RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3629
(358 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 112 bits (281), Expect = 1e-29
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 19/128 (14%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E I+VI TNR D++D ALLRPGR + Q+ + LP+ GR QIL++H ++
Sbjct: 142 MDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--- 198
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITR 120
LA D++ +A T FSGA+L LV A A + ++
Sbjct: 199 -PLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV---------------VSM 242
Query: 121 ADFLHALE 128
+F A +
Sbjct: 243 VEFEKAKD 250
Score = 89.5 bits (222), Expect = 3e-21
Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGTA-GGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
II DEIDA+ + RG GG + +NQ+L +MDG E I+VI TNR D++D A
Sbjct: 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 166
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 167 LLRPGRFD 174
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 107 bits (269), Expect = 5e-28
Identities = 49/126 (38%), Positives = 63/126 (50%), Gaps = 19/126 (15%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG E+ I+V+ TNR D++D ALLRPGR + Q+ I P+ GR QIL+IH
Sbjct: 139 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA----RG 194
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITR 120
K LA+DV+L LA T F GA+LE L+ A A + IT
Sbjct: 195 KPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRK---------------ITM 239
Query: 121 ADFLHA 126
D A
Sbjct: 240 KDLEEA 245
Score = 89.9 bits (223), Expect = 2e-21
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 288 IIIFDEIDAICKARGT-AGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDEA 346
I+ DEIDA+ + RG+ GG + +NQLL +MDG E+ I+V+ TNR D++D A
Sbjct: 104 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 163
Query: 347 LLRPGRLE 354
LLRPGR +
Sbjct: 164 LLRPGRFD 171
>d1qcsa1 b.52.2.3 (A:0-85) N-terminal domain of NSF-N, NSF-Nn
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 86
Score = 97.5 bits (243), Expect = 5e-26
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 184 LEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSL 243
++ + PTDELSLSN A ++ D+ + +H+ V T P YIFTL P V G + FSL
Sbjct: 7 MQAARCPTDELSLSNCAVVSEKDY-QSGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSL 65
Query: 244 LQRKWAELSLHQDIDVKPFFF 264
QRKWA LS+ Q+I+V + F
Sbjct: 66 PQRKWAGLSIGQEIEVALYSF 86
>d1cr5a1 b.52.2.3 (A:26-107) N-terminal domain of NSF-N, NSF-Nn
{Baker's yeast (Saccharomyces cerevisiae), sec18p
[TaxId: 4932]}
Length = 82
Score = 85.9 bits (213), Expect = 9e-22
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 184 LEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSL 243
L+V P + +L+N AA + +DF + +I + ++FT +S D+ G IGF+
Sbjct: 4 LKVSNCPNNSYALANVAAVSPNDFPNN-IYIII----DNLFVFTTRHSNDIPPGTIGFNG 58
Query: 244 LQRKWAELSLHQDIDVKPF 262
QR W SL+QD+ K F
Sbjct: 59 NQRTWGGWSLNQDVQAKAF 77
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 88.7 bits (219), Expect = 6e-21
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 5/129 (3%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
MDG+ N+ +IG TNR D+ID A+LRPGRL+ + I LP+E RV IL+ + K
Sbjct: 138 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS--- 194
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQA-LEKLCIT 119
+A DV+L+ LA +T FSGA+L + + A A+ I++ + E + Q + +
Sbjct: 195 -PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 253
Query: 120 RADFLHALE 128
D + +
Sbjct: 254 EDDPVPEIR 262
Score = 74.1 bits (181), Expect = 1e-15
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 287 HIIIFDEIDAICKARGT-AGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
++ FDE+D+I KARG G G D V+NQ+L++MDG+ N+ +IG TNR D+ID
Sbjct: 102 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 161
Query: 346 ALLRPGRLE 354
A+LRPGRL+
Sbjct: 162 AILRPGRLD 170
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 74.3 bits (181), Expect = 7e-16
Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 8 NNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSYKKLADDV 67
+++V+ TNR + ID AL R GR + +++I +P+ GR++ILQIHT M+ DDV
Sbjct: 139 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA----DDV 194
Query: 68 NLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVE--VDPQALEKLCITRADFLH 125
+L+++A T GA+L L A A+ + + + + +D + + L +T DF
Sbjct: 195 DLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRW 254
Query: 126 ALE 128
AL
Sbjct: 255 ALS 257
Score = 42.7 bits (99), Expect = 3e-05
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVV 315
I+ SE E + II DE+DAI R G V +V
Sbjct: 68 LINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG--EVERRIV 125
Query: 316 NQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLE 354
+QLL+ MDG+++ +++V+ TNR + ID AL R GR +
Sbjct: 126 SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD 164
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 70.8 bits (173), Expect = 2e-14
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNR---RDMID 344
+I+ D + + A G + G LLS + + +VI N D I
Sbjct: 185 VIVIDSLKNVIGAAGGNTTS-GGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIV 243
Query: 345 EALLRPGRLE 354
E + R
Sbjct: 244 ELVKEASRSN 253
Score = 67.8 bits (165), Expect = 2e-13
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 1 MDGVERLNNILVIGMTNR---RDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKM 57
+ + +VI N D I E + R + + DG Q+L +
Sbjct: 218 IGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGL 277
Query: 58 -RSYKKLADDVNLKELAA 74
R L +
Sbjct: 278 QRLTHTLQTSYGEHSVLT 295
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 58.8 bits (141), Expect = 1e-10
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 13/113 (11%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
+ +L+IG T+R+D++ E + I +PN Q+L+
Sbjct: 135 KKAPPQGRKLLIIGTTSRKDVLQEMEML-NA--FSTTIHVPNIATGEQLLEALELLGNF- 190
Query: 61 KKLADDVNLKELAALTKNFSGAE-----LEGLVRAAQSCAMNRLIKATNKVEV 108
D +A K L + + Q R+ K +
Sbjct: 191 ----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 239
Score = 48.0 bits (113), Expect = 6e-07
Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 57/220 (25%)
Query: 140 ESLEHFLSRGILNWGTPVQECLEAGRIFIQQSKDTESSGLVSVLLE----VDKVPTDELS 195
E ++ GI+ WG PV L+ G + +QQ+K+++ + LVSVLLE K
Sbjct: 1 EDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGK------- 53
Query: 196 LSNFAAANKDDFVEDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQ 255
+ AA ++ ++ F SPD GF + Q
Sbjct: 54 -TALAAKIAEES---------------NFPFIKICSPDKMIGFSETAKCQAMKKIFDDAY 97
Query: 256 DIDVKPFFFNPKNTSEFLCTIILEAGPNSGLHIIIFDEIDAICKARGTAGGNTGVHDTVV 315
+ D+I+ + + + +
Sbjct: 98 KSQLSCVVV---------------------------DDIERLLDYVPIGPRFSNLVLQAL 130
Query: 316 NQLLSKMDGVERLNNILVIGMTNRRDMIDEALLRPGRLEV 355
L + +L+IG T+R+D++ E +
Sbjct: 131 LVL--LKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFST 167
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 52.3 bits (124), Expect = 2e-08
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 24/128 (18%)
Query: 1 MDGVERLNNILVIGMTNRRDMIDEALLRPGRLELQMEISLPNEDGRVQILQIHTAKMRSY 60
M + +G R + + R + + ++ + +H
Sbjct: 140 MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHK------ 193
Query: 61 KKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLIKATNKVEVDPQALEKLCITR 120
L D+ L K +S E + L K N+ ++
Sbjct: 194 TGLFSDIRL-YNREGVKLYSSLETPSISPKET------LEKELNRK-----------VSG 235
Query: 121 ADFLHALE 128
+ LE
Sbjct: 236 KEIQPTLE 243
Score = 39.6 bits (91), Expect = 3e-04
Identities = 8/81 (9%), Positives = 16/81 (19%), Gaps = 9/81 (11%)
Query: 287 HIIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSK---------MDGVERLNNILVIGMT 337
+ + TG V Q + M + +G
Sbjct: 96 RMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTI 155
Query: 338 NRRDMIDEALLRPGRLEVSEI 358
R + + R +
Sbjct: 156 ERYETMYADDPMTARATPKQA 176
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 34.4 bits (78), Expect = 0.015
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 288 IIIFDEIDAICKARGTAGGNTGVHDTVVNQLLSKMDG--------VERLNNILVIGMTNR 339
I+ DEID ICK +G + + V LL ++G + + ++IL I
Sbjct: 118 IVFIDEIDKICKKGEYSGADVS-REGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF 176
Query: 340 RDMIDEALLRP--GRLEV 355
+ L+ GRL +
Sbjct: 177 QVARPSDLIPELQGRLPI 194
Score = 27.1 bits (59), Expect = 3.1
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 2 DGVERLNNILVIGMTNRRDMIDEALLRP--GRLELQMEISLPNEDGRVQILQIHTAKMRS 59
G+ + ++IL I + L+ GRL +++E++ + +IL A +
Sbjct: 160 HGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTE 219
Query: 60 YKKLA 64
K
Sbjct: 220 QYKAL 224
>d1k8ta_ e.41.1.1 (A:) Adenylylcyclase toxin (the edema factor)
{Bacillus anthracis [TaxId: 1392]}
Length = 509
Score = 33.8 bits (77), Expect = 0.028
Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 158 QECLEAGRIFIQQSKDTESSGLVSVLLEVDKVPTDELSLSNFAAANKDDFVEDTKHIEVT 217
Q +E G + ++S + + L++D + +EL N +++ K +
Sbjct: 87 QLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEEL-KENGIILKGKKEIDNGKKYYLL 145
Query: 218 TGPGRHYIFTLA 229
+ Y F ++
Sbjct: 146 ESNNQVYEFRIS 157
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 28.1 bits (62), Expect = 1.8
Identities = 5/69 (7%), Positives = 9/69 (13%), Gaps = 16/69 (23%)
Query: 288 IIIFDEIDAICKAR--GTAGGNTGVHDTVVNQLLSKMDGVERLNNILVIGMTNRRDMIDE 345
+ +D + H + I N
Sbjct: 223 GQGINNLDNLRDYLDGSVKVNLEKKHLN-KRTQIFPP----------GIVTMNE---YSV 268
Query: 346 ALLRPGRLE 354
R
Sbjct: 269 PKTLQARFV 277
>d1ihma_ b.121.4.3 (A:) Calicivirus capsid protein {Norwalk virus
[TaxId: 11983]}
Length = 492
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 216 VTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELS 252
V T P + F P V++ F+L + LS
Sbjct: 178 VMTCPSPDFNFLFLVPPTVEQKTRPFTLPNLPLSSLS 214
>d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 26.3 bits (58), Expect = 4.2
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 242 SLLQRKWAELSLHQDIDVKPFFFN---PKNTSEF 272
+L + + K F FN N EF
Sbjct: 76 TLQLESVDPKNYPKKKMEKRFVFNKIEINNKLEF 109
>d1t7sa_ a.7.7.1 (A:) BAG-family molecular chaperon regulator-1,
BAG1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 129
Score = 25.6 bits (56), Expect = 4.9
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 41 PNEDGRVQILQIHTAKMRSYKKLADDVNLKELAALTKNFSGAELEGLVRAAQSCAMNRLI 100
+D ++L + S + A D+NL+++A L + F + + + +
Sbjct: 12 LVDDAGFKMLMQYEKHNLSNLQKAYDLNLRDVADLERGFLEKPK----QVEMGKKLEKKV 67
Query: 101 KATNKVEVDPQALEKL 116
K N E + LE L
Sbjct: 68 KYFN--EEAERHLETL 81
>g2nqo.1 d.153.1.6 (A:29-375,B:380-565)
Gamma-glutamyltranspeptidase, GGT {Helicobacter pylori
[TaxId: 210]}
Length = 533
Score = 26.4 bits (57), Expect = 5.9
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 149 GILNWGTPVQECLEAGRIFIQQSKDT 174
++++ + E + A R +Q D
Sbjct: 454 NVIDYNMNISEAVSAPRFHMQWLPDE 479
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 25.5 bits (55), Expect = 9.6
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 4/84 (4%)
Query: 209 EDTKHIEVTTGPGRHYIFTLAYSPDVKRGFIGFSLLQRKWAELSLHQDIDVKPFFFNPKN 268
++ ++ T G G H L + P + + + + +
Sbjct: 23 DEKIILDCTVGEGGHSRAILEHCPGCR----IIGIDVDSEVLRIAEEKLKEFSDRVSLFK 78
Query: 269 TSEFLCTIILEAGPNSGLHIIIFD 292
S +L+ + I+ D
Sbjct: 79 VSYREADFLLKTLGIEKVDGILMD 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.389
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,316,177
Number of extensions: 61444
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 34
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)