RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy363
         (59 letters)



>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
          Length = 815

 Score = 29.0 bits (65), Expect = 0.099
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 16  GFIKEWTLMIHGTRDPPYSSLPVSDP----HSKLAIVKKAHQD 54
           GFI EW+     T++PP    P+  P    +S +  + K HQD
Sbjct: 132 GFISEWSSCTFSTKNPPRKEEPLKIPDSVKNSFITKLLKKHQD 174


>gnl|CDD|191934 pfam08063, PADR1, PADR1 (NUC008) domain.  This domain is found in
          poly(ADP-ribose)-synthetases. The function of this
          domain is unknown.
          Length = 55

 Score = 27.3 bits (61), Expect = 0.16
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 2  SALQISFNSQEPN-HGFIKEWTLMIHGTRDPP 32
          S  Q+ FN       G+I EWT   + T+DP 
Sbjct: 21 SGGQLVFNGSAYVCTGYISEWTKCTYSTKDPK 52


>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related;
          Provisional.
          Length = 278

 Score = 26.0 bits (57), Expect = 1.2
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 10 SQEPNHGFIKEWTLMIHGTRDPPYSSLPVSDPHSKLAIVKK 50
          S+ P H F+ +  L  H +  PP++S+ ++DP     +  K
Sbjct: 43 SRNPPHPFL-QNALNFHNSSSPPWASISLADPSPPSVVESK 82


>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme.  Proteins
          destined for proteasome-mediated degradation may be
          ubiquitinated. Ubiquitination follows conjugation of
          ubiquitin to a conserved cysteine residue of UBC
          homologues. TSG101 is one of several UBC homologues
          that lacks this active site cysteine.
          Length = 139

 Score = 23.3 bits (51), Expect = 9.6
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 18 IKEWTLMIHGTRDPPY 33
          + EW + I G    PY
Sbjct: 26 LFEWEVTIIGPEGTPY 41


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,890,982
Number of extensions: 185657
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 4
Length of query: 59
Length of database: 10,937,602
Length adjustment: 31
Effective length of query: 28
Effective length of database: 9,562,628
Effective search space: 267753584
Effective search space used: 267753584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)