RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy363
         (59 letters)



>d1p8ja1 b.18.1.20 (A:443-578) Furin, C-terminal domain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 136

 Score = 33.8 bits (77), Expect = 3e-04
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 4   LQISFNSQEPNHGFIKEWTLMIHGT 28
           L+I   S+  N+G + ++TL+++GT
Sbjct: 107 LEIENTSEANNYGTLTKFTLVLYGT 131


>d2id4a1 b.18.1.20 (A:461-601) Kexin, C-terminal domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 24.6 bits (53), Expect = 0.67
 Identities = 3/21 (14%), Positives = 7/21 (33%)

Query: 8   FNSQEPNHGFIKEWTLMIHGT 28
             ++  +      W L + G 
Sbjct: 113 KTTENGHRIDFHSWRLKLFGE 133


>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae
           [TaxId: 666]}
          Length = 264

 Score = 24.1 bits (50), Expect = 1.3
 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 13  PNHGFIKEWTLMIHGTRDPPYSSLPVSDPHSKLAIVKKA 51
           P    +K     + G +D  +  L         + V +A
Sbjct: 202 PALQALKLPIHYVCGEQDSKFQQL-AESSGLSYSQVAQA 239


>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
           {Streptomyces purpurascens [TaxId: 1924]}
          Length = 297

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 5   QISFNSQEPNHGFIKEWTLMIHGTRD---PPYSSLPVSD--PHSKLAIVKKA 51
            +   S+      +   TL+I    D   P      ++   P ++LA +   
Sbjct: 222 TLPPPSRAAELREVTVPTLVIQAEHDPIAPAPHGKHLAGLIPTARLAEIPGM 273


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0542    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 214,343
Number of extensions: 6666
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 6
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)