RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy363
(59 letters)
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 36.2 bits (83), Expect = 1e-04
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 4 LQISFNSQEPNHGFIKEWTLMIHGTRDPP 32
L+I S+ N+G + ++TL+++GT
Sbjct: 442 LEIENTSEANNYGTLTKFTLVLYGTAPEG 470
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 32.8 bits (74), Expect = 0.003
Identities = 3/44 (6%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 4 LQISFNSQEPNHGFIKEWTLMIHGTRDPPY--SSLPVSDPHSKL 45
+++ ++ + W L + G + + ++
Sbjct: 457 IKVK-TTENGHRIDFHSWRLKLFGESIDSSKTETFVFGNDKEEV 499
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 27.5 bits (61), Expect = 0.20
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
TL+I DP P P ++LA +
Sbjct: 240 TLVIQAEHDP---IAPAPHGKHLAGLIPTARLAEIPGM 274
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 27.2 bits (61), Expect = 0.23
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 11/39 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKAH 52
TL+I G D S ++L + H
Sbjct: 211 TLVIAGAYDTV---TAASHGELIAASIAGARLVTLPAVH 246
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 27.0 bits (60), Expect = 0.27
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 22 TLMIHGTRDP--PYSSLPVSD--PHSKLAIVKKA 51
L+I G D P + P D P + +
Sbjct: 266 VLVIAGEHDEATPKTWQPFVDHIPDVRSHVFPGT 299
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 26.9 bits (60), Expect = 0.29
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 22 TLMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
L+I D PPY V+D P+ + + A
Sbjct: 234 VLVIGFADDVVTPPYLGREVADALPNGRYLQIPDA 268
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 26.5 bits (59), Expect = 0.39
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 22 TLMIHGTRDPPYSSLPVSD------PHSKLAIVKKA 51
L++ G + Y P + ++K A
Sbjct: 249 ILLLLGEHEVIYDPHSALHRASSFVPDIEAEVIKNA 284
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 26.5 bits (59), Expect = 0.42
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
L++HG +DP +P S+L ++ +
Sbjct: 199 ALIVHGEKDP---LVPRFHADFIHKHVKGSRLHLMPEG 233
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 26.4 bits (59), Expect = 0.43
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
L ++G D P PHS+ I KA
Sbjct: 199 FLRLYGYLDGLV---PRKVVPMLDKLWPHSESYIFAKA 233
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 26.2 bits (58), Expect = 0.50
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 22 TLMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
+ + G D P S +++ P++ L +++
Sbjct: 224 SFIYCGKHDVQCPYIFSCEIANLIPNATLTKFEES 258
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 26.1 bits (58), Expect = 0.50
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA-H 52
L+ HGT D +P +D ++ L + H
Sbjct: 218 VLVAHGTDDQ---VVPYADAAPKSAELLANATLKSYEGLPH 255
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 26.0 bits (58), Expect = 0.59
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
+L++ D P + P+S L ++
Sbjct: 213 SLILQCADDI---IAPATVGKYMHQHLPYSSLKQMEAR 247
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 25.8 bits (57), Expect = 0.63
Identities = 2/38 (5%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
++ G D + + + ++ ++ +
Sbjct: 211 FKIMVGRNDQ---VVGYQEQLKLINHNENGEIVLLNRT 245
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 26.1 bits (58), Expect = 0.68
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 22 TLMIHGTRD---PPYSSLPVSD--PHSKLAIVKKAH 52
L+I GT D P ++ ++ + +H
Sbjct: 209 ALVISGTHDLAATPAQGRELAQAIAGARYVELDASH 244
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 25.7 bits (57), Expect = 0.86
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
L++HG D +P + P+ L K
Sbjct: 219 VLVMHGDDDQ---IVPYENSGVLSAKLLPNGALKTYKGY 254
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 25.5 bits (56), Expect = 0.89
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
L++HGT D +LP+ + P ++ V+ A
Sbjct: 221 ALILHGTGDR---TLPIENTARVFHKALPSAEYVEVEGA 256
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 25.4 bits (56), Expect = 1.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 23 LMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
L++HG +D P +S+ S + KL +
Sbjct: 193 LIVHGDQDEAVPYEASVAFSKQYKNCKLVTIPGD 226
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 24.9 bits (55), Expect = 1.3
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
L++HGT D +LP+ + P ++ V+ A
Sbjct: 220 ALILHGTGDR---TLPIENTARVFHKALPSAEYVEVEGA 255
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 25.3 bits (54), Expect = 1.3
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 16 GFIKEWTLMIHGT 28
G + W+L + G
Sbjct: 583 GKLISWSLRVLGH 595
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 24.9 bits (55), Expect = 1.6
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
TL+IHG D P ++L + K A
Sbjct: 214 TLVIHGDGDQIV---PFETTGKVAAELIKGAELKVYKDA 249
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 24.9 bits (55), Expect = 1.7
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
L+ +D P+S+L +++
Sbjct: 221 ALIFQSAKDS---LASPEVGQYMAENIPNSQLELIQAE 255
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 24.7 bits (54), Expect = 1.7
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 22 TLMIHGTRD---PPYSSLPVSD---PHSKLAIVKKA-H 52
TL++HGT+D P ++ P + V+ A H
Sbjct: 222 TLILHGTKDNILPIDATARRFHQAVPEADYVEVEGAPH 259
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 24.8 bits (54), Expect = 1.9
Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 22 TLMIHGTRDPPYSSLPVSDPHSKLAIVKKAHQDRL 56
TL++ G +D + D + + +L
Sbjct: 241 TLLLIGEKDN---TAIGKDAAPAELKARLGNYAQL 272
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 24.6 bits (54), Expect = 2.1
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
TL++HG D +P+ S L I A
Sbjct: 216 TLVVHGDADQ---VVPIEASGIASAALVKGSTLKIYSGA 251
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 24.7 bits (54), Expect = 2.1
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 22 TLMIHGTRDPPYSSLPVSD---------PHSKLAIVKKA 51
TL+IHG D ++P P+SK+A++K
Sbjct: 224 TLIIHGDSDA---TVPFEYSGKLTHEAIPNSKVALIKGG 259
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 24.6 bits (54), Expect = 2.2
Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
L+ HG +D +P+ H++L ++ +
Sbjct: 228 VLVFHGRQDR---IVPLDTSLYLTKHLKHAELVVLDRC 262
>2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB:
3cxu_A*
Length = 328
Score = 24.3 bits (53), Expect = 2.3
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 22 TLMIHGTRDP 31
T I G D
Sbjct: 264 TKFIVGEFDL 273
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 24.2 bits (53), Expect = 2.7
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
TL+IHG D +P+S ++L + +
Sbjct: 216 TLIIHGREDQ---VVPLSSSLRLGELIDRAQLHVFGRC 250
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 24.2 bits (53), Expect = 2.9
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 22 TLMIHGTRD---PPYSSLPVSD---PHSKLAIVKKA 51
TL++HG D P ++ S P+++L + + +
Sbjct: 215 TLVVHGDDDQVVPIDATGRKSAQIIPNAELKVYEGS 250
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 24.1 bits (52), Expect = 3.7
Identities = 3/10 (30%), Positives = 5/10 (50%)
Query: 22 TLMIHGTRDP 31
LM+ +D
Sbjct: 488 ALMVTAEKDF 497
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 23.8 bits (52), Expect = 3.8
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
T + G D +P+ ++L + K
Sbjct: 229 TFITWGRDDR---FVPLDHGLKLLWNIDDARLHVFSKC 263
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 23.5 bits (51), Expect = 4.7
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 22 TLMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
TL++ G D P + L + S+L I +
Sbjct: 232 TLIVWGRNDRFVPMDAGLRLLSGIAGSELHIFRDC 266
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 23.5 bits (51), Expect = 4.9
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 11/38 (28%)
Query: 22 TLMIHGTRDPPYSSLPVSD--------PHSKLAIVKKA 51
TL++ G D +PV S I+
Sbjct: 225 TLVVQGKDDK---VVPVETAYKFLDLIDDSWGYIIPHC 259
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 23.4 bits (49), Expect = 5.3
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 4/20 (20%)
Query: 34 SSLPVSDPHS--KLAIVKKA 51
+SL + S LAI KA
Sbjct: 27 ASLKLYADDSAPALAI--KA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 23.3 bits (49), Expect = 6.7
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 17/61 (27%)
Query: 12 EPNHGFIKE-----------WTLMIHGTRD------PPYSSLPVSDPHSKLAIVKKAHQD 54
N+ F+ T M RD ++ VS L + + +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 55 R 55
R
Sbjct: 148 R 148
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 22.8 bits (49), Expect = 8.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 23 LMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
+IHGT D P +S +S L +++ A
Sbjct: 211 CLIHGTDDTVVSPNASKKYDQIYQNSTLHLIEGA 244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.392
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 859,460
Number of extensions: 32838
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 37
Length of query: 59
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 29
Effective length of database: 5,864,163
Effective search space: 170060727
Effective search space used: 170060727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)