~p~iLfLDEId~l~~~~~~~~~--~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 286 -------LRKA---------------FEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp -------HHHH---------------HHHHHHTCSEEEEEESHHHHCBCTTSCCC--HHHHHHHHHHHHHHHHSCTTSCE
T ss_pred -------HHHH---------------HHHHHhcCCcEEEecchhhhccccccccc--hHHHHHHHHHHHHhhccccCCce
Confidence 4445 99999999999999999999998764432 36789999999999999888899
Q ss_pred EEEEecCCccccchhcCCCCCCccc
Q psy3629 332 LVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 332 ~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
+||+|||+|+.||++++|+|||+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEE
T ss_pred EEEEecCCccccCHHHhCCCcCceE
Confidence 9999999999999999999999863
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.79 E-value=3.7e-20 Score=169.50 Aligned_cols=135 Identities=27% Similarity=0.356 Sum_probs=97.3
Q ss_pred cccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhh
Q psy3629 174 TESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELS 252 (358)
Q Consensus 174 ~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 252 (358)
.+...+.++||+|| ||| ||.+ |+++ +...+.+++.+.++++...+.|.+..
T Consensus 34 ~g~~~~~~vll~G~--~GtGKT~l---a~~l---------------a~~~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (262)
T 2qz4_A 34 LGAKVPKGALLLGP--PGCGKTLL---AKAV---------------ATEAQVPFLAMAGAEFVEVIGGLGAA-------- 85 (262)
T ss_dssp --CCCCCEEEEESC--TTSSHHHH---HHHH---------------HHHHTCCEEEEETTTTSSSSTTHHHH--------
T ss_pred cCCCCCceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEechHHHHhhccChhHH--------
Confidence 34456788999999 999 9999 9999 55566777887777765555555443
Q ss_pred ccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC--CcchhhHHHHHHHHccCCCCCCCC
Q psy3629 253 LHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG--NTGVHDTVVNQLLSKMDGVERLNN 330 (358)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~--~~~~~~~~~~~lL~~ld~~~~~~~ 330 (358)
.++.+|+.|+...|+||||||+|.+...|+.... .+......+++||.+++++....+
T Consensus 86 --------------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 86 --------------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp --------------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred --------------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 3444599999999999999999999988754321 122346789999999999877778
Q ss_pred EEEEEecCCccccchhcCCCCCCccc
Q psy3629 331 ILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++||+|||+++.||++++||||||..
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~ 171 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRH 171 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEE
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeE
Confidence 99999999999999999999999864
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.79 E-value=4.1e-20 Score=171.71 Aligned_cols=135 Identities=30% Similarity=0.388 Sum_probs=109.3
Q ss_pred cccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhh
Q psy3629 174 TESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELS 252 (358)
Q Consensus 174 ~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 252 (358)
.+..+..++||+|| ||| ||.+ |+++ +...+.+++.+.+.++.+.+.|.+...
T Consensus 46 ~~~~~~~~~ll~G~--~GtGKT~l---a~~l---------------a~~~~~~~~~v~~~~~~~~~~~~~~~~------- 98 (285)
T 3h4m_A 46 VGIEPPKGILLYGP--PGTGKTLL---AKAV---------------ATETNATFIRVVGSELVKKFIGEGASL------- 98 (285)
T ss_dssp HCCCCCSEEEEESS--SSSSHHHH---HHHH---------------HHHTTCEEEEEEGGGGCCCSTTHHHHH-------
T ss_pred cCCCCCCeEEEECC--CCCcHHHH---HHHH---------------HHHhCCCEEEEehHHHHHhccchHHHH-------
Confidence 34456788999999 999 9999 9999 666677788777666666666555444
Q ss_pred ccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCC-cchhhHHHHHHHHccCCCCCCCCE
Q psy3629 253 LHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGN-TGVHDTVVNQLLSKMDGVERLNNI 331 (358)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v 331 (358)
++.+|..++...|+||||||+|.+++.|...... .....+.+.++|.+++++....++
T Consensus 99 ---------------------~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 157 (285)
T 3h4m_A 99 ---------------------VKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDV 157 (285)
T ss_dssp ---------------------HHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSE
T ss_pred ---------------------HHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCE
Confidence 4445999999999999999999999887654222 224467888999999999887899
Q ss_pred EEEEecCCccccchhcCCCCCCccc
Q psy3629 332 LVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 332 ~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
+||+|||+|+.||++++|+|||+..
T Consensus 158 ~vI~ttn~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 158 KIIGATNRPDILDPAILRPGRFDRI 182 (285)
T ss_dssp EEEEECSCGGGBCHHHHSTTSEEEE
T ss_pred EEEEeCCCchhcCHHHcCCCcCCeE
Confidence 9999999999999999999999853
No 30
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.75 E-value=1.2e-19 Score=167.16 Aligned_cols=134 Identities=31% Similarity=0.446 Sum_probs=104.6
Q ss_pred ccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhc
Q psy3629 175 ESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSL 253 (358)
Q Consensus 175 ~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 253 (358)
+...+.++||+|| ||| ||.+ |+++ +...+.+++.+.++.+...+.|.+...
T Consensus 40 ~~~~~~~vll~G~--~GtGKT~l---a~~l---------------a~~~~~~~~~v~~~~~~~~~~~~~~~~-------- 91 (268)
T 2r62_A 40 GAKIPKGVLLVGP--PGTGKTLL---AKAV---------------AGEAHVPFFSMGGSSFIEMFVGLGASR-------- 91 (268)
T ss_dssp SCCCCSCCCCBCS--SCSSHHHH---HHHH---------------HHHHTCCCCCCCSCTTTTSCSSSCSSS--------
T ss_pred CCCCCceEEEECC--CCCcHHHH---HHHH---------------HHHhCCCEEEechHHHHHhhcchHHHH--------
Confidence 3445678999999 999 9999 9999 555666788888888877777776555
Q ss_pred cccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC--CcchhhHHHHHHHHccCCCCCC-CC
Q psy3629 254 HQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG--NTGVHDTVVNQLLSKMDGVERL-NN 330 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~--~~~~~~~~~~~lL~~ld~~~~~-~~ 330 (358)
++.+ |+.|+...|+||||||+|.+.+.|...+. .+....+++++||..|++.... .+
T Consensus 92 -----~~~~---------------~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (268)
T 2r62_A 92 -----VRDL---------------FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP 151 (268)
T ss_dssp -----SSTT---------------HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSC
T ss_pred -----HHHH---------------HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCC
Confidence 6677 99999889999999999999988743221 1223356788999999998643 45
Q ss_pred EEEEEecCCccccchhcCCCCCCccc
Q psy3629 331 ILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 331 v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+||+|||+++.||++++|+|||+..
T Consensus 152 v~vi~ttn~~~~ld~~l~r~~Rf~~~ 177 (268)
T 2r62_A 152 VIVLAATNRPEILDPALMRPGRFDRQ 177 (268)
T ss_dssp CEEEECBSCCTTSCGGGGSSSSSCCC
T ss_pred EEEEEecCCchhcCHhHcCCCCCCeE
Confidence 99999999999999999999999864
No 31
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=3e-17 Score=154.31 Aligned_cols=138 Identities=36% Similarity=0.552 Sum_probs=109.8
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+|+||+|||+|+.||++++|+|||+..|++++|+.++|.+||+.+++..+ ...+.+++.++..|+|||
T Consensus 146 l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~----~~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp HHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BCSSCCHHHHHHTCSSCC
T ss_pred hhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC----CCccchHHHHHHHcCCCC
Confidence 3566667789999999999999999999999999999999999999999999998763 456788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccc---------Ch-hhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHH
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEV---------DP-QALEKLCITRADFLHALETDIKPAFGSSDESLEHF 145 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~---------~~-~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~ 145 (358)
|+||+++|+.|++.++++.+........ .. .......++.+||..|++. ++|+.. ..++..|
T Consensus 222 g~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~-~~~s~~--~~~~~~~ 293 (301)
T 3cf0_A 222 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRF-ARRSVS--DNDIRKY 293 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTT-CCCSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHH-cCCCCC--HHHHHHH
Confidence 9999999999999999887654221000 00 0012257999999999999 999863 3344443
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.72 E-value=1e-18 Score=168.31 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=100.6
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.++.++||+|| ||| ||.+ |+++ +...+.+++.+.++++.+.|.|.++
T Consensus 115 ~~~~~vLl~Gp--pGtGKT~l---a~ai---------------a~~~~~~~~~i~~~~l~~~~~g~~~------------ 162 (357)
T 3d8b_A 115 GPPKGILLFGP--PGTGKTLI---GKCI---------------ASQSGATFFSISASSLTSKWVGEGE------------ 162 (357)
T ss_dssp SCCSEEEEESS--TTSSHHHH---HHHH---------------HHHTTCEEEEEEGGGGCCSSTTHHH------------
T ss_pred CCCceEEEECC--CCCCHHHH---HHHH---------------HHHcCCeEEEEehHHhhccccchHH------------
Confidence 45788999999 999 9999 9999 6667778888877777666655544
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC--CCCEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER--LNNILV 333 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~--~~~v~v 333 (358)
+.++.+|..|+...|+||||||||.+++.|.... +....+++++||..|+|... ..+|+|
T Consensus 163 ----------------~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~~v~v 224 (357)
T 3d8b_A 163 ----------------KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQLDGATTSSEDRILV 224 (357)
T ss_dssp ----------------HHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEE
T ss_pred ----------------HHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHHHhcccccCCCCEEE
Confidence 4445559999999999999999999999875433 23678999999999999753 457999
Q ss_pred EEecCCccccchhcCCCCCCccc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+|||+|+.||++++| ||+..
T Consensus 225 I~atn~~~~l~~~l~~--Rf~~~ 245 (357)
T 3d8b_A 225 VGATNRPQEIDEAARR--RLVKR 245 (357)
T ss_dssp EEEESCGGGBCHHHHT--TCCEE
T ss_pred EEecCChhhCCHHHHh--hCceE
Confidence 9999999999999999 99853
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=154.46 Aligned_cols=137 Identities=27% Similarity=0.439 Sum_probs=109.8
Q ss_pred CCcc-CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 2 DGVE-RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 2 Dg~~-~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||+. ...+|+||+|||+|+.||++++| ||+..+++++|+.++|.+||+.++...+ ....+.+++.||+.|+|||
T Consensus 141 d~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~---~~l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 141 QGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ---NSLTEADFRELGRKTDGYS 215 (322)
T ss_dssp HCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC---BCCCHHHHHHHHHTCTTCC
T ss_pred hcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHcCCCC
Confidence 5554 35789999999999999999999 9999999999999999999999998763 2236789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc----------------------------------ccChhhhhhhccCHHHHHHh
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKV----------------------------------EVDPQALEKLCITRADFLHA 126 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~----------------------------------~~~~~~~~~~~v~~~Df~~a 126 (358)
|+||+++|++|++.++++........ .++.+.....+|+.+||..|
T Consensus 216 gadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a 295 (322)
T 1xwi_A 216 GADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRS 295 (322)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHH
Confidence 99999999999999999977542100 01112223357999999999
Q ss_pred hhcCccCCCCCChhhhHHHh
Q psy3629 127 LETDIKPAFGSSDESLEHFL 146 (358)
Q Consensus 127 l~~~~kps~~~s~~~l~~~~ 146 (358)
++. ++|+. +.+++..|.
T Consensus 296 l~~-~~ps~--~~~~~~~~~ 312 (322)
T 1xwi_A 296 LSN-TKPTV--NEHDLLKLK 312 (322)
T ss_dssp HHT-CCCSC--CHHHHHHHH
T ss_pred HHh-CCCCC--CHHHHHHHH
Confidence 999 99996 344444443
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.72 E-value=3.4e-19 Score=177.02 Aligned_cols=132 Identities=11% Similarity=0.014 Sum_probs=93.6
Q ss_pred cccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCc--cccccccCcccccccccccHHHHHHHhhh
Q psy3629 176 SSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRH--YIFTLAYSPDVKRGFIGFSLLQRKWAELS 252 (358)
Q Consensus 176 ~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 252 (358)
..++.++||+|| ||| ||.+ |+++ +...+ .+|+.+.++++.++++|++
T Consensus 60 ~~~~~~iLl~Gp--pGtGKT~l---a~al---------------a~~l~~~~~~~~~~~~~~~~~~~~~~---------- 109 (456)
T 2c9o_A 60 KMAGRAVLLAGP--PGTGKTAL---ALAI---------------AQELGSKVPFCPMVGSEVYSTEIKKT---------- 109 (456)
T ss_dssp CCTTCEEEEECC--TTSSHHHH---HHHH---------------HHHHCTTSCEEEEEGGGGCCSSSCHH----------
T ss_pred CCCCCeEEEECC--CcCCHHHH---HHHH---------------HHHhCCCceEEEEeHHHHHHHhhhhh----------
Confidence 345688999999 999 9999 9998 44444 6777777666655555554
Q ss_pred ccccccccccccCCCCchhHHHHHHhhcC---CCCCceEEEEccchhhhhhcCCCCCC--cchhh---------------
Q psy3629 253 LHQDIDVKPFFFNPKNTSEFLCTIILEAG---PNSGLHIIIFDEIDAICKARGTAGGN--TGVHD--------------- 312 (358)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~e~~~~~~f~~a---~~~~p~iif~DeiD~~~~~r~~~~~~--~~~~~--------------- 312 (358)
|+ ++++|+.| +..+||||||||+|++++.|+....+ .....
T Consensus 110 ------------------~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 170 (456)
T 2c9o_A 110 ------------------EV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQL 170 (456)
T ss_dssp ------------------HH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEE
T ss_pred ------------------HH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhH
Confidence 44 45559999 89999999999999999998654211 11112
Q ss_pred HHHHHHHHccC--CCCCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 313 TVVNQLLSKMD--GVERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 313 ~~~~~lL~~ld--~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++.++++..|+ ++...+.|+|++|||+|+.+|+|++||||||..
T Consensus 171 ~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~ 216 (456)
T 2c9o_A 171 KLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLE 216 (456)
T ss_dssp EECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCS
T ss_pred hhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcc
Confidence 23344555654 455555577779999999999999999999983
No 35
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.71 E-value=2.9e-18 Score=156.85 Aligned_cols=132 Identities=33% Similarity=0.465 Sum_probs=97.1
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
..+.+++|+|| ||+ ||.+ ++++ +...+..++.+.+.++...+.
T Consensus 47 ~~~~g~ll~G~--~G~GKTtl---~~~i---------------~~~~~~~~i~~~~~~~~~~~~---------------- 90 (254)
T 1ixz_A 47 RIPKGVLLVGP--PGVGKTHL---ARAV---------------AGEARVPFITASGSDFVEMFV---------------- 90 (254)
T ss_dssp CCCSEEEEECC--TTSSHHHH---HHHH---------------HHHTTCCEEEEEHHHHHHSCT----------------
T ss_pred CCCCeEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEeeHHHHHHHHh----------------
Confidence 34567999999 999 9999 8888 433334455544433322222
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
+..++.+..+|+.++...|+++|+||+|.+...|... +.......+++++++.+|+|......++++
T Consensus 91 ------------~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 91 ------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp ------------THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEE
T ss_pred ------------hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 3344556667999998899999999999998876532 112224467899999999999887789999
Q ss_pred EecCCccccchhcCCCCCCccc
Q psy3629 335 GMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++||+|+.||++++|+||||..
T Consensus 159 a~t~~p~~ld~~l~r~~rf~~~ 180 (254)
T 1ixz_A 159 AATNRPDILDPALLRPGRFDRQ 180 (254)
T ss_dssp EEESCGGGSCGGGGSTTSSCEE
T ss_pred EccCCchhCCHHHcCCCcCCeE
Confidence 9999999999999999999975
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.70 E-value=3.2e-18 Score=166.53 Aligned_cols=126 Identities=24% Similarity=0.333 Sum_probs=96.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
+..++||+|| ||| ||.+ |+++ +...+.+|+.+.+..+.+.|+|.++..
T Consensus 147 ~~~~vLL~Gp--pGtGKT~l---a~ai---------------a~~~~~~~~~v~~~~l~~~~~g~~~~~----------- 195 (389)
T 3vfd_A 147 PARGLLLFGP--PGNGKTML---AKAV---------------AAESNATFFNISAASLTSKYVGEGEKL----------- 195 (389)
T ss_dssp CCSEEEEESS--TTSCHHHH---HHHH---------------HHHTTCEEEEECSCCC-------CHHH-----------
T ss_pred CCceEEEECC--CCCCHHHH---HHHH---------------HHhhcCcEEEeeHHHhhccccchHHHH-----------
Confidence 4678999999 999 9999 9999 777888899998888877777766655
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC--CCCEEEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER--LNNILVI 334 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~--~~~v~vi 334 (358)
++.+ |..|+...|+||||||||.++..|.... .....+++++||..|+|... ..+|+||
T Consensus 196 --~~~~---------------~~~a~~~~~~il~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 196 --VRAL---------------FAVARELQPSIIFIDQVDSLLCERREGE--HDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp --HHHH---------------HHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred --HHHH---------------HHHHHhcCCeEEEEECchhhcccCCCcc--chHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 4445 9999999999999999999998875432 23578999999999998864 4579999
Q ss_pred EecCCccccchhcCCCCCCcc
Q psy3629 335 GMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr~GRfd~ 355 (358)
+|||+++.||++++| ||+.
T Consensus 257 ~atn~~~~l~~~l~~--R~~~ 275 (389)
T 3vfd_A 257 GATNRPQELDEAVLR--RFIK 275 (389)
T ss_dssp EEESCGGGCCHHHHT--TCCE
T ss_pred EecCCchhcCHHHHc--Ccce
Confidence 999999999999999 9984
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.69 E-value=3.7e-18 Score=159.54 Aligned_cols=127 Identities=23% Similarity=0.309 Sum_probs=99.8
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
+..++||+|| ||| ||.+ |+++ +...+.+++.+.++++.+.+.|.++
T Consensus 53 ~~~~vll~Gp--~GtGKT~l---a~~l---------------a~~~~~~~~~i~~~~l~~~~~~~~~------------- 99 (297)
T 3b9p_A 53 PAKGLLLFGP--PGNGKTLL---ARAV---------------ATECSATFLNISAASLTSKYVGDGE------------- 99 (297)
T ss_dssp CCSEEEEESS--SSSCHHHH---HHHH---------------HHHTTCEEEEEESTTTSSSSCSCHH-------------
T ss_pred CCCeEEEECc--CCCCHHHH---HHHH---------------HHHhCCCeEEeeHHHHhhcccchHH-------------
Confidence 4678999999 999 9999 9999 6666777888777776655555544
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCC---CCEEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERL---NNILV 333 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~---~~v~v 333 (358)
+.++.+|..|+...|+||||||+|.+...|.... .....++.++||.+++++... .+++|
T Consensus 100 ---------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 100 ---------------KLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp ---------------HHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred ---------------HHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 4445559999999999999999999998875433 225678899999999988643 57999
Q ss_pred EEecCCccccchhcCCCCCCccc
Q psy3629 334 IGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
|+|||+|+.||++++| ||+..
T Consensus 163 i~~tn~~~~l~~~l~~--R~~~~ 183 (297)
T 3b9p_A 163 LAATNRPQELDEAALR--RFTKR 183 (297)
T ss_dssp EEEESCGGGBCHHHHH--HCCEE
T ss_pred EeecCChhhCCHHHHh--hCCeE
Confidence 9999999999999999 99853
No 38
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.68 E-value=1.6e-16 Score=167.06 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=65.0
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccccc-CchhhHHHHHHhc---
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKL-ADDVNLKELAALT--- 76 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~-~~~~~l~~la~~t--- 76 (358)
..+.+.+|++||..+ .+|+++.| || ..|+|+.|+.+++.+||+.+...+...... ..+..+..+++.+
T Consensus 288 ~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 288 ARGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp TSSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred hcCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 356799999999998 79999999 99 569999999999999999888775432222 2455566666554
Q ss_pred --CCCCHHHHHHHHHHHHHHH
Q psy3629 77 --KNFSGAELEGLVRAAQSCA 95 (358)
Q Consensus 77 --~g~sgadi~~l~~~A~~~a 95 (358)
+++.+.....++..|+..+
T Consensus 365 i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp SCCSCTTHHHHHHHHHHHHHH
T ss_pred cccCcCCcHHHHHHHHHHHHH
Confidence 4566677777777765433
No 39
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.66 E-value=2.5e-17 Score=173.99 Aligned_cols=153 Identities=27% Similarity=0.318 Sum_probs=118.6
Q ss_pred CCchhhhhhhhhhhh---hhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccc
Q psy3629 154 GTPVQECLEAGRIFI---QQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLA 229 (358)
Q Consensus 154 ~d~v~~~~~~~~~~~---~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (358)
+..++.+.+...... ..++.+...+..++||+|| ||| ||.+ |+++ +...+.+++.+
T Consensus 210 ~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp--~GtGKTtL---aral---------------a~~l~~~~i~v 269 (806)
T 1ypw_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP--PGTGKTLI---ARAV---------------ANETGAFFFLI 269 (806)
T ss_dssp SGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSC--TTSSHHHH---HHHH---------------HHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECc--CCCCHHHH---HHHH---------------HHHcCCcEEEE
Confidence 334444444433322 2344455667889999999 999 9999 9999 77777777777
Q ss_pred cCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcc
Q psy3629 230 YSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTG 309 (358)
Q Consensus 230 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~ 309 (358)
.++++.+.+.|. +|..++.+|+.++...|+++||||||.+++.|+... ..
T Consensus 270 ~~~~l~~~~~g~----------------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~--~~ 319 (806)
T 1ypw_A 270 NGPEIMSKLAGE----------------------------SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GE 319 (806)
T ss_dssp EHHHHSSSSTTH----------------------------HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--SH
T ss_pred EchHhhhhhhhh----------------------------HHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--ch
Confidence 766665555544 444555559999999999999999999999876433 23
Q ss_pred hhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 310 VHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 310 ~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
...+++++|++.|+|.....+|++|+|||+|+.||+++.|+||||..
T Consensus 320 ~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~ 366 (806)
T 1ypw_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366 (806)
T ss_dssp HHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEE
T ss_pred HHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccc
Confidence 66889999999999998888999999999999999999999999864
No 40
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=6.9e-17 Score=169.90 Aligned_cols=271 Identities=17% Similarity=0.178 Sum_probs=157.4
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccccccc-CchhhHHHHHHhcCC-
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKL-ADDVNLKELAALTKN- 78 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~-~~~~~l~~la~~t~g- 78 (358)
..+++.+|++||.++ .+|+++.| ||+ .++|+.|+.++|.++|+.+...+...... ..+..+..++..+.|
T Consensus 312 ~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 456789999999753 68999999 997 79999999999999999887664322122 245556667766544
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCcc-CCCCCChhhh------HHHhh
Q psy3629 79 ----FSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIK-PAFGSSDESL------EHFLS 147 (358)
Q Consensus 79 ----~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~k-ps~~~s~~~l------~~~~~ 147 (358)
+.+..+..++.+|+..+... ... .....++.+|+..++..... |.......+. .....
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~--~~~---------~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~ 457 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLM--PVS---------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLK 457 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHS--SSC---------CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHT
T ss_pred cccccCchHHHHHHHHHHHHHhcc--ccc---------ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHH
Confidence 45667778887775332110 000 01345888999988876221 2111111111 11111
Q ss_pred cCcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCcccc
Q psy3629 148 RGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIF 226 (358)
Q Consensus 148 ~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (358)
...++.+..++.+..........+... .++...+||+|| ||| ||.+ |+++.. ..+.++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~-~~p~~~~ll~G~--~GtGKT~l---a~~la~---------------~l~~~~ 516 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHE-HKPVGSFLFAGP--TGVGKTEV---TVQLSK---------------ALGIEL 516 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCT-TSCSEEEEEECS--TTSSHHHH---HHHHHH---------------HHTCEE
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCC-CCCceEEEEECC--CCCcHHHH---HHHHHH---------------HhcCCE
Confidence 112222222222222111111111111 234457999999 999 9999 888833 333444
Q ss_pred ccccCccccc------------ccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccc
Q psy3629 227 TLAYSPDVKR------------GFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 227 ~~~~~~~~~~------------~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~Dei 294 (358)
+.+.+++... +|+|..+.. +++...+...++|||||||
T Consensus 517 ~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~------------------------------~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGG------------------------------LLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp EEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT------------------------------HHHHHHHHCSSEEEEEETG
T ss_pred EEEechhhcchhhHhhhcCCCCCCcCccccc------------------------------hHHHHHHhCCCcEEEEeCc
Confidence 5444443321 133322211 1123333355799999999
Q ss_pred hhhhhhcCCCCCCcchhhHHHHHHHHccCCCC---------CCCCEEEEEecCCcc------------------------
Q psy3629 295 DAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------RLNNILVIGMTNRRD------------------------ 341 (358)
Q Consensus 295 D~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~~~------------------------ 341 (358)
|.+- ..+++.||+.||.-. ...+++||+|||.+.
T Consensus 567 ~~~~-------------~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~ 633 (758)
T 1r6b_X 567 EKAH-------------PDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIK 633 (758)
T ss_dssp GGSC-------------HHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHH
T ss_pred cccC-------------HHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHH
Confidence 9762 346778888777321 024689999999864
Q ss_pred -ccchhcCCCCCCccc
Q psy3629 342 -MIDEALLRPGRLEVS 356 (358)
Q Consensus 342 -~iD~a~lr~GRfd~~ 356 (358)
.++|+++. |||..
T Consensus 634 ~~~~~~l~~--R~~~~ 647 (758)
T 1r6b_X 634 KIFTPEFRN--RLDNI 647 (758)
T ss_dssp HHSCHHHHT--TCSEE
T ss_pred HhcCHHHHh--hCCcc
Confidence 67888887 99864
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=4.5e-16 Score=149.68 Aligned_cols=136 Identities=25% Similarity=0.456 Sum_probs=107.6
Q ss_pred CCccC-CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 2 DGVER-LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 2 Dg~~~-~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||+.. ..+|+||++||+|+.||++++| ||+..+++++|+.++|.+||+.++...+ ....+.+++.||+.|+||+
T Consensus 179 ~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~---~~~~~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 179 NGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP---SVLTKEDYRTLGAMTEGYS 253 (355)
T ss_dssp HHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSC---BCCCHHHHHHHHHHTTTCC
T ss_pred hcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHcCCCC
Confidence 34433 4679999999999999999999 9999999999999999999999998763 2346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc----------------------------cccChhhhhhhccCHHHHHHhhhcCcc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNK----------------------------VEVDPQALEKLCITRADFLHALETDIK 132 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~----------------------------~~~~~~~~~~~~v~~~Df~~al~~~~k 132 (358)
|+||.++|++|++.++++....... ..+.........|+.+||..|+.. ++
T Consensus 254 g~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~-~~ 332 (355)
T 2qp9_X 254 GSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKS-TR 332 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHH-SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHH-cC
Confidence 9999999999999999987643210 011112223467999999999999 99
Q ss_pred CCCCCChhhhHHH
Q psy3629 133 PAFGSSDESLEHF 145 (358)
Q Consensus 133 ps~~~s~~~l~~~ 145 (358)
|+. +.+.+..|
T Consensus 333 ps~--~~~~~~~~ 343 (355)
T 2qp9_X 333 PTV--NEDDLLKQ 343 (355)
T ss_dssp CSS--CHHHHHHH
T ss_pred CCC--CHHHHHHH
Confidence 996 33344444
No 42
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.66 E-value=6.9e-17 Score=149.24 Aligned_cols=175 Identities=30% Similarity=0.514 Sum_probs=123.6
Q ss_pred ccCCCCCChhhhHHHhhcCcccCCCchhhhhhhhhhhhhhccccccccceeeeeeccCCCCc-hhhhhhHHhhhcccccc
Q psy3629 131 IKPAFGSSDESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVE 209 (358)
Q Consensus 131 ~kps~~~s~~~l~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~ 209 (358)
++|.++.+.+.+..+.....++|+..++.+......+.+.++.....++.++||+|| ||| ||.+ |+++
T Consensus 16 ~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~--~GtGKT~l---a~~i------ 84 (272)
T 1d2n_A 16 IKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGP--PHSGKTAL---AAKI------ 84 (272)
T ss_dssp ---------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECS--TTSSHHHH---HHHH------
T ss_pred cCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECC--CCCcHHHH---HHHH------
Confidence 788888887777777767788888877777776656666666555667889999999 999 9999 9999
Q ss_pred cccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEE
Q psy3629 210 DTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHII 289 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~ii 289 (358)
+...+.+++.+.+++. +.|.+... ....++.+|..++...|+||
T Consensus 85 ---------a~~~~~~~~~i~~~~~---~~g~~~~~------------------------~~~~~~~~~~~~~~~~~~vl 128 (272)
T 1d2n_A 85 ---------AEESNFPFIKICSPDK---MIGFSETA------------------------KCQAMKKIFDDAYKSQLSCV 128 (272)
T ss_dssp ---------HHHHTCSEEEEECGGG---CTTCCHHH------------------------HHHHHHHHHHHHHTSSEEEE
T ss_pred ---------HHHhCCCEEEEeCHHH---hcCCchHH------------------------HHHHHHHHHHHHHhcCCcEE
Confidence 5556677787776654 55554432 11334555998888889999
Q ss_pred EEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC-CCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 290 IFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE-RLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 290 f~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
||||||.+++.+.... ...+.+++.|+..+++.. ...+++||+|||+|+.+|++.++ +||+..
T Consensus 129 ~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~ 192 (272)
T 1d2n_A 129 VVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTT 192 (272)
T ss_dssp EECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEE
T ss_pred EEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceE
Confidence 9999999998764321 245678888888888764 33578999999999999995444 399754
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.65 E-value=7.2e-16 Score=152.54 Aligned_cols=139 Identities=27% Similarity=0.432 Sum_probs=111.0
Q ss_pred CCCccC-CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC
Q psy3629 1 MDGVER-LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF 79 (358)
Q Consensus 1 lDg~~~-~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~ 79 (358)
|||+.. ..+|+||+|||+|+.||++++| ||+..+++++|+.++|..||+.++...+ ....+.+++.||+.|+||
T Consensus 262 l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~---~~l~~~~l~~la~~t~G~ 336 (444)
T 2zan_A 262 MQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQ---NSLTEADFQELGRKTDGY 336 (444)
T ss_dssp TTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC---EECCHHHHHHHHHHTTTC
T ss_pred HhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHcCCC
Confidence 466653 5689999999999999999999 9999999999999999999999998753 224678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCcc----------------------------------ccChhhhhhhccCHHHHHH
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKV----------------------------------EVDPQALEKLCITRADFLH 125 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~----------------------------------~~~~~~~~~~~v~~~Df~~ 125 (358)
||+||.++|++|++.++++.+...... .++.+....++|+.+||..
T Consensus 337 sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~ 416 (444)
T 2zan_A 337 SGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLR 416 (444)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHH
Confidence 999999999999999999987542100 0111112235799999999
Q ss_pred hhhcCccCCCCCChhhhHHHhh
Q psy3629 126 ALETDIKPAFGSSDESLEHFLS 147 (358)
Q Consensus 126 al~~~~kps~~~s~~~l~~~~~ 147 (358)
|+.. ++|+. +.+++..|..
T Consensus 417 a~~~-~~ps~--~~~~~~~~~~ 435 (444)
T 2zan_A 417 SLSS-TKPTV--NEQDLLKLKK 435 (444)
T ss_dssp HHHT-CCCSC--CHHHHHHHHH
T ss_pred HHHh-CCCCC--CHHHHHHHHH
Confidence 9999 99996 4445555543
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.65 E-value=3.2e-16 Score=148.53 Aligned_cols=130 Identities=25% Similarity=0.450 Sum_probs=107.2
Q ss_pred CCcc-CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 2 DGVE-RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 2 Dg~~-~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
||+. ...+|+||+|||+|+.||++++| ||+..|++++|+.++|.+||+.+++..+ ....+.+++.|++.|+|||
T Consensus 146 ~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~l~~la~~t~g~s 220 (322)
T 3eie_A 146 NGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTP---CVLTKEDYRTLGAMTEGYS 220 (322)
T ss_dssp GGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCC---CCCCHHHHHHHHHTTTTCC
T ss_pred ccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCC---CCCCHHHHHHHHHHcCCCC
Confidence 4553 45689999999999999999999 9999999999999999999999998753 2346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc----------------------------cChhhhhhhccCHHHHHHhhhcCcc
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVE----------------------------VDPQALEKLCITRADFLHALETDIK 132 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~----------------------------~~~~~~~~~~v~~~Df~~al~~~~k 132 (358)
|+||.++|+.|.+.++++..+...... ++.+......|+.+||..|++. ++
T Consensus 221 g~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~-~~ 299 (322)
T 3eie_A 221 GSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKS-TR 299 (322)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHH-SC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh-cC
Confidence 999999999999999999876522111 1111223367999999999999 99
Q ss_pred CCCCC
Q psy3629 133 PAFGS 137 (358)
Q Consensus 133 ps~~~ 137 (358)
|+...
T Consensus 300 ps~~~ 304 (322)
T 3eie_A 300 PTVNE 304 (322)
T ss_dssp CSSCT
T ss_pred CCCCH
Confidence 99643
No 45
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.65 E-value=3e-17 Score=152.31 Aligned_cols=132 Identities=33% Similarity=0.465 Sum_probs=96.9
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
..+.+++|+|| ||+ ||.+ ++++ +...+..++.+.+.++...+.
T Consensus 71 ~~~~gvll~Gp--~GtGKTtl---~~~i---------------~~~~~~~~i~~~~~~~~~~~~---------------- 114 (278)
T 1iy2_A 71 RIPKGVLLVGP--PGVGKTHL---ARAV---------------AGEARVPFITASGSDFVEMFV---------------- 114 (278)
T ss_dssp CCCCEEEEECC--TTSSHHHH---HHHH---------------HHHTTCCEEEEEHHHHHHSTT----------------
T ss_pred CCCCeEEEECC--CcChHHHH---HHHH---------------HHHcCCCEEEecHHHHHHHHh----------------
Confidence 34567999999 999 9999 8888 433334455544433322222
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC-CCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~-~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
+..++.+..+|+.++...|+++|+||+|.+...|... +.......+.+++++.+|+|......++++
T Consensus 115 ------------~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 115 ------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp ------------THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred ------------hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 3344556666999988899999999999998776431 111223467889999999998877779999
Q ss_pred EecCCccccchhcCCCCCCccc
Q psy3629 335 GMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 335 ~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
++||+|+.||++++|+||||..
T Consensus 183 a~t~~p~~ld~~l~r~~rf~~~ 204 (278)
T 1iy2_A 183 AATNRPDILDPALLRPGRFDRQ 204 (278)
T ss_dssp EEESCTTSSCHHHHSTTSSCCE
T ss_pred EecCCchhCCHhHcCCCcCCeE
Confidence 9999999999999999999975
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.65 E-value=2.1e-16 Score=157.95 Aligned_cols=144 Identities=34% Similarity=0.559 Sum_probs=111.7
Q ss_pred CCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 2 DGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 2 Dg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
|++....+|+||+|||+|+.||++++|+|||+..|++++|+.++|.+||+.+++.+ ....+.++..++..+.||++
T Consensus 333 d~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~----~l~~~~~l~~la~~t~g~s~ 408 (489)
T 3hu3_A 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM----KLADDVDLEQVANETHGHVG 408 (489)
T ss_dssp HHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS----CBCTTCCHHHHHHTCTTCCH
T ss_pred hccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC----CCcchhhHHHHHHHccCCcH
Confidence 45556678999999999999999999999999999999999999999999999876 45567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCc--cccChhhhhhhccCHHHHHHhhhcCccCCCCCChhhhHHHhhcCcccCCC
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNK--VEVDPQALEKLCITRADFLHALETDIKPAFGSSDESLEHFLSRGILNWGT 155 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~--~~~~~~~~~~~~v~~~Df~~al~~~~kps~~~s~~~l~~~~~~~~~~~~d 155 (358)
+||.++|+.|++.++++....... ............++.+||..|++. ++|+. ..+.+...+.++|+|
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~-~~ps~-----~re~~~e~p~v~W~d 478 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ-SNPSA-----LRETVVEVPQVTWED 478 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS-HHHHH-----HHGGGC---------
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHh-CCchh-----hhcccccCCCCCHHH
Confidence 999999999999998875543321 223334455678999999999999 88873 233455678999998
No 47
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.62 E-value=8.1e-16 Score=152.85 Aligned_cols=113 Identities=42% Similarity=0.620 Sum_probs=98.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||+....+|+||++||+|+.||++++||||||..|+|++|+.++|.+||+.+++.. .+..+.++..+|..|+||+
T Consensus 146 ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~----~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 146 MDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK----PLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp HHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHHTCTTCC
T ss_pred HhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC----CCcchhhHHHHHHhcCCCc
Confidence 356666778999999999999999999999999999999999999999999999876 3556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKP 133 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kp 133 (358)
|+||+++|++|+..+.++ +...++.+||..|+.+ +.+
T Consensus 222 gadL~~lv~~Aal~A~~~---------------~~~~I~~~dl~~al~~-v~~ 258 (476)
T 2ce7_A 222 GADLENLVNEAALLAARE---------------GRDKITMKDFEEAIDR-VIA 258 (476)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH-HC-
T ss_pred HHHHHHHHHHHHHHHHHc---------------CCCeecHHHHHHHHHH-Hhc
Confidence 999999999998887654 2346999999999987 543
No 48
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.61 E-value=2e-15 Score=137.89 Aligned_cols=108 Identities=44% Similarity=0.623 Sum_probs=94.6
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||.+.+..++++++||+|+.||++++|+|||+..|++++|+.++|.+||+.+.+.. ....+.++..+|+.|+||+
T Consensus 146 l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp HHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHHTCTTCC
T ss_pred HhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC----CCCcccCHHHHHHHcCCCC
Confidence 356666777999999999999999999999999999999999999999999988765 4566788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhh
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al 127 (358)
|+||+++|+.|+..+.++ +...++.+||.+++
T Consensus 222 ~~dl~~~~~~a~~~a~~~---------------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 222 GADLENLLNEAALLAARE---------------GRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCCCcCHHHHHHHh
Confidence 999999999998877654 23468999998876
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=2.9e-15 Score=137.07 Aligned_cols=109 Identities=40% Similarity=0.611 Sum_probs=97.0
Q ss_pred CCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 2 DGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 2 Dg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
|++....+++||++||+|+.+|++++|+|||+..+++++|+.++|.+||+.+++.. .+..+.++..++..|+||++
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~----~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV----PLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHHTCTTCCH
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC----CCCccccHHHHHHHcCCCCH
Confidence 45666778999999999999999999999999999999999999999999999875 35567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+||.++|+.|+..+..+ +...++.+||..|++.
T Consensus 219 ~dl~~l~~~a~~~a~~~---------------~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 219 ADLANLVNEAALFAARG---------------NKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------CCCcccHHHHHHHHHH
Confidence 99999999999888754 2457999999999987
No 50
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=6.3e-17 Score=158.97 Aligned_cols=121 Identities=9% Similarity=-0.027 Sum_probs=50.6
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccccc-ccccc-cHHHHHHHhhhcc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKR-GFIGF-SLLQRKWAELSLH 254 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~-s~~~~~~~~~~~~ 254 (358)
++.++||+|| ||| ||.+ |+++ +...+.+|+.+.++.+.. +|+|. ++..
T Consensus 49 ~~~~iLl~Gp--pGtGKT~l---ar~l---------------A~~l~~~~~~v~~~~~~~~g~vG~d~e~~--------- 99 (444)
T 1g41_A 49 TPKNILMIGP--TGVGKTEI---ARRL---------------AKLANAPFIKVEATKFTEVGYVGKEVDSI--------- 99 (444)
T ss_dssp CCCCEEEECC--TTSSHHHH---HHHH---------------HHHTTCCEEEEEGGGGC----CCCCTHHH---------
T ss_pred CCceEEEEcC--CCCCHHHH---HHHH---------------HHHcCCCceeecchhhcccceeeccHHHH---------
Confidence 4678999999 999 9999 9999 777888888888777665 46664 3444
Q ss_pred ccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 255 QDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
++.+|+.|+... ++||+|.+.... .+...+|++++||++|||+.+..+| +
T Consensus 100 -------------------lr~lf~~a~~~~----~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~ 149 (444)
T 1g41_A 100 -------------------IRDLTDSAMKLV----RQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--H 149 (444)
T ss_dssp -------------------HHHHHHHHHHHH----HHHHHHSCC------------------------------------
T ss_pred -------------------HHHHHHHHHhcc----hhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--c
Confidence 444488876654 489988765331 2336789999999999999876665 5
Q ss_pred Ee-cCCccccchhcCCCCCCcccc
Q psy3629 335 GM-TNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 335 ~a-Tn~~~~iD~a~lr~GRfd~~~ 357 (358)
++ ||+|+.||+|++||||||..+
T Consensus 150 a~~TN~~~~ld~aL~rggr~D~~i 173 (444)
T 1g41_A 150 DSHSSTRQAFRKKLREGQLDDKEI 173 (444)
T ss_dssp ------------------------
T ss_pred cccccCHHHHHHHHHcCCCcceEE
Confidence 55 999999999999999999864
No 51
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.57 E-value=1.1e-14 Score=134.97 Aligned_cols=108 Identities=44% Similarity=0.623 Sum_probs=94.5
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||.+.+..++++++||+|+.||++++|+|||+..|++++|+.++|.+||+.+++.. ....+.++..+|..|+|++
T Consensus 170 lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 170 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp HTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHHTCTTCC
T ss_pred HhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC----CCCcccCHHHHHHHcCCCC
Confidence 366677777999999999999999999999999999999999999999999988764 4556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhh
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al 127 (358)
++||+++|+.|+..+.++ +...++.+||.+|+
T Consensus 246 ~~dl~~l~~~a~~~a~~~---------------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 246 GADLENLLNEAALLAARE---------------GRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------TCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh---------------CCCCcCHHHHHHHh
Confidence 999999999998877653 23468999998886
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.56 E-value=2.6e-15 Score=149.99 Aligned_cols=114 Identities=42% Similarity=0.592 Sum_probs=99.7
Q ss_pred CCCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 1 lDg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
|||++.+..+++|++||+|+.||++++|+||||..|+|++|+.++|.+||+.+++.. .+..+.++..+|..|+|++
T Consensus 161 Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~----~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 161 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK----PLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp GGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS----CCCCSSTTHHHHTTSCSCC
T ss_pred hcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC----CCChHHHHHHHHHhcCCCC
Confidence 577887788999999999999999999999999999999999999999999988764 4667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCC
Q psy3629 81 GAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPA 134 (358)
Q Consensus 81 gadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps 134 (358)
|+||+++|++|+..+.++ +...++.+||..++.+ +.+.
T Consensus 237 gadL~~lv~~Aa~~A~~~---------------~~~~It~~dl~~al~~-v~~~ 274 (499)
T 2dhr_A 237 GADLENLLNEAALLAARE---------------GRRKITMKDLEEAADR-VMML 274 (499)
T ss_dssp HHHHHHHHHHHHHHHTTT---------------CCSSCCSHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHHHHHHHHh---------------CCCccCHHHHHHHHHH-Hhcc
Confidence 999999999998777543 2346899999999987 5443
No 53
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.50 E-value=6.5e-14 Score=129.71 Aligned_cols=109 Identities=43% Similarity=0.715 Sum_probs=97.3
Q ss_pred CCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 2 DGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 2 Dg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
|++....+++||+|||.++.||++++|+|||+..++++.|+.++|.+||+.++... ....+.++..++..+.|+++
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM----NLAEDVNLEEIAKMTEGCVG 224 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS----CBCTTCCHHHHHHHCTTCCH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC----CCCCcCCHHHHHHHcCCCCH
Confidence 45566678999999999999999999999999999999999999999999998875 35567789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++|+++|+.|...++.+ ....++.+||.+|+..
T Consensus 225 ~~i~~l~~~a~~~a~~~---------------~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 225 AELKAICTEAGMNAIRE---------------LRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------ccCcCCHHHHHHHHHH
Confidence 99999999999888765 3446999999999987
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=4.4e-14 Score=150.39 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=61.0
Q ss_pred CCCeEEEEecCCCC----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccc-cCchhhHHHHHHhc-----
Q psy3629 7 LNNILVIGMTNRRD----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKK-LADDVNLKELAALT----- 76 (358)
Q Consensus 7 ~~~V~vI~aTN~p~----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~-~~~~~~l~~la~~t----- 76 (358)
.+++.+|++||.++ .+|+++.| ||+. |+|+.|+.+++.+||+.++..+..+.. ...+..+..+++.+
T Consensus 297 ~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 297 RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 35688999999875 58999999 9986 999999999999999988876532211 22455566666654
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy3629 77 KNFSGAELEGLVRAAQS 93 (358)
Q Consensus 77 ~g~sgadi~~l~~~A~~ 93 (358)
.+|.+.....++.+|+.
T Consensus 374 ~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp SSCTHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHH
Confidence 44556666666666654
No 55
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.47 E-value=4.2e-14 Score=129.04 Aligned_cols=114 Identities=30% Similarity=0.499 Sum_probs=89.8
Q ss_pred CCccCCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 2 DGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 2 Dg~~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
|++....+++||++||+++.||++++|+|||+..+++++|+.++|.+||+.++..... ....+..+..++..+.||++
T Consensus 138 ~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 138 DGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCH
T ss_pred hCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCH
Confidence 3444566899999999999999999999999999999999999999999999987631 12223345889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccC
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKP 133 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kp 133 (358)
++|.++|+.|+..+.++ +...++.+||..|+.. +.+
T Consensus 216 ~~l~~l~~~a~~~a~~~---------------~~~~i~~~d~~~a~~~-~~~ 251 (262)
T 2qz4_A 216 ADIANICNEAALHAARE---------------GHTSVHTLNFEYAVER-VLA 251 (262)
T ss_dssp HHHHHHHHHHHTC-----------------------CCBCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHH-hcc
Confidence 99999999998877654 2346888889998887 443
No 56
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=102.93 Aligned_cols=72 Identities=36% Similarity=0.608 Sum_probs=65.7
Q ss_pred cCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhcc
Q psy3629 39 SLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCI 118 (358)
Q Consensus 39 ~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v 118 (358)
|+|+.++|.+||+.++++++ ...+++++.||+.|+||||+||+++|++|++.++++ ....|
T Consensus 1 plPd~~~R~~Il~~~l~~~~----~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~---------------~~~~i 61 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN----LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---------------RRVHV 61 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE----ECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT---------------TCSEE
T ss_pred CcCCHHHHHHHHHHHhcCCC----CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------------CCCCC
Confidence 68999999999999999873 557899999999999999999999999999999987 34579
Q ss_pred CHHHHHHhhhc
Q psy3629 119 TRADFLHALET 129 (358)
Q Consensus 119 ~~~Df~~al~~ 129 (358)
+.+||..|+.+
T Consensus 62 ~~~d~~~Al~~ 72 (78)
T 3kw6_A 62 TQEDFEMAVAK 72 (78)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999999987
No 57
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=105.70 Aligned_cols=77 Identities=35% Similarity=0.573 Sum_probs=68.5
Q ss_pred ecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhc
Q psy3629 38 ISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLC 117 (358)
Q Consensus 38 v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~ 117 (358)
-.+||.++|.+||+.++++++ +..+++++.||+.|+|||||||+++|++|++.++++ ....
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~----l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~---------------~~~~ 68 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMN----LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE---------------RRVH 68 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSE----ECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHT---------------TCSE
T ss_pred CCCcCHHHHHHHHHHHHcCCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---------------cCCC
Confidence 468999999999999999873 557899999999999999999999999999999987 2457
Q ss_pred cCHHHHHHhhhcCccCC
Q psy3629 118 ITRADFLHALETDIKPA 134 (358)
Q Consensus 118 v~~~Df~~al~~~~kps 134 (358)
|+.+||..|+.+ ++|.
T Consensus 69 I~~~df~~Al~~-v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAK-VMQK 84 (86)
T ss_dssp ECHHHHHHHHHH-HHCC
T ss_pred CCHHHHHHHHHH-HccC
Confidence 999999999998 7664
No 58
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.44 E-value=3e-14 Score=130.86 Aligned_cols=108 Identities=34% Similarity=0.576 Sum_probs=93.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.+++||++||.++.||++++|+|||+..+++++|+.++|.++|+.+++.+ ....+.+++.++..+.||+|+||.++
T Consensus 150 ~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~g~~g~dl~~l 225 (268)
T 2r62_A 150 APVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV----KLANDVNLQEVAKLTAGLAGADLANI 225 (268)
T ss_dssp SCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS----CCCSSCCTTTTTSSSCSSCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC----CCCCccCHHHHHHHcCCCCHHHHHHH
Confidence 35999999999999999999999999999999999999999999999775 34456778889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCC
Q psy3629 88 VRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAF 135 (358)
Q Consensus 88 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~ 135 (358)
|+.|+..+..+ +...++.+|+..++.. +.|..
T Consensus 226 ~~~a~~~a~~~---------------~~~~i~~~~~~~a~~~-~~~~~ 257 (268)
T 2r62_A 226 INEAALLAGRN---------------NQKEVRQQHLKEAVER-GIAGL 257 (268)
T ss_dssp HHHHHHTTSSS---------------CCCSCCHHHHHTSCTT-CCCCC
T ss_pred HHHHHHHHHHh---------------ccCCcCHHHHHHHHHH-Hhhcc
Confidence 99998765432 2346899999999988 76664
No 59
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.38 E-value=7.7e-13 Score=123.26 Aligned_cols=119 Identities=30% Similarity=0.421 Sum_probs=95.4
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.+++||++||+|+.||++++| ||+..+++++|+.++|..+|+.++...+ ...++.+++.+++.|.||++++|.++
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQG---SPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGS---CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 579999999999999999999 9999999999999999999999987653 22356789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCC
Q psy3629 88 VRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAF 135 (358)
Q Consensus 88 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~ 135 (358)
|+.|...++++........ . .......++.+||..|+.. ++|+.
T Consensus 233 ~~~a~~~a~r~~~~~~~~~-~--~~~~~~~i~~~d~~~a~~~-~~~s~ 276 (297)
T 3b9p_A 233 AKDAALEPIRELNVEQVKC-L--DISAMRAITEQDFHSSLKR-IRRSV 276 (297)
T ss_dssp HHHHTTHHHHTCC-----------CCCCCCCCHHHHHHHTTS-CCCSS
T ss_pred HHHHHHHHHHHHhhhhccc-c--cccccCCcCHHHHHHHHHH-cCCCC
Confidence 9999988887632111000 0 0012346999999999999 88875
No 60
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=125.21 Aligned_cols=121 Identities=30% Similarity=0.402 Sum_probs=96.8
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..+++||+|||+++.||++++| ||+..+++++|+.++|.++|+.++.... ....+.+++.+++.++||+++||..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQ---CCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSC---BCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcC---CCccHHHHHHHHHHcCCCCHHHHHH
Confidence 4579999999999999999999 9999999999999999999999987642 2235678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCCC
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAFG 136 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~~ 136 (358)
+|+.|...++++...... ..+ .......++.+||..|+.. ++|+..
T Consensus 294 l~~~a~~~~ir~l~~~~~-~~~--~~~~~~~i~~~d~~~al~~-~~ps~~ 339 (357)
T 3d8b_A 294 LCREASLGPIRSLQTADI-ATI--TPDQVRPIAYIDFENAFRT-VRPSVS 339 (357)
T ss_dssp HHHHHHTHHHHHCCC-------------CCCBCHHHHHHHHHH-HGGGCC
T ss_pred HHHHHHHHHHHHhhhhhh-ccc--cccccCCcCHHHHHHHHHh-cCCCCC
Confidence 999999888875321110 000 0112457999999999999 888753
No 61
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.31 E-value=2.6e-12 Score=98.38 Aligned_cols=74 Identities=26% Similarity=0.472 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHH
Q psy3629 42 NEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRA 121 (358)
Q Consensus 42 ~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~ 121 (358)
|.++|.+||+.+++++ +...+++++.||+.|+|||||||.++|++|++.++++ ....|+.+
T Consensus 2 d~~~R~~Il~~~~~~~----~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~---------------~~~~i~~~ 62 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM----SVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA---------------RRKVATEK 62 (88)
T ss_dssp CSSHHHHHHHHHHTTS----CBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH---------------SCSSBCHH
T ss_pred CHHHHHHHHHHHHCCC----CCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh---------------ccccCCHH
Confidence 5679999999999987 4567899999999999999999999999999999987 34569999
Q ss_pred HHHHhhhcCccCCC
Q psy3629 122 DFLHALETDIKPAF 135 (358)
Q Consensus 122 Df~~al~~~~kps~ 135 (358)
||..|+.+ +.+..
T Consensus 63 df~~Al~~-v~~~~ 75 (88)
T 3vlf_B 63 DFLKAVDK-VISGY 75 (88)
T ss_dssp HHHHHHHH-HTC--
T ss_pred HHHHHHHH-HhcCc
Confidence 99999998 77664
No 62
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.30 E-value=1.6e-12 Score=98.47 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHH
Q psy3629 42 NEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRA 121 (358)
Q Consensus 42 ~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~ 121 (358)
|.++|.+||+.++++++ ...+++++.||+.|+|||||||.++|++|++.++++ ....|+.+
T Consensus 2 d~~~R~~Il~~~l~~~~----~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~---------------~~~~i~~~ 62 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMN----LSEEVDLEDYVARPDKISGADINSICQESGMLAVRE---------------NRYIVLAK 62 (83)
T ss_dssp CHHHHHHHHHHHHTTSC----BCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS---------------CCSSBCHH
T ss_pred CHHHHHHHHHHHhCCCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------------ccCCcCHH
Confidence 67899999999999873 557889999999999999999999999999988865 24579999
Q ss_pred HHHHhhhcCccCCCC
Q psy3629 122 DFLHALETDIKPAFG 136 (358)
Q Consensus 122 Df~~al~~~~kps~~ 136 (358)
||..|+++ ++|+..
T Consensus 63 df~~Al~~-~~ps~~ 76 (83)
T 3aji_B 63 DFEKAYKT-VIKKDE 76 (83)
T ss_dssp HHHHHHHH-HCC---
T ss_pred HHHHHHHH-HccCch
Confidence 99999999 999864
No 63
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.26 E-value=9.6e-12 Score=120.70 Aligned_cols=120 Identities=33% Similarity=0.445 Sum_probs=95.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..+|+||++||+++.||++++| ||+..|++++|+.++|.+||+.++.... ....+.++..|++.+.||++++|..
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG---SPLTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC---CCSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 4579999999999999999999 9999999999999999999999987642 2345678899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhcCccCCC
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALETDIKPAF 135 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~~~kps~ 135 (358)
+|+.|...+++++....... .. ..+...++.+||..+++. ++|+.
T Consensus 325 L~~~a~~~~~rel~~~~~~~-~~--~~~~~~i~~~d~~~al~~-~~~s~ 369 (389)
T 3vfd_A 325 LAKDAALGPIRELKPEQVKN-MS--ASEMRNIRLSDFTESLKK-IKRSV 369 (389)
T ss_dssp HHHHHTTHHHHTSCCC---C-CS--SSCCCCCCHHHHHHHHHH-CCCSS
T ss_pred HHHHHHHHHHHhhhhhhhhc-cc--hhhcCCcCHHHHHHHHHH-cCCCC
Confidence 99999988887632211110 00 012356899999999998 88774
No 64
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.22 E-value=1.3e-12 Score=125.59 Aligned_cols=101 Identities=21% Similarity=0.266 Sum_probs=71.5
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~ 255 (358)
+..++||+|| ||| ||.+ |+++ +...+.+|+.+.++.+. .+|+|.+..
T Consensus 50 ~~~~vll~Gp--pGtGKT~l---a~~i---------------a~~~~~~~~~~~~~~l~~~~~~g~~~~----------- 98 (363)
T 3hws_A 50 GKSNILLIGP--TGSGKTLL---AETL---------------ARLLDVPFTMADATTLTEAGYVGEDVE----------- 98 (363)
T ss_dssp CCCCEEEECC--TTSSHHHH---HHHH---------------HHHTTCCEEEEEHHHHTTCHHHHHHHT-----------
T ss_pred CCCeEEEECC--CCCCHHHH---HHHH---------------HHHcCCCEEEechHHhcccccccccHH-----------
Confidence 5678999999 999 9999 9999 66667788888777665 336665421
Q ss_pred cccccccccCCCCchhHHHHHHhhcC----CCCCceEEEEccchhhhhhcCCCCCCcch-hhHHHHHHHHccCCC
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAG----PNSGLHIIIFDEIDAICKARGTAGGNTGV-HDTVVNQLLSKMDGV 325 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a----~~~~p~iif~DeiD~~~~~r~~~~~~~~~-~~~~~~~lL~~ld~~ 325 (358)
..++.+|..+ +...|+||||||||.+.+.|...+.+... ..++.+.||+.|||.
T Consensus 99 ----------------~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 99 ----------------NIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp ----------------HHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred ----------------HHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 1223336666 34578999999999999887554333222 245999999999964
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.20 E-value=1.3e-12 Score=122.18 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=86.1
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
.+...+||+|| ||| ||.+ |+++...+... ......+++.+.+.++.+.++|.+...
T Consensus 65 ~~~~~vll~G~--~GtGKT~l---a~~la~~l~~~--------~~~~~~~~~~~~~~~l~~~~~g~~~~~---------- 121 (309)
T 3syl_A 65 TPTLHMSFTGN--PGTGKTTV---ALKMAGLLHRL--------GYVRKGHLVSVTRDDLVGQYIGHTAPK---------- 121 (309)
T ss_dssp CCCCEEEEEEC--TTSSHHHH---HHHHHHHHHHT--------TSSSSCCEEEECGGGTCCSSTTCHHHH----------
T ss_pred CCCceEEEECC--CCCCHHHH---HHHHHHHHHhc--------CCcCCCcEEEEcHHHhhhhcccccHHH----------
Confidence 34567999999 999 9999 87774333211 111233556666556555555555443
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
+..+|..+ .++||||||+|.++..+... .....+++.|+..|+... .++++|+
T Consensus 122 ------------------~~~~~~~~---~~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~~~--~~~~~i~ 174 (309)
T 3syl_A 122 ------------------TKEVLKRA---MGGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMENNR--DDLVVIL 174 (309)
T ss_dssp ------------------HHHHHHHH---TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCT--TTCEEEE
T ss_pred ------------------HHHHHHhc---CCCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhcCC--CCEEEEE
Confidence 34448876 46899999999998765431 234678889999998543 4789999
Q ss_pred ecCCcc-----ccchhcCCCCCCcc
Q psy3629 336 MTNRRD-----MIDEALLRPGRLEV 355 (358)
Q Consensus 336 aTn~~~-----~iD~a~lr~GRfd~ 355 (358)
+||.++ .+||++++ ||+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp EECHHHHHHHHHHSTTHHH--HEEE
T ss_pred eCChHHHHHHHhhCHHHHH--hCCe
Confidence 998775 36899998 9964
No 66
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.17 E-value=2.8e-12 Score=129.88 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=77.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...++|+|| ||| ||.+ ++++ +...+.++..+....... .++
T Consensus 108 g~~vll~Gp--~GtGKTtl---ar~i---------------a~~l~~~~~~i~~~~~~~----~~~-------------- 149 (543)
T 3m6a_A 108 GPILCLAGP--PGVGKTSL---AKSI---------------AKSLGRKFVRISLGGVRD----ESE-------------- 149 (543)
T ss_dssp SCEEEEESS--SSSSHHHH---HHHH---------------HHHHTCEEEEECCCC------------------------
T ss_pred CCEEEEECC--CCCCHHHH---HHHH---------------HHhcCCCeEEEEecccch----hhh--------------
Confidence 456999999 999 9999 9888 444444555555433211 000
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC----------
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER---------- 327 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~---------- 327 (358)
+......+.|..+..+.+.|..|....| |+||||||.+...+.. ...+.||..||+...
T Consensus 150 -~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~ 218 (543)
T 3m6a_A 150 -IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEE 218 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCC
T ss_pred -hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCe
Confidence 1111112345555666777999998888 9999999999776421 135678888875321
Q ss_pred ---CCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 328 ---LNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 328 ---~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
..++++|+|||+++.||++++| ||++
T Consensus 219 ~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v 247 (543)
T 3m6a_A 219 TFDLSKVLFIATANNLATIPGPLRD--RMEI 247 (543)
T ss_dssp CCBCSSCEEEEECSSTTTSCHHHHH--HEEE
T ss_pred eecccceEEEeccCccccCCHHHHh--hcce
Confidence 1578999999999999999999 9965
No 67
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.16 E-value=3e-12 Score=142.46 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=60.8
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhc---CCCCC-CcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKAR---GTAGG-NTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r---~~~~~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
+|++++++|..||+.+||+||||++|+|++.| +..+. +.+...|+++|+|++||++....+|+|| +||+.-
T Consensus 1145 ~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1145 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECEE
T ss_pred hHHHHHHHHHHHHhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecccc
Confidence 99999999999999999999999999999995 33332 2367899999999999999887889888 777763
No 68
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.10 E-value=2.5e-11 Score=91.59 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHH
Q psy3629 44 DGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADF 123 (358)
Q Consensus 44 ~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df 123 (358)
++|.+||+.++++++ ...+++++.||+.|+|||||||.++|++|++.++++ ....|+.+||
T Consensus 1 ~~R~~Il~~~l~~~~----~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~---------------~~~~i~~~df 61 (82)
T 2dzn_B 1 MERRLIFGTIASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---------------NRYVILQSDL 61 (82)
T ss_dssp -------------CE----ECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT---------------TCSEECHHHH
T ss_pred CHHHHHHHHHHcCCC----CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---------------ccCCcCHHHH
Confidence 479999999998873 556789999999999999999999999999999987 3457999999
Q ss_pred HHhhhcCccCC
Q psy3629 124 LHALETDIKPA 134 (358)
Q Consensus 124 ~~al~~~~kps 134 (358)
..|+.+..+|+
T Consensus 62 ~~Al~~v~~~~ 72 (82)
T 2dzn_B 62 EEAYATQVKTD 72 (82)
T ss_dssp HHHHHTTCC--
T ss_pred HHHHHHHHcCc
Confidence 99999833454
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.10 E-value=4.3e-11 Score=115.44 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=77.6
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccc-cccccccHHHHHHHhhhccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVK-RGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~ 255 (358)
+...+||+|| ||| ||.+ |+++ +...+.+++.+.+..+. .+|+|...
T Consensus 71 ~~~~ill~Gp--~GtGKT~l---a~~l---------------a~~l~~~~~~~~~~~~~~~~~~g~~~------------ 118 (376)
T 1um8_A 71 SKSNILLIGP--TGSGKTLM---AQTL---------------AKHLDIPIAISDATSLTEAGYVGEDV------------ 118 (376)
T ss_dssp CCCCEEEECC--TTSSHHHH---HHHH---------------HHHTTCCEEEEEGGGCC--------C------------
T ss_pred CCCCEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEecchhhhhcCcCCccH------------
Confidence 4567999999 999 9999 9998 55556667776655543 34444431
Q ss_pred cccccccccCCCCchhHHHHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCC-cchhhHHHHHHHHccCCCC----
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGN-TGVHDTVVNQLLSKMDGVE---- 326 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~-~~~~~~~~~~lL~~ld~~~---- 326 (358)
+..+..+|..+. ...++||||||+|.+...|+..... +.....+.+.||..|++..
T Consensus 119 ---------------~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 183 (376)
T 1um8_A 119 ---------------ENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIP 183 (376)
T ss_dssp ---------------THHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC--
T ss_pred ---------------HHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecc
Confidence 122233354443 2367999999999998876432211 1122347888999988641
Q ss_pred ---------------CCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 327 ---------------RLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 327 ---------------~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
...++++|+||| ++.||++++| ||+.
T Consensus 184 ~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~--R~~~ 224 (376)
T 1um8_A 184 PKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKK--RTTQ 224 (376)
T ss_dssp -------------CEECTTCEEEEEEC-CTTHHHHTTT--SCSS
T ss_pred cccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHH--Hhcc
Confidence 014578889988 7889999999 9874
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.09 E-value=1.8e-11 Score=114.06 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=86.2
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccccc-ccccccHHHHHHHhhhccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKR-GFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~ 255 (358)
.+.++||+|| ||| ||.+ |+++ +...+.+++.+.++.... +|+|....
T Consensus 49 ~~~~vll~G~--~GtGKT~l---a~~l---------------a~~l~~~~~~i~~~~~~~~~~~~~~~~----------- 97 (310)
T 1ofh_A 49 TPKNILMIGP--TGVGKTEI---ARRL---------------AKLANAPFIKVEATKFTEVGYVGKEVD----------- 97 (310)
T ss_dssp CCCCEEEECC--TTSSHHHH---HHHH---------------HHHHTCCEEEEEGGGGSSCCSGGGSTT-----------
T ss_pred CCceEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEcchhcccCCccCccHH-----------
Confidence 3567999999 999 9999 9888 444455667776666543 45554321
Q ss_pred cccccccccCCCCchhHHHHHHhhcCC-----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC----
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGP-----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---- 326 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~-----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---- 326 (358)
..++.+|..+. ...++||||||+|.+.+.+...+ .......+.+.||..|++..
T Consensus 98 ----------------~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~ 160 (310)
T 1ofh_A 98 ----------------SIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTK 160 (310)
T ss_dssp ----------------HHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEET
T ss_pred ----------------HHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecc
Confidence 12222254331 13579999999999987754322 21123346778888888642
Q ss_pred ----CCCCEEEEEe----cCCccccchhcCCCCCCcc
Q psy3629 327 ----RLNNILVIGM----TNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 327 ----~~~~v~vi~a----Tn~~~~iD~a~lr~GRfd~ 355 (358)
...++++|++ ++.|+.+++++++ ||+.
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~ 195 (310)
T 1ofh_A 161 HGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPI 195 (310)
T ss_dssp TEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCE
T ss_pred cccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCc
Confidence 2246888888 6799999999998 9985
No 71
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.90 E-value=1.2e-10 Score=99.81 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=48.2
Q ss_pred chhHHHHHHhhcC-CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc-----c
Q psy3629 269 TSEFLCTIILEAG-PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD-----M 342 (358)
Q Consensus 269 ~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~-----~ 342 (358)
..+..+..+|..+ +...|+||||||+|.+.+.+...... ....++..++. ..++.+|++||.++ .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~~~~l~~~~~-------~~~~~~i~~~~~~~~~~~~~ 168 (195)
T 1jbk_A 98 EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM--DAGNMLKPALA-------RGELHCVGATTLDEYRQYIE 168 (195)
T ss_dssp HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC--CCHHHHHHHHH-------TTSCCEEEEECHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH--HHHHHHHHhhc-------cCCeEEEEeCCHHHHHHHHh
Confidence 3444555557644 45678999999999998775332211 22333444442 23678999999987 7
Q ss_pred cchhcCCCCCCcc
Q psy3629 343 IDEALLRPGRLEV 355 (358)
Q Consensus 343 iD~a~lr~GRfd~ 355 (358)
+|++++| ||+.
T Consensus 169 ~~~~l~~--r~~~ 179 (195)
T 1jbk_A 169 KDAALER--RFQK 179 (195)
T ss_dssp TCHHHHT--TEEE
T ss_pred cCHHHHH--Hhce
Confidence 8999999 9974
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.89 E-value=9e-11 Score=100.45 Aligned_cols=77 Identities=26% Similarity=0.278 Sum_probs=50.6
Q ss_pred hhHHHHHHhhcCCCC-CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc-----cc
Q psy3629 270 SEFLCTIILEAGPNS-GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD-----MI 343 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~-~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~-----~i 343 (358)
.+..+..+|..+... .|++|||||+|.+.+.+...... ..+.+.|+..++. .++++|++||.++ .+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~~----~~~~ii~~~~~~~~~~~~~~ 170 (187)
T 2p65_A 99 FEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLAR----GELRCIGATTVSEYRQFIEK 170 (187)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHHT----TCSCEEEEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHhc----CCeeEEEecCHHHHHHHHhc
Confidence 344455556665544 78999999999998775422111 2233333333332 4688999999887 58
Q ss_pred chhcCCCCCCccc
Q psy3629 344 DEALLRPGRLEVS 356 (358)
Q Consensus 344 D~a~lr~GRfd~~ 356 (358)
|++++| ||+..
T Consensus 171 ~~~l~~--R~~~i 181 (187)
T 2p65_A 171 DKALER--RFQQI 181 (187)
T ss_dssp CHHHHH--HEEEE
T ss_pred cHHHHH--hcCcc
Confidence 999999 99864
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.86 E-value=1e-09 Score=105.00 Aligned_cols=143 Identities=13% Similarity=0.073 Sum_probs=84.2
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhh-c--
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELS-L-- 253 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~-~-- 253 (358)
+...+||+|| ||+ ||.+ |+++...+ ....+++.+.+....+.+++.++......... .
T Consensus 69 ~~~~vLl~Gp--pGtGKT~l---a~~la~~l-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (368)
T 3uk6_A 69 AGRAVLIAGQ--PGTGKTAI---AMGMAQAL-------------GPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130 (368)
T ss_dssp TTCEEEEEES--TTSSHHHH---HHHHHHHH-------------CSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEEC
T ss_pred CCCEEEEECC--CCCCHHHH---HHHHHHHh-------------cccCCcccccchhhhhcccchhHHHHHHHHHHHHHH
Confidence 4578999999 999 9999 88883322 12245666666666666666655432111110 0
Q ss_pred ------------------cccccccccccCCCCchhHHHHHHhhcCCC---------CCceEEEEccchhhhhhcCCCCC
Q psy3629 254 ------------------HQDIDVKPFFFNPKNTSEFLCTIILEAGPN---------SGLHIIIFDEIDAICKARGTAGG 306 (358)
Q Consensus 254 ------------------~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~---------~~p~iif~DeiD~~~~~r~~~~~ 306 (358)
...-++..++....|+....++..|..+.. ..|+||||||+|.+..
T Consensus 131 ~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~------- 203 (368)
T 3uk6_A 131 IKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI------- 203 (368)
T ss_dssp C------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------
T ss_pred hhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------
Confidence 000011134445556666777777755543 3389999999998742
Q ss_pred CcchhhHHHHHHHHccCCCCCCCCEEEEEec-----------CCccccchhcCCCCCCcc
Q psy3629 307 NTGVHDTVVNQLLSKMDGVERLNNILVIGMT-----------NRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 307 ~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT-----------n~~~~iD~a~lr~GRfd~ 355 (358)
...+.|+..++.... .+++++++ |.++.+|+++++ ||.+
T Consensus 204 ------~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 204 ------ESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp ------HHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred ------HHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 345677777765433 46655554 468899999999 8865
No 74
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.82 E-value=2.1e-09 Score=101.70 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=72.7
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
+...+||+|| ||| ||.+ |+++ +...+.+|+.+.++... ....
T Consensus 54 ~~~~vll~G~--~GtGKT~l---a~~i---------------a~~~~~~~~~~~~~~~~------~~~~----------- 96 (338)
T 3pfi_A 54 CLDHILFSGP--AGLGKTTL---ANII---------------SYEMSANIKTTAAPMIE------KSGD----------- 96 (338)
T ss_dssp CCCCEEEECS--TTSSHHHH---HHHH---------------HHHTTCCEEEEEGGGCC------SHHH-----------
T ss_pred CCCeEEEECc--CCCCHHHH---HHHH---------------HHHhCCCeEEecchhcc------chhH-----------
Confidence 4567999999 999 9999 9998 55666667666554431 1111
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC----------
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------- 326 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------- 326 (358)
+..+ +.. ...+++|||||||.+... +.+.|+..|+...
T Consensus 97 --~~~~---------------~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~ 144 (338)
T 3pfi_A 97 --LAAI---------------LTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPA 144 (338)
T ss_dssp --HHHH---------------HHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------
T ss_pred --HHHH---------------HHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCcc
Confidence 2222 333 246789999999998532 2344444444321
Q ss_pred ------CCCCEEEEEecCCccccchhcCCCCCCccc
Q psy3629 327 ------RLNNILVIGMTNRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 327 ------~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~ 356 (358)
...++++|+|||+++.+++++++ |||..
T Consensus 145 ~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~ 178 (338)
T 3pfi_A 145 AQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQ 178 (338)
T ss_dssp CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEE
T ss_pred ccceecCCCCeEEEEeCCCccccCHHHHh--hcCEE
Confidence 01148999999999999999999 99643
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.81 E-value=5.8e-10 Score=118.69 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=70.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...+++|+|| ||+ ||.+ ++++...+..... + ..-.+..++.+....+..
T Consensus 190 ~~~~vlL~G~--pG~GKT~l---a~~la~~l~~~~~----p-~~l~~~~~~~l~~~~l~~-------------------- 239 (854)
T 1qvr_A 190 TKNNPVLIGE--PGVGKTAI---VEGLAQRIVKGDV----P-EGLKGKRIVSLQMGSLLA-------------------- 239 (854)
T ss_dssp SCCCCEEEEC--TTSCHHHH---HHHHHHHHHHTCS----C-TTSTTCEEEEECC-------------------------
T ss_pred CCCceEEEcC--CCCCHHHH---HHHHHHHHhcCCC----c-hhhcCCeEEEeehHHhhc--------------------
Confidence 3567899999 999 9999 7777443321100 0 000144455554433320
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCC-CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNS-GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~-~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
-..+.|+.|..+..+|..++.. .|+||||||+|.+.+.+...+.. ....++..++ + ..++.+|+
T Consensus 240 ------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~--~~~~~L~~~l---~----~~~i~~I~ 304 (854)
T 1qvr_A 240 ------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAV--DAGNMLKPAL---A----RGELRLIG 304 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------HHHH---H----TTCCCEEE
T ss_pred ------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchH--HHHHHHHHHH---h----CCCeEEEE
Confidence 0123456666777779988775 78999999999999875432211 1122333443 2 23678999
Q ss_pred ecCCccc----cchhcCCCCCCcc
Q psy3629 336 MTNRRDM----IDEALLRPGRLEV 355 (358)
Q Consensus 336 aTn~~~~----iD~a~lr~GRfd~ 355 (358)
|||.++. +|++++| ||++
T Consensus 305 at~~~~~~~~~~d~aL~r--Rf~~ 326 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALER--RFQP 326 (854)
T ss_dssp EECHHHHHHHTTCTTTCS--CCCC
T ss_pred ecCchHHhhhccCHHHHh--CCce
Confidence 9998864 7999999 9986
No 76
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.79 E-value=2.6e-09 Score=99.60 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 6 RLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
...+|+||+|||+++.||++++|+|||+..|+ +|+.++|.+|++.++.. .+.+.+.+++.++||++++|.
T Consensus 152 ~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~--------~~~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 152 ENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG--------GCCCHHHHHHHHHHSCSCCHH
T ss_pred cCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC--------CCCCHHHHHHHhCCCCcccHH
Confidence 45689999999999999999999999999997 58999999999988754 246688999999999999986
Q ss_pred HH
Q psy3629 86 GL 87 (358)
Q Consensus 86 ~l 87 (358)
.+
T Consensus 222 ~~ 223 (293)
T 3t15_A 222 FF 223 (293)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 77
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.1e-09 Score=101.29 Aligned_cols=139 Identities=5% Similarity=-0.015 Sum_probs=84.3
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
.+.+++++|| ||| ||.+ ++.+...+.+.... ..-..+.++.+++....+.+.-. ..+++...-.
T Consensus 44 ~~~~lli~Gp--PGTGKT~~---v~~v~~~L~~~~~~-----~~~~~~~~v~INc~~~~t~~~~~----~~I~~~L~g~- 108 (318)
T 3te6_A 44 QNKLFYITNA--DDSTKFQL---VNDVMDELITSSAR-----KELPIFDYIHIDALELAGMDALY----EKIWFAISKE- 108 (318)
T ss_dssp CCCEEEEECC--CSHHHHHH---HHHHHHHHHHTTTT-----TSSCCEEEEEEETTCCC--HHHH----HHHHHHHSCC-
T ss_pred CCCeEEEECC--CCCCHHHH---HHHHHHHHHHHhhh-----ccCCceEEEEEeccccCCHHHHH----HHHHHHhcCC-
Confidence 4677999999 999 9999 77775444322100 00114566777766653322211 2222221000
Q ss_pred ccccccccCCCCchhHHHHHHhhcC--CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAG--PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a--~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
....+.+...+..+|... ....|+||||||+|.+. . +.++..|+....- ...+++||
T Consensus 109 -------~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~~--~~s~~~vI 167 (318)
T 3te6_A 109 -------NLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWISS--KNSKLSII 167 (318)
T ss_dssp -------C--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHHC--SSCCEEEE
T ss_pred -------CCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhcccc--cCCcEEEE
Confidence 112356677888889976 45778999999999997 1 3467677765432 23479999
Q ss_pred EecCCcccc----chhcCCCCCCc
Q psy3629 335 GMTNRRDMI----DEALLRPGRLE 354 (358)
Q Consensus 335 ~aTn~~~~i----D~a~lr~GRfd 354 (358)
+++|..+.. ++++.. ||+
T Consensus 168 ~i~n~~d~~~~~L~~~v~S--R~~ 189 (318)
T 3te6_A 168 CVGGHNVTIREQINIMPSL--KAH 189 (318)
T ss_dssp EECCSSCCCHHHHHTCHHH--HTT
T ss_pred EEecCcccchhhcchhhhc--cCC
Confidence 999998764 445554 664
No 78
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.76 E-value=2.5e-09 Score=112.36 Aligned_cols=81 Identities=25% Similarity=0.268 Sum_probs=59.7
Q ss_pred CCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc---
Q psy3629 265 NPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--- 341 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--- 341 (358)
.+.|+.|+.++.+|+.++...++||||||+|.+++.++..+ ....+.+.|...++ ..++.+|++||.++
T Consensus 258 ~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~----~~~~~~~~L~~~l~----~~~~~~I~at~~~~~~~ 329 (758)
T 1r6b_X 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----GQVDAANLIKPLLS----SGKIRVIGSTTYQEFSN 329 (758)
T ss_dssp CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS----CHHHHHHHHSSCSS----SCCCEEEEEECHHHHHC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc----chHHHHHHHHHHHh----CCCeEEEEEeCchHHhh
Confidence 45677788888889999998999999999999998754321 12233344444443 35789999999875
Q ss_pred --ccchhcCCCCCCcc
Q psy3629 342 --MIDEALLRPGRLEV 355 (358)
Q Consensus 342 --~iD~a~lr~GRfd~ 355 (358)
.+|+++.| ||+.
T Consensus 330 ~~~~d~aL~~--Rf~~ 343 (758)
T 1r6b_X 330 IFEKDRALAR--RFQK 343 (758)
T ss_dssp CCCCTTSSGG--GEEE
T ss_pred hhhcCHHHHh--CceE
Confidence 57999999 9984
No 79
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.75 E-value=9.2e-09 Score=98.28 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=84.4
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
....++++|| ||+ ||.+ ++.+...+..... ....+..++.+++....+. ......+++..+..
T Consensus 43 ~~~~vll~G~--~G~GKT~l---~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~----~~~~~~l~~~l~~~- 106 (387)
T 2v1u_A 43 KPSNALLYGL--TGTGKTAV---ARLVLRRLEARAS------SLGVLVKPIYVNARHRETP----YRVASAIAEAVGVR- 106 (387)
T ss_dssp CCCCEEECBC--TTSSHHHH---HHHHHHHHHHHHH------HHTCCEEEEEEETTTSCSH----HHHHHHHHHHHSCC-
T ss_pred CCCcEEEECC--CCCCHHHH---HHHHHHHHHHHHh------ccCCCeEEEEEECCcCCCH----HHHHHHHHHHhCCC-
Confidence 3567999999 999 9999 7777332211000 0011455666665544211 11111122221110
Q ss_pred ccccccccCCCCc-hhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEE
Q psy3629 257 IDVKPFFFNPKNT-SEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVI 334 (358)
Q Consensus 257 ~~~~~~~~~~~~~-~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi 334 (358)
....|. .......+++.++. ..|+||||||+|.+...+ ....++..++..++......++.+|
T Consensus 107 -------~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~~~~~~~~~~~I 171 (387)
T 2v1u_A 107 -------VPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQELGDRVWVSLV 171 (387)
T ss_dssp -------CCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGGCC-----CEEE
T ss_pred -------CCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchhhcCCCceEEEE
Confidence 011222 23345556665544 459999999999997653 1346788888888765423478999
Q ss_pred EecCCc---cccchhcCCCCCCcc
Q psy3629 335 GMTNRR---DMIDEALLRPGRLEV 355 (358)
Q Consensus 335 ~aTn~~---~~iD~a~lr~GRfd~ 355 (358)
++||.+ +.+++++.+ ||..
T Consensus 172 ~~t~~~~~~~~l~~~l~~--r~~~ 193 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKS--SLGE 193 (387)
T ss_dssp EECSCSTTSSSSCHHHHT--TTTS
T ss_pred EEECCCchHhhhCHHHHh--cCCC
Confidence 999998 789999998 8864
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.67 E-value=1.2e-08 Score=104.20 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=41.0
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC-----------CCCCEEEEEecCCcc-------------
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE-----------RLNNILVIGMTNRRD------------- 341 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~-----------~~~~v~vi~aTn~~~------------- 341 (358)
.+|+||||||.+-+. ..+.|+..|+.-. -..++.||||||.++
T Consensus 392 ~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni 458 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNI 458 (595)
T ss_dssp SSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTT
T ss_pred CCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhcc
Confidence 479999999987322 3455666655211 124688999999997
Q ss_pred ccchhcCCCCCCccc
Q psy3629 342 MIDEALLRPGRLEVS 356 (358)
Q Consensus 342 ~iD~a~lr~GRfd~~ 356 (358)
.|++|+++ |||..
T Consensus 459 ~l~~aLl~--RFDl~ 471 (595)
T 3f9v_A 459 NLPPTILS--RFDLI 471 (595)
T ss_dssp CSCSSSGG--GCSCC
T ss_pred CCCHHHHh--hCeEE
Confidence 89999999 99964
No 81
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.62 E-value=3.7e-09 Score=105.01 Aligned_cols=115 Identities=17% Similarity=0.115 Sum_probs=68.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
...++||+|| ||+ ||.+ |+++...+..... ...-.+..++.+... ++|.
T Consensus 200 ~~~~~LL~G~--pG~GKT~l---a~~la~~l~~~~~-----p~~l~~~~~~~l~~~---~~~~----------------- 249 (468)
T 3pxg_A 200 TKNNPVLIGE--PGVGKTAI---AEGLAQQIINNEV-----PEILRDKRVMTLDMG---TKYR----------------- 249 (468)
T ss_dssp SSCEEEEESC--TTTTTHHH---HHHHHHHHHSSCS-----CTTTSSCCEECC---------------------------
T ss_pred CCCCeEEECC--CCCCHHHH---HHHHHHHHHhCCC-----ChhhcCCeEEEeeCC---cccc-----------------
Confidence 3567899999 999 9999 8777433321100 001123334444332 2233
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
|+.|..+..+|..++...|+||||| +. . ...+.|+..|+ ..++.+|+|
T Consensus 250 -----------g~~e~~~~~~~~~~~~~~~~iLfiD------~~------~-----~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 250 -----------GEFEDRLKKVMDEIRQAGNIILFID------AA------I-----DASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT----SSSCEEEEE
T ss_pred -----------chHHHHHHHHHHHHHhcCCeEEEEe------Cc------h-----hHHHHHHHhhc----CCCEEEEec
Confidence 4444555556999998899999999 11 1 13355666665 347999999
Q ss_pred cCCcc-----ccchhcCCCCCCccc
Q psy3629 337 TNRRD-----MIDEALLRPGRLEVS 356 (358)
Q Consensus 337 Tn~~~-----~iD~a~lr~GRfd~~ 356 (358)
||.++ .+|++++| ||.+.
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~~i 320 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQPI 320 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEEEE
T ss_pred CCHHHHHHHhhcCHHHHH--hCccc
Confidence 99998 69999999 99753
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.61 E-value=4.2e-09 Score=110.60 Aligned_cols=115 Identities=16% Similarity=0.106 Sum_probs=69.1
Q ss_pred ccceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccc
Q psy3629 177 SGLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255 (358)
Q Consensus 177 ~~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 255 (358)
....++||+|| ||| ||.+ |+++...+..... .....+..++.+.. .
T Consensus 199 ~~~~~vLL~G~--pGtGKT~l---a~~la~~l~~~~~-----p~~l~~~~~~~~~~---g-------------------- 245 (758)
T 3pxi_A 199 RTKNNPVLIGE--PGVGKTAI---AEGLAQQIINNEV-----PEILRDKRVMTLDM---G-------------------- 245 (758)
T ss_dssp SSSCEEEEESC--TTTTTHHH---HHHHHHHHHSSCS-----CTTTSSCCEECC--------------------------
T ss_pred CCCCCeEEECC--CCCCHHHH---HHHHHHHHhcCCC-----ChhhcCCeEEEecc---c--------------------
Confidence 34567999999 999 9999 8887443321100 00001223333322 1
Q ss_pred cccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEE
Q psy3629 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIG 335 (358)
Q Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~ 335 (358)
..+.|+.|..++.+|..++...|+||||| + . ....+.|+..|+ ..++.+|+
T Consensus 246 --------~~~~G~~e~~l~~~~~~~~~~~~~iLfiD---------~---~-----~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 246 --------TKYRGEFEDRLKKVMDEIRQAGNIILFID---------A---A-----IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC---------C----------------CCCTT----SSSCEEEE
T ss_pred --------ccccchHHHHHHHHHHHHHhcCCEEEEEc---------C---c-----hhHHHHHHHHHh----cCCEEEEe
Confidence 22345566666777999999999999999 1 0 113456666665 44799999
Q ss_pred ecCCcc-----ccchhcCCCCCCcc
Q psy3629 336 MTNRRD-----MIDEALLRPGRLEV 355 (358)
Q Consensus 336 aTn~~~-----~iD~a~lr~GRfd~ 355 (358)
|||.++ .+|+|+.| ||.+
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~~ 319 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQP 319 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEEE
T ss_pred CCChHHHHHHhhccHHHHh--hCcE
Confidence 999999 69999999 9965
No 83
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.60 E-value=1.2e-08 Score=95.14 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=41.6
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC---------CCCCEEEEEecCC---------------
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------RLNNILVIGMTNR--------------- 339 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------~~~~v~vi~aTn~--------------- 339 (358)
...+||||||+|.+-+ .+.+.|++.|+.-. ...++++|+|||.
T Consensus 118 ~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~ 184 (311)
T 4fcw_A 118 RPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPY 184 (311)
T ss_dssp CSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCS
T ss_pred CCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccH
Confidence 3458999999998732 34566666665321 1136889999999
Q ss_pred -----------ccccchhcCCCCCCccc
Q psy3629 340 -----------RDMIDEALLRPGRLEVS 356 (358)
Q Consensus 340 -----------~~~iD~a~lr~GRfd~~ 356 (358)
.+.++++++. |||..
T Consensus 185 ~~l~~~~~~~~~~~~~~~l~~--R~~~~ 210 (311)
T 4fcw_A 185 ERIRDEVFKVLQQHFRPEFLN--RLDEI 210 (311)
T ss_dssp STHHHHTHHHHHHHSCHHHHT--TCSEE
T ss_pred HHHHHHHHHHHHHhCCHHHHh--cCCeE
Confidence 6688899987 99864
No 84
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.59 E-value=1.9e-08 Score=94.18 Aligned_cols=107 Identities=21% Similarity=0.272 Sum_probs=67.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
....++++|| ||+ ||.+ |+++ +...+.+++.+.++... ....
T Consensus 37 ~~~~vll~G~--~GtGKT~l---a~~i---------------~~~~~~~~~~~~~~~~~------~~~~----------- 79 (324)
T 1hqc_A 37 PLEHLLLFGP--PGLGKTTL---AHVI---------------AHELGVNLRVTSGPAIE------KPGD----------- 79 (324)
T ss_dssp CCCCCEEECC--TTCCCHHH---HHHH---------------HHHHTCCEEEECTTTCC------SHHH-----------
T ss_pred CCCcEEEECC--CCCCHHHH---HHHH---------------HHHhCCCEEEEeccccC------ChHH-----------
Confidence 3467999999 999 9999 8888 44444555555544331 1111
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC----------
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE---------- 326 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~---------- 326 (358)
+... |..+ ...+++|||||+|.+... . .+.|+..|+...
T Consensus 80 --l~~~---------------l~~~-~~~~~~l~lDEi~~l~~~---------~----~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 80 --LAAI---------------LANS-LEEGDILFIDEIHRLSRQ---------A----EEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp --HHHH---------------HTTT-CCTTCEEEETTTTSCCHH---------H----HHHHHHHHHHSEEEECCSSSSS
T ss_pred --HHHH---------------HHHh-ccCCCEEEEECCcccccc---------h----HHHHHHHHHhhhhHHhcccccc
Confidence 1122 3331 245789999999988533 1 223333333211
Q ss_pred ------CCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 327 ------RLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 327 ------~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
...++.+|+|||+++.+++++++ ||+
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~ 160 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLS--RFG 160 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTT--TCS
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHh--ccc
Confidence 11258899999999999999998 996
No 85
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.46 E-value=5.7e-08 Score=80.71 Aligned_cols=103 Identities=11% Similarity=0.101 Sum_probs=62.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...+|++|| ||| ||.+ |+++... ....+.+|+ +.+...... ..
T Consensus 24 ~~~vll~G~--~GtGKt~l---A~~i~~~------------~~~~~~~~v-~~~~~~~~~----~~-------------- 67 (145)
T 3n70_A 24 DIAVWLYGA--PGTGRMTG---ARYLHQF------------GRNAQGEFV-YRELTPDNA----PQ-------------- 67 (145)
T ss_dssp CSCEEEESS--TTSSHHHH---HHHHHHS------------STTTTSCCE-EEECCTTTS----SC--------------
T ss_pred CCCEEEECC--CCCCHHHH---HHHHHHh------------CCccCCCEE-EECCCCCcc----hh--------------
Confidence 345899999 999 9999 9888321 223456677 666554222 10
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
.... |..|. .++|||||||.+-.. . ...|+..|.... .++.+|+||
T Consensus 68 -~~~~---------------~~~a~---~g~l~ldei~~l~~~---------~----q~~Ll~~l~~~~--~~~~~I~~t 113 (145)
T 3n70_A 68 -LNDF---------------IALAQ---GGTLVLSHPEHLTRE---------Q----QYHLVQLQSQEH--RPFRLIGIG 113 (145)
T ss_dssp -HHHH---------------HHHHT---TSCEEEECGGGSCHH---------H----HHHHHHHHHSSS--CSSCEEEEE
T ss_pred -hhcH---------------HHHcC---CcEEEEcChHHCCHH---------H----HHHHHHHHhhcC--CCEEEEEEC
Confidence 1222 55553 478999999998443 2 234444443322 357789999
Q ss_pred CCccccchhcCCCCCCc
Q psy3629 338 NRRDMIDEALLRPGRLE 354 (358)
Q Consensus 338 n~~~~iD~a~lr~GRfd 354 (358)
|++-. .+++.|+|+
T Consensus 114 ~~~~~---~~~~~~~~~ 127 (145)
T 3n70_A 114 DTSLV---ELAASNHII 127 (145)
T ss_dssp SSCHH---HHHHHSCCC
T ss_pred CcCHH---HHHHcCCCC
Confidence 98532 344455554
No 86
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.46 E-value=2.3e-08 Score=93.92 Aligned_cols=110 Identities=22% Similarity=0.134 Sum_probs=72.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
+..+|++|| ||+ ||.+ ++++ +...+.+++.+.+++. |. ..
T Consensus 48 ~~~~L~~G~--~G~GKT~l---a~~l---------------a~~l~~~~~~i~~~~~-----~~--~~------------ 88 (324)
T 3u61_B 48 PHIILHSPS--PGTGKTTV---AKAL---------------CHDVNADMMFVNGSDC-----KI--DF------------ 88 (324)
T ss_dssp CSEEEECSS--TTSSHHHH---HHHH---------------HHHTTEEEEEEETTTC-----CH--HH------------
T ss_pred CeEEEeeCc--CCCCHHHH---HHHH---------------HHHhCCCEEEEccccc-----CH--HH------------
Confidence 456899999 999 9999 9988 5555667777765553 11 11
Q ss_pred cccccccCCCCchhHHHHHHhhc-CCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEA-GPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~-a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
++.. +...... .....+.||||||+|.+.+. ...+.|+..|+... .++.+|+|
T Consensus 89 -i~~~-----------~~~~~~~~~~~~~~~vliiDEi~~l~~~------------~~~~~L~~~le~~~--~~~~iI~~ 142 (324)
T 3u61_B 89 -VRGP-----------LTNFASAASFDGRQKVIVIDEFDRSGLA------------ESQRHLRSFMEAYS--SNCSIIIT 142 (324)
T ss_dssp -HHTH-----------HHHHHHBCCCSSCEEEEEEESCCCGGGH------------HHHHHHHHHHHHHG--GGCEEEEE
T ss_pred -HHHH-----------HHHHHhhcccCCCCeEEEEECCcccCcH------------HHHHHHHHHHHhCC--CCcEEEEE
Confidence 1111 0000111 11237899999999998521 12345555555443 36789999
Q ss_pred cCCccccchhcCCCCCCcc
Q psy3629 337 TNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 337 Tn~~~~iD~a~lr~GRfd~ 355 (358)
||+++.+++++++ ||.+
T Consensus 143 ~n~~~~l~~~l~s--R~~~ 159 (324)
T 3u61_B 143 ANNIDGIIKPLQS--RCRV 159 (324)
T ss_dssp ESSGGGSCTTHHH--HSEE
T ss_pred eCCccccCHHHHh--hCcE
Confidence 9999999999998 7754
No 87
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.45 E-value=1.9e-08 Score=99.36 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=65.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
..++||+|| ||| ||.+ |+.+ +...+.+|+.+.+... |. ..
T Consensus 50 ~~~vLL~Gp--pGtGKTtl---Ar~i---------------a~~~~~~f~~l~a~~~-----~~--~~------------ 90 (447)
T 3pvs_A 50 LHSMILWGP--PGTGKTTL---AEVI---------------ARYANADVERISAVTS-----GV--KE------------ 90 (447)
T ss_dssp CCEEEEECS--TTSSHHHH---HHHH---------------HHHTTCEEEEEETTTC-----CH--HH------------
T ss_pred CcEEEEECC--CCCcHHHH---HHHH---------------HHHhCCCeEEEEeccC-----CH--HH------------
Confidence 357999999 999 9999 9998 5555666666553222 11 11
Q ss_pred cccccccCCCCchhHHHHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEE
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILV 333 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~v 333 (358)
++.+ |..|+ ...++||||||||.+... ..+.||..|+. ..+++
T Consensus 91 -ir~~---------------~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~l 137 (447)
T 3pvs_A 91 -IREA---------------IERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITF 137 (447)
T ss_dssp -HHHH---------------HHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEE
T ss_pred -HHHH---------------HHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEE
Confidence 2222 33332 356799999999998433 12345555553 34677
Q ss_pred EEec--CCccccchhcCCCCCCccc
Q psy3629 334 IGMT--NRRDMIDEALLRPGRLEVS 356 (358)
Q Consensus 334 i~aT--n~~~~iD~a~lr~GRfd~~ 356 (358)
|++| |....+++++++ |+.+.
T Consensus 138 I~att~n~~~~l~~aL~s--R~~v~ 160 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RARVY 160 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEEEE
T ss_pred EecCCCCcccccCHHHhC--ceeEE
Confidence 7766 555689999999 77653
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.43 E-value=2.1e-07 Score=77.15 Aligned_cols=89 Identities=9% Similarity=0.034 Sum_probs=57.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhccccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDI 257 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 257 (358)
...++++|| ||| ||.+ |+++ +.... +++.+.+......+
T Consensus 27 ~~~vll~G~--~GtGKt~l---A~~i---------------~~~~~-~~~~~~~~~~~~~~------------------- 66 (143)
T 3co5_A 27 TSPVFLTGE--AGSPFETV---ARYF---------------HKNGT-PWVSPARVEYLIDM------------------- 66 (143)
T ss_dssp SSCEEEEEE--TTCCHHHH---HGGG---------------CCTTS-CEECCSSTTHHHHC-------------------
T ss_pred CCcEEEECC--CCccHHHH---HHHH---------------HHhCC-CeEEechhhCChHh-------------------
Confidence 456999999 999 9999 9999 55554 67777655542111
Q ss_pred cccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 258 DVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 258 ~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
...+ |+.|+ ..+|||||||.+-.. ... .|+..|+.-. ..++.+|+||
T Consensus 67 -~~~~---------------~~~a~---~~~l~lDei~~l~~~---------~q~----~Ll~~l~~~~-~~~~~iI~~t 113 (143)
T 3co5_A 67 -PMEL---------------LQKAE---GGVLYVGDIAQYSRN---------IQT----GITFIIGKAE-RCRVRVIASC 113 (143)
T ss_dssp -HHHH---------------HHHTT---TSEEEEEECTTCCHH---------HHH----HHHHHHHHHT-TTTCEEEEEE
T ss_pred -hhhH---------------HHhCC---CCeEEEeChHHCCHH---------HHH----HHHHHHHhCC-CCCEEEEEec
Confidence 1122 66665 479999999998443 222 2333333221 3467899999
Q ss_pred CCc
Q psy3629 338 NRR 340 (358)
Q Consensus 338 n~~ 340 (358)
|++
T Consensus 114 n~~ 116 (143)
T 3co5_A 114 SYA 116 (143)
T ss_dssp EEC
T ss_pred CCC
Confidence 876
No 89
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.43 E-value=1e-07 Score=91.15 Aligned_cols=67 Identities=31% Similarity=0.384 Sum_probs=49.9
Q ss_pred hHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHH-HHHHHHccCCCCCCCCEEEEEecCCc---cccchh
Q psy3629 271 EFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTV-VNQLLSKMDGVERLNNILVIGMTNRR---DMIDEA 346 (358)
Q Consensus 271 e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~-~~~lL~~ld~~~~~~~v~vi~aTn~~---~~iD~a 346 (358)
+..+..+++.++...+ ||||||+|.+...+. ..+ +..|+... .++.+|+|||.+ +.++++
T Consensus 120 ~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~---------~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~ 183 (384)
T 2qby_B 120 GEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG---------GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPR 183 (384)
T ss_dssp HHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT---------SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHH
T ss_pred HHHHHHHHHHhccCCC-EEEEECHHHhccCCC---------CceeHHHHhcCC------cceEEEEEECCCchHhhhCHH
Confidence 3456667777777666 999999999976521 234 66777665 478999999998 788999
Q ss_pred cCCCCCCcc
Q psy3629 347 LLRPGRLEV 355 (358)
Q Consensus 347 ~lr~GRfd~ 355 (358)
+++ ||..
T Consensus 184 l~s--r~~~ 190 (384)
T 2qby_B 184 VLS--SLGP 190 (384)
T ss_dssp HHH--TCCC
T ss_pred HHh--cCCC
Confidence 988 7754
No 90
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.42 E-value=1.9e-07 Score=81.51 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=40.5
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
..++||||||+|.+.+. ..+.|+..++... .++.+|++||.++.+++++.+ ||..
T Consensus 101 ~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~~--~~~~~i~~~~~~~~~~~~l~~--r~~~ 155 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-------------AQAALRRTMEMYS--KSCRFILSCNYVSRIIEPIQS--RCAV 155 (226)
T ss_dssp CSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSEE
T ss_pred cCceEEEEeChhhcCHH-------------HHHHHHHHHHhcC--CCCeEEEEeCChhhcCHHHHH--hCce
Confidence 57899999999998543 1334444444332 368899999999999999998 7763
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.41 E-value=3.3e-07 Score=106.51 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=47.4
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCC--------CCEEEEEecCCcc-----ccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERL--------NNILVIGMTNRRD-----MIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~--------~~v~vi~aTn~~~-----~iD~a~lr 349 (358)
...++||||||||.....+. +.+..-.++.|++ +..|+... .++.+|||||+|. .||++++|
T Consensus 1334 ~gk~~VlFiDEinmp~~d~y----g~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKY----GSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSS----SCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred CCceEEEEeccccccccccc----CchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Confidence 45668999999997443332 2235667888887 55554321 3589999999995 89999999
Q ss_pred CCCCcc
Q psy3629 350 PGRLEV 355 (358)
Q Consensus 350 ~GRfd~ 355 (358)
||-+
T Consensus 1409 --rf~v 1412 (2695)
T 4akg_A 1409 --HAAI 1412 (2695)
T ss_dssp --TEEE
T ss_pred --eeeE
Confidence 8854
No 92
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.40 E-value=1e-07 Score=90.13 Aligned_cols=57 Identities=21% Similarity=0.332 Sum_probs=39.3
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC----C---C----CCCCEEEEEecCCcc-ccchhcCCCCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG----V---E----RLNNILVIGMTNRRD-MIDEALLRPGR 352 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~----~---~----~~~~v~vi~aTn~~~-~iD~a~lr~GR 352 (358)
.++||||||||.+... ..+.|+..|+. + . ...++++|+|||..+ .+++++++ |
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R 208 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--R 208 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--T
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--h
Confidence 3689999999987443 23344443331 1 1 113689999999755 89999999 9
Q ss_pred Cccc
Q psy3629 353 LEVS 356 (358)
Q Consensus 353 fd~~ 356 (358)
|+++
T Consensus 209 ~~~~ 212 (350)
T 1g8p_A 209 FGLS 212 (350)
T ss_dssp CSEE
T ss_pred cceE
Confidence 9874
No 93
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.39 E-value=1.2e-08 Score=96.06 Aligned_cols=57 Identities=9% Similarity=0.306 Sum_probs=36.3
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc---ccchhcCCCCCCc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD---MIDEALLRPGRLE 354 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~---~iD~a~lr~GRfd 354 (358)
.|+||||||+|.+.+.+. .... |+..++.....+..+|++++|.|+ .+++++++ ||+
T Consensus 98 ~~~vL~iDEi~~l~~~~~-------~~~~----l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~ 157 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKER-------TQIE----FFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFE 157 (324)
T ss_dssp TCSEEEEECGGGGTTCHH-------HHHH----HHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHH
T ss_pred CCCEEEEcCcccccCChH-------HHHH----HHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--ccc
Confidence 378999999999865421 1222 222222222223467888888887 68999988 875
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.35 E-value=2.2e-07 Score=92.85 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=35.8
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC-------CCC-CCCCEEEEEecCCccc---cchhcCCCCCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD-------GVE-RLNNILVIGMTNRRDM---IDEALLRPGRL 353 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld-------~~~-~~~~v~vi~aTn~~~~---iD~a~lr~GRf 353 (358)
.++|||||||+.+- ..+.+.||..|+ |.. .....++|+|||++.. ..+|+++ ||
T Consensus 109 ~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF 173 (500)
T 3nbx_X 109 EAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RM 173 (500)
T ss_dssp GCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TC
T ss_pred cceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HH
Confidence 57899999997642 234566776664 221 1122357888886432 3458999 99
Q ss_pred ccc
Q psy3629 354 EVS 356 (358)
Q Consensus 354 d~~ 356 (358)
+++
T Consensus 174 ~~~ 176 (500)
T 3nbx_X 174 LIR 176 (500)
T ss_dssp CEE
T ss_pred HHH
Confidence 764
No 95
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.32 E-value=1.1e-07 Score=89.59 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=37.0
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCC-------C--CCCCCEEEEEecCCcc-----ccchhcCCCC
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG-------V--ERLNNILVIGMTNRRD-----MIDEALLRPG 351 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~-------~--~~~~~v~vi~aTn~~~-----~iD~a~lr~G 351 (358)
.+||||||+|.+-+. ..+.|+..|+. . ....+++||+|+|.++ .+++++++
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 379999999986332 34445444442 1 1223578888888554 38999999
Q ss_pred CCccc
Q psy3629 352 RLEVS 356 (358)
Q Consensus 352 Rfd~~ 356 (358)
||+++
T Consensus 175 Rf~~~ 179 (331)
T 2r44_A 175 RFMMK 179 (331)
T ss_dssp TSSEE
T ss_pred heeEE
Confidence 99863
No 96
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=1.2e-07 Score=90.29 Aligned_cols=71 Identities=28% Similarity=0.371 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCC-CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCc---cccchhc
Q psy3629 272 FLCTIILEAGPNS-GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRR---DMIDEAL 347 (358)
Q Consensus 272 ~~~~~~f~~a~~~-~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~---~~iD~a~ 347 (358)
.....+++..+.. .|+||||||+|.+...++ ..++..|+..++.. ...++.+|++||.+ +.+++++
T Consensus 114 ~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~ 183 (386)
T 2qby_A 114 ELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRV 183 (386)
T ss_dssp HHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHH
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHH
Confidence 3345555554443 499999999999976521 23567777777655 23478999999988 4678888
Q ss_pred CCCCCCc
Q psy3629 348 LRPGRLE 354 (358)
Q Consensus 348 lr~GRfd 354 (358)
.+ ||.
T Consensus 184 ~~--r~~ 188 (386)
T 2qby_A 184 KS--SLS 188 (386)
T ss_dssp HH--TTT
T ss_pred hc--cCC
Confidence 77 664
No 97
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=2.8e-07 Score=92.55 Aligned_cols=118 Identities=15% Similarity=0.126 Sum_probs=70.5
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
....+||+|| ||+ ||.+ |+++ +...+++++.+.+++..+......... +.. ..
T Consensus 76 ~~~~lLL~Gp--pGtGKTtl---a~~l---------------a~~l~~~~i~in~s~~~~~~~~~~~i~----~~~--~~ 129 (516)
T 1sxj_A 76 VFRAAMLYGP--PGIGKTTA---AHLV---------------AQELGYDILEQNASDVRSKTLLNAGVK----NAL--DN 129 (516)
T ss_dssp SCSEEEEECS--TTSSHHHH---HHHH---------------HHHTTCEEEEECTTSCCCHHHHHHTGG----GGT--TB
T ss_pred CCcEEEEECC--CCCCHHHH---HHHH---------------HHHcCCCEEEEeCCCcchHHHHHHHHH----HHh--cc
Confidence 3578999999 999 9999 9999 666677888888877654333221111 000 00
Q ss_pred ccccccccCCCCchhHHHHHHhhcC-----CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAG-----PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNI 331 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a-----~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v 331 (358)
..+..+ |..+ ....++||||||+|.+..... ..++.|+..++.. ...+
T Consensus 130 ~~~~~~---------------~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 130 MSVVGY---------------FKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp CCSTTT---------------TTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHHHC--SSCE
T ss_pred ccHHHH---------------HhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHHhc--CCCE
Confidence 113344 5555 457789999999999965411 1244444444432 2246
Q ss_pred EEEEecCCccccchhcCC
Q psy3629 332 LVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 332 ~vi~aTn~~~~iD~a~lr 349 (358)
++++++.....+.+ +.|
T Consensus 183 Ili~~~~~~~~l~~-l~~ 199 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FDR 199 (516)
T ss_dssp EEEESCTTSSTTGG-GTT
T ss_pred EEEEcCCCCccchh-hHh
Confidence 66666655555553 444
No 98
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.22 E-value=6.7e-07 Score=83.66 Aligned_cols=39 Identities=13% Similarity=0.009 Sum_probs=29.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|| ||| ||.+ |+++... ....+.+|+.++++..
T Consensus 25 ~~~vLi~Ge--~GtGKt~l---Ar~i~~~------------~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 25 DATVLIHGD--SGTGKELV---ARALHAC------------SARSDRPLVTLNCAAL 64 (304)
T ss_dssp TSCEEEESC--TTSCHHHH---HHHHHHH------------SSCSSSCCCEEECSSC
T ss_pred CCcEEEECC--CCchHHHH---HHHHHHh------------CcccCCCeEEEeCCCC
Confidence 456999999 999 9999 8888321 2345667888877665
No 99
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.22 E-value=5.7e-07 Score=101.65 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=82.9
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
....++++|| ||| ||.+ |.++..... .......|+. ..+...... |...+++
T Consensus 1426 ~g~~vll~Gp--pGtGKT~L---A~ala~ea~----------~~G~~v~Fi~--~e~~~~~l~---------a~~~G~d- 1478 (2050)
T 3cmu_A 1426 MGRIVEIYGP--ESSGKTTL---TLQVIAAAQ----------REGKTCAFID--AEHALDPIY---------ARKLGVD- 1478 (2050)
T ss_dssp TTSEEEEECC--TTSSHHHH---HHHHHHHHH----------TTTCCEEEEC--TTSCCCHHH---------HHHTTCC-
T ss_pred CCeEEEEECC--CCCCHHHH---HHHHHHHHH----------HcCCcEEEEE--cccccCHHH---------HHHcCCC-
Confidence 4577999999 999 9999 665521110 1112222332 222211111 1222221
Q ss_pred ccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhc---CCCCCCcc-hhhHHHHHHHHccCCCCCCCCEE
Q psy3629 257 IDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKAR---GTAGGNTG-VHDTVVNQLLSKMDGVERLNNIL 332 (358)
Q Consensus 257 ~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r---~~~~~~~~-~~~~~~~~lL~~ld~~~~~~~v~ 332 (358)
+..+.-.....+|++.+.++..++..+|++|||||++++++.+ +..++++. ...|+++++|.+|++.....+++
T Consensus 1479 --l~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~ 1556 (2050)
T 3cmu_A 1479 --IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL 1556 (2050)
T ss_dssp --TTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred --chhceeecCChHHHHHHHHHHHHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcE
Confidence 2333333446789999999999999999999999999999863 32222222 25899999999999987767776
Q ss_pred EEEec
Q psy3629 333 VIGMT 337 (358)
Q Consensus 333 vi~aT 337 (358)
||.+-
T Consensus 1557 VI~tN 1561 (2050)
T 3cmu_A 1557 LIFIN 1561 (2050)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 66554
No 100
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.22 E-value=1.1e-06 Score=77.40 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=44.8
Q ss_pred HHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 274 CTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 274 ~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
++.+++.+. ...|.+|||||+|.+-. ..++.|+..++... .++.+|++||+++.+++++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~~~~--~~~~~i~~t~~~~~~~~~l~~ 175 (250)
T 1njg_A 111 TRDLLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILS 175 (250)
T ss_dssp HHHHHHSCCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHHHHHSCC--TTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhhhchhcCCceEEEEECcccccH-------------HHHHHHHHHHhcCC--CceEEEEEeCChHhCCHHHHH
Confidence 344455543 45689999999999732 23456666666443 378999999999999999887
Q ss_pred CCCC
Q psy3629 350 PGRL 353 (358)
Q Consensus 350 ~GRf 353 (358)
|+
T Consensus 176 --r~ 177 (250)
T 1njg_A 176 --RC 177 (250)
T ss_dssp --TS
T ss_pred --Hh
Confidence 64
No 101
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.20 E-value=6.6e-08 Score=90.80 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=47.6
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhc
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEAL 347 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~ 347 (358)
+.|..+..+++..++.. +||||+++.+...+... +..+...+.++++|.+|+++-...++.+|++|| |...|+++
T Consensus 168 ~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~-s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 168 DFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN-TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp CHHHHHHHHHHHHHHCS--EEEEECCTTTC------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred CHHHHHHHHHHHHhhCC--EEEEecccccccccccc-cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 34555555566555544 99999999997664321 122234567888999998875555788899988 77778875
No 102
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=8.3e-08 Score=94.51 Aligned_cols=58 Identities=14% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc---cchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM---IDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~---iD~a~lr~GRfd 354 (358)
..|+||||||+|.+.+.+. ..+.++ ..++.+...+..+||++.|.|.. +++++++ ||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~-------~q~~l~----~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~ 253 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTG-------VQTELF----HTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQ 253 (440)
T ss_dssp TTCSEEEEECGGGGSSCHH-------HHHHHH----HHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHH
T ss_pred CCCCEEEEeCcccccCChH-------HHHHHH----HHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hcc
Confidence 4689999999999875421 222332 22222222234566666666765 7889988 774
No 103
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.18 E-value=1.5e-06 Score=80.71 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
..+.||||||+|.+... ..+.|+..|+... .++.+|++||.++.+++++.+ |+.
T Consensus 101 ~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~--~~~~~i~~~~~~~~l~~~l~s--r~~ 154 (319)
T 2chq_A 101 APFKIIFLDEADALTAD-------------AQAALRRTMEMYS--KSCRFILSCNYVSRIIEPIQS--RCA 154 (319)
T ss_dssp CCCEEEEEETGGGSCHH-------------HHHTTGGGTSSSS--SSEEEEEEESCGGGSCHHHHT--TCE
T ss_pred CCceEEEEeCCCcCCHH-------------HHHHHHHHHHhcC--CCCeEEEEeCChhhcchHHHh--hCe
Confidence 45799999999998432 3466777777654 378899999999999999988 664
No 104
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.07 E-value=3.1e-08 Score=97.99 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=45.7
Q ss_pred cCCCCeEEEEecCCCCCcchhhcCCCCCce--EEEecCCC--HHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 5 ERLNNILVIGMTNRRDMIDEALLRPGRLEL--QMEISLPN--EDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 5 ~~~~~V~vI~aTN~p~~LD~Al~R~GRfd~--~I~v~~P~--~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
...+.|+|++|||+++.+|+|+.|+||||. .+++++|+ .++|.+|++.+. ..+++.++..|+|
T Consensus 186 ~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-----------~~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 186 EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-----------LHDLDVANARPQG-- 252 (456)
T ss_dssp CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-----------HHHHHHTC-------
T ss_pred CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-----------HHHHHHHHHhCCC--
Confidence 344457777999999999999999999999 77888885 477888776433 2378999999999
Q ss_pred HHHHHHHHHH
Q psy3629 81 GAELEGLVRA 90 (358)
Q Consensus 81 gadi~~l~~~ 90 (358)
|+||.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999964
No 105
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.06 E-value=1e-05 Score=76.49 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 274 CTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 274 ~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
++.+.+.+. ...+.|++|||+|.+-.. ..|.||..|+... .++++|.+||+|+.|.++++.
T Consensus 93 ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEep~--~~~~~Il~t~~~~~l~~ti~S 157 (334)
T 1a5t_A 93 VREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEEPP--AETWFFLATREPERLLATLRS 157 (334)
T ss_dssp HHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTSCC--TTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcCCC--CCeEEEEEeCChHhCcHHHhh
Confidence 444455544 345789999999998432 3577888887543 478888899999999999987
No 106
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.06 E-value=1.3e-06 Score=83.52 Aligned_cols=56 Identities=7% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC--CCCEEEEEecCCc---cccchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER--LNNILVIGMTNRR---DMIDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~--~~~v~vi~aTn~~---~~iD~a~lr~GRfd 354 (358)
..|.||||||+|.+ . ...+..|+..++.... ..++.+|++||.+ +.+++.+.+ ||.
T Consensus 124 ~~~~vlilDE~~~l--~-----------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~ 184 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL--A-----------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMG 184 (389)
T ss_dssp TCCEEEEEETGGGS--C-----------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHT
T ss_pred CCeEEEEEECcccc--c-----------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCC
Confidence 55899999999998 1 2456777777766532 1478999999998 677777766 655
No 107
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.01 E-value=9.9e-07 Score=80.35 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=27.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
...+|++|| ||| ||.+ |+++... ....+.+++.+.++..
T Consensus 29 ~~~vll~G~--~GtGKt~l---a~~i~~~------------~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGE--RGTGKELI---ASRLHYL------------SSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECC--TTSCHHHH---HHHHHHT------------STTTTSCEEEEEGGGS
T ss_pred CCCEEEECC--CCCcHHHH---HHHHHHh------------cCccCCCeEEEecCCC
Confidence 356999999 999 9999 8888332 2223456777766554
No 108
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=1.8e-06 Score=81.51 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
..+.||||||+|.+.+. ..+.|+..|+.... ++.+|.+||.++.+++++.+ |+.
T Consensus 132 ~~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-------------AQSALRRTMETYSG--VTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTTT--TEEEEEEESCGGGSCHHHHH--HSE
T ss_pred CCceEEEEECCCccCHH-------------HHHHHHHHHHhcCC--CceEEEEeCchhhCcchhhc--cCc
Confidence 45679999999998543 12455555554332 56677789999999999988 765
No 109
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.97 E-value=2.9e-05 Score=72.98 Aligned_cols=100 Identities=21% Similarity=0.269 Sum_probs=78.2
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
++++|++||++..+++++++ ||+..++++.|+.+++..+++.++.... ...++..++.++..+.| +..++.+++
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G-~~r~l~~~l 227 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLN---KTCEEKAALEIAKRSRS-TPRIALRLL 227 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTT-CHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCc-CHHHHHHHH
Confidence 58999999999999999999 9999999999999999999999887653 22355667888887776 567888888
Q ss_pred HHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 89 RAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 89 ~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+.+...+... ....++.+++..++..
T Consensus 228 ~~~~~~a~~~---------------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 228 KRVRDFADVN---------------DEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHT---------------TCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhh---------------cCCccCHHHHHHHHHH
Confidence 8776444321 1234777787777765
No 110
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.97 E-value=1.6e-05 Score=75.55 Aligned_cols=52 Identities=13% Similarity=0.308 Sum_probs=39.2
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr 349 (358)
...+.||||||+|.+-. ...+.|+..++... .++++|++||.++.+++++++
T Consensus 117 ~~~~~vliiDe~~~l~~-------------~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s 168 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSR-------------HSFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILS 168 (373)
T ss_dssp SSSSEEEEEECGGGSCH-------------HHHHHHHHHHHSCC--SSEEEEEEESCGGGSCHHHHT
T ss_pred cCCeEEEEEECcchhcH-------------HHHHHHHHHHhcCC--CceEEEEEeCChHhCcHHHHh
Confidence 45678999999998732 23456666666543 378899999999999999887
No 111
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.91 E-value=1e-05 Score=71.01 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=42.5
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
...+||+|||++.+++.|..... ..+ +|+.+.. .....+-+|.+|+.++.||.++.+ |++.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e----~~r----ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~ 148 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK----IPE----NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHY 148 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC----CCH----HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEE
T ss_pred cCceEEEEEChhhhccCccccch----hHH----HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEE
Confidence 45789999999999987643211 124 4444432 222355678888889999999776 888653
No 112
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.91 E-value=2.5e-06 Score=82.14 Aligned_cols=62 Identities=18% Similarity=0.421 Sum_probs=42.6
Q ss_pred eEEEEccchhhhh-hcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcccc
Q psy3629 287 HIIIFDEIDAICK-ARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEVSE 357 (358)
Q Consensus 287 ~iif~DeiD~~~~-~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~~~ 357 (358)
+++|+||++.+.. .|....+. +. . ..+.+...+||. |.|+++||||+.+ ++++||||+|..+
T Consensus 218 ~~~l~dd~~~~~~~~r~l~~~~-~~-~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~ 280 (377)
T 1svm_A 218 FLVVFEDVKGTGGESRDLPSGQ-GI-N-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNE 280 (377)
T ss_dssp SCEEETTCCCSTTTTTTCCCCS-HH-H-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECS
T ss_pred hHHHHHHHHHHHHHHhhccccC-cc-h-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhH
Confidence 6789999999986 44321111 11 1 224455566763 4578899999999 7999999998754
No 113
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.89 E-value=1.6e-06 Score=85.08 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=0.0
Q ss_pred CCCccCCCCeEEEEe-cCCCCCcchhhcCCCCCceEEEecCCCHH-HHHHHHHH
Q psy3629 1 MDGVERLNNILVIGM-TNRRDMIDEALLRPGRLELQMEISLPNED-GRVQILQI 52 (358)
Q Consensus 1 lDg~~~~~~V~vI~a-TN~p~~LD~Al~R~GRfd~~I~v~~P~~~-~R~~il~~ 52 (358)
|||+.+..+| +++ ||+|+.||+|++|+||||+.|+|++|+.. .|.+|+..
T Consensus 139 ~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 139 AKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------------------------------------
T ss_pred hhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 6888776665 455 99999999999999999999999999987 77777653
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.89 E-value=3e-06 Score=78.71 Aligned_cols=54 Identities=22% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
..+.||||||+|.+... ..+.|+..++... .++.+|++||.++.+++++.+ |+.
T Consensus 106 ~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~--~~~~~il~~~~~~~l~~~l~s--r~~ 159 (323)
T 1sxj_B 106 GKHKIVILDEADSMTAG-------------AQQALRRTMELYS--NSTRFAFACNQSNKIIEPLQS--QCA 159 (323)
T ss_dssp TCCEEEEEESGGGSCHH-------------HHHTTHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred CCceEEEEECcccCCHH-------------HHHHHHHHHhccC--CCceEEEEeCChhhchhHHHh--hce
Confidence 34899999999998432 1334444444332 367888899999999999987 554
No 115
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.88 E-value=2.3e-05 Score=79.06 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=75.7
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcc-----cc--ccccCchhhHHHHHHhcCC-C
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKM-----RS--YKKLADDVNLKELAALTKN-F 79 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~-----~~--~~~~~~~~~l~~la~~t~g-~ 79 (358)
.++++|+|||+++.+|+++++ ||+ .|+|+.|+.++|..|++.++... .. .....++..+..+++.+.+ .
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~ 299 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREA 299 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCS
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhh
Confidence 578999999999999999999 995 79999999999999999877321 10 0011234556666665544 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
..+++++.+..++..+..+.+.... ....++.+++..++..
T Consensus 300 ~vR~L~~~i~~~~~~aa~~~~~~~~---------~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 300 GVRSLERQLAAICRKAAKAIVAEER---------KRITVTEKNLQDFIGK 340 (543)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTTCC---------SCCEECTTTTHHHHCS
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCC---------cceecCHHHHHHHhCC
Confidence 4566666666655555544443221 2346888889888865
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=4.1e-06 Score=77.96 Aligned_cols=54 Identities=26% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
..+.||||||+|.+... ..+.|+..|+... .++.+|++||.++.+++++.+ |+.
T Consensus 109 ~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~--~~~~~i~~~~~~~~l~~~l~s--r~~ 162 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-------------AQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RCA 162 (327)
T ss_dssp CSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--TEE
T ss_pred CCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhcC--CCCeEEEEeCCccccCHHHHh--hCc
Confidence 45789999999998432 2345555555432 367888899999999999887 654
No 117
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.86 E-value=2.3e-06 Score=75.82 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=18.5
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
....++++|| ||+ ||.+ ++++.
T Consensus 51 ~~~~~ll~G~--~G~GKT~l---a~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGP--VKSGRTHL---IHAAC 73 (242)
T ss_dssp SCSEEEEECS--TTSSHHHH---HHHHH
T ss_pred CCCeEEEECC--CCCCHHHH---HHHHH
Confidence 3567999999 999 9999 77773
No 118
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.84 E-value=4.6e-05 Score=72.34 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=76.0
Q ss_pred CCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q psy3629 17 NRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAM 96 (358)
Q Consensus 17 N~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~A~~~a~ 96 (358)
|.++.+++++++ ||.. ++|+.|+.+++.++++..+.... ...++..++.+++.+.+.+++++.++|+.|...|.
T Consensus 238 ~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~---~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 238 QSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEED---VEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCR 311 (368)
T ss_dssp EEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 358899999999 9966 89999999999999998887642 23456678899999986799999999999987775
Q ss_pred HHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 97 NRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 97 ~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.+ +...|+.+|+.+++..
T Consensus 312 ~~---------------~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 312 KR---------------KGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HT---------------TCSSBCHHHHHHHHHH
T ss_pred Hh---------------CCCCCCHHHHHHHHHH
Confidence 44 3457999999999876
No 119
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.78 E-value=3.5e-05 Score=72.03 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=40.7
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCcc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd~ 355 (358)
...|+||||+|.+-.. ..|.||..|+... .++++|.+||.|+.|-+++... +|.+
T Consensus 82 ~~kvviIdead~lt~~-------------a~naLLk~LEep~--~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-------------AANAFLKALEEPP--EYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred CceEEEeccHHHhCHH-------------HHHHHHHHHhCCC--CCeEEEEEECChHhChHHHHce-eEeC
Confidence 3579999999998322 2577888888544 3677888888899999999873 4443
No 120
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.71 E-value=4.2e-05 Score=70.75 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhc-----
Q psy3629 7 LNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALT----- 76 (358)
Q Consensus 7 ~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t----- 76 (358)
..++++|++||.++ .++|++++ ||+..|+|+.|+.+++.+|++.++.... ...++..++.+++.+
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~---~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQN---YQMTPEAETALRAYIGLRRN 241 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhcc
Confidence 34789999998764 36899999 9999999999999999999999998653 223455566666652
Q ss_pred -CC-CCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHh
Q psy3629 77 -KN-FSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHA 126 (358)
Q Consensus 77 -~g-~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~a 126 (358)
.. -+++++.++++.|...+..+.+..... .+. ......++.+||..+
T Consensus 242 ~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~-~~~--~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 242 QPHFANARSIRNALDRARLRQANRLFTASSG-PLD--ARALSTIAEEDIRAS 290 (309)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHHC----CEE--HHHHHEECHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHhccCC-CCC--HHHHhhccHHHhccc
Confidence 22 348999999999998888887753211 111 112345666776653
No 121
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.71 E-value=6.8e-05 Score=69.77 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|++||+++.+++++++ ||+..++++.|+.+++..+++.++.... ...++..++.++..+.| .+.++.++
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~G-~~r~l~~~ 210 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLG---VRITEEAALEIGRRSRG-TMRVAKRL 210 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTT---CCCCHHHHHHHHHHSCS-CHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 358999999999999999999 9999999999999999999999887643 23355678889999877 45778887
Q ss_pred HHHHH
Q psy3629 88 VRAAQ 92 (358)
Q Consensus 88 ~~~A~ 92 (358)
++.+.
T Consensus 211 l~~~~ 215 (324)
T 1hqc_A 211 FRRVR 215 (324)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77664
No 122
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.71 E-value=2.3e-05 Score=74.08 Aligned_cols=59 Identities=22% Similarity=0.447 Sum_probs=36.7
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHcc--C-----CCC------CCCCEEEEEecCCccccchhcCCCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKM--D-----GVE------RLNNILVIGMTNRRDMIDEALLRPG 351 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~l--d-----~~~------~~~~v~vi~aTn~~~~iD~a~lr~G 351 (358)
.++|+|+||++.+.+. ..+.++ ..+..- + +.. ....+.++++||+++.|++++.+
T Consensus 102 ~~~v~~iDE~~~l~~~---------~~e~L~-~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s-- 169 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA---------VEELLY-SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS-- 169 (334)
T ss_dssp TTCEEEEETGGGCCHH---------HHHHHH-HHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--
T ss_pred CCCEEEEcchhhcCHH---------HHHHHH-HHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--
Confidence 4579999999998642 222222 222211 1 000 01246788899999999999998
Q ss_pred CCcc
Q psy3629 352 RLEV 355 (358)
Q Consensus 352 Rfd~ 355 (358)
||..
T Consensus 170 R~~l 173 (334)
T 1in4_A 170 RFGI 173 (334)
T ss_dssp TCSE
T ss_pred hcCc
Confidence 8863
No 123
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.60 E-value=0.00026 Score=61.81 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=75.1
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|++||.+..+++++.+ |+ ..++++.|+.++..++++.++.... ...++..++.+++.+.| .+..+.+
T Consensus 154 ~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~G-~~~~~~~ 226 (250)
T 1njg_A 154 PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEH---IAHEPRALQLLARAAEG-SLRDALS 226 (250)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3578999999999999999998 86 7899999999999999998886532 22355668899999988 8888888
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhh
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al 127 (358)
+++.|...+ ...++.+++.+++
T Consensus 227 ~~~~~~~~~-------------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 227 LTDQAIASG-------------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHTTT-------------------TSSBCHHHHHHHS
T ss_pred HHHHHHhcc-------------------CceecHHHHHHHh
Confidence 888774211 1258888887776
No 124
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.54 E-value=0.00056 Score=63.94 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=70.0
Q ss_pred CCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccc-------------------ccc
Q psy3629 8 NNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY-------------------KKL 63 (358)
Q Consensus 8 ~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~-------------------~~~ 63 (358)
.+++||+|+|..+ .+++++++ ||+.+++++.|+.++|.+|++.+....... ...
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 226 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVT 226 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCB
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCC
Confidence 4678888888443 39999999 999999999999999999999887643110 001
Q ss_pred CchhhHHHHHHhc-------------------CCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHH
Q psy3629 64 ADDVNLKELAALT-------------------KNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFL 124 (358)
Q Consensus 64 ~~~~~l~~la~~t-------------------~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~ 124 (358)
.++..++.+++.+ .|.|.+.+..+++.|...|..+ +...++.+|+.
T Consensus 227 ~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~---------------g~~~v~~~dv~ 291 (331)
T 2r44_A 227 ISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN---------------NRDYVLPEDIK 291 (331)
T ss_dssp CCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT---------------TCSBCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc---------------CCCCCCHHHHH
Confidence 1222334443322 1557777777777665444322 23458888998
Q ss_pred Hhhhc
Q psy3629 125 HALET 129 (358)
Q Consensus 125 ~al~~ 129 (358)
+++..
T Consensus 292 ~~~~~ 296 (331)
T 2r44_A 292 EVAYD 296 (331)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88876
No 125
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.54 E-value=3.9e-05 Score=72.43 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=37.8
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCCc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRfd 354 (358)
.+.|++|||+|.+-.. ..+.|+..|+... ..+.+|.+||.++.+.++++. |+.
T Consensus 110 ~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~--~~~~~il~~n~~~~i~~~i~s--R~~ 162 (340)
T 1sxj_C 110 GFKLIILDEADAMTNA-------------AQNALRRVIERYT--KNTRFCVLANYAHKLTPALLS--QCT 162 (340)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred CceEEEEeCCCCCCHH-------------HHHHHHHHHhcCC--CCeEEEEEecCccccchhHHh--hce
Confidence 4789999999988432 1345555555433 356778889999999999987 553
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.50 E-value=0.00042 Score=60.94 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=72.6
Q ss_pred EEEEecCCCC---CcchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHH
Q psy3629 11 LVIGMTNRRD---MIDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELE 85 (358)
Q Consensus 11 ~vI~aTN~p~---~LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~ 85 (358)
+|+.+++.+. .+++++.+ ||. ..++++.|+.+++.++++.++.... ...++..++.+++.+.| +.+++.
T Consensus 141 ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~g-~~r~l~ 214 (242)
T 3bos_A 141 LIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRG---LQLPEDVGRFLLNRMAR-DLRTLF 214 (242)
T ss_dssp EEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTT---CCCCHHHHHHHHHHTTT-CHHHHH
T ss_pred EEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccC-CHHHHH
Confidence 5555555554 46688988 886 8999999999999999999887542 22356677889998876 889999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhh
Q psy3629 86 GLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALE 128 (358)
Q Consensus 86 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~ 128 (358)
++++.+...+... ...++.+++.+++.
T Consensus 215 ~~l~~~~~~a~~~----------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 215 DVLDRLDKASMVH----------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHH----------------TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHh----------------CCCCcHHHHHHHhh
Confidence 9999887666432 23588888888774
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.46 E-value=0.00044 Score=59.68 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=71.8
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|++||.++.+++++.+ ||. .++++.|+.++..++++.++.... ...++..++.+++.+.| ....+.+
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~g-~~r~l~~ 202 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG---VKITEDGLEALIYISGG-DFRKAIN 202 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT---CCBCHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3568899999999999999999 997 999999999999999998886542 12355677888888876 5555666
Q ss_pred HHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhh
Q psy3629 87 LVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALE 128 (358)
Q Consensus 87 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~ 128 (358)
+++.++..+ ..++.+|+.+++.
T Consensus 203 ~l~~~~~~~--------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 203 ALQGAAAIG--------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHTC--------------------SCBCHHHHHHHHH
T ss_pred HHHHHHhcC--------------------ceecHHHHHHHhc
Confidence 655554221 2588888888775
No 128
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.37 E-value=5.9e-05 Score=64.25 Aligned_cols=26 Identities=15% Similarity=0.018 Sum_probs=20.1
Q ss_pred cccccceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 174 TESSGLVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 174 ~~~~~~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
........++++|| ||+ ||.+ ++++.
T Consensus 33 ~~~~~g~~~~l~G~--~G~GKTtL---~~~i~ 59 (180)
T 3ec2_A 33 FNPEEGKGLTFVGS--PGVGKTHL---AVATL 59 (180)
T ss_dssp CCGGGCCEEEECCS--SSSSHHHH---HHHHH
T ss_pred ccccCCCEEEEECC--CCCCHHHH---HHHHH
Confidence 33334567999999 999 9999 87773
No 129
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.37 E-value=0.00075 Score=63.25 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=70.3
Q ss_pred CeEEEEecCCCC-CcchhhcCCCCCceEEEecCC-CHHHHHHHHHHHHhccc--------------------------cc
Q psy3629 9 NILVIGMTNRRD-MIDEALLRPGRLELQMEISLP-NEDGRVQILQIHTAKMR--------------------------SY 60 (358)
Q Consensus 9 ~V~vI~aTN~p~-~LD~Al~R~GRfd~~I~v~~P-~~~~R~~il~~~l~~~~--------------------------~~ 60 (358)
++++|++||..+ .+++++++ ||+.+++++.| +.++|.+|++..+.... ..
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 264 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP 264 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCC
Confidence 799999999844 89999999 99999999999 67888888876432100 00
Q ss_pred cccCchhhHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 61 KKLADDVNLKELAALTKN---FSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 61 ~~~~~~~~l~~la~~t~g---~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
....++..++.|++.+.+ -+.+.+.++++.|...|..+ +...++.+|+.+++..
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~---------------~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE---------------GATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT---------------TCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc---------------CCCcCCHHHHHHHHHH
Confidence 012234445555555433 25678888887776555432 2335889999888876
No 130
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.32 E-value=0.0014 Score=61.61 Aligned_cols=100 Identities=14% Similarity=0.176 Sum_probs=79.1
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
.+.++++||++..|++++++ ||...+.+++|+.+++.++++...+... ...++..+..+|+++.| +++.+.+++
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G-~~R~a~~ll 223 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKRSRG-TPRIAIRLT 223 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTT-CHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCC-ChHHHHHHH
Confidence 47788999999999999999 9999999999999999999998876542 23355668889999988 567888888
Q ss_pred HHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 89 RAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 89 ~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+.+...+..+ +...++.+++.+++..
T Consensus 224 ~~~~~~a~~~---------------~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 224 KRVRDMLTVV---------------KADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHH---------------TCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHc---------------CCCCcCHHHHHHHHHH
Confidence 8776555432 2335788888888876
No 131
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.32 E-value=0.00029 Score=64.99 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=73.9
Q ss_pred CCeEEEEecCC--------------------------CCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccc-
Q psy3629 8 NNILVIGMTNR--------------------------RDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY- 60 (358)
Q Consensus 8 ~~V~vI~aTN~--------------------------p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~- 60 (358)
.++++|+|||. ...++++++. ||+..+.+++|+.+++..|++.++..+...
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 37889999999 5578899998 999999999999999999999988764211
Q ss_pred -----cccCchhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHhc
Q psy3629 61 -----KKLADDVNLKELAALTK--NFSGAELEGLVRAAQSCAMNRLIKAT 103 (358)
Q Consensus 61 -----~~~~~~~~l~~la~~t~--g~sgadi~~l~~~A~~~a~~r~~~~~ 103 (358)
....++..++.|++..- ....++|+++++.++..++.+.+...
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~ 286 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAG 286 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHT
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 12234566777887654 67889999999999888877766543
No 132
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.31 E-value=0.00055 Score=62.90 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred CCCeEEEEe----cCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHH----HHhcc------ccccccCchhhHHHH
Q psy3629 7 LNNILVIGM----TNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQI----HTAKM------RSYKKLADDVNLKEL 72 (358)
Q Consensus 7 ~~~V~vI~a----TN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~----~l~~~------~~~~~~~~~~~l~~l 72 (358)
..++++|++ ++.+..+++++++ ||+..|+|+.|+.+++.+|++. ++..+ .......++..++.|
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 347888998 5788999999998 9999999999999999999983 22111 000012355667778
Q ss_pred HHhc-------CCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 73 AALT-------KNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 73 a~~t-------~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++.+ ++...+++.++++.+...+..+..... .....|+.+++..++..
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~---------~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN---------GQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCT---------TCEEEECHHHHHHHTCS
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCcccc---------CCEEEEeeHHHHHHHHh
Confidence 8776 256889999999987655443311100 01235899999999976
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=0.00015 Score=68.40 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=36.1
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccchhcCCCCCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRL 353 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~a~lr~GRf 353 (358)
..|.||+|||+|.+-.. . .+.|+..|+... .++.+|.+||.++.+.+++.+ |+
T Consensus 133 ~~~~vlilDE~~~L~~~---------~----~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~ 185 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKD---------A----QAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC 185 (354)
T ss_dssp -CCEEEEEECTTSSCHH---------H----HHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS
T ss_pred CCCeEEEEeCccccCHH---------H----HHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc
Confidence 36789999999995221 1 234444444333 257888899999999999887 65
No 134
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.28 E-value=0.00089 Score=78.31 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=42.6
Q ss_pred CeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcc
Q psy3629 9 NILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKM 57 (358)
Q Consensus 9 ~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~ 57 (358)
++.+|||||.|. .||++++| || ..|+++.|+.+++..|++.++..+
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 589999999994 89999999 99 899999999999999999988765
No 135
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.24 E-value=4.4e-05 Score=77.96 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=38.0
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHc---cCCC------------CCCCCEEEEEecCCc--cccchhc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK---MDGV------------ERLNNILVIGMTNRR--DMIDEAL 347 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~---ld~~------------~~~~~v~vi~aTn~~--~~iD~a~ 347 (358)
.+.+|||||+|.+-+. ..+.++..|-+. +.|. .-..++.||+|||+. +.+|+++
T Consensus 201 ~~gvL~LDEi~~l~~~---------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l 271 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK---------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPAL 271 (604)
T ss_dssp TTSEEEETTGGGSCHH---------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHH
T ss_pred CCCEEEEechhhCCHH---------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHH
Confidence 5679999999997322 233333222211 1111 001368899999988 7899999
Q ss_pred CCCCCCcc
Q psy3629 348 LRPGRLEV 355 (358)
Q Consensus 348 lr~GRfd~ 355 (358)
++ ||++
T Consensus 272 ~~--R~~v 277 (604)
T 3k1j_A 272 RS--RIRG 277 (604)
T ss_dssp HH--HHHH
T ss_pred HH--Hhhc
Confidence 99 9863
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.23 E-value=8.3e-05 Score=71.38 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC--C-CCCEEEEEecCCccc---cc---hhcCC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE--R-LNNILVIGMTNRRDM---ID---EALLR 349 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--~-~~~v~vi~aTn~~~~---iD---~a~lr 349 (358)
..|+||+|||+|.+...+. ....++..|+..++... + ..++.+|++||.++. ++ +.+.+
T Consensus 137 ~~~~llvlDe~~~l~~~~~-------~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~ 204 (412)
T 1w5s_A 137 NHYLLVILDEFQSMLSSPR-------IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204 (412)
T ss_dssp TCEEEEEEESTHHHHSCTT-------SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT
T ss_pred CCeEEEEEeCHHHHhhccC-------cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh
Confidence 5689999999999965421 01234555555444332 1 257899999988773 44 55555
No 137
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.23 E-value=0.00043 Score=68.43 Aligned_cols=86 Identities=22% Similarity=0.292 Sum_probs=65.2
Q ss_pred CCCCeEEEEecCCCC-----CcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccc-cCchhhHHHHHHhcCCC
Q psy3629 6 RLNNILVIGMTNRRD-----MIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKK-LADDVNLKELAALTKNF 79 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~-----~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~-~~~~~~l~~la~~t~g~ 79 (358)
..+++.+|++||.+. .+|+++.| ||. .|.|+.|+.+++..||+.++..+..+.. ..++..+..++..+.+|
T Consensus 288 ~~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 288 ARGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp TSSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 355799999999998 79999999 997 5999999999999999998877543222 23556677777766555
Q ss_pred C-----HHHHHHHHHHHHHH
Q psy3629 80 S-----GAELEGLVRAAQSC 94 (358)
Q Consensus 80 s-----gadi~~l~~~A~~~ 94 (358)
. +...-.++..|+..
T Consensus 365 ~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHHHH
Confidence 4 44667777777643
No 138
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.18 E-value=0.0011 Score=62.58 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=74.6
Q ss_pred CCCeEEEEecCCC---CCcchhhcCCCCCce-EEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcC---CC
Q psy3629 7 LNNILVIGMTNRR---DMIDEALLRPGRLEL-QMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTK---NF 79 (358)
Q Consensus 7 ~~~V~vI~aTN~p---~~LD~Al~R~GRfd~-~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~---g~ 79 (358)
..++.+|++||.+ +.+++++.+ ||.. .++|+.|+.+++.++++..+..... ....++..++.+++.+. |
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G- 240 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFN-PGVLDPDVVPLCAALAAREHG- 240 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHHHHHHSSSC-
T ss_pred CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcc-
Confidence 4578999999998 789999999 9986 8999999999999999988864111 11234455777888776 5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.+..+.++|+.|...+..+ +...++.+++..++..
T Consensus 241 ~~r~~~~~l~~a~~~a~~~---------------~~~~i~~~~v~~a~~~ 275 (387)
T 2v1u_A 241 DARRALDLLRVAGEIAERR---------------REERVRREHVYSARAE 275 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHT---------------TCSCBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc---------------CCCCcCHHHHHHHHHH
Confidence 4667778888776544322 2245788888888766
No 139
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.14 E-value=0.00038 Score=63.31 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=54.4
Q ss_pred CCCeEEEEecCCCCCcch-hhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC----CH
Q psy3629 7 LNNILVIGMTNRRDMIDE-ALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF----SG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~-Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~----sg 81 (358)
..+++||++||.++.+|+ .+.+ ||+..|++|.++ +|.++.+.+... ...++..+..+++.+.|| +.
T Consensus 165 ~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~--~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~~g~i 235 (272)
T 1d2n_A 165 GRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIA--TGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGI 235 (272)
T ss_dssp TCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEE--EHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECH
T ss_pred CCCEEEEEecCChhhcchhhhhc--ccceEEcCCCcc--HHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCccccH
Confidence 346899999999999999 5555 999988875544 444455544332 133567789999999998 56
Q ss_pred HHHHHHHHHHH
Q psy3629 82 AELEGLVRAAQ 92 (358)
Q Consensus 82 adi~~l~~~A~ 92 (358)
.++.++++.|.
T Consensus 236 r~l~~~l~~a~ 246 (272)
T 1d2n_A 236 KKLLMLIEMSL 246 (272)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 66666666553
No 140
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.01 E-value=0.0012 Score=64.73 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=76.7
Q ss_pred CCCeEEEEecCCCCC---cchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRDM---IDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~---LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..+||++.+.|.. +++++++ ||+ ..++++.|+.++|..+++..+.... ...++..++.|+..+.| +.
T Consensus 226 ~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~---~~i~~e~l~~la~~~~g-n~ 299 (440)
T 2z4s_A 226 SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEH---GELPEEVLNFVAENVDD-NL 299 (440)
T ss_dssp TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHT---CCCCTTHHHHHHHHCCS-CH
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCC-CH
Confidence 345666666555665 8899999 997 7899999999999999998886532 12344558889999876 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+++.+++..+...+... ...++.+++.+++..
T Consensus 300 R~l~~~L~~~~~~a~~~----------------~~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 300 RRLRGAIIKLLVYKETT----------------GKEVDLKEAILLLKD 331 (440)
T ss_dssp HHHHHHHHHHHHHHHHS----------------SSCCCHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHH
Confidence 99999998887655321 235889999999987
No 141
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.0015 Score=66.45 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=39.3
Q ss_pred CCeEEEEecCCCC-------------CcchhhcCCCCCc-eEEEecCCCHHHHHHHHHHHHhcc
Q psy3629 8 NNILVIGMTNRRD-------------MIDEALLRPGRLE-LQMEISLPNEDGRVQILQIHTAKM 57 (358)
Q Consensus 8 ~~V~vI~aTN~p~-------------~LD~Al~R~GRfd-~~I~v~~P~~~~R~~il~~~l~~~ 57 (358)
.++.||+|||.++ .|++|+++ ||| ..+..+.|+.+ ...|.++.+...
T Consensus 433 ~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 433 ARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred CceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 4689999999987 89999999 998 56667888888 888888877643
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0038 Score=59.06 Aligned_cols=102 Identities=20% Similarity=0.089 Sum_probs=72.4
Q ss_pred CCeEEEEecCCC---CCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC--CHH
Q psy3629 8 NNILVIGMTNRR---DMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF--SGA 82 (358)
Q Consensus 8 ~~V~vI~aTN~p---~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~--sga 82 (358)
.++.+|++||.+ +.+++++.+ ||...++|++|+.++..++++..+...... ...++..++.+++.+.+. ...
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIK-GTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCT-TSCCSHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhccc-CCcCHHHHHHHHHHHHhccCCHH
Confidence 578999999998 789999999 998899999999999999999987631100 123455677888887633 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 83 ELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 83 di~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.+.++|+.|...+. +...++.+++..++..
T Consensus 240 ~a~~~l~~a~~~a~-----------------~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 240 KAVNLLFRAAQLAS-----------------GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHTT-----------------SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----------------CCCccCHHHHHHHHHH
Confidence 45566666643321 1235777888877766
No 143
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.52 E-value=0.00042 Score=59.87 Aligned_cols=21 Identities=19% Similarity=-0.015 Sum_probs=18.2
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..++++|| ||+ ||.+ ++++..
T Consensus 55 ~~~~l~G~--~GtGKT~l---a~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGS--FGVGKTYL---LAAIAN 76 (202)
T ss_dssp CEEEEECS--TTSSHHHH---HHHHHH
T ss_pred CeEEEECC--CCCCHHHH---HHHHHH
Confidence 68999999 999 9999 877743
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.50 E-value=0.00029 Score=58.49 Aligned_cols=21 Identities=10% Similarity=-0.187 Sum_probs=17.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...++++|| +|+ ||.+ ++++.
T Consensus 36 g~~~~l~G~--~G~GKTtL---~~~i~ 57 (149)
T 2kjq_A 36 GQFIYVWGE--EGAGKSHL---LQAWV 57 (149)
T ss_dssp CSEEEEESS--STTTTCHH---HHHHH
T ss_pred CCEEEEECC--CCCCHHHH---HHHHH
Confidence 446889999 999 9999 77773
No 145
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.46 E-value=0.00026 Score=66.12 Aligned_cols=22 Identities=23% Similarity=-0.044 Sum_probs=18.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..+++|+|| ||+ ||.+ +.++..
T Consensus 152 ~~~lll~G~--~GtGKT~L---a~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGD--MGIGKSYL---LAAMAH 174 (308)
T ss_dssp CCEEEEECS--TTSSHHHH---HHHHHH
T ss_pred CceEEEECC--CCCCHHHH---HHHHHH
Confidence 578999999 999 9999 888743
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.34 E-value=0.014 Score=54.76 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=71.8
Q ss_pred CCCeEEEEecCCC---CCcchhhcCCCCCc-eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcC---CC
Q psy3629 7 LNNILVIGMTNRR---DMIDEALLRPGRLE-LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTK---NF 79 (358)
Q Consensus 7 ~~~V~vI~aTN~p---~~LD~Al~R~GRfd-~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~---g~ 79 (358)
..++.+|++||.+ ..+++.+.+ ||. ..|+++.++.++..++++..+..... ....++..++.+++.+. |
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G- 236 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHG- 236 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTC-
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcC-
Confidence 4579999999987 467888888 876 59999999999999999987753211 11234555677777776 5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.+..+.++|..|...+..+ +...++.+++..++..
T Consensus 237 ~~r~~~~ll~~a~~~a~~~---------------~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERM---------------KDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHT---------------TCSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc---------------CCCccCHHHHHHHHHH
Confidence 4556666777776544321 2335788888887766
No 147
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.33 E-value=0.024 Score=53.20 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=63.7
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|++||.+..+++++.+ |+ ..++++.|+.++...+++.+++..+ ...++..++.+++.+.| +..++.+
T Consensus 147 ~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~---~~~~~~a~~~l~~~~~G-~~r~~~~ 219 (373)
T 1jr3_A 147 PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEH---IAHEPRALQLLARAAEG-SLRDALS 219 (373)
T ss_dssp CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT---CCBCHHHHHHHHHHSSS-CHHHHHH
T ss_pred CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHCCC-CHHHHHH
Confidence 3578999999999999999998 87 7999999999999999998886542 12345567889999987 6777888
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
+++.+.
T Consensus 220 ~l~~~~ 225 (373)
T 1jr3_A 220 LTDQAI 225 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877664
No 148
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.32 E-value=0.013 Score=54.37 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCCeEEEEecCCCC---CcchhhcCCCCCc--eEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCH
Q psy3629 7 LNNILVIGMTNRRD---MIDEALLRPGRLE--LQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 7 ~~~V~vI~aTN~p~---~LD~Al~R~GRfd--~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sg 81 (358)
.+..+|++++|.|+ .+++++.+ ||+ ..+++++ +.++|..+++.++...+ ...++..++.|++.+ -..
T Consensus 130 ~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~---~~l~~~~l~~l~~~~--g~~ 201 (324)
T 1l8q_A 130 LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFN---LELRKEVIDYLLENT--KNV 201 (324)
T ss_dssp TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTT---CCCCHHHHHHHHHHC--SSH
T ss_pred CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhC--CCH
Confidence 34577888888777 68999999 997 7899999 99999999999987543 233566688899998 477
Q ss_pred HHHHHHHHHHHHH
Q psy3629 82 AELEGLVRAAQSC 94 (358)
Q Consensus 82 adi~~l~~~A~~~ 94 (358)
+++.+++..+...
T Consensus 202 r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 202 REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 8888888876644
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.25 E-value=0.013 Score=55.22 Aligned_cols=104 Identities=12% Similarity=0.026 Sum_probs=76.7
Q ss_pred CCeEEEEecCCC---CCcchhhcCCCCCce-EEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCC----
Q psy3629 8 NNILVIGMTNRR---DMIDEALLRPGRLEL-QMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNF---- 79 (358)
Q Consensus 8 ~~V~vI~aTN~p---~~LD~Al~R~GRfd~-~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~---- 79 (358)
.++.+|++||.+ +.+++.+.+ ||.. .++|++++.++..++++..+...... ...++..++.+++.+.+.
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 234 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPLD 234 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTTC
T ss_pred CCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccCC
Confidence 578999999998 678888888 8875 89999999999999999887642111 234566788899988422
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 80 ----SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 80 ----sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
....+.++|+.|...+..+ +...++.+++..++..
T Consensus 235 ~~~G~~r~~~~~l~~a~~~a~~~---------------~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 235 TNRGDARLAIDILYRSAYAAQQN---------------GRKHIAPEDVRKSSKE 273 (389)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHT---------------TCSSCCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHh---------------CCCCcCHHHHHHHHHH
Confidence 5677788888776555432 2245788888888776
No 150
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.13 E-value=0.0063 Score=58.43 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=27.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDV 234 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
..++++|+ +|+ |+.+ |+.+... ......+|+.+++..+
T Consensus 161 ~~vli~Ge--~GtGK~~l---Ar~ih~~------------s~r~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 161 CPVLITGE--SGVGKEVV---ARLIHKL------------SDRSKEPFVALNVASI 199 (387)
T ss_dssp SCEEEECS--TTSSHHHH---HHHHHHH------------STTTTSCEEEEETTTS
T ss_pred CCeEEecC--CCcCHHHH---HHHHHHh------------cCCCCCCeEEEecCCC
Confidence 45799999 999 9999 7777321 3445567888887665
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.026 Score=52.50 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=70.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|.+||.+..+++++.+ |+. .++++.|+.++...+++..+.... ...++..++.+++.+.| ....+.++
T Consensus 162 ~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~---~~i~~~~l~~l~~~~~G-~~r~~~~~ 234 (353)
T 1sxj_D 162 GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQEN---VKCDDGVLERILDISAG-DLRRGITL 234 (353)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTT---CCCCHHHHHHHHHHTSS-CHHHHHHH
T ss_pred CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 456778899999999999999 985 899999999999999998876432 22356678889998887 35555555
Q ss_pred HHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 88 VRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 88 ~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
++.+...+-+. . ....++.+|+.+++..
T Consensus 235 l~~~~~~~~~~----~----------~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 235 LQSASKGAQYL----G----------DGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHTHHHHHHH----C----------SCCCCCHHHHHHHHTC
T ss_pred HHHHHHhcCCC----c----------cCccccHHHHHHHhCC
Confidence 55554322110 0 0014777888777654
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.07 E-value=0.025 Score=51.73 Aligned_cols=77 Identities=13% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|++||.+..+++++.+ |+. .++|+.|+.+++..+++.++...+ ...++..++.++..+.| +.+.+.+.
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~---~~i~~~~l~~l~~~~~G-~~r~~~~~ 203 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEG---VKITEDGLEALIYISGG-DFRKAINA 203 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTC---CCBCHHHHHHHHHTTTT-CHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 578999999999999999999 885 899999999999999998887542 22355667888877765 44444444
Q ss_pred HHHH
Q psy3629 88 VRAA 91 (358)
Q Consensus 88 ~~~A 91 (358)
++.+
T Consensus 204 l~~~ 207 (319)
T 2chq_A 204 LQGA 207 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 153
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.05 E-value=0.031 Score=54.68 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=74.1
Q ss_pred CCeEEEEec--CCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcccc----ccccCchhhHHHHHHhcCCCCH
Q psy3629 8 NNILVIGMT--NRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRS----YKKLADDVNLKELAALTKNFSG 81 (358)
Q Consensus 8 ~~V~vI~aT--N~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~----~~~~~~~~~l~~la~~t~g~sg 81 (358)
+.+++|++| |....+++++++ |+. .+.++.|+.+++..+++..+..... .....++..++.|++.+.| +.
T Consensus 133 ~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~ 208 (447)
T 3pvs_A 133 GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DA 208 (447)
T ss_dssp TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CH
T ss_pred CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CH
Confidence 457788777 555689999999 985 7889999999999999999876321 1122356678889988776 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 82 AELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 82 adi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
+++.++++.+...+.. . ..+...|+.+++.+++..
T Consensus 209 R~lln~Le~a~~~a~~------~-------~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 209 RRALNTLEMMADMAEV------D-------DSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHHHHSCB------C-------TTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccc------c-------cCCCCccCHHHHHHHHhh
Confidence 7777777776543210 0 001245888888888876
No 154
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=95.88 E-value=0.0018 Score=63.62 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=39.5
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC-------CCCCCCCEEEEEecCCcc-----------ccchhcC
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD-------GVERLNNILVIGMTNRRD-----------MIDEALL 348 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld-------~~~~~~~v~vi~aTn~~~-----------~iD~a~l 348 (358)
-|+|+|||+.+-+. ..+.||.-|+ |..-..++.||||+|..+ .|.+++|
T Consensus 302 Gvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alL 368 (506)
T 3f8t_A 302 GILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFL 368 (506)
T ss_dssp SEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHH
T ss_pred CeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHh
Confidence 58999999997322 3455555554 331113689999999876 7888999
Q ss_pred CCCCCcccc
Q psy3629 349 RPGRLEVSE 357 (358)
Q Consensus 349 r~GRfd~~~ 357 (358)
- |||+..
T Consensus 369 D--RFDLi~ 375 (506)
T 3f8t_A 369 S--HFDLIA 375 (506)
T ss_dssp T--TCSEEE
T ss_pred h--heeeEE
Confidence 9 999753
No 155
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.65 E-value=0.0079 Score=67.63 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=66.3
Q ss_pred HhhhccccccccccccCCCCchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC----CCCcchhhHHHHHHHHccCC
Q psy3629 249 AELSLHQDIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA----GGNTGVHDTVVNQLLSKMDG 324 (358)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~----~~~~~~~~~~~~~lL~~ld~ 324 (358)
|...+++ +.++.-..-...|.++..+...+|..+|++|++|-+.+|.+...-. +++-+.+.|+++|-|..|.+
T Consensus 1476 ~~~~Gv~---~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~ 1552 (1706)
T 3cmw_A 1476 ARKLGVD---IDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1552 (1706)
T ss_dssp HHHTTCC---GGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHH
T ss_pred HHHcCCC---HHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHH
Confidence 4444444 5566656667779999999999999999999999999999875332 23445678999999999999
Q ss_pred CCCCCCEEEEEecCCccc
Q psy3629 325 VERLNNILVIGMTNRRDM 342 (358)
Q Consensus 325 ~~~~~~v~vi~aTn~~~~ 342 (358)
.-...++.+|.+.-..+.
T Consensus 1553 ~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1553 NLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHHHHTCEEEEEECBC--
T ss_pred HHHhCCcEEEEeeccccc
Confidence 765567777766544433
No 156
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.41 E-value=0.0035 Score=71.34 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=52.0
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC----CCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA----GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~----~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
..+|...+.+...++..+|++|+||++..+.+.+... ..+-+...|.++++|.+|.+.....++++|.+...++.+
T Consensus 1142 d~~e~~~~i~~~l~~~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~~~~w 1221 (2050)
T 3cmu_A 1142 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI 1221 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECT
T ss_pred cchHHHHHHHHHHHHhCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcchh
Confidence 3567777777777788899999999999997654211 122345778888888887775444566666654443443
No 157
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.41 E-value=0.0082 Score=57.28 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=43.8
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCC----CcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGG----NTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~----~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
.+.|.....+-...+...+.+|+||.+..+.+.....+. +.+...|.+++++..|.++-...++.||++
T Consensus 135 ~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~ 207 (366)
T 1xp8_A 135 DNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFI 207 (366)
T ss_dssp SSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 356776666666667788999999999999853221111 111334677888888876644445666554
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.38 E-value=0.073 Score=48.63 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=58.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGL 87 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l 87 (358)
.++.+|++||.+..+++++.+ |+. .++|+.|+.++..++++..+.... ...++..++.+++.+.| +...+.++
T Consensus 136 ~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~G-~~r~a~~~ 208 (323)
T 1sxj_B 136 NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLED---VKYTNDGLEAIIFTAEG-DMRQAINN 208 (323)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHT---CCBCHHHHHHHHHHHTT-CHHHHHHH
T ss_pred CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 568888999999999999998 875 899999999999999998876532 12345667888888876 34444444
Q ss_pred HHHH
Q psy3629 88 VRAA 91 (358)
Q Consensus 88 ~~~A 91 (358)
++.+
T Consensus 209 l~~~ 212 (323)
T 1sxj_B 209 LQST 212 (323)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 159
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.26 E-value=0.058 Score=50.33 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=60.6
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCc-hhhHHHHHHhcCCCCHHHHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLAD-DVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~-~~~l~~la~~t~g~sgadi~~ 86 (358)
.++.+|.+||.++.+.+++.+ |+ ..+.|+.|+.++...+++..++..+ ...+ +..++.+++.+.| +.+++.+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~l~~i~~~~~G-~~r~a~~ 235 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNER---IQLETKDILKRIAQASNG-NLRVSLL 235 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHT---CEECCSHHHHHHHHHHTT-CHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcC---CCCCcHHHHHHHHHHcCC-CHHHHHH
Confidence 468889999999999999998 88 8999999999999999998886542 1223 5667889988876 5555555
Q ss_pred HHHHHH
Q psy3629 87 LVRAAQ 92 (358)
Q Consensus 87 l~~~A~ 92 (358)
+++.+.
T Consensus 236 ~l~~~~ 241 (354)
T 1sxj_E 236 MLESMA 241 (354)
T ss_dssp HHTHHH
T ss_pred HHHHHH
Confidence 555443
No 160
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.21 E-value=0.032 Score=55.38 Aligned_cols=86 Identities=15% Similarity=0.109 Sum_probs=53.9
Q ss_pred eEEEEecCCCCC---cchhhcCCCCCceEEEecCCCH-HHHHHHHHHHHhccccc--------------------cccCc
Q psy3629 10 ILVIGMTNRRDM---IDEALLRPGRLELQMEISLPNE-DGRVQILQIHTAKMRSY--------------------KKLAD 65 (358)
Q Consensus 10 V~vI~aTN~p~~---LD~Al~R~GRfd~~I~v~~P~~-~~R~~il~~~l~~~~~~--------------------~~~~~ 65 (358)
.++|+|||.+.. ..+|+++ ||...++++.|+. +++..|++.+....... ....+
T Consensus 150 ~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~ 227 (500)
T 3nbx_X 150 RLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP 227 (500)
T ss_dssp CEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC
T ss_pred hhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc
Confidence 356888886332 3459999 9999999999986 78888887654211000 00112
Q ss_pred hhhHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Q psy3629 66 DVNLKELAALT---------KNFSGAELEGLVRAAQSCAMN 97 (358)
Q Consensus 66 ~~~l~~la~~t---------~g~sgadi~~l~~~A~~~a~~ 97 (358)
+.-.+.+++.. .|.|++.+..+++.|...|..
T Consensus 228 d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l 268 (500)
T 3nbx_X 228 DHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFF 268 (500)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhh
Confidence 22334444433 578888888888777555443
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.01 E-value=0.051 Score=49.79 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=59.3
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++.+|++||.++.+++++.+ |+. .+.|+.|+.++...+++..+.... ...++..++.+++.+.| +...+.+
T Consensus 138 ~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~g-~~r~~~~ 210 (327)
T 1iqp_A 138 SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG---LELTEEGLQAILYIAEG-DMRRAIN 210 (327)
T ss_dssp TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT---CEECHHHHHHHHHHHTT-CHHHHHH
T ss_pred CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHCCC-CHHHHHH
Confidence 3568889999999999999998 886 899999999999999998876542 12355667888888876 5555555
Q ss_pred HHHHH
Q psy3629 87 LVRAA 91 (358)
Q Consensus 87 l~~~A 91 (358)
+++.+
T Consensus 211 ~l~~~ 215 (327)
T 1iqp_A 211 ILQAA 215 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 162
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.01 E-value=0.014 Score=55.41 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=44.5
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchhhhhhc---CCCCCC-cchhhHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDAICKAR---GTAGGN-TGVHDTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r---~~~~~~-~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
...|..+..+-...+...|.+|++|.+..+++.. +..++. -....|.++++|..|..+-...++.||.+ |+.
T Consensus 122 ~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i-nqv 197 (356)
T 3hr8_A 122 DHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT-NQI 197 (356)
T ss_dssp SSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE-EES
T ss_pred cCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE-eee
Confidence 3456666555555556789999999999998621 111111 11346888888888887744445555543 444
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.97 E-value=0.0096 Score=56.41 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=40.5
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCC----CCCcchhhHHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTA----GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~----~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
+.|..+..+...++...|.+|++|++..+.+..... +.+.+...|.++++|..|.++-...++.||.++
T Consensus 123 ~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~in 195 (349)
T 2zr9_A 123 TGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 195 (349)
T ss_dssp SHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 456666666666777889999999999998532111 111112345667777776544222244555543
No 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.92 E-value=0.037 Score=65.73 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCC--------CCCCEEEEEecCCc-----cccchhcCC
Q psy3629 283 NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVE--------RLNNILVIGMTNRR-----DMIDEALLR 349 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~--------~~~~v~vi~aTn~~-----~~iD~a~lr 349 (358)
....+|+|+||++--... .- +.+..-.++.|++.. .|+. .-.++.+|||.|.| ..|+++++|
T Consensus 1372 ~Gk~~VlFiDDiNmp~~D--~y--GtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r 1446 (3245)
T 3vkg_A 1372 LGKWLVVFCDEINLPSTD--KY--GTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR 1446 (3245)
T ss_dssp TTCEEEEEETTTTCCCCC--TT--SCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred CCceEEEEecccCCCCcc--cc--ccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh
Confidence 356689999999863222 11 222445667777653 1221 12468899999988 469999999
Q ss_pred CCCCccc
Q psy3629 350 PGRLEVS 356 (358)
Q Consensus 350 ~GRfd~~ 356 (358)
||-+.
T Consensus 1447 --~F~vi 1451 (3245)
T 3vkg_A 1447 --HAPIL 1451 (3245)
T ss_dssp --TCCEE
T ss_pred --hceEE
Confidence 98654
No 165
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.86 E-value=0.034 Score=51.39 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccc----cccccCch-hhHHHHHHhcCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMR----SYKKLADD-VNLKELAALTKN 78 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~----~~~~~~~~-~~l~~la~~t~g 78 (358)
.++.+|++||.+..+++++++ || ..++|+.|+.++|.++++.++.... ......++ ..++.+++.+.|
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred CCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 468899999999999999999 99 5799999999998887766554321 11112234 567778887665
No 166
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.77 E-value=0.023 Score=53.09 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred CchhHH-HHHH--hhcCCCCCceEEEEccchhhhhhcCCCC---C-Ccc--hhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 268 NTSEFL-CTII--LEAGPNSGLHIIIFDEIDAICKARGTAG---G-NTG--VHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 268 ~~~e~~-~~~~--f~~a~~~~p~iif~DeiD~~~~~r~~~~---~-~~~--~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
...|.. ...+ ....++.+|.+|++|=|.++.+.-.-.+ + +-+ ...|.++++|..|-++-...++.||. ||
T Consensus 91 ~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~-tN 169 (333)
T 3io5_A 91 QSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA-IN 169 (333)
T ss_dssp SBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEE-EE
T ss_pred CCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE-EC
Confidence 355555 3322 2225778999999999999985321111 1 111 45688899888877664434554443 34
Q ss_pred Ccc
Q psy3629 339 RRD 341 (358)
Q Consensus 339 ~~~ 341 (358)
+..
T Consensus 170 QV~ 172 (333)
T 3io5_A 170 HTY 172 (333)
T ss_dssp EC-
T ss_pred Cee
Confidence 433
No 167
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.15 E-value=0.027 Score=49.22 Aligned_cols=21 Identities=0% Similarity=-0.154 Sum_probs=17.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
..+++++|| ||| ||.+ |.++.
T Consensus 58 kn~ili~GP--PGtGKTt~---a~ala 79 (212)
T 1tue_A 58 KNCLVFCGP--ANTGKSYF---GMSFI 79 (212)
T ss_dssp CSEEEEESC--GGGCHHHH---HHHHH
T ss_pred ccEEEEECC--CCCCHHHH---HHHHH
Confidence 356999999 999 9998 87773
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.84 E-value=0.22 Score=47.07 Aligned_cols=103 Identities=9% Similarity=0.029 Sum_probs=70.7
Q ss_pred CCeEEEEecCCCC---Ccc---hhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcC----
Q psy3629 8 NNILVIGMTNRRD---MID---EALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTK---- 77 (358)
Q Consensus 8 ~~V~vI~aTN~p~---~LD---~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~---- 77 (358)
.++.+|++||.++ .++ +.+.+ ||...++++.++.++..++++..+...... ...++..+..+++.|.
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGT
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhcc
Confidence 6799999998776 345 67777 777779999999999999998776532111 1234566788888888
Q ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 78 --NFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 78 --g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
| .+..+..++..|...+..+ ....++.+++..++..
T Consensus 255 ~~G-~p~~~~~l~~~a~~~a~~~---------------~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 255 GDG-SARRAIVALKMACEMAEAM---------------GRDSLSEDLVRKAVSE 292 (412)
T ss_dssp SCC-CHHHHHHHHHHHHHHHHHT---------------TCSSCCHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHHHHHc---------------CCCCCCHHHHHHHHHH
Confidence 7 4566777777765444322 1234666777766654
No 169
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=93.65 E-value=0.027 Score=53.64 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=16.5
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++|+ +|| |+.+ |+.+
T Consensus 153 ~~vli~Ge--sGtGKe~l---Ar~i 172 (368)
T 3dzd_A 153 APVLITGE--SGTGKEIV---ARLI 172 (368)
T ss_dssp SCEEEECC--TTSSHHHH---HHHH
T ss_pred hhheEEeC--CCchHHHH---HHHH
Confidence 45899999 999 9999 8777
No 170
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.33 E-value=0.09 Score=53.36 Aligned_cols=104 Identities=19% Similarity=0.309 Sum_probs=68.2
Q ss_pred CeEEEEecCCC--CCcchhhcCCCCCc---eEEEecC--C-CHHHHHHHHHHHHhcccc--ccccCchhhHHHHHHhc--
Q psy3629 9 NILVIGMTNRR--DMIDEALLRPGRLE---LQMEISL--P-NEDGRVQILQIHTAKMRS--YKKLADDVNLKELAALT-- 76 (358)
Q Consensus 9 ~V~vI~aTN~p--~~LD~Al~R~GRfd---~~I~v~~--P-~~~~R~~il~~~l~~~~~--~~~~~~~~~l~~la~~t-- 76 (358)
++.||+|||+. ..+++++++ ||+ ..++++. | +.+....+++.+.+.... .....++..+..|.+.+
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r 329 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQK 329 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhh
Confidence 68899999987 689999999 997 4565532 2 345566666555443321 11123445566666543
Q ss_pred -CCC------CHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 77 -KNF------SGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 77 -~g~------sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.|- +.+++.++++.|...|..+ ....++.+|+.+|+..
T Consensus 330 ~~g~r~~l~~~~R~l~~llr~A~~~A~~~---------------~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 330 RAGRKGHLTLRLRDLGGIVRAAGDIAVKK---------------GKKYVEREDVIEAVKM 374 (604)
T ss_dssp TTCSTTEEECCHHHHHHHHHHHHHHHHHT---------------TCSSBCHHHHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHHHHHHHhc---------------CcccccHHHHHHHHHh
Confidence 553 7899999999886554322 2346888999998864
No 171
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.23 E-value=0.26 Score=58.72 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=40.2
Q ss_pred CCeEEEEecCCC-----CCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhcc
Q psy3629 8 NNILVIGMTNRR-----DMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKM 57 (358)
Q Consensus 8 ~~V~vI~aTN~p-----~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~ 57 (358)
.++.+|||.|.| ..|+++++| || ..++++.|+.++-..|+..++..+
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLR--HA-PILLVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHHHH
Confidence 468899999998 469999999 99 559999999999999988776544
No 172
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.64 E-value=0.2 Score=47.04 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=53.3
Q ss_pred cchhhcCCCCCceEEEecCCCHHHHHHHHHH----HHhcccc------ccccCchhhHHHHHHh--cCCCCHHHHHHHHH
Q psy3629 22 IDEALLRPGRLELQMEISLPNEDGRVQILQI----HTAKMRS------YKKLADDVNLKELAAL--TKNFSGAELEGLVR 89 (358)
Q Consensus 22 LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~----~l~~~~~------~~~~~~~~~l~~la~~--t~g~sgadi~~l~~ 89 (358)
+.|+++. ||+..+.+++|+.+++.+|++. ++..+.. .....++..++.|++. ...+...+|+++++
T Consensus 239 ~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie 316 (363)
T 3hws_A 239 LIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVE 316 (363)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred CCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHH
Confidence 6788887 9999999999999999999986 3332210 0011245556777763 34566789999999
Q ss_pred HHHHHHHHH
Q psy3629 90 AAQSCAMNR 98 (358)
Q Consensus 90 ~A~~~a~~r 98 (358)
.++..++.+
T Consensus 317 ~~~~~~l~~ 325 (363)
T 3hws_A 317 AALLDTMYD 325 (363)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 988777655
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.63 E-value=0.079 Score=45.58 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=18.9
Q ss_pred HHHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 273 LCTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 273 ~~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
.+..+-..+++ .|.+|+|||+..+...
T Consensus 94 ~~~~~~~l~~~-~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 94 VIGSLKKTVDS-NFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHHHHHHCCT-TEEEEEEECCCCCTTG
T ss_pred HHHHHHHHhhc-CCCEEEEcCcHHHhhh
Confidence 44444444544 7999999999998644
No 174
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.51 Score=43.87 Aligned_cols=50 Identities=6% Similarity=0.108 Sum_probs=41.7
Q ss_pred CCCCeEEEEecCCCCC----cchhhcCCCCCc-eEEEecCCCHHHHHHHHHHHHhcc
Q psy3629 6 RLNNILVIGMTNRRDM----IDEALLRPGRLE-LQMEISLPNEDGRVQILQIHTAKM 57 (358)
Q Consensus 6 ~~~~V~vI~aTN~p~~----LD~Al~R~GRfd-~~I~v~~P~~~~R~~il~~~l~~~ 57 (358)
...+++||+++|..+. |+++++. ||. ..|+|+..+.++..+|++..++..
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 3457999999999875 5666677 887 689999999999999999888764
No 175
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.06 E-value=0.035 Score=51.78 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhh--HHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 273 LCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHD--TVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 273 ~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
.+..+.+..++ ..|.+|+||.+..+........+. ..+ ..+++++..|..+-...++.||.+
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGREN--LAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCccc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 34455555555 789999999999998542111111 222 356777777766543334555554
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=91.91 E-value=0.31 Score=45.33 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=54.3
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEG 86 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~ 86 (358)
..++++|.+||.++.|.+++++ |. ..++|+.|+.++..++++... ..++..+..++..+.| +...+.+
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G-~~r~a~~ 203 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAG-SPGAALA 203 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTT-CHHHHHH
T ss_pred CCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3578999999999999999999 88 579999999999998888654 1234566778887776 4444444
Q ss_pred HHHH
Q psy3629 87 LVRA 90 (358)
Q Consensus 87 l~~~ 90 (358)
+++.
T Consensus 204 ~l~~ 207 (334)
T 1a5t_A 204 LFQG 207 (334)
T ss_dssp TTSS
T ss_pred Hhcc
Confidence 4443
No 177
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.64 E-value=0.052 Score=51.49 Aligned_cols=67 Identities=19% Similarity=0.309 Sum_probs=37.3
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCC---C-CcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAG---G-NTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~---~-~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
.|.....+-..++...+.+|+||.+..+.......+ + ..+...|.++++|..|.++-...++.||++
T Consensus 126 ~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~ 196 (356)
T 1u94_A 126 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 196 (356)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 344443333334456789999999999985322111 1 111234567777777766533345666644
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.18 E-value=0.094 Score=48.35 Aligned_cols=19 Identities=26% Similarity=-0.120 Sum_probs=16.4
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++|| +|+ ||.+ ++.+
T Consensus 32 ~~v~i~G~--~G~GKT~L---l~~~ 51 (350)
T 2qen_A 32 PLTLLLGI--RRVGKSSL---LRAF 51 (350)
T ss_dssp SEEEEECC--TTSSHHHH---HHHH
T ss_pred CeEEEECC--CcCCHHHH---HHHH
Confidence 46899999 999 9999 7666
No 179
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.48 E-value=0.3 Score=44.97 Aligned_cols=19 Identities=11% Similarity=-0.111 Sum_probs=16.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++|| +|+ ||.+ ++.+
T Consensus 31 ~~v~i~G~--~G~GKT~L---~~~~ 50 (357)
T 2fna_A 31 PITLVLGL--RRTGKSSI---IKIG 50 (357)
T ss_dssp SEEEEEES--TTSSHHHH---HHHH
T ss_pred CcEEEECC--CCCCHHHH---HHHH
Confidence 36899999 999 9999 6665
No 180
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.36 E-value=0.27 Score=46.37 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=60.8
Q ss_pred cchhhcCCCCCceEEEecCCCHHHHHHHHHH----HHhccc------cccccCchhhHHHHHHhcC--CCCHHHHHHHHH
Q psy3629 22 IDEALLRPGRLELQMEISLPNEDGRVQILQI----HTAKMR------SYKKLADDVNLKELAALTK--NFSGAELEGLVR 89 (358)
Q Consensus 22 LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~----~l~~~~------~~~~~~~~~~l~~la~~t~--g~sgadi~~l~~ 89 (358)
+.|+++. ||+..+.|+.++.++...+++. ++..+. ......++..++.|++.+. ....+++.+++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 4456666 8888999999999999998862 222110 0001234556677777643 467899999999
Q ss_pred HHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhhhc
Q psy3629 90 AAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHALET 129 (358)
Q Consensus 90 ~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al~~ 129 (358)
.++..++.+..... .....|+.+++..+.+.
T Consensus 334 ~~~~~~~~~~~~~~---------~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 334 DFCLDIMFDLPKLK---------GSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHTGGGGT---------TSEEEECHHHHTTSSCC
T ss_pred HHHHHHHhhccCCC---------CCEEEEeHHHhcCCCCc
Confidence 98877766533221 12345777777665543
No 181
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.21 E-value=0.34 Score=41.06 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=14.2
Q ss_pred hhcCCCCCceEEEEccchhh
Q psy3629 278 LEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~ 297 (358)
++.++ ..+.+|||||+..+
T Consensus 70 ~~~~~-~~~dvviIDE~Q~~ 88 (184)
T 2orw_A 70 RKYIE-EDTRGVFIDEVQFF 88 (184)
T ss_dssp GGGCC-TTEEEEEECCGGGS
T ss_pred HHHhc-CCCCEEEEECcccC
Confidence 55554 35689999999875
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.08 E-value=1.4 Score=43.58 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=46.5
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
.+++|+++.....+++ + + |+...+.|+.|+.+++.++++..+.... ...++..++.|++.+.| +++.++
T Consensus 181 ~iIli~~~~~~~~l~~-l-~--~r~~~i~f~~~~~~~~~~~L~~i~~~~~---~~i~~~~l~~la~~s~G----diR~~i 249 (516)
T 1sxj_A 181 PLILICNERNLPKMRP-F-D--RVCLDIQFRRPDANSIKSRLMTIAIREK---FKLDPNVIDRLIQTTRG----DIRQVI 249 (516)
T ss_dssp CEEEEESCTTSSTTGG-G-T--TTSEEEECCCCCHHHHHHHHHHHHHHHT---CCCCTTHHHHHHHHTTT----CHHHHH
T ss_pred CEEEEEcCCCCccchh-h-H--hceEEEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC----cHHHHH
Confidence 4555555554455554 4 3 5567999999999999999988775432 12345568889988765 555544
Q ss_pred H
Q psy3629 89 R 89 (358)
Q Consensus 89 ~ 89 (358)
.
T Consensus 250 ~ 250 (516)
T 1sxj_A 250 N 250 (516)
T ss_dssp H
T ss_pred H
Confidence 4
No 183
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.45 E-value=0.16 Score=46.94 Aligned_cols=64 Identities=11% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEe
Q psy3629 273 LCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGM 336 (358)
Q Consensus 273 ~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~a 336 (358)
.+..+.+..++ ..+.+|+||.+..+........+........+++++..|..+-...++.||.+
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 34445555555 77899999999999854211111100112356777777776643345555554
No 184
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.10 E-value=0.076 Score=49.93 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=34.7
Q ss_pred HHHhhcCCC--CCceEEEEccchhhhhhcCCCCCCcchhh--HHHHHHHHccCCCCCCCCEEEEEec
Q psy3629 275 TIILEAGPN--SGLHIIIFDEIDAICKARGTAGGNTGVHD--TVVNQLLSKMDGVERLNNILVIGMT 337 (358)
Q Consensus 275 ~~~f~~a~~--~~p~iif~DeiD~~~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aT 337 (358)
..+.+..++ ..+.+|+||.+..+....- .+.. ...+ ..+++++..|..+-...++.||.++
T Consensus 207 ~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~-~~~g-~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 207 DYVAAKFHEEAGIFKLLIIDSIMALFRVDF-SGRG-ELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp HHHHHHHHHSCSSEEEEEEETSGGGHHHHC-CGGG-CHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHhcCCCccEEEEechHHHHHHHh-cccc-cHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 334444554 6789999999999985421 1101 1222 2466776666665433455555544
No 185
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.08 E-value=0.096 Score=45.80 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=19.2
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
+..+.+..+...|.+|+|||+-.+...
T Consensus 108 ~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 108 LYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 333455555578999999999998754
No 186
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.03 E-value=0.18 Score=46.51 Aligned_cols=83 Identities=18% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCeEEEEecCCC-------CCcchhhcCCCCCceEEEecCCCHHHH----HHHHHHHHhccccc----cccCchhhHHHH
Q psy3629 8 NNILVIGMTNRR-------DMIDEALLRPGRLELQMEISLPNEDGR----VQILQIHTAKMRSY----KKLADDVNLKEL 72 (358)
Q Consensus 8 ~~V~vI~aTN~p-------~~LD~Al~R~GRfd~~I~v~~P~~~~R----~~il~~~l~~~~~~----~~~~~~~~l~~l 72 (358)
.++.||+|||++ ..+++++.. ||. .+.+.+|...+| ..++++++..+... ....++..++.|
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 368999999986 123445555 553 566666665554 44777766554211 112234445556
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q psy3629 73 AALTKNFSGAELEGLVRAAQS 93 (358)
Q Consensus 73 a~~t~g~sgadi~~l~~~A~~ 93 (358)
....-.-...+++++++.++.
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHH
Confidence 554412255788888887754
No 187
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.21 E-value=0.79 Score=40.69 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=47.7
Q ss_pred CCeEEEEecCCC-------CCcchhhcCCCCCceEEEecCCCHHH----HHHHHHHHHhccccccc-----cCchhhHHH
Q psy3629 8 NNILVIGMTNRR-------DMIDEALLRPGRLELQMEISLPNEDG----RVQILQIHTAKMRSYKK-----LADDVNLKE 71 (358)
Q Consensus 8 ~~V~vI~aTN~p-------~~LD~Al~R~GRfd~~I~v~~P~~~~----R~~il~~~l~~~~~~~~-----~~~~~~l~~ 71 (358)
.++.+|+|||.+ ..+++++.. ||+. +.+.+|...+ ...+++.+++....... ..++..++.
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 368899999985 246788888 8863 4555555544 44555566554321111 123344455
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH
Q psy3629 72 LAALTKNFSGAELEGLVRAAQS 93 (358)
Q Consensus 72 la~~t~g~sgadi~~l~~~A~~ 93 (358)
|....-.-...+++++++.++.
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHH
Confidence 5443222345688888887754
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.27 E-value=1.3 Score=41.00 Aligned_cols=65 Identities=12% Similarity=0.067 Sum_probs=48.2
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCC
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKN 78 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g 78 (358)
..+.+|.+||.+..+.+++++ |+. .+.++.++.++..+.++..++... ...++...+.+++.+.|
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~---~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEK---LKLSPNAEKALIELSNG 203 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTT---CCBCHHHHHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCC
Confidence 456778889999999999999 885 789988898888888887774321 12244556667776654
No 189
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.27 E-value=0.2 Score=48.13 Aligned_cols=65 Identities=9% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
+.++.+......|.+|++|++-.+........+.-+...+.+.+++..|..+....++.||.+|-
T Consensus 262 l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~H 326 (400)
T 3lda_A 262 LDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQ 326 (400)
T ss_dssp HHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 34444444456899999999998875421110110111344566666665553333455555553
No 190
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.59 E-value=0.14 Score=44.24 Aligned_cols=18 Identities=11% Similarity=0.410 Sum_probs=15.5
Q ss_pred CCCceEEEEccchhhhhh
Q psy3629 283 NSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 283 ~~~p~iif~DeiD~~~~~ 300 (358)
...|.+|++||.-+....
T Consensus 123 ~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp SSCEEEEEEETSSHHHHH
T ss_pred CCceeEEEECChHHHhcc
Confidence 678999999999988655
No 191
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=84.28 E-value=5.1 Score=39.34 Aligned_cols=105 Identities=18% Similarity=0.075 Sum_probs=59.2
Q ss_pred CCeEEEEecCCCC-----------CcchhhcCCCCCceEEE-ecCCCHHHH---------HHHHHHHHhccc-cc-cccC
Q psy3629 8 NNILVIGMTNRRD-----------MIDEALLRPGRLELQME-ISLPNEDGR---------VQILQIHTAKMR-SY-KKLA 64 (358)
Q Consensus 8 ~~V~vI~aTN~p~-----------~LD~Al~R~GRfd~~I~-v~~P~~~~R---------~~il~~~l~~~~-~~-~~~~ 64 (358)
.++.||||+|..+ .|+++++- |||..+. ++.|+.+.- .+.++.+..... .. ....
T Consensus 338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~l 415 (506)
T 3f8t_A 338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPEL 415 (506)
T ss_dssp CCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEE
T ss_pred CCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 4689999999875 88999999 9987554 466664431 122222221110 00 0111
Q ss_pred chhhHHHHHH-----------------hcCCCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhhhccCHHHHHHhh
Q psy3629 65 DDVNLKELAA-----------------LTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITRADFLHAL 127 (358)
Q Consensus 65 ~~~~l~~la~-----------------~t~g~sgadi~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~~~v~~~Df~~al 127 (358)
++...+.+.+ ..-|.|++.+..+++-|.-.|..+ ....++.+|+.+|+
T Consensus 416 s~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~---------------gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 416 TEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR---------------LSDDVEPEDVDIAA 480 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHT---------------TCSEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHc---------------CcCCCCHHHHHHHH
Confidence 2211111111 245788999999998776666544 34568899999998
Q ss_pred hc
Q psy3629 128 ET 129 (358)
Q Consensus 128 ~~ 129 (358)
+-
T Consensus 481 ~L 482 (506)
T 3f8t_A 481 EL 482 (506)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 192
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.22 E-value=1.7 Score=35.88 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=39.9
Q ss_pred HHHHhhcCCCCCceEEEEccchhhhhhcCC----CCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 274 CTIILEAGPNSGLHIIIFDEIDAICKARGT----AGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 274 ~~~~f~~a~~~~p~iif~DeiD~~~~~r~~----~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
.+..+.+|-...|.+|++||--+-+..|.. ..-...+..+...++...+..+... +..+|.+|..++.++
T Consensus 90 qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 90 PLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVE 163 (171)
T ss_dssp HHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHH
T ss_pred HHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhh
Confidence 333566677789999999997766554311 1001112223445566666666432 455667777766654
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.79 E-value=0.59 Score=41.10 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.1
Q ss_pred CCCceEEEEccchhh
Q psy3629 283 NSGLHIIIFDEIDAI 297 (358)
Q Consensus 283 ~~~p~iif~DeiD~~ 297 (358)
...|.+|+|||+.-+
T Consensus 87 ~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 87 NDETKVIGIDEVQFF 101 (223)
T ss_dssp CTTCCEEEECSGGGS
T ss_pred CCCCCEEEEecCccC
Confidence 356889999999764
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=80.64 E-value=0.9 Score=44.17 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=17.6
Q ss_pred HhhcCCCCCceEEEEccchhhhhh
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
+-..++...|.+|+||++..+...
T Consensus 305 ~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 305 CRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHHHHHcCCCEEEEccHHHhccC
Confidence 333444567999999999998643
No 195
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=80.01 E-value=1.2 Score=38.02 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=20.2
Q ss_pred hhHHHHHHhhcCCCCCce--EEEEccchhhh
Q psy3629 270 SEFLCTIILEAGPNSGLH--IIIFDEIDAIC 298 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~--iif~DeiD~~~ 298 (358)
.+.....+.+.+....|. +|++||+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 106 PEELVNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEECchHhh
Confidence 344444455555556788 99999999885
No 196
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.55 E-value=5.9 Score=39.72 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=34.1
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc--ccchhc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--MIDEAL 347 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~iD~a~ 347 (358)
.+.+|+|||+..++..-. ......+.++..+ ...-+|.+|.+|.||. .|+..+
T Consensus 343 P~ivvVIDE~~~L~~~~~------~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~I 397 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVG------KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLI 397 (574)
T ss_dssp CEEEEEESCCTTHHHHTC------HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHH
T ss_pred CcEEEEEeCHHHHhhhhh------HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHH
Confidence 347999999999986511 0122334444433 2334799999999998 676554
No 197
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=79.54 E-value=1.4 Score=36.95 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=14.0
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+.+.|| +|+ ||.+ .+.+
T Consensus 3 i~l~G~--nGsGKTTL---l~~l 20 (178)
T 1ye8_A 3 IIITGE--PGVGKTTL---VKKI 20 (178)
T ss_dssp EEEECC--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 678999 999 9998 6555
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.26 E-value=0.53 Score=44.25 Aligned_cols=58 Identities=12% Similarity=0.228 Sum_probs=30.6
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhh--HHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHD--TVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~--~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
..|.+|++||+-+++..... +.. .... +.+.+++..|..+-...++.||.++......
T Consensus 230 ~~~~llIlDs~ta~ld~~~~-~~~-~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRSEYI-GRG-ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp SCEEEEEEETSSTTHHHHCC-STT-THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred CCCCEEEEeCchHhhhhhhc-ccc-cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 57999999999998854211 111 1112 2355555555544333345666665544433
No 199
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=76.53 E-value=2.6 Score=42.31 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=27.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
....+|++||+.-+ ....+..|+..+. ...+++++|=.+..-
T Consensus 278 ~~~dvlIIDEasml-------------~~~~~~~Ll~~~~---~~~~lilvGD~~QL~ 319 (574)
T 3e1s_A 278 APYDLLIVDEVSMM-------------GDALMLSLLAAVP---PGARVLLVGDTDQLP 319 (574)
T ss_dssp CSCSEEEECCGGGC-------------CHHHHHHHHTTSC---TTCEEEEEECTTSCC
T ss_pred ccCCEEEEcCccCC-------------CHHHHHHHHHhCc---CCCEEEEEecccccC
Confidence 35579999998654 1235667776665 345688888776643
No 200
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.81 E-value=1.5 Score=38.05 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=38.2
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.+.....+........|.+|++||.-+...... ......+.+..++..+.. .++.||.+|...+..
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~----d~~~~~~~l~~l~~~l~~----~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE----EERKIREVLLKLNTILLE----MGVTTILTTEAPDPQ 185 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS----SGGGHHHHHHHHHHHHHH----HCCEEEEEECCC---
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC----CHHHHHHHHHHHHHHHHH----CCCeEEEEECCCCCC
Confidence 344455555555567899999999998876421 111234446677776632 245666777655443
No 201
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.52 E-value=1.4 Score=38.12 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=24.2
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccchhhhhh
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
..+..+..+-...+...|..+++|.+..+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 119 NVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 34555666667777788899999999998754
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=74.45 E-value=2.1 Score=39.25 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHH
Q psy3629 7 LNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHT 54 (358)
Q Consensus 7 ~~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l 54 (358)
..++++|.+||.|+.|.|+++. | .++|+.|+.++..++++..+
T Consensus 110 ~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 110 PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 4578888889999999999999 8 89999999999888887765
No 203
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=73.15 E-value=8.1 Score=33.11 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=19.1
Q ss_pred hHHHHHHhhcCCCCCceEEEEccchhhh
Q psy3629 271 EFLCTIILEAGPNSGLHIIIFDEIDAIC 298 (358)
Q Consensus 271 e~~~~~~f~~a~~~~p~iif~DeiD~~~ 298 (358)
+.....+-+..++..|.+|++|++..+.
T Consensus 114 ~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 114 REFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred HHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 3334444444444678999999999986
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=72.79 E-value=5.4 Score=38.69 Aligned_cols=91 Identities=16% Similarity=0.037 Sum_probs=49.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhcccccccccccccccCCCCccccccccCcccccccccccHHHHHHHhhhcccc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQD 256 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~ 256 (358)
++.-+++.|+ +|+ ||.+ +..+...+ +. .+.....+.+... ..+..+..+.|++..++..
T Consensus 99 ~p~vIlivG~--~G~GKTTt---~~kLA~~l-----------~~-~G~kVllv~~D~~---R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 99 KPTILLMVGI--QGSGKTTT---VAKLARYF-----------QK-RGYKVGVVCSDTW---RPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp SSEEEEEECC--TTSSHHHH---HHHHHHHH-----------HT-TTCCEEEEECCCS---STHHHHHHHHHHGGGTCEE
T ss_pred CCeEEEEECc--CCCCHHHH---HHHHHHHH-----------HH-CCCeEEEEeCCCc---chhHHHHHHHHHHhcCCcE
Confidence 3567899999 999 9988 44442221 22 1222222222221 1222333344555444332
Q ss_pred cccccccc-CCCCchhHHHHHHhhcCCCCCceEEEEccc
Q psy3629 257 IDVKPFFF-NPKNTSEFLCTIILEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 257 ~~~~~~~~-~~~~~~e~~~~~~f~~a~~~~p~iif~Dei 294 (358)
|. ....++...+...++.++...+.+|++|..
T Consensus 159 ------~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 159 ------FGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTA 191 (443)
T ss_dssp ------ECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ------EecCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 11 122355566667788888777889999955
No 205
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=72.58 E-value=1.5 Score=39.69 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=18.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..+++|+|| ||| ||.+ |.++
T Consensus 104 ~n~~~l~Gp--pgtGKt~~---a~al 124 (267)
T 1u0j_A 104 RNTIWLFGP--ATTGKTNI---AEAI 124 (267)
T ss_dssp CCEEEEECS--TTSSHHHH---HHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHH
Confidence 457999999 999 9999 8888
No 206
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=72.02 E-value=5.5 Score=38.37 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=14.6
Q ss_pred CCCCceEEEEccchhhhh
Q psy3629 282 PNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 282 ~~~~p~iif~DeiD~~~~ 299 (358)
++..|.+|+||.+..+..
T Consensus 307 ~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 307 SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHSCCCEEEEECGGGCBC
T ss_pred HHcCCCEEEEcChhhcCC
Confidence 345789999999999864
No 207
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=71.41 E-value=4.8 Score=40.61 Aligned_cols=44 Identities=14% Similarity=0.382 Sum_probs=28.4
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
...+|++||++-+ . ...+..|+..+. ...+++++|=.+..-.+.
T Consensus 262 ~~d~lIIDEAsml-~------------~~~~~~Ll~~l~---~~~~liLvGD~~QL~~V~ 305 (608)
T 1w36_D 262 HLDVLVVDEASMI-D------------LPMMSRLIDALP---DHARVIFLGDRDQLASVE 305 (608)
T ss_dssp SCSEEEECSGGGC-B------------HHHHHHHHHTCC---TTCEEEEEECTTSGGGTS
T ss_pred CCCEEEEechhhC-C------------HHHHHHHHHhCC---CCCEEEEEcchhhcCCCC
Confidence 4569999999943 2 234566776653 345788888665554443
No 208
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=70.17 E-value=5 Score=39.28 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=19.9
Q ss_pred hhHHHHHHhhcCCCCCceEEEEccchhhhh
Q psy3629 270 SEFLCTIILEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 270 ~e~~~~~~f~~a~~~~p~iif~DeiD~~~~ 299 (358)
.+..+..+-...+...|.+|+||-+..+..
T Consensus 339 ~~~i~~~i~~~~~~~~~~lvVID~l~~l~~ 368 (503)
T 1q57_A 339 TDRLLAKLAYMRSGLGCDVIILDHISIVVS 368 (503)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEccchhcCC
Confidence 344444444444556789999999988753
No 209
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=68.90 E-value=2.1 Score=39.56 Aligned_cols=51 Identities=12% Similarity=0.064 Sum_probs=29.0
Q ss_pred CceEEEEccchh-hhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCC-----ccccchhcCC
Q psy3629 285 GLHIIIFDEIDA-ICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNR-----RDMIDEALLR 349 (358)
Q Consensus 285 ~p~iif~DeiD~-~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~-----~~~iD~a~lr 349 (358)
..-||++||++. +- +...+.|+..+..... +.++|+++|+- ...+-+++..
T Consensus 76 ~~kvvii~~~~~kl~-------------~~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s 132 (343)
T 1jr3_D 76 SRQTLLLLLPENGPN-------------AAINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN 132 (343)
T ss_dssp SCEEEEEECCSSCCC-------------TTHHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT
T ss_pred CCeEEEEECCCCCCC-------------hHHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh
Confidence 456999999987 41 1134667777776543 34555555431 2345556554
No 210
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=66.84 E-value=9.5 Score=36.78 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=25.4
Q ss_pred CceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCC
Q psy3629 285 GLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNR 339 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~ 339 (358)
...+|++||+..+- ...+..|+..+. ...+++++|=.+.
T Consensus 128 ~~~~iiiDE~~~~~-------------~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 128 KCRVLICDEVSMYD-------------RKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SCSEEEESCGGGCC-------------HHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred CCCEEEEECchhCC-------------HHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 45799999998642 234556666554 3446888886665
No 211
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=65.47 E-value=4.9 Score=38.03 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=44.2
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCce-------EEEecCCCHHHH----HHHHHHHHhccccccc----cCchhhHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLEL-------QMEISLPNEDGR----VQILQIHTAKMRSYKK----LADDVNLKELA 73 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~-------~I~v~~P~~~~R----~~il~~~l~~~~~~~~----~~~~~~l~~la 73 (358)
+|.+|+|||+. +. .+.+.|+|.. .+.+.+|...+| ..+.+++++.+..... ..+..-++.|.
T Consensus 272 ~~rii~at~~~--l~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRN--IK-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCC--HH-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 68899999983 22 3334566642 345566665444 4566666655421111 11223333333
Q ss_pred HhcCCCCH--HHHHHHHHHHHHH
Q psy3629 74 ALTKNFSG--AELEGLVRAAQSC 94 (358)
Q Consensus 74 ~~t~g~sg--adi~~l~~~A~~~ 94 (358)
. ..|.| ++|+++++.|+..
T Consensus 349 ~--~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 349 S--YPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp H--SCCTTHHHHHHHHHHHHHHH
T ss_pred h--CCCCcHHHHHHHHHHHHHHh
Confidence 2 34554 5899999888653
No 212
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=64.62 E-value=18 Score=32.69 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=15.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..-+.+.|| +|+ ||.+ +..+
T Consensus 105 g~vi~lvG~--~GsGKTTl---~~~L 125 (296)
T 2px0_A 105 SKYIVLFGS--TGAGKTTT---LAKL 125 (296)
T ss_dssp SSEEEEEES--TTSSHHHH---HHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHH
Confidence 345888999 999 9988 5544
No 213
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=63.45 E-value=5.4 Score=39.43 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=31.8
Q ss_pred CCce-EEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc--ccchhc
Q psy3629 284 SGLH-IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD--MIDEAL 347 (358)
Q Consensus 284 ~~p~-iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~--~iD~a~ 347 (358)
.-|- +|+|||...++..-. .....++..|...- ..-++.+|.+|.+|. .|+..+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~~------~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i 351 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTVG------KKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLI 351 (512)
T ss_dssp CCCEEEEEEETHHHHHHHHH------HHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHH
T ss_pred cCCcEEEEEeCHHHHHhhhh------HHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHH
Confidence 3464 899999988875310 01223343333322 223688999999997 455443
No 214
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.70 E-value=1.1 Score=41.75 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.-+++.|| +|+ ||.+ +..+
T Consensus 6 ~~i~i~Gp--tGsGKTtl---a~~L 25 (323)
T 3crm_A 6 PAIFLMGP--TAAGKTDL---AMAL 25 (323)
T ss_dssp EEEEEECC--TTSCHHHH---HHHH
T ss_pred cEEEEECC--CCCCHHHH---HHHH
Confidence 35889999 999 9999 8887
No 215
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=61.16 E-value=33 Score=31.18 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=49.4
Q ss_pred CeEEEEecCCC------CCcchhhcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCCHH
Q psy3629 9 NILVIGMTNRR------DMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGA 82 (358)
Q Consensus 9 ~V~vI~aTN~p------~~LD~Al~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sga 82 (358)
++++|.+|+.+ ..+-+++.. |- ..+++..|+..+....++..++..+ ...++..++.|++.+.| +..
T Consensus 107 ~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g---~~i~~~a~~~l~~~~~g-dl~ 179 (343)
T 1jr3_D 107 DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLN---LELDDAANQVLCYCYEG-NLL 179 (343)
T ss_dssp TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTT---CEECHHHHHHHHHSSTT-CHH
T ss_pred CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhch-HHH
Confidence 45555555443 356778776 54 6899999999998888888876642 22355667778887765 555
Q ss_pred HHHHHHHHH
Q psy3629 83 ELEGLVRAA 91 (358)
Q Consensus 83 di~~l~~~A 91 (358)
++.+.++..
T Consensus 180 ~~~~elekl 188 (343)
T 1jr3_D 180 ALAQALERL 188 (343)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=60.61 E-value=16 Score=35.22 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=18.9
Q ss_pred chhHHHHHHhhcCCCCCceEEEEccc
Q psy3629 269 TSEFLCTIILEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 269 ~~e~~~~~~f~~a~~~~p~iif~Dei 294 (358)
++........+.++...+.+|++|..
T Consensus 163 dp~~i~~~al~~a~~~~~DvvIIDTa 188 (433)
T 3kl4_A 163 NPIEIAKKGVDIFVKNKMDIIIVDTA 188 (433)
T ss_dssp CHHHHHHHHHHHTTTTTCSEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 34444556677888788899999966
No 217
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.21 E-value=1.9 Score=35.70 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+..+++.|| ||+ ||.+ ++.+
T Consensus 5 ~~~i~l~G~--~GsGKst~---a~~L 25 (185)
T 3trf_A 5 LTNIYLIGL--MGAGKTSV---GSQL 25 (185)
T ss_dssp CCEEEEECS--TTSSHHHH---HHHH
T ss_pred CCEEEEECC--CCCCHHHH---HHHH
Confidence 446899999 999 9999 8777
No 218
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=60.01 E-value=15 Score=31.44 Aligned_cols=57 Identities=14% Similarity=0.220 Sum_probs=32.6
Q ss_pred HHHHHHhhcCC----CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCc
Q psy3629 272 FLCTIILEAGP----NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRR 340 (358)
Q Consensus 272 ~~~~~~f~~a~----~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~ 340 (358)
.++...|+.++ +....+|++||+=.....+-- ..+. ++..+..-. .++-||.|+|.+
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l------~~~e----v~~~l~~Rp--~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL------PLEE----VISALNARP--GHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS------CHHH----HHHHHHTSC--TTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC------CHHH----HHHHHHhCc--CCCEEEEECCCC
Confidence 34444455444 466789999999776665311 1123 334443322 246788888775
No 219
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=58.01 E-value=1 Score=42.86 Aligned_cols=31 Identities=10% Similarity=0.052 Sum_probs=26.5
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCceEEEecC
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLELQMEISL 40 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~ 40 (358)
.+.|+++|||++.+ ++++||||++..++...
T Consensus 254 ~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 254 SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 45788999999999 79999999998877744
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.54 E-value=2.5 Score=34.58 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=16.9
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
-+++.|+ ||+ ||.+ ++.+.+
T Consensus 5 ~i~l~G~--~GsGKST~---a~~La~ 25 (178)
T 1qhx_A 5 MIILNGG--SSAGKSGI---VRCLQS 25 (178)
T ss_dssp EEEEECC--TTSSHHHH---HHHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHHH
Confidence 4789999 999 9999 877744
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=57.10 E-value=7 Score=35.74 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.2
Q ss_pred eeeeeeccCCCCc-hhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l 196 (358)
.-+++.|+ ||+ ||.+
T Consensus 69 ~l~li~G~--pG~GKTtl 84 (315)
T 3bh0_A 69 NFVLIAAR--PSMGKTAF 84 (315)
T ss_dssp CEEEEECC--TTSSHHHH
T ss_pred cEEEEEeC--CCCCHHHH
Confidence 44899999 999 9988
No 222
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=57.08 E-value=62 Score=28.96 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=21.6
Q ss_pred CCchhHHHHHHhhcCC-CCCceEEEEccchhhhh
Q psy3629 267 KNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICK 299 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~ 299 (358)
+++.+...+.+..... .....+|++||++.+..
T Consensus 128 v~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 128 VGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp EECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred EecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 3566776665544322 24457899999999854
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.56 E-value=2.6 Score=35.57 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.8
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+...+++.|| ||+ ||.+ ++.+
T Consensus 24 ~~~~i~l~G~--~GsGKsTl---~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGY--MGAGKTTL---GKAF 45 (199)
T ss_dssp CCCEEEEECC--TTSCHHHH---HHHH
T ss_pred CCCEEEEEcC--CCCCHHHH---HHHH
Confidence 3456899999 999 9999 8777
No 224
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=52.73 E-value=2.6 Score=34.55 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=16.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.+++.|| ||+ ||.+ ++.+
T Consensus 6 ~i~i~G~--~GsGKsTl---a~~L 24 (175)
T 1via_A 6 NIVFIGF--MGSGKSTL---ARAL 24 (175)
T ss_dssp CEEEECC--TTSCHHHH---HHHH
T ss_pred EEEEEcC--CCCCHHHH---HHHH
Confidence 4889999 999 9999 8777
No 225
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=52.64 E-value=2.9 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.123 Sum_probs=15.9
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-+.+.|| ||+ ||.+ ++.+.
T Consensus 3 ~i~l~G~--~GsGKsT~---~~~L~ 22 (173)
T 3kb2_A 3 LIILEGP--DCCFKSTV---AAKLS 22 (173)
T ss_dssp EEEEECS--SSSSHHHH---HHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHH
Confidence 4789999 999 9999 77773
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=51.86 E-value=5 Score=32.62 Aligned_cols=20 Identities=15% Similarity=-0.054 Sum_probs=16.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+++.|+ ||+ ||.+ ++.+.
T Consensus 3 ~~I~i~G~--~GsGKST~---a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGC--PGSGKSTW---AREFI 23 (181)
T ss_dssp EEEEEECC--TTSSHHHH---HHHHH
T ss_pred eEEEEecC--CCCCHHHH---HHHHH
Confidence 34789999 999 9999 87773
No 227
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=51.26 E-value=16 Score=33.43 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=18.1
Q ss_pred CCchhHHHHHHhhcCCCCCceEEEEccc
Q psy3629 267 KNTSEFLCTIILEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a~~~~p~iif~Dei 294 (358)
.+++...+...+..|....|.+|++|+.
T Consensus 168 ~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 168 GADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp TCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3455444444555566678889999965
No 228
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=51.00 E-value=9.9 Score=32.48 Aligned_cols=19 Identities=5% Similarity=-0.106 Sum_probs=14.3
Q ss_pred eeeeccCCCCc-hh-hhhhHHhhhcc
Q psy3629 182 VLLEVDKVPTD-EL-SLSNFAAANKD 205 (358)
Q Consensus 182 ~ll~gp~~pg~-kt-~l~~~a~~~~~ 205 (358)
.+++|| .|+ || .| .+++..
T Consensus 23 ~fiyG~--MgsGKTt~L---l~~i~n 43 (195)
T 1w4r_A 23 QVILGP--MFSGKSTEL---MRRVRR 43 (195)
T ss_dssp EEEEEC--TTSCHHHHH---HHHHHH
T ss_pred EEEECC--CCCcHHHHH---HHHHHH
Confidence 678999 999 99 67 555533
No 229
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=50.65 E-value=3.9 Score=33.76 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+++.|+ ||+ ||.+ ++.+.
T Consensus 5 ~~~I~l~G~--~GsGKST~---~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGH--PATGKTTL---SQALA 26 (193)
T ss_dssp CEEEEEEES--TTSSHHHH---HHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9999 77773
No 230
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.74 E-value=3.4 Score=33.56 Aligned_cols=20 Identities=20% Similarity=-0.003 Sum_probs=16.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+..+.+.|+ ||+ ||.+ ++.+
T Consensus 7 ~~~i~l~G~--~GsGKSTv---a~~L 27 (168)
T 1zuh_A 7 MQHLVLIGF--MGSGKSSL---AQEL 27 (168)
T ss_dssp -CEEEEESC--TTSSHHHH---HHHH
T ss_pred cceEEEECC--CCCCHHHH---HHHH
Confidence 445899999 999 9999 7777
No 231
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.86 E-value=3.4 Score=34.10 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=15.3
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|+ ||+ ||.+ |+.+
T Consensus 5 I~l~G~--~GsGKsT~---a~~L 22 (184)
T 2iyv_A 5 AVLVGL--PGSGKSTI---GRRL 22 (184)
T ss_dssp EEEECS--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 789999 999 9999 7777
No 232
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.60 E-value=5.2 Score=34.90 Aligned_cols=14 Identities=0% Similarity=-0.045 Sum_probs=12.5
Q ss_pred eeeeeccCCCCc-hhhh
Q psy3629 181 SVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l 196 (358)
.+++.|| +|+ ||.+
T Consensus 110 ~~ll~~~--tG~GKT~~ 124 (237)
T 2fz4_A 110 RGCIVLP--TGSGKTHV 124 (237)
T ss_dssp EEEEEES--SSTTHHHH
T ss_pred CEEEEeC--CCCCHHHH
Confidence 3899999 999 9987
No 233
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=48.23 E-value=5.5 Score=37.33 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred hhcCCCCCceEEEEccc
Q psy3629 278 LEAGPNSGLHIIIFDEI 294 (358)
Q Consensus 278 f~~a~~~~p~iif~Dei 294 (358)
+..|-...|.+|++||+
T Consensus 189 La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 189 LRSALREDPDIILVGEM 205 (356)
T ss_dssp HHHHTTSCCSEEEESCC
T ss_pred HHHHhhhCcCEEecCCC
Confidence 66666689999999998
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=47.60 E-value=4.9 Score=33.36 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=17.2
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..+++.|+ ||+ ||.+ ++.+.+
T Consensus 11 ~~I~l~G~--~GsGKSTv---~~~La~ 32 (184)
T 1y63_A 11 INILITGT--PGTGKTSM---AEMIAA 32 (184)
T ss_dssp CEEEEECS--TTSSHHHH---HHHHHH
T ss_pred CEEEEECC--CCCCHHHH---HHHHHH
Confidence 45899999 999 9999 777743
No 235
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=46.58 E-value=4.6 Score=34.54 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=16.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-++|.|+ ||+ ||.+ ++.+.
T Consensus 6 ~~I~l~G~--~GsGKsT~---a~~La 26 (217)
T 3be4_A 6 HNLILIGA--PGSGKGTQ---CEFIK 26 (217)
T ss_dssp CEEEEEEC--TTSSHHHH---HHHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHHH
Confidence 45899999 999 9998 77773
No 236
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=46.00 E-value=3.9 Score=33.60 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...+++.|+ ||+ ||.+ ++.+.
T Consensus 11 ~~~i~i~G~--~GsGKst~---~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGT--PGVGKTTL---GKELA 32 (180)
T ss_dssp CCCEEEECS--TTSSHHHH---HHHHH
T ss_pred CCeEEEEeC--CCCCHHHH---HHHHH
Confidence 345899999 999 9999 77773
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=45.98 E-value=4.8 Score=32.63 Aligned_cols=18 Identities=6% Similarity=0.010 Sum_probs=15.7
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|| ||+ ||.+ ++.+
T Consensus 6 ~i~l~G~--~GsGKSTl---~~~L 24 (173)
T 1kag_A 6 NIFLVGP--MGAGKSTI---GRQL 24 (173)
T ss_dssp CEEEECC--TTSCHHHH---HHHH
T ss_pred eEEEECC--CCCCHHHH---HHHH
Confidence 4789999 999 9999 7777
No 238
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.91 E-value=4.5 Score=33.13 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=13.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+++.|+ ||+ ||.+ ++.+.
T Consensus 6 ~~I~l~G~--~GsGKST~---a~~La 26 (183)
T 2vli_A 6 PIIWINGP--FGVGKTHT---AHTLH 26 (183)
T ss_dssp CEEEEECC--C----CHH---HHHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHHH
Confidence 45889999 999 9998 77763
No 239
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=45.19 E-value=26 Score=30.61 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=38.5
Q ss_pred CCCCchhHHHHHHhhcC--CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 265 NPKNTSEFLCTIILEAG--PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 265 ~~~~~~e~~~~~~f~~a--~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
..++++|+....+.... .-..-.+|+|||+|.+... + ....+..++..+. ...+++++-|| -|..
T Consensus 179 Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~-~--------~~~~l~~i~~~~~---~~~q~l~~SAT-~~~~ 245 (262)
T 3ly5_A 179 IIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-G--------FEEELKQIIKLLP---TRRQTMLFSAT-QTRK 245 (262)
T ss_dssp EEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT-T--------CHHHHHHHHHHSC---SSSEEEEECSS-CCHH
T ss_pred EEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh-h--------HHHHHHHHHHhCC---CCCeEEEEEec-CCHH
Confidence 35678888877665542 2244578999999998764 1 2234555555553 22244444444 4444
Q ss_pred cc
Q psy3629 343 ID 344 (358)
Q Consensus 343 iD 344 (358)
++
T Consensus 246 v~ 247 (262)
T 3ly5_A 246 VE 247 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=44.59 E-value=8.7 Score=31.61 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+.+.|| ||+ ||.+ ++.+.
T Consensus 10 ~~i~l~G~--~GsGKSTl---~~~La 30 (191)
T 1zp6_A 10 NILLLSGH--PGSGKSTI---AEALA 30 (191)
T ss_dssp EEEEEEEC--TTSCHHHH---HHHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHHH
Confidence 44789999 999 9999 88883
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.55 E-value=5.3 Score=33.87 Aligned_cols=17 Identities=12% Similarity=-0.031 Sum_probs=15.1
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|| ||+ ||.+ ++.+
T Consensus 3 I~l~G~--~GsGKsT~---a~~L 20 (216)
T 3dl0_A 3 LVLMGL--PGAGKGTQ---GERI 20 (216)
T ss_dssp EEEECS--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 788999 999 9999 7777
No 242
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=44.51 E-value=4.2 Score=32.94 Aligned_cols=18 Identities=0% Similarity=-0.099 Sum_probs=15.7
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+++.|+ ||+ ||.+ ++.+
T Consensus 4 ~I~l~G~--~GsGKsT~---a~~L 22 (173)
T 1e6c_A 4 PIFMVGA--RGCGMTTV---GREL 22 (173)
T ss_dssp CEEEESC--TTSSHHHH---HHHH
T ss_pred eEEEECC--CCCCHHHH---HHHH
Confidence 4789999 999 9998 7777
No 243
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=44.21 E-value=4.9 Score=34.28 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=17.0
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-++|.|+ ||+ ||.+ ++.+.
T Consensus 4 ~~~I~l~G~--~GsGKsT~---a~~La 25 (220)
T 1aky_A 4 SIRMVLIGP--PGAGKGTQ---APNLQ 25 (220)
T ss_dssp CCEEEEECC--TTSSHHHH---HHHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9998 77663
No 244
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=44.12 E-value=25 Score=32.33 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=16.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..+.+.|| .|+ ||.+ .+.+..
T Consensus 172 ~~v~i~G~--~GsGKTTl---l~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGG--TGSGKTTY---IKSIME 193 (330)
T ss_dssp CCEEEEES--TTSCHHHH---HHHGGG
T ss_pred CEEEEECC--CCCCHHHH---HHHHhC
Confidence 45889999 999 9998 777643
No 245
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.96 E-value=4.5 Score=33.96 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=16.8
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+++.|+ ||+ ||.+ ++.+.
T Consensus 21 ~~I~l~G~--~GsGKST~---a~~La 41 (201)
T 2cdn_A 21 MRVLLLGP--PGAGKGTQ---AVKLA 41 (201)
T ss_dssp CEEEEECC--TTSSHHHH---HHHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHHH
Confidence 45899999 999 9999 77773
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=43.80 E-value=6 Score=33.95 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=17.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+++.|+ ||+ ||.+ ++.+.
T Consensus 7 ~~~I~l~G~--~GsGKsT~---a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGA--PGSGKGTV---SSRIT 28 (227)
T ss_dssp CCEEEEEEC--TTSSHHHH---HHHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHHH
Confidence 455899999 999 9999 77773
No 247
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=43.21 E-value=37 Score=28.59 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=37.1
Q ss_pred CCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 266 PKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.+++++.....+...... ..-..|++||+|.+... + ....+..++..+. ...+++++-|| -|+.+
T Consensus 147 iv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~--------~~~~~~~i~~~~~---~~~~~l~~SAT-~~~~~ 212 (228)
T 3iuy_A 147 IIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM-E--------FEPQIRKILLDVR---PDRQTVMTSAT-WPDTV 212 (228)
T ss_dssp EEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT-T--------CHHHHHHHHHHSC---SSCEEEEEESC-CCHHH
T ss_pred EEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc-c--------hHHHHHHHHHhCC---cCCeEEEEEee-CCHHH
Confidence 456777777765554332 44578999999998754 1 1233445555543 22345555555 44443
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.77 E-value=9.1 Score=30.54 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=15.2
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|| ||+ ||.+ ++.+
T Consensus 4 I~l~G~--~GsGKsT~---a~~L 21 (179)
T 3lw7_A 4 ILITGM--PGSGKSEF---AKLL 21 (179)
T ss_dssp EEEECC--TTSCHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 688999 999 9999 8777
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=42.43 E-value=6.1 Score=34.88 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=15.8
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-+++.|| ||+ ||.+ |+.+.
T Consensus 3 li~I~G~--~GSGKSTl---a~~La 22 (253)
T 2ze6_A 3 LHLIYGP--TCSGKTDM---AIQIA 22 (253)
T ss_dssp EEEEECC--TTSSHHHH---HHHHH
T ss_pred EEEEECC--CCcCHHHH---HHHHH
Confidence 3789999 999 9999 77763
No 250
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=42.27 E-value=5.3 Score=34.11 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+++.|| ||+ ||.+ ++.+.
T Consensus 5 ~~~I~l~G~--~GsGKsT~---~~~La 26 (222)
T 1zak_A 5 PLKVMISGA--PASGKGTQ---CELIK 26 (222)
T ss_dssp SCCEEEEES--TTSSHHHH---HHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHH
Confidence 445899999 999 9998 77663
No 251
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=41.39 E-value=8 Score=32.30 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=17.1
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+.+.|+ ||+ ||.+ ++.+.
T Consensus 15 ~~~I~l~G~--~GsGKsT~---~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGG--PGAGKGTQ---CEKLV 36 (203)
T ss_dssp CEEEEEECS--TTSSHHHH---HHHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHHH
Confidence 456899999 999 9998 76663
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.35 E-value=5.1 Score=32.93 Aligned_cols=19 Identities=16% Similarity=0.088 Sum_probs=16.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-+.+.|+ ||+ ||.+ ++.+.
T Consensus 6 ~I~l~G~--~GsGKST~---~~~La 25 (186)
T 3cm0_A 6 AVIFLGP--PGAGKGTQ---ASRLA 25 (186)
T ss_dssp EEEEECC--TTSCHHHH---HHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHH
Confidence 4889999 999 9998 77763
No 253
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=41.15 E-value=37 Score=33.39 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=17.7
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.+-+.++|+ +|. ||.| |..+.
T Consensus 152 ~~vv~I~G~--gGvGKTtL---A~~v~ 173 (549)
T 2a5y_B 152 SFFLFLHGR--AGSGKSVI---ASQAL 173 (549)
T ss_dssp SEEEEEECS--TTSSHHHH---HHHHH
T ss_pred ceEEEEEcC--CCCCHHHH---HHHHH
Confidence 466889999 999 9999 88773
No 254
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=40.59 E-value=6.2 Score=32.43 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=16.4
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+++.|+ ||+ ||.+ ++.+.
T Consensus 4 ~~I~l~G~--~GsGKsT~---a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGG--PGAGKGTQ---CARIV 24 (196)
T ss_dssp EEEEEECC--TTSSHHHH---HHHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHHH
Confidence 45889999 999 9998 76663
No 255
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=40.43 E-value=28 Score=33.47 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.1
Q ss_pred eeeeeeccCCCCc-hhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSL 196 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l 196 (358)
.-+++.|+ ||+ ||.+
T Consensus 198 ~liiIaG~--pG~GKTtl 213 (444)
T 3bgw_A 198 NFVLIAAR--PSMGKTAF 213 (444)
T ss_dssp CEEEEEEC--SSSSHHHH
T ss_pred cEEEEEeC--CCCChHHH
Confidence 34899999 999 9988
No 256
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=40.30 E-value=14 Score=36.28 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
...+++.|| +|+ ||.+ .+++.
T Consensus 260 g~~i~I~Gp--tGSGKTTl---L~aL~ 281 (511)
T 2oap_1 260 KFSAIVVGE--TASGKTTT---LNAIM 281 (511)
T ss_dssp TCCEEEEES--TTSSHHHH---HHHHG
T ss_pred CCEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9988 66663
No 257
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.30 E-value=6.3 Score=34.05 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=17.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+..++|.|+ ||+ ||.+ ++.+.
T Consensus 16 ~~~I~l~G~--~GsGKsT~---a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGP--PGAGKGTQ---APKLA 37 (233)
T ss_dssp CCEEEEECC--TTSSHHHH---HHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9998 77773
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=40.23 E-value=6.3 Score=37.06 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
...++|.|| ||+ ||.+ ++.+
T Consensus 24 ~~~i~l~G~--~G~GKTTl---~~~l 44 (359)
T 2ga8_A 24 RVCVILVGS--PGSGKSTI---AEEL 44 (359)
T ss_dssp CEEEEEECC--TTSSHHHH---HHHH
T ss_pred eeEEEEECC--CCCcHHHH---HHHH
Confidence 456899999 999 9999 8777
No 259
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=40.22 E-value=6.3 Score=32.56 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+.+.|+ ||+ ||.+ ++.+.
T Consensus 9 ~~~I~l~G~--~GsGKsT~---~~~La 30 (196)
T 2c95_A 9 TNIIFVVGG--PGSGKGTQ---CEKIV 30 (196)
T ss_dssp SCEEEEEEC--TTSSHHHH---HHHHH
T ss_pred CCEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9998 77663
No 260
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=40.11 E-value=4.8 Score=33.08 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=16.3
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
-+++.|| ||+ ||.+ ++.+.+
T Consensus 5 ~I~i~G~--~GsGKsT~---~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGV--PGVGSTTS---SQLAMD 25 (192)
T ss_dssp EEEEECC--TTSCHHHH---HHHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHHH
Confidence 4789999 999 9998 776644
No 261
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=40.06 E-value=5.5 Score=34.18 Aligned_cols=17 Identities=12% Similarity=0.004 Sum_probs=14.7
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|| ||+ |+.. |+.+
T Consensus 3 Iil~Gp--PGsGKgTq---a~~L 20 (206)
T 3sr0_A 3 LVFLGP--PGAGKGTQ---AKRL 20 (206)
T ss_dssp EEEECS--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 678999 999 9888 7777
No 262
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=39.77 E-value=19 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=16.0
Q ss_pred hhcCCCCCceEEEEccchhhh
Q psy3629 278 LEAGPNSGLHIIIFDEIDAIC 298 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~ 298 (358)
.+.|+...|.|+|+||=-.+.
T Consensus 71 ~~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 71 EEEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp HHHHTTCCCEEEEECTTCCEE
T ss_pred HHHHhcCCCEEEEECCCCCEE
Confidence 456778899999999865543
No 263
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=39.00 E-value=5.9 Score=31.90 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=15.5
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.+.|+ ||+ ||.+ ++.+.
T Consensus 3 I~l~G~--~GsGKsT~---a~~L~ 21 (168)
T 2pt5_A 3 IYLIGF--MCSGKSTV---GSLLS 21 (168)
T ss_dssp EEEESC--TTSCHHHH---HHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHH
Confidence 789999 999 9998 77773
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=38.94 E-value=6 Score=33.47 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=15.0
Q ss_pred eeeeccCCCCc-hhhhhhHHhhh
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+++.|| ||+ ||.+ ++.+
T Consensus 3 I~l~G~--~GsGKsT~---a~~L 20 (216)
T 3fb4_A 3 IVLMGL--PGAGKGTQ---AEQI 20 (216)
T ss_dssp EEEECS--TTSSHHHH---HHHH
T ss_pred EEEECC--CCCCHHHH---HHHH
Confidence 688999 999 9998 7777
No 265
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=38.26 E-value=7.4 Score=34.02 Aligned_cols=22 Identities=9% Similarity=-0.123 Sum_probs=18.0
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.+.-+++.|| ||+ ||.+ ++.+.
T Consensus 28 ~~~~I~l~G~--~GsGKsT~---a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGA--PGSGKGTQ---SLNLK 50 (243)
T ss_dssp CCEEEEEECC--TTSSHHHH---HHHHH
T ss_pred CCcEEEEECC--CCCCHHHH---HHHHH
Confidence 3556999999 999 9998 77773
No 266
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.19 E-value=6.1 Score=32.75 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=16.6
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+.+.|+ ||+ ||.+ ++.+.
T Consensus 13 ~~I~l~G~--~GsGKsT~---a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGG--PGSGKGTQ---CEKLV 33 (199)
T ss_dssp CEEEEEEC--TTSSHHHH---HHHHH
T ss_pred CEEEEECC--CCCCHHHH---HHHHH
Confidence 45889999 999 9998 77773
No 267
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=37.81 E-value=44 Score=27.43 Aligned_cols=65 Identities=14% Similarity=0.181 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHhhcC-CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 266 PKNTSEFLCTIILEAG-PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.++++|.....+.... ....-.+|++||+|.+... .....+..++..+. ...+++++-|| -|..+
T Consensus 126 ~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~---------~~~~~l~~i~~~~~---~~~~~l~~SAT-~~~~~ 191 (206)
T 1vec_A 126 VIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ---------DFVQIMEDIILTLP---KNRQILLYSAT-FPLSV 191 (206)
T ss_dssp EEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST---------TTHHHHHHHHHHSC---TTCEEEEEESC-CCHHH
T ss_pred EEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh---------CcHHHHHHHHHhCC---ccceEEEEEee-CCHHH
Confidence 3467777665554432 2245578999999998642 12344555655553 22345555555 44443
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=37.72 E-value=25 Score=30.19 Aligned_cols=69 Identities=9% Similarity=0.011 Sum_probs=36.6
Q ss_pred HHHhhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc----chhcCCC
Q psy3629 275 TIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI----DEALLRP 350 (358)
Q Consensus 275 ~~~f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i----D~a~lr~ 350 (358)
+-.+.+|-...|.++++||--+-... .....+-.+|.++.. . +..||.+|..++.+ |.-++=.
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~---------~~~~~l~~~l~~~~~--~--g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDE---------DSKHKVLKSILEILK--E--KGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCT---------TTHHHHHHHHHHHHH--H--HSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCH---------HHHHHHHHHHHHHHh--C--CCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 34566666788999999987653322 223334455555421 1 23556666666544 4455667
Q ss_pred CCCccc
Q psy3629 351 GRLEVS 356 (358)
Q Consensus 351 GRfd~~ 356 (358)
||.|.+
T Consensus 208 ~~~~~~ 213 (214)
T 1sgw_A 208 TKIDKK 213 (214)
T ss_dssp C-----
T ss_pred CcccCC
Confidence 777765
No 269
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.37 E-value=8.5 Score=31.48 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+.+.|+ ||+ ||.+ ++.+.
T Consensus 6 ~~~I~l~G~--~GsGKsT~---~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGG--PGSGKGTQ---CANIV 27 (194)
T ss_dssp CEEEEEEES--TTSSHHHH---HHHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9998 77663
No 270
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=37.29 E-value=42 Score=28.58 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=34.4
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.+++++.....+..... .....+|+|||+|.+... + ....+..++..+. ...+++++-||=
T Consensus 153 lv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~--------~~~~l~~i~~~~~---~~~~~i~~SAT~ 214 (237)
T 3bor_A 153 VVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-G--------FKDQIYEIFQKLN---TSIQVVLLSATM 214 (237)
T ss_dssp EEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT-T--------CHHHHHHHHHHSC---TTCEEEEECSSC
T ss_pred EEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc-C--------cHHHHHHHHHhCC---CCCeEEEEEEec
Confidence 44677777666544322 234579999999998754 1 1233445555553 223455555553
No 271
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=37.28 E-value=55 Score=27.65 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=35.4
Q ss_pred CCCchhHHHHHHhhcC--CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 266 PKNTSEFLCTIILEAG--PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a--~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.+++++.....+.... ....-..|++||+|.+... + ....+..++..+. ...+++++-||-
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~-~--------~~~~~~~i~~~~~---~~~~~l~~SAT~ 212 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDM-G--------FADTMNAVIENLP---KKRQTLLFSATQ 212 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT-T--------THHHHHHHHHTSC---TTSEEEEEESSC
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcC-C--------cHHHHHHHHHhCC---CCCeEEEEEeeC
Confidence 3467777776665532 2244568999999988754 1 1233455555553 223455555553
No 272
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} SCOP: b.52.2.0
Probab=37.13 E-value=23 Score=27.22 Aligned_cols=17 Identities=6% Similarity=-0.107 Sum_probs=11.8
Q ss_pred hhcCCCCCceEEEEccch
Q psy3629 278 LEAGPNSGLHIIIFDEID 295 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD 295 (358)
.+.|+. .|.|+|+||=|
T Consensus 98 ~~e~~~-~P~vV~vd~~~ 114 (114)
T 3oug_A 98 PTRENI-KPKLVDLKTGD 114 (114)
T ss_dssp TTSCCC-CCEEEECC---
T ss_pred HHHHhc-CCEEEEeCCCC
Confidence 456777 99999999854
No 273
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=37.04 E-value=53 Score=27.40 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.++++|.....+..... .....+|++||+|.+... + ....+..++..+. ...+++++-|| -|+.+
T Consensus 130 iv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~--------~~~~l~~i~~~~~---~~~~~l~~SAT-~~~~~ 195 (219)
T 1q0u_A 130 VIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM-G--------FITDVDQIAARMP---KDLQMLVFSAT-IPEKL 195 (219)
T ss_dssp EEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT-T--------CHHHHHHHHHTSC---TTCEEEEEESC-CCGGG
T ss_pred EEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhh-C--------hHHHHHHHHHhCC---cccEEEEEecC-CCHHH
Confidence 44777777665544222 244578999999998754 1 1233455555553 22345555555 44443
No 274
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=37.00 E-value=50 Score=28.14 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.++++++....+..... -..-..|+|||+|.+... + ....+..++..+. ...+++++-|| -|..+
T Consensus 156 ~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-~--------~~~~~~~i~~~~~---~~~q~~~~SAT-~~~~~ 221 (242)
T 3fe2_A 156 CIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM-G--------FEPQIRKIVDQIR---PDRQTLMWSAT-WPKEV 221 (242)
T ss_dssp EEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHT-T--------CHHHHHHHHTTSC---SSCEEEEEESC-CCHHH
T ss_pred EEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhh-C--------cHHHHHHHHHhCC---ccceEEEEEee-cCHHH
Confidence 45778887776654432 244578999999998764 1 2234445555553 33345555555 44433
No 275
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=36.93 E-value=51 Score=27.01 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=34.2
Q ss_pred CCchhHHHHHHhhcC-CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccc
Q psy3629 267 KNTSEFLCTIILEAG-PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDM 342 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~ 342 (358)
+++++.....+.... .-..-.+|++||+|.+... .....+..++..+. ...+++++-|| -+..
T Consensus 125 v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~---------~~~~~~~~i~~~~~---~~~~~i~~SAT-~~~~ 188 (207)
T 2gxq_A 125 VATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM---------GFEEEVEALLSATP---PSRQTLLFSAT-LPSW 188 (207)
T ss_dssp EECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT---------TCHHHHHHHHHTSC---TTSEEEEECSS-CCHH
T ss_pred EECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc---------chHHHHHHHHHhCC---ccCeEEEEEEe-cCHH
Confidence 456666655544322 1244579999999998654 12334555665543 22345555555 4433
No 276
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=36.69 E-value=6.8 Score=32.81 Aligned_cols=58 Identities=7% Similarity=0.117 Sum_probs=30.2
Q ss_pred ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 286 LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 286 p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
..+|++|==...+-.|-...........++...+...+.+......++|-++..++.+
T Consensus 112 ~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~e~ 169 (202)
T 3t61_A 112 LAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEI 169 (202)
T ss_dssp CEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEESSSCHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeCCCCHHHH
Confidence 3678887544444444211000001244566677777766544456777776555443
No 277
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.64 E-value=36 Score=31.71 Aligned_cols=52 Identities=6% Similarity=-0.019 Sum_probs=36.7
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
..|.++++||+-.++..+. ......+..++.++-... +.++.+|-+|..+..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~------~~~~~~l~~~~~~~Rk~g----~~~~~~tQ~~~d~~~ 312 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQT------PQAIAFLRDTSKRIRKYN----GSLIVISQNVIDFLA 312 (392)
T ss_dssp CTTCEEEETTGGGGCCTTC------THHHHHHHHHHHHGGGGT----CEEEEEESCGGGGGS
T ss_pred CccEEEEEecHHHHhCcCc------hHHHHHHHHHHHHhhhhC----eEEEEEcCCHHHhhC
Confidence 4589999999999986421 134556777777766444 577888888887764
No 278
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=36.36 E-value=56 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCchhHHHHHHhhcC---CCCCceEEEEccchhhhhh
Q psy3629 266 PKNTSEFLCTIILEAG---PNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a---~~~~p~iif~DeiD~~~~~ 300 (358)
.++++++....+.... .-..-..|+|||+|.+...
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFED 190 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHH
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccc
Confidence 4578888877665542 2244578999999999764
No 279
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=36.07 E-value=56 Score=28.20 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=35.4
Q ss_pred CCCchhHHHHHHhhcC--CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 266 PKNTSEFLCTIILEAG--PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a--~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.++++++....+.... .-..-.+|++||+|.+... .....+..++..+. ...+++++-||=
T Consensus 165 ~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~---------~~~~~l~~i~~~~~---~~~~~l~~SAT~ 227 (249)
T 3ber_A 165 IIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM---------DFETEVDKILKVIP---RDRKTFLFSATM 227 (249)
T ss_dssp EEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT---------TCHHHHHHHHHSSC---SSSEEEEEESSC
T ss_pred EEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc---------ChHHHHHHHHHhCC---CCCeEEEEeccC
Confidence 4567777776665422 2344578999999988654 11233455555553 223455555553
No 280
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=35.93 E-value=9.3 Score=33.10 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=16.4
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
++-+++.|| ||+ |+.. |+.+
T Consensus 29 ~kiI~llGp--PGsGKgTq---a~~L 49 (217)
T 3umf_A 29 AKVIFVLGG--PGSGKGTQ---CEKL 49 (217)
T ss_dssp CEEEEEECC--TTCCHHHH---HHHH
T ss_pred CcEEEEECC--CCCCHHHH---HHHH
Confidence 455788999 999 9888 7777
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=35.90 E-value=23 Score=30.66 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=14.5
Q ss_pred HhhcCCCCCceEEEEccchhh
Q psy3629 277 ILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 277 ~f~~a~~~~p~iif~DeiD~~ 297 (358)
+|+.+.. ...+|+|||+.-+
T Consensus 94 ~~~~~~~-~~dvViIDEaQF~ 113 (214)
T 2j9r_A 94 IFKHITE-EMDVIAIDEVQFF 113 (214)
T ss_dssp GGGGCCS-SCCEEEECCGGGS
T ss_pred HHHHHhc-CCCEEEEECcccC
Confidence 3666653 3579999999874
No 282
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=35.89 E-value=43 Score=31.14 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=41.9
Q ss_pred CeEEEEecCCCCCcchhhcCCCCCce-------EEEecCCCHH----HHHHHHHHHHhccccccc----cCchhhHHHHH
Q psy3629 9 NILVIGMTNRRDMIDEALLRPGRLEL-------QMEISLPNED----GRVQILQIHTAKMRSYKK----LADDVNLKELA 73 (358)
Q Consensus 9 ~V~vI~aTN~p~~LD~Al~R~GRfd~-------~I~v~~P~~~----~R~~il~~~l~~~~~~~~----~~~~~~l~~la 73 (358)
++-+|+|||+ .+. .....|+|.. .+.+.+|... +...+.++++..+..... ..++.-++.|.
T Consensus 263 ~~rii~at~~--~l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 263 DIRVISATNK--NLE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp CCEEEEEESS--CHH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred eeEEEEecCC--CHH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 5779999996 232 3344567754 3444455444 445666777765431111 12223333333
Q ss_pred Hhc-CCCCHHHHHHHHHHHHH
Q psy3629 74 ALT-KNFSGAELEGLVRAAQS 93 (358)
Q Consensus 74 ~~t-~g~sgadi~~l~~~A~~ 93 (358)
... +| ...+++++++.|+.
T Consensus 340 ~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 340 KQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp TCCCTT-HHHHHHHHHHHHHH
T ss_pred hCCCCc-HHHHHHHHHHHHHH
Confidence 221 21 34677777777653
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=35.72 E-value=16 Score=29.82 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=16.8
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
-+++.|+ ||+ ||.+ ++.+...
T Consensus 3 ~I~i~G~--~GsGKsT~---~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGI--PGVGKSTV---LAKVKEI 24 (194)
T ss_dssp EEEEEEC--TTSCHHHH---HHHHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHHHH
Confidence 4789999 999 9998 7776443
No 284
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=35.50 E-value=53 Score=28.14 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCC-CCCEEEEEec
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVER-LNNILVIGMT 337 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~-~~~v~vi~aT 337 (358)
.++++++....+..... -..-.+|++||+|.+... + ....+..++..+.-... ..+++++-||
T Consensus 154 vv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~--------~~~~~~~i~~~~~~~~~~~~q~l~~SAT 218 (253)
T 1wrb_A 154 LVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDM-G--------FEPQIRKIIEESNMPSGINRQTLMFSAT 218 (253)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHT-T--------CHHHHHHHHHSSCCCCGGGCEEEEEESS
T ss_pred EEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhC-c--------hHHHHHHHHhhccCCCCCCcEEEEEEEe
Confidence 45677777665544321 234468999999998754 1 12335556664432221 2345555555
No 285
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=35.24 E-value=17 Score=30.87 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCeEEEEecCCCCCcchhhcCCCCCceEEEecCCCHHH
Q psy3629 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDG 45 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~Al~R~GRfd~~I~v~~P~~~~ 45 (358)
.++-+|.+|+.+..||.++++ |++.+++++.|....
T Consensus 122 ~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 122 QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGM 157 (199)
T ss_dssp TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCC
T ss_pred CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCc
Confidence 356778888999999999998 999999998765443
No 286
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=35.05 E-value=14 Score=34.64 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=16.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
..-+++.|| +|+ ||.+ .+.+.
T Consensus 136 g~~i~ivG~--~GsGKTTl---l~~l~ 157 (372)
T 2ewv_A 136 MGLILVTGP--TGSGKSTT---IASMI 157 (372)
T ss_dssp SEEEEEECS--SSSSHHHH---HHHHH
T ss_pred CCEEEEECC--CCCCHHHH---HHHHH
Confidence 345899999 999 9988 55553
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=34.82 E-value=7.4 Score=33.00 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=15.4
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+++.|+ ||+ ||.+ ++.+.
T Consensus 3 I~l~G~--~GsGKsT~---a~~L~ 21 (214)
T 1e4v_A 3 IILLGA--PVAGKGTQ---AQFIM 21 (214)
T ss_dssp EEEEES--TTSSHHHH---HHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHH
Confidence 789999 999 9998 77764
No 288
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=34.72 E-value=12 Score=37.77 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=11.4
Q ss_pred eeeeccCCCCc-hhhh
Q psy3629 182 VLLEVDKVPTD-ELSL 196 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l 196 (358)
.|+.|| ||| ||..
T Consensus 208 ~lI~GP--PGTGKT~t 221 (646)
T 4b3f_X 208 AIIHGP--PGTGKTTT 221 (646)
T ss_dssp EEEECC--TTSCHHHH
T ss_pred eEEECC--CCCCHHHH
Confidence 589999 999 9865
No 289
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=33.16 E-value=17 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=14.2
Q ss_pred HHhhcCCCCCceEEEEccchhh
Q psy3629 276 IILEAGPNSGLHIIIFDEIDAI 297 (358)
Q Consensus 276 ~~f~~a~~~~p~iif~DeiD~~ 297 (358)
.+++.+.. ...+|++||+.-+
T Consensus 73 ~i~~~~~~-~~dvViIDEaqfl 93 (191)
T 1xx6_A 73 EILKYFEE-DTEVIAIDEVQFF 93 (191)
T ss_dssp HHHHHCCT-TCSEEEECSGGGS
T ss_pred HHHHHHhc-cCCEEEEECCCCC
Confidence 34665553 3579999998774
No 290
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.05 E-value=11 Score=33.08 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=17.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
+.-+++.|+ ||+ ||.+ ++.+..
T Consensus 4 ~~lIvl~G~--pGSGKSTl---a~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGL--PGVGKSTF---SKNLAK 26 (260)
T ss_dssp CEEEEEECC--TTSSHHHH---HHHHHH
T ss_pred CEEEEEEcC--CCCCHHHH---HHHHHH
Confidence 345899999 999 9999 877743
No 291
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=32.76 E-value=63 Score=31.27 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=22.6
Q ss_pred CCchhHHHHHHhhcC-CCCCceEEEEccchhhhh
Q psy3629 267 KNTSEFLCTIILEAG-PNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~ 299 (358)
.++.|.....+.... ......+|+|||++.+..
T Consensus 240 v~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~ 273 (508)
T 3fho_A 240 IGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273 (508)
T ss_dssp EECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTT
T ss_pred EECHHHHHHHHHcCCccccCCCEEEEechhhhcc
Confidence 467777766554433 234567999999999864
No 292
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=32.10 E-value=43 Score=30.02 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCCchhHHHHHHhhc--CCCCCceEEEEccchhhhh
Q psy3629 266 PKNTSEFLCTIILEA--GPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~--a~~~~p~iif~DeiD~~~~ 299 (358)
.++++++....+... ..-..-.+|+|||+|.+..
T Consensus 214 lV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 214 VIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp EEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred EEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 457788877666442 1223456899999999975
No 293
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=31.99 E-value=8.9 Score=32.89 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=15.2
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+++.|+ ||+ ||.+ ++.+.
T Consensus 3 I~l~G~--~GsGKsT~---a~~La 21 (223)
T 2xb4_A 3 ILIFGP--NGSGKGTQ---GNLVK 21 (223)
T ss_dssp EEEECC--TTSCHHHH---HHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHH
Confidence 689999 999 9998 77663
No 294
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=31.80 E-value=79 Score=26.27 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=34.4
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecC
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTN 338 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn 338 (358)
.++++++....+..... .....+|+|||+|.+... + ....+..++..+. ...+++++-||=
T Consensus 135 iv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~--------~~~~l~~i~~~~~---~~~~~i~lSAT~ 196 (224)
T 1qde_A 135 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-G--------FKEQIYQIFTLLP---PTTQVVLLSATM 196 (224)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT-T--------CHHHHHHHHHHSC---TTCEEEEEESSC
T ss_pred EEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhh-h--------hHHHHHHHHHhCC---ccCeEEEEEeec
Confidence 34677777665554322 244579999999998654 1 1233445555543 223455555553
No 295
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=31.69 E-value=12 Score=32.65 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=18.2
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
+.-+++.|| ||+ ||.+ ++.+..
T Consensus 32 ~~~i~l~G~--~GsGKSTl---a~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQ--SGAGKTTI---HRIKQK 54 (253)
T ss_dssp CEEEEEESC--GGGTTHHH---HHHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHHH
Confidence 456899999 999 9999 877743
No 296
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=31.52 E-value=26 Score=37.96 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.0
Q ss_pred CCCchhHHHHHHhhcCCC-CCceEEEEccchhhhh
Q psy3629 266 PKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICK 299 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~ 299 (358)
.++++|...+.++..... ..-..|+|||+|.+..
T Consensus 270 lV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 270 LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp EEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred EEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 457888888888775442 3457999999998854
No 297
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=31.22 E-value=17 Score=30.11 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=17.1
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
-+.|.|+ ||+ ||.+ ++.+.+.
T Consensus 6 ~I~l~G~--~GsGKsT~---~~~L~~~ 27 (204)
T 2v54_A 6 LIVFEGL--DKSGKTTQ---CMNIMES 27 (204)
T ss_dssp EEEEECC--TTSSHHHH---HHHHHHT
T ss_pred EEEEEcC--CCCCHHHH---HHHHHHH
Confidence 4789999 999 9999 7777443
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=31.00 E-value=9.4 Score=30.99 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=16.4
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+.+.|| ||+ ||.+ ++.+.
T Consensus 9 ~~i~l~G~--~GsGKSTl---~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGV--SGSGKSAV---ASEVA 29 (175)
T ss_dssp EEEEEECS--TTSCHHHH---HHHHH
T ss_pred cEEEEEcC--CCCCHHHH---HHHHH
Confidence 45889999 999 9998 77663
No 299
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=30.68 E-value=24 Score=32.73 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=15.9
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-+++.|| +|+ ||.+ +..+.
T Consensus 42 lIvI~GP--TgsGKTtL---a~~LA 61 (339)
T 3a8t_A 42 LLVLMGA--TGTGKSRL---SIDLA 61 (339)
T ss_dssp EEEEECS--TTSSHHHH---HHHHH
T ss_pred eEEEECC--CCCCHHHH---HHHHH
Confidence 4889999 999 9999 66663
No 300
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 3tm7_B 1aw8_B 1pyu_A 3tm7_A 1aw8_A
Probab=30.36 E-value=32 Score=27.56 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=17.4
Q ss_pred hhcCCCCCceEEEEccchhhhhh
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~ 300 (358)
.+.|+...|.|||+||=-.+...
T Consensus 112 ~~E~~~~~P~VV~vd~~N~i~~~ 134 (143)
T 1pqh_A 112 DEEARTWRPNVAYFEGDNEMKRT 134 (143)
T ss_dssp HHHHTTCCCEEEEEETTTEECC-
T ss_pred HHHhccCCCeEEEECCCCCEEEE
Confidence 44677889999999987766544
No 301
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=29.86 E-value=20 Score=29.85 Aligned_cols=18 Identities=17% Similarity=-0.058 Sum_probs=15.3
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|| +|+ ||.+ ++.+
T Consensus 4 ~i~l~G~--~GsGKST~---~~~L 22 (206)
T 1jjv_A 4 IVGLTGG--IGSGKTTI---ANLF 22 (206)
T ss_dssp EEEEECS--TTSCHHHH---HHHH
T ss_pred EEEEECC--CCCCHHHH---HHHH
Confidence 3678999 999 9999 7777
No 302
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=29.39 E-value=22 Score=31.83 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=17.8
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.-+++.|| ||+ ||.+ ++.+.
T Consensus 33 ~~livl~G~--sGsGKSTl---a~~L~ 54 (287)
T 1gvn_B 33 PTAFLLGGQ--PGSGKTSL---RSAIF 54 (287)
T ss_dssp CEEEEEECC--TTSCTHHH---HHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHH
Confidence 456899999 999 9999 88774
No 303
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=29.09 E-value=28 Score=32.29 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.6
Q ss_pred CceEEEEccchhhhhh
Q psy3629 285 GLHIIIFDEIDAICKA 300 (358)
Q Consensus 285 ~p~iif~DeiD~~~~~ 300 (358)
.+.+|+||-+..+...
T Consensus 156 g~~lIVIDyLqlm~~~ 171 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGS 171 (338)
T ss_dssp TEEEEEEEEEECCCTH
T ss_pred CCCEEEEechHHhcCC
Confidence 7899999999988654
No 304
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.95 E-value=46 Score=30.81 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred CC-ceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcc
Q psy3629 284 SG-LHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRD 341 (358)
Q Consensus 284 ~~-p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~ 341 (358)
.. |.+++|||.++=... .....+-.+|.++.. ..+ ||++|..++
T Consensus 303 ~~~~~~lllDEp~~~LD~---------~~~~~l~~~l~~~~~---~~~--vi~~th~~~ 347 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDE---------NRRAKLAEIFRKVKS---IPQ--MIIITHHRE 347 (371)
T ss_dssp SSCCSEEEEESTTTTCCH---------HHHHHHHHHHHHCCS---CSE--EEEEESCGG
T ss_pred cCCCCeEEEeCCCCcCCH---------HHHHHHHHHHHHhcc---CCe--EEEEEChHH
Confidence 56 889999999875433 223344455666532 122 455565565
No 305
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=28.55 E-value=72 Score=26.87 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=36.9
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
.+++++.....+..... ...-.+|++||+|.+... + .....+..++..+. ...+++.+-|| .|+.+.
T Consensus 146 iv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~-------~~~~~~~~i~~~~~---~~~~~l~lSAT-~~~~~~ 213 (230)
T 2oxc_A 146 AVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE-G-------SFQEQINWIYSSLP---ASKQMLAVSAT-YPEFLA 213 (230)
T ss_dssp EEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST-T-------SSHHHHHHHHHHSC---SSCEEEEEESC-CCHHHH
T ss_pred EEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC-c-------chHHHHHHHHHhCC---CCCeEEEEEec-cCHHHH
Confidence 34677776665433221 133458999999998654 1 12334555666554 22346666666 444443
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=28.39 E-value=21 Score=29.54 Aligned_cols=22 Identities=27% Similarity=0.027 Sum_probs=17.3
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
.-+.+.|+ ||+ ||.+ ++.+...
T Consensus 5 ~~I~i~G~--~GsGKsT~---~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGI--DGSGKSSQ---ATLLKDW 27 (213)
T ss_dssp EEEEEECC--TTSSHHHH---HHHHHHH
T ss_pred eEEEEEcC--CCCCHHHH---HHHHHHH
Confidence 34789999 999 9999 7777443
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=28.28 E-value=27 Score=30.04 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..++++.|| +|+ ||.+ |..+
T Consensus 34 g~~ilI~Gp--sGsGKStL---A~~L 54 (205)
T 2qmh_A 34 GLGVLITGD--SGVGKSET---ALEL 54 (205)
T ss_dssp TEEEEEECC--CTTTTHHH---HHHH
T ss_pred CEEEEEECC--CCCCHHHH---HHHH
Confidence 467999999 999 9988 6666
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=28.27 E-value=11 Score=31.09 Aligned_cols=19 Identities=5% Similarity=-0.015 Sum_probs=15.6
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
+.+.|+ ||+ ||.+ ++.+..
T Consensus 3 I~i~G~--~GsGKsT~---~~~L~~ 22 (205)
T 2jaq_A 3 IAIFGT--VGAGKSTI---SAEISK 22 (205)
T ss_dssp EEEECC--TTSCHHHH---HHHHHH
T ss_pred EEEECC--CccCHHHH---HHHHHH
Confidence 678999 999 9998 776643
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=28.16 E-value=18 Score=29.97 Aligned_cols=18 Identities=11% Similarity=-0.086 Sum_probs=15.4
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|+ +|+ ||.+ ++.+
T Consensus 3 ~i~i~G~--~GsGKSTl---~~~L 21 (204)
T 2if2_A 3 RIGLTGN--IGCGKSTV---AQMF 21 (204)
T ss_dssp EEEEEEC--TTSSHHHH---HHHH
T ss_pred EEEEECC--CCcCHHHH---HHHH
Confidence 3788999 999 9999 7777
No 310
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=28.12 E-value=19 Score=34.18 Aligned_cols=20 Identities=10% Similarity=-0.029 Sum_probs=17.5
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+.-+++.|+ ||+ ||.+ ++.+
T Consensus 258 ~~lIil~G~--pGSGKSTl---a~~L 278 (416)
T 3zvl_A 258 PEVVVAVGF--PGAGKSTF---IQEH 278 (416)
T ss_dssp CCEEEEESC--TTSSHHHH---HHHH
T ss_pred CEEEEEECC--CCCCHHHH---HHHH
Confidence 455889999 999 9999 9888
No 311
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=27.96 E-value=1.1e+02 Score=25.29 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCCchhHHHHHHhhcC-CCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 266 PKNTSEFLCTIILEAG-PNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a-~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
.++++|.....+-... .-.....|++||+|.+.... .....+..++..+. ...+++++-|| -+..+.
T Consensus 138 ~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~--------~~~~~~~~i~~~~~---~~~~~i~~SAT-~~~~~~ 205 (220)
T 1t6n_A 138 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL--------DMRRDVQEIFRMTP---HEKQVMMFSAT-LSKEIR 205 (220)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSH--------HHHHHHHHHHHTSC---SSSEEEEEESC-CCTTTH
T ss_pred EEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhccc--------CcHHHHHHHHHhCC---CcCeEEEEEee-cCHHHH
Confidence 3456666655443322 12445789999999986421 12344555555443 22345555555 344333
No 312
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=27.20 E-value=66 Score=28.50 Aligned_cols=29 Identities=3% Similarity=-0.209 Sum_probs=18.7
Q ss_pred EEEEccchhhhhhcCCCCCCcchhhHHHHHHHHc
Q psy3629 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK 321 (358)
Q Consensus 288 iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ 321 (358)
++++|-+|++...+ . .....+.+.+++..
T Consensus 142 v~vidsldsl~~~~-~----~~~~~~~~~~ll~~ 170 (260)
T 3bs4_A 142 YGFAISMSGYLEVF-T----PEETLRYLETSAEV 170 (260)
T ss_dssp EEEEETGGGGGGTS-C----HHHHHHHHHHHHHH
T ss_pred EEEEeecchHHHHh-C----hhhHHHHHHHHHHh
Confidence 56999999998775 1 11334555666655
No 313
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=27.12 E-value=23 Score=29.16 Aligned_cols=20 Identities=10% Similarity=-0.012 Sum_probs=16.9
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
+.-+.+.|+ +|+ ||.+ ++.+
T Consensus 8 ~~~I~i~G~--~GsGKST~---~~~L 28 (203)
T 1uf9_A 8 PIIIGITGN--IGSGKSTV---AALL 28 (203)
T ss_dssp CEEEEEEEC--TTSCHHHH---HHHH
T ss_pred ceEEEEECC--CCCCHHHH---HHHH
Confidence 445889999 999 9999 8777
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=27.12 E-value=10 Score=31.75 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=17.0
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
.-+.+.|+ ||+ ||.+ ++.+.+
T Consensus 11 ~~I~l~G~--~GsGKST~---~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGL--DRSGKSTQ---SKLLVE 32 (212)
T ss_dssp CEEEEEES--TTSSHHHH---HHHHHH
T ss_pred CEEEEEcC--CCCCHHHH---HHHHHH
Confidence 34899999 999 9998 776644
No 315
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=26.56 E-value=37 Score=28.01 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=19.1
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccC
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMD 323 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld 323 (358)
..|.++++||.++-+.. ...+.+..+|.++.
T Consensus 85 ~~~~~llLDEp~a~LD~---------~~~~~~~~~l~~~~ 115 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDD---------ANVKRVADLIKESS 115 (173)
T ss_dssp SCCSEEEEESTTTTCCH---------HHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCccCCCH---------HHHHHHHHHHHHhc
Confidence 34569999999986543 22344445666553
No 316
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=26.40 E-value=1e+02 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccc
Q psy3629 284 SGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMID 344 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD 344 (358)
..|.|+++||..+-... .....+-.+|.++.. +.-||.+|-+++.++
T Consensus 240 ~~~~~lllDEp~~~LD~---------~~~~~l~~~l~~~~~-----~~~vi~~tH~~~~~~ 286 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDD---------YNAERFKRLLKENSK-----HTQFIVITHNKIVME 286 (322)
T ss_dssp SCCSEEEEESCCSSCCH---------HHHHHHHHHHHHHTT-----TSEEEEECCCTTGGG
T ss_pred CCCCEEEEeCCCCCCCH---------HHHHHHHHHHHHhcC-----CCeEEEEECCHHHHh
Confidence 46789999998775433 223334456666531 223455565565444
No 317
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.97 E-value=1.4e+02 Score=20.89 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHhccccccccCchhhHHHHHHhcCCCCHHHHHHHH
Q psy3629 48 QILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLV 88 (358)
Q Consensus 48 ~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~l~ 88 (358)
++|+.|+..+ ....+.|++.|+.++. +|+-+++...
T Consensus 19 e~L~~Yy~~h----k~L~EeDl~~L~~ksk-ms~qqvkdwF 54 (70)
T 2ys9_A 19 QPLERYWAAH----QQLRETDIPQLSQASR-LSTQQVLDWF 54 (70)
T ss_dssp HHHHHHHHHT----CCCCTTHHHHHHHHTT-CCHHHHHHHH
T ss_pred hHHHHHHHHh----cccchhhHHHHHHHhC-CCHHHHHHHH
Confidence 4566666554 4667889999999988 8888876654
No 318
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=25.49 E-value=2.2e+02 Score=25.08 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=47.3
Q ss_pred CCeEEEEecCCCCCcchh-------hcCCCCCceEEEecCCCHHHHHHHHHHHHhccccccccCchhhHHHHHHhcCCCC
Q psy3629 8 NNILVIGMTNRRDMIDEA-------LLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFS 80 (358)
Q Consensus 8 ~~V~vI~aTN~p~~LD~A-------l~R~GRfd~~I~v~~P~~~~R~~il~~~l~~~~~~~~~~~~~~l~~la~~t~g~s 80 (358)
.++.+|.+++....+... -.-.||+...++++..+.++-.++++..+.... ... .+...+...|.|+.
T Consensus 169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~-~~~~~i~~~t~G~P 243 (357)
T 2fna_A 169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD----IDF-KDYEVVYEKIGGIP 243 (357)
T ss_dssp TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT----CCC-CCHHHHHHHHCSCH
T ss_pred CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC----CCC-CcHHHHHHHhCCCH
Confidence 367677776653222211 001357778999999999999999988765321 111 12378899999976
Q ss_pred HHHHHHHHH
Q psy3629 81 GAELEGLVR 89 (358)
Q Consensus 81 gadi~~l~~ 89 (358)
.. +..++.
T Consensus 244 ~~-l~~~~~ 251 (357)
T 2fna_A 244 GW-LTYFGF 251 (357)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 53 555544
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=25.47 E-value=15 Score=29.96 Aligned_cols=19 Identities=11% Similarity=-0.031 Sum_probs=15.7
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
+.+.|+ ||+ ||.+ ++.+.+
T Consensus 3 I~l~G~--~GsGKsT~---~~~L~~ 22 (195)
T 2pbr_A 3 IAFEGI--DGSGKTTQ---AKKLYE 22 (195)
T ss_dssp EEEECS--TTSCHHHH---HHHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHHH
Confidence 678999 999 9998 777743
No 320
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.45 E-value=60 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=15.4
Q ss_pred hhcCCCCCceEEEEccchhhhh
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICK 299 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~ 299 (358)
|...+...|.++++||.++-+.
T Consensus 348 la~~~~~~~~~lllDEp~~~LD 369 (430)
T 1w1w_A 348 FAINSYQPSPFFVLDEVDAALD 369 (430)
T ss_dssp HHHHTSSCCSEEEESSTTTTCC
T ss_pred HHHhcCCCCCEEEeCCCcccCC
Confidence 4433345678999999988553
No 321
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=25.17 E-value=59 Score=34.77 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCchhHHHHHHhhcCCC-CCceEEEEccchhhhhh
Q psy3629 266 PKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICKA 300 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~~ 300 (358)
.+++.|...+.++..... ..-..|+|||++.+...
T Consensus 172 vV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 172 LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp EEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred EEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc
Confidence 457889888888765433 34468999999998543
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=24.97 E-value=26 Score=29.18 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=17.1
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
.-+++.|| ||+ ||.+ ++.+...
T Consensus 13 ~~i~l~G~--sGsGKsTl---~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGP--SGVGKGTL---IKKVLSE 35 (204)
T ss_dssp CCEEEECC--TTSCHHHH---HHHHHHH
T ss_pred CEEEEECC--CCCCHHHH---HHHHHHh
Confidence 34789999 999 9998 7766443
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=24.41 E-value=40 Score=27.20 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=17.1
Q ss_pred cceeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 178 GLVSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 178 ~~~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
....+++.|+ +|+ ||++ ..++
T Consensus 47 ~~~~i~vvG~--~g~GKSsl---l~~l 68 (193)
T 2ged_A 47 YQPSIIIAGP--QNSGKTSL---LTLL 68 (193)
T ss_dssp CCCEEEEECC--TTSSHHHH---HHHH
T ss_pred CCCEEEEECC--CCCCHHHH---HHHH
Confidence 3456999999 999 9998 6665
No 324
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=23.76 E-value=15 Score=30.38 Aligned_cols=18 Identities=17% Similarity=0.102 Sum_probs=15.3
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|+ +|+ ||.+ ++.+
T Consensus 4 ~i~i~G~--~GsGKst~---~~~l 22 (208)
T 3ake_A 4 IVTIDGP--SASGKSSV---ARRV 22 (208)
T ss_dssp EEEEECS--TTSSHHHH---HHHH
T ss_pred EEEEECC--CCCCHHHH---HHHH
Confidence 3788999 999 9999 7777
No 325
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=23.65 E-value=1.2e+02 Score=27.77 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=23.3
Q ss_pred CCCchhHHHHHHhhcCC-CCCceEEEEccchhhhhh
Q psy3629 266 PKNTSEFLCTIILEAGP-NSGLHIIIFDEIDAICKA 300 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~-~~~p~iif~DeiD~~~~~ 300 (358)
.+++++.....+..... -..-.+|+|||+|.+...
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~ 190 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDM 190 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHT
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhcc
Confidence 34677777766554322 234468999999998754
No 326
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=23.11 E-value=30 Score=28.70 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=29.3
Q ss_pred eEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCcccc
Q psy3629 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMI 343 (358)
Q Consensus 287 ~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~i 343 (358)
.+||+|==...+-.|-...........++...+.+.+.+......++|-++..++.+
T Consensus 127 ~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~~~~~~e~ 183 (200)
T 4eun_A 127 DFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLDLRQPPEQL 183 (200)
T ss_dssp EEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEETTSCHHHH
T ss_pred EEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEECCCCHHHH
Confidence 577787444444444221111111234455666666666554456777776555543
No 327
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=23.03 E-value=16 Score=31.97 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=16.3
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.-+.+.|| ||+ ||.+ ++.+
T Consensus 10 ~~i~i~G~--~GsGKsTl---a~~l 29 (233)
T 3r20_A 10 LVVAVDGP--AGTGKSSV---SRGL 29 (233)
T ss_dssp CEEEEECC--TTSSHHHH---HHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHH
Confidence 45889999 999 9999 7777
No 328
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=22.79 E-value=16 Score=30.82 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=15.8
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
-+.+.|| +|+ ||.+ ++.+.
T Consensus 7 ~i~i~G~--~GsGKSTl---~~~L~ 26 (227)
T 1cke_A 7 VITIDGP--SGAGKGTL---CKAMA 26 (227)
T ss_dssp EEEEECC--TTSSHHHH---HHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHH
Confidence 4789999 999 9998 77664
No 329
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=22.43 E-value=32 Score=28.08 Aligned_cols=18 Identities=0% Similarity=-0.143 Sum_probs=15.2
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
+.+.|| +|+ ||.+ ++.+.
T Consensus 5 i~l~G~--~GaGKSTl---~~~L~ 23 (189)
T 2bdt_A 5 YIITGP--AGVGKSTT---CKRLA 23 (189)
T ss_dssp EEEECS--TTSSHHHH---HHHHH
T ss_pred EEEECC--CCCcHHHH---HHHHh
Confidence 678999 999 9999 77773
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.39 E-value=32 Score=28.05 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=15.6
Q ss_pred eeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 182 VLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 182 ~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
+.++|+ ||+ ||.+ ++.+.+
T Consensus 3 I~l~G~--~GsGKsT~---~~~L~~ 22 (197)
T 2z0h_A 3 ITFEGI--DGSGKSTQ---IQLLAQ 22 (197)
T ss_dssp EEEECS--TTSSHHHH---HHHHHH
T ss_pred EEEECC--CCCCHHHH---HHHHHH
Confidence 678999 999 9998 777643
No 331
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=22.20 E-value=17 Score=32.08 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=16.0
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
..+.|.|+ +|+ ||.+ ++.+
T Consensus 49 ~~i~l~G~--~GsGKSTl---~~~L 68 (250)
T 3nwj_A 49 RSMYLVGM--MGSGKTTV---GKIM 68 (250)
T ss_dssp CCEEEECS--TTSCHHHH---HHHH
T ss_pred CEEEEECC--CCCCHHHH---HHHH
Confidence 35899999 999 9999 7766
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=21.91 E-value=33 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=16.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
.-+.+.|+ ||+ ||.+ ++.+.+
T Consensus 10 ~~I~l~G~--~GsGKsT~---~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGV--DRAGKSTQ---SRKLVE 31 (215)
T ss_dssp CEEEEEES--TTSSHHHH---HHHHHH
T ss_pred cEEEEECC--CCCCHHHH---HHHHHH
Confidence 34899999 999 9998 776644
No 333
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=21.88 E-value=22 Score=30.05 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=15.3
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|| +|+ |+.+ ++.+
T Consensus 8 iI~i~g~--~GsGk~ti---~~~l 26 (201)
T 3fdi_A 8 IIAIGRE--FGSGGHLV---AKKL 26 (201)
T ss_dssp EEEEEEC--TTSSHHHH---HHHH
T ss_pred EEEEeCC--CCCCHHHH---HHHH
Confidence 3788999 999 9998 7776
No 334
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=21.70 E-value=22 Score=29.90 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=15.0
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
-+.+.|+ +|+ ||.+ ++.+
T Consensus 5 ~i~i~G~--~gsGkst~---~~~l 23 (219)
T 2h92_A 5 NIALDGP--AAAGKSTI---AKRV 23 (219)
T ss_dssp CEEEECC--TTSSHHHH---HHHH
T ss_pred EEEEECC--CCCCHHHH---HHHH
Confidence 4789999 999 9998 6665
No 335
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.50 E-value=27 Score=29.34 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=15.9
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhh
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAAN 203 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~ 203 (358)
.-+.+.|+ +|+ ||.+ ++.+
T Consensus 5 ~~I~i~G~--~GSGKST~---~~~L 24 (218)
T 1vht_A 5 YIVALTGG--IGSGKSTV---ANAF 24 (218)
T ss_dssp EEEEEECC--TTSCHHHH---HHHH
T ss_pred eEEEEECC--CCCCHHHH---HHHH
Confidence 34789999 999 9998 7777
No 336
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=21.33 E-value=34 Score=28.33 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=17.3
Q ss_pred ceeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 179 LVSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 179 ~~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
..-+.+.|| +|+ ||.+ ++.+..
T Consensus 25 g~~i~l~G~--sGsGKSTl---~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGL--SGSGKSTL---ACALNQ 47 (200)
T ss_dssp CEEEEEECS--TTSSHHHH---HHHHHH
T ss_pred CeEEEEECC--CCCCHHHH---HHHHHH
Confidence 345788999 999 9999 777743
No 337
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=21.16 E-value=29 Score=31.86 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=16.3
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANK 204 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~ 204 (358)
.-+++.|| +|+ ||.+ +..+.
T Consensus 11 ~~i~i~Gp--tgsGKt~l---a~~La 31 (316)
T 3foz_A 11 KAIFLMGP--TASGKTAL---AIELR 31 (316)
T ss_dssp EEEEEECC--TTSCHHHH---HHHHH
T ss_pred cEEEEECC--CccCHHHH---HHHHH
Confidence 44788999 999 9999 77763
No 338
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=21.08 E-value=96 Score=26.14 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=27.6
Q ss_pred hhcCCCCCceEEEEccchhhhhhcCCCCCCcchhhHHHHHHHHccCCCCCCCCEEEEEecCCccccch
Q psy3629 278 LEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345 (358)
Q Consensus 278 f~~a~~~~p~iif~DeiD~~~~~r~~~~~~~~~~~~~~~~lL~~ld~~~~~~~v~vi~aTn~~~~iD~ 345 (358)
+.+|-...|.||++||--+- ....+-.+|.++ .. +..|| +|-.++.++.
T Consensus 115 lAraL~~~p~lllLDEPts~-------------~~~~l~~~l~~l---~~--g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNT-------------TPAQMKMFLTRL---GF--GSKMV-VTGDITQVDL 163 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGC-------------CHHHHHHHHTTB---CT--TCEEE-EEEC------
T ss_pred HHHHHhcCCCEEEEeCCccc-------------cHHHHHHHHHHh---cC--CCEEE-EECCHHHHhC
Confidence 45566689999999986553 233445666666 11 34566 7877776663
No 339
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=20.98 E-value=1.4e+02 Score=24.31 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=16.6
Q ss_pred CCchhHHHHHHhhcC-------CCCCceEEEEccchhhh
Q psy3629 267 KNTSEFLCTIILEAG-------PNSGLHIIIFDEIDAIC 298 (358)
Q Consensus 267 ~~~~e~~~~~~f~~a-------~~~~p~iif~DeiD~~~ 298 (358)
+++.+.....+.... ......+|+|||+|.+.
T Consensus 137 v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~ 175 (216)
T 3b6e_A 137 ISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTN 175 (216)
T ss_dssp EEEHHHHHHHHHC-------CCCGGGCSEEEETTC----
T ss_pred EECHHHHHHHHhccCcccccccchhcccEEEEECchhhc
Confidence 355666655554432 22445799999999985
No 340
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=20.86 E-value=35 Score=30.25 Aligned_cols=20 Identities=15% Similarity=-0.031 Sum_probs=16.5
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
-+++.|+ ||+ ||.+ ++.+.+
T Consensus 4 ~I~l~G~--~GsGKST~---a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGC--PGSGKSTW---AREFIA 24 (301)
T ss_dssp EEEEECC--TTSSHHHH---HHHHHH
T ss_pred EEEEECC--CCCCHHHH---HHHHHH
Confidence 4789999 999 9998 777743
No 341
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.80 E-value=37 Score=28.18 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=16.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
.-+.+.|+ +|+ ||.+ ++.+..
T Consensus 22 ~~i~i~G~--~GsGKSTl---~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGV--TNSGKTTL---AKNLQK 43 (207)
T ss_dssp EEEEEEES--TTSSHHHH---HHHHHT
T ss_pred eEEEEECC--CCCCHHHH---HHHHHH
Confidence 44789999 999 9999 777743
No 342
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=20.59 E-value=28 Score=33.93 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.2
Q ss_pred CCceEEEEccchhhhh
Q psy3629 284 SGLHIIIFDEIDAICK 299 (358)
Q Consensus 284 ~~p~iif~DeiD~~~~ 299 (358)
....+||+|++-.++.
T Consensus 244 G~~VLl~~D~itR~a~ 259 (473)
T 1sky_E 244 GQDGLLFIDNIFRFTQ 259 (473)
T ss_dssp CCEEEEEEECTHHHHH
T ss_pred CCcEEEEeccHHHHHH
Confidence 4568999999998874
No 343
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=20.53 E-value=78 Score=33.78 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCchhHHHHHHhhcCCC-CCceEEEEccchhhhh
Q psy3629 266 PKNTSEFLCTIILEAGPN-SGLHIIIFDEIDAICK 299 (358)
Q Consensus 266 ~~~~~e~~~~~~f~~a~~-~~p~iif~DeiD~~~~ 299 (358)
.+.++|.....++..... .....|+|||++.+..
T Consensus 127 lV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d 161 (997)
T 4a4z_A 127 LIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND 161 (997)
T ss_dssp EEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT
T ss_pred EEECHHHHHHHHHhCchhhcCCCEEEEECcccccc
Confidence 347788888777765432 4567999999997654
No 344
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=20.33 E-value=93 Score=32.12 Aligned_cols=29 Identities=28% Similarity=0.223 Sum_probs=24.5
Q ss_pred CchhHHHHHHhhcCCCCCceEEEEccchh
Q psy3629 268 NTSEFLCTIILEAGPNSGLHIIIFDEIDA 296 (358)
Q Consensus 268 ~~~e~~~~~~f~~a~~~~p~iif~DeiD~ 296 (358)
.+.+...+.++..+.-..+.+|+|||++.
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 56777888888877788999999999995
No 345
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=20.14 E-value=38 Score=27.54 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.7
Q ss_pred eeeeeeccCCCCc-hhhhhhHHhhhcc
Q psy3629 180 VSVLLEVDKVPTD-ELSLSNFAAANKD 205 (358)
Q Consensus 180 ~~~ll~gp~~pg~-kt~l~~~a~~~~~ 205 (358)
.-+.+.|+ ||+ ||.+ ++.+..
T Consensus 14 ~~i~l~G~--~GsGKsT~---~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGL--PGSGKTTI---ATRLAD 35 (186)
T ss_dssp EEEEEECC--TTSSHHHH---HHHHHH
T ss_pred cEEEEEcC--CCCCHHHH---HHHHHH
Confidence 45889999 999 9998 766643
No 346
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=20.05 E-value=38 Score=27.82 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=16.6
Q ss_pred eeeeeccCCCCc-hhhhhhHHhhhccc
Q psy3629 181 SVLLEVDKVPTD-ELSLSNFAAANKDD 206 (358)
Q Consensus 181 ~~ll~gp~~pg~-kt~l~~~a~~~~~~ 206 (358)
-+.+.|| +|+ ||.+ ++.+...
T Consensus 8 ~i~l~G~--~GsGKSTl---~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGP--SGVGKGTV---RKRIFED 29 (207)
T ss_dssp EEEEECS--TTSCHHHH---HHHHHHC
T ss_pred EEEEECC--CCCCHHHH---HHHHHHh
Confidence 4788999 999 9998 7766443
Done!