Query psy3630
Match_columns 172
No_of_seqs 126 out of 1393
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 21:38:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 3.8E-53 8.3E-58 343.2 14.6 170 2-171 80-319 (321)
2 KOG0819|consensus 100.0 7.8E-41 1.7E-45 271.4 14.2 142 12-170 18-159 (321)
3 PF00191 Annexin: Annexin; In 99.8 1.8E-19 3.9E-24 116.6 8.5 66 14-79 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.8 1.9E-19 4.1E-24 116.5 7.5 66 103-168 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 3.4E-15 7.3E-20 92.5 6.3 53 27-79 1-53 (53)
6 smart00335 ANX Annexin repeats 99.6 3.6E-15 7.8E-20 92.4 5.5 53 116-168 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 59.6 11 0.00024 24.1 2.6 43 125-167 16-59 (65)
8 PF14003 YlbE: YlbE-like prote 57.1 17 0.00037 23.3 3.1 30 37-66 17-46 (65)
9 cd01047 ACSF Aerobic Cyclase S 55.3 41 0.00089 28.1 5.8 31 28-58 10-40 (323)
10 TIGR02029 AcsF magnesium-proto 48.3 53 0.0011 27.7 5.5 31 28-58 20-50 (337)
11 KOG2027|consensus 47.8 82 0.0018 27.3 6.8 26 132-157 98-123 (388)
12 PF13043 DUF3903: Domain of un 39.9 30 0.00064 19.5 2.0 18 133-150 9-26 (40)
13 KOG0859|consensus 37.1 48 0.0011 26.0 3.5 34 132-165 78-111 (217)
14 KOG2535|consensus 36.7 2E+02 0.0043 24.9 7.3 129 31-165 31-212 (554)
15 PF13720 Acetyltransf_11: Udp 36.7 29 0.00062 23.1 1.9 21 39-59 27-47 (83)
16 CHL00185 ycf59 magnesium-proto 33.6 2.4E+02 0.0052 24.0 7.2 31 28-58 26-56 (351)
17 KOG0031|consensus 33.1 2.2E+02 0.0047 21.6 7.6 101 36-142 22-144 (171)
18 PF00249 Myb_DNA-binding: Myb- 30.6 1.1E+02 0.0024 17.5 3.7 31 104-134 8-40 (48)
19 PF12098 DUF3574: Protein of u 30.3 44 0.00095 23.4 2.1 19 41-59 73-91 (104)
20 PRK13654 magnesium-protoporphy 29.5 2.9E+02 0.0062 23.6 7.0 31 28-58 30-60 (355)
21 PF06854 Phage_Gp15: Bacteriop 29.1 97 0.0021 23.8 4.0 35 130-165 107-142 (183)
22 cd00171 Sec7 Sec7 domain; Doma 27.9 2.7E+02 0.0059 21.1 6.6 51 12-66 34-87 (185)
23 cd06155 eu_AANH_C_1 A group of 27.7 71 0.0015 21.6 2.8 42 106-147 33-75 (101)
24 KOG2284|consensus 27.4 1.2E+02 0.0025 27.0 4.5 93 69-166 363-475 (728)
25 PF13062 DUF3924: Protein of u 27.4 61 0.0013 19.8 2.0 21 132-152 14-34 (62)
26 PRK10219 DNA-binding transcrip 27.0 1.1E+02 0.0024 20.5 3.7 20 47-66 37-56 (107)
27 cd00171 Sec7 Sec7 domain; Doma 27.0 2E+02 0.0044 21.8 5.5 54 99-156 32-88 (185)
28 COG1955 FlaJ Archaeal flagella 26.5 4.9E+02 0.011 23.6 10.4 35 132-168 144-178 (527)
29 PF00888 Cullin: Cullin family 26.4 4.6E+02 0.0099 23.2 10.7 129 37-169 246-403 (588)
30 PRK06041 flagellar assembly pr 25.8 5E+02 0.011 23.5 10.9 43 22-66 85-133 (553)
31 PRK10296 DNA-binding transcrip 23.8 1.7E+02 0.0037 23.2 4.8 44 108-151 226-269 (278)
32 cd06150 YjgF_YER057c_UK114_lik 23.6 92 0.002 21.1 2.8 41 107-147 37-78 (105)
33 COG5118 BDP1 Transcription ini 23.5 89 0.0019 27.1 3.1 41 103-146 371-411 (507)
34 cd02198 YjgH_like YjgH belongs 23.5 88 0.0019 21.5 2.7 42 106-147 40-83 (111)
35 PRK06041 flagellar assembly pr 23.3 3E+02 0.0065 24.9 6.6 62 106-169 80-151 (553)
36 COG1043 LpxA Acyl-[acyl carrie 22.6 1.1E+02 0.0025 24.8 3.4 26 40-65 205-232 (260)
37 PF10788 DUF2603: Protein of u 21.6 1.2E+02 0.0027 22.2 3.2 34 133-166 64-97 (137)
38 PRK12461 UDP-N-acetylglucosami 21.4 1.2E+02 0.0027 24.4 3.5 27 39-65 199-227 (255)
39 TIGR03610 RutC pyrimidine util 21.0 1.1E+02 0.0023 21.8 2.7 42 106-147 57-99 (127)
40 PRK13503 transcriptional activ 20.9 2.1E+02 0.0045 22.5 4.7 21 132-152 249-269 (278)
41 PRK10130 transcriptional regul 20.5 3.5E+02 0.0077 22.8 6.2 37 120-156 309-345 (350)
42 KOG2875|consensus 20.2 2.6E+02 0.0056 23.4 5.0 108 41-169 172-285 (323)
43 PF08397 IMD: IRSp53/MIM homol 20.2 4.2E+02 0.0091 20.5 7.2 71 86-156 22-96 (219)
44 cd06153 YjgF_YER057c_UK114_lik 20.1 1.2E+02 0.0027 21.1 2.9 42 106-147 43-90 (114)
45 cd06154 YjgF_YER057c_UK114_lik 20.0 1.2E+02 0.0026 21.1 2.8 42 106-147 51-93 (119)
No 1
>KOG0819|consensus
Probab=100.00 E-value=3.8e-53 Score=343.19 Aligned_cols=170 Identities=42% Similarity=0.719 Sum_probs=168.2
Q ss_pred HhhhhhccCchHHHHHHHHHHHhCCCCCHHHHHHHHhhCCHHHHHHHHHHHHHhhcccHHHHHhhCcchhHHHHHHHh--
Q psy3630 2 RKHLRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVAL-- 79 (172)
Q Consensus 2 ~~~~~~~~~~~~~da~~l~~a~~g~g~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~ll~~l-- 79 (172)
+.+++|+.||+++||.+|++||+|.|||+++||||+|+|||.|+++|+++|+..|+++|+++|.++|||+|+++|+.|
T Consensus 80 ~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 80 RAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred HHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------hhcCCchHHHHH
Q psy3630 80 --------------------------------------------------------------------SETSGSLEDGYL 91 (172)
Q Consensus 80 --------------------------------------------------------------------~e~sg~~~~al~ 91 (172)
.|++|+++++|+
T Consensus 160 ~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~ll 239 (321)
T KOG0819|consen 160 GNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLL 239 (321)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHH
Confidence 999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHhccc
Q psy3630 92 SIVRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSIQRE 171 (172)
Q Consensus 92 ~~~~~~~~~~~~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l~~~ 171 (172)
++++|++|||.|||+.||+||+|.|||+.+||||+++|++.||..|++.|+++||+||.++|+++|||||+++|++||+.
T Consensus 240 aiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~dtsGdY~~~LlaL~g~ 319 (321)
T KOG0819|consen 240 AIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGDTSGDYKKALLALLGG 319 (321)
T ss_pred HHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhhccchHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0819|consensus
Probab=100.00 E-value=7.8e-41 Score=271.44 Aligned_cols=142 Identities=34% Similarity=0.589 Sum_probs=137.8
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHhhCCHHHHHHHHHHHHHhhcccHHHHHhhCcchhHHHHHHHhhhcCCchHHHHH
Q psy3630 12 SAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVALSETSGSLEDGYL 91 (172)
Q Consensus 12 ~~~da~~l~~a~~g~g~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~ll~~l~e~sg~~~~al~ 91 (172)
|..||+.|++||+|+|||+..+|+||++|++.|++.|+++|+..||++|.+++++++||+|++++++|
T Consensus 18 p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al------------ 85 (321)
T KOG0819|consen 18 PVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVAL------------ 85 (321)
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHH------------
Confidence 45799999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHhhhhHHHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHhcc
Q psy3630 92 SIVRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSIQR 170 (172)
Q Consensus 92 ~~~~~~~~~~~~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l~~ 170 (172)
...|+.+||..|++||+|+|||++.||+|+|+|++.|+.+|+++|+..|++||+++|.++|||+|+++|+.|+.
T Consensus 86 -----~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 86 -----MKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred -----cCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.81 E-value=1.8e-19 Score=116.63 Aligned_cols=66 Identities=50% Similarity=0.745 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhhCCHHHHHHHHHHHHHhhcccHHHHHhhCcchhHHHHHHHh
Q psy3630 14 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVAL 79 (172)
Q Consensus 14 ~da~~l~~a~~g~g~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~ll~~l 79 (172)
+||+.|++|++|+|+|+..+++|+++||+.|++.|+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999875
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.80 E-value=1.9e-19 Score=116.52 Aligned_cols=66 Identities=38% Similarity=0.549 Sum_probs=63.5
Q ss_pred HHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHh
Q psy3630 103 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSI 168 (172)
Q Consensus 103 ~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l 168 (172)
+||+.|++|++|+|+|+..+++|+++|++.++..|+++|++.||++|+++|++++||||+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999986
No 5
>smart00335 ANX Annexin repeats.
Probab=99.59 E-value=3.4e-15 Score=92.52 Aligned_cols=53 Identities=51% Similarity=0.831 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHhhCCHHHHHHHHHHHHHhhcccHHHHHhhCcchhHHHHHHHh
Q psy3630 27 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVAL 79 (172)
Q Consensus 27 g~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~ll~~l 79 (172)
|||+..|++|+++|++.|++.|+++|++.||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.58 E-value=3.6e-15 Score=92.39 Aligned_cols=53 Identities=36% Similarity=0.591 Sum_probs=51.6
Q ss_pred CcChhhhhhhhccCCHHHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHh
Q psy3630 116 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSI 168 (172)
Q Consensus 116 gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l 168 (172)
|||+..|++|+++|++.|+..|+++|++.||++|.++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999999875
No 7
>PF14003 YlbE: YlbE-like protein
Probab=59.63 E-value=11 Score=24.09 Aligned_cols=43 Identities=14% Similarity=0.297 Sum_probs=33.2
Q ss_pred hhccCCHHHHHHHHHHHHHhhchhHHHHHhhcChH-HHHHHHHH
Q psy3630 125 IIVTRSEIDLGDIKQDYLKMYETTLEERIKVRNEE-ERRRWVWS 167 (172)
Q Consensus 125 il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG-~~~~~ll~ 167 (172)
..++|.|.++.....++...|++++-+.|..-..| ..-.+++.
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~ 59 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMME 59 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHH
Confidence 34579999999999999999999999999865443 24444443
No 8
>PF14003 YlbE: YlbE-like protein
Probab=57.09 E-value=17 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=27.5
Q ss_pred HhhCCHHHHHHHHHHHHHhhcccHHHHHhh
Q psy3630 37 IVTRSEIDLGDIKQDYLKMYETTLEERIKD 66 (172)
Q Consensus 37 l~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~ 66 (172)
..+|.|.++..+-.++...|++.+-+.|.+
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek 46 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEK 46 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 348999999999999999999999999986
No 9
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=55.28 E-value=41 Score=28.14 Aligned_cols=31 Identities=6% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q psy3630 28 TNDRTLIRIIVTRSEIDLGDIKQDYLKMYET 58 (172)
Q Consensus 28 ~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~ 58 (172)
||-+.+-++=++...+|+.++.+.++.-|++
T Consensus 10 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 40 (323)
T cd01047 10 TDFDEMAALDISKNREEFEAMLAEFKADYNR 40 (323)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 5556666665666778888888888877654
No 10
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=48.32 E-value=53 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=24.4
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q psy3630 28 TNDRTLIRIIVTRSEIDLGDIKQDYLKMYET 58 (172)
Q Consensus 28 ~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~ 58 (172)
||-+.+-.+=++...+|+.+|.+.++.-|++
T Consensus 20 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 50 (337)
T TIGR02029 20 TDFEEMANLDVSPVENEWDAMLAEMKADYNR 50 (337)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 6777777776777888999999999887754
No 11
>KOG2027|consensus
Probab=47.84 E-value=82 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcC
Q psy3630 132 IDLGDIKQDYLKMYETTLEERIKVRN 157 (172)
Q Consensus 132 ~~~~~Ik~~y~~~yg~~L~~~i~~~~ 157 (172)
.|+..|+.-|.++||+++........
T Consensus 98 pEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 98 PELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 78999999999999999999888775
No 12
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=39.86 E-value=30 Score=19.51 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhchhHH
Q psy3630 133 DLGDIKQDYLKMYETTLE 150 (172)
Q Consensus 133 ~~~~Ik~~y~~~yg~~L~ 150 (172)
-++.++..-+++||++|-
T Consensus 9 ai~kvr~eckrrfgktll 26 (40)
T PF13043_consen 9 AIQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHHhchhhh
Confidence 367889999999999974
No 13
>KOG0859|consensus
Probab=37.14 E-value=48 Score=26.04 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHH
Q psy3630 132 IDLGDIKQDYLKMYETTLEERIKVRNEEERRRWV 165 (172)
Q Consensus 132 ~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~l 165 (172)
.=+.+|++.|.+.||.....++.-...-.|-+.|
T Consensus 78 aFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL 111 (217)
T KOG0859|consen 78 AFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVL 111 (217)
T ss_pred HHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHH
Confidence 4588999999999999988887766666666554
No 14
>KOG2535|consensus
Probab=36.73 E-value=2e+02 Score=24.90 Aligned_cols=129 Identities=19% Similarity=0.284 Sum_probs=78.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccc----HHHHHhhCcchhHHHHHH-Hh-------------------------h
Q psy3630 31 RTLIRIIVTRSEIDLGDIKQDYLKMYETT----LEERIKDDTSGDYKRLLV-AL-------------------------S 80 (172)
Q Consensus 31 ~~Li~il~~rs~~~l~~i~~~Y~~~yg~~----L~~~i~~~~sg~~~~ll~-~l-------------------------~ 80 (172)
..|++..-.....++..++..+.++||-+ |. +|....-.++++.|+ .| -
T Consensus 31 ~elie~~~~~k~i~ln~~k~~~~~Ky~L~~~Prlv-diIa~vP~~~k~~LlpkLrAKPvRTASGiAVVAVMcKPHRCPHI 109 (554)
T KOG2535|consen 31 KELIEAHEQNKDIDLNALKTKVARKYGLSAQPRLV-DIIAAVPPQYKKSLLPKLRAKPVRTASGIAVVAVMCKPHRCPHI 109 (554)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHhCCccCchHH-HHHhhCChHHHHhhhHHhccCccccccceEEEEEecCCCCCCce
Confidence 34556555666788899999999999865 44 344445556655543 34 1
Q ss_pred hcCCc------------h-----------HHHHHHHHHHHhhhhHHHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHH
Q psy3630 81 ETSGS------------L-----------EDGYLSIVRCVRDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDI 137 (172)
Q Consensus 81 e~sg~------------~-----------~~al~~~~~~~~~~~~~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~I 137 (172)
.+.|+ | --+++++ +.-.||...--..+. -++.+|..-+-+--|+.+-+ +..+
T Consensus 110 a~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAI-RaRYdP~~QaR~Rv~-QLk~LGHsvDKVE~i~MGGT---FMsL 184 (554)
T KOG2535|consen 110 AFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAI-RARYDPYLQARGRVE-QLKQLGHSVDKVEFIVMGGT---FMSL 184 (554)
T ss_pred eccCCEEEECCCCCCccceeecccccCcCcchHHHH-HHhcCHHHHHHHHHH-HHHHhCCccceeEEEEecce---eecC
Confidence 12221 1 1223332 333355543333333 35666766665555555444 5566
Q ss_pred HHHHHHhhchhHHHHHhhcChHHHHHHH
Q psy3630 138 KQDYLKMYETTLEERIKVRNEEERRRWV 165 (172)
Q Consensus 138 k~~y~~~yg~~L~~~i~~~~sG~~~~~l 165 (172)
-+.|...|-..|.+++...+|-+-+.++
T Consensus 185 Pe~YRd~FI~nLHdALSGhts~~v~EAv 212 (554)
T KOG2535|consen 185 PEEYRDYFIRNLHDALSGHTSANVEEAV 212 (554)
T ss_pred hHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 7889999999999999999998877665
No 15
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=36.69 E-value=29 Score=23.05 Aligned_cols=21 Identities=10% Similarity=0.333 Sum_probs=17.1
Q ss_pred hCCHHHHHHHHHHHHHhhccc
Q psy3630 39 TRSEIDLGDIKQDYLKMYETT 59 (172)
Q Consensus 39 ~rs~~~l~~i~~~Y~~~yg~~ 59 (172)
.-+++++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 458899999999999999654
No 16
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=33.58 E-value=2.4e+02 Score=23.99 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q psy3630 28 TNDRTLIRIIVTRSEIDLGDIKQDYLKMYET 58 (172)
Q Consensus 28 ~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~ 58 (172)
||-+.+-.+=.+...+|+.+|.+.++.-|++
T Consensus 26 TDF~~m~~~dis~~~~e~~A~l~E~r~DyNr 56 (351)
T CHL00185 26 TDFDEMANYDISSNIEEIEAILEEFRADYNQ 56 (351)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 6777777777788889999999999887754
No 17
>KOG0031|consensus
Probab=33.12 E-value=2.2e+02 Score=21.65 Aligned_cols=101 Identities=14% Similarity=0.237 Sum_probs=50.4
Q ss_pred HHhhCCHHHHHHHHHHHHHhh--------cccHHHHHhh---CcchhHHHHHHHhhhcCCchHHHHHHHHHHHh----hh
Q psy3630 36 IIVTRSEIDLGDIKQDYLKMY--------ETTLEERIKD---DTSGDYKRLLVALSETSGSLEDGYLSIVRCVR----DK 100 (172)
Q Consensus 36 il~~rs~~~l~~i~~~Y~~~y--------g~~L~~~i~~---~~sg~~~~ll~~l~e~sg~~~~al~~~~~~~~----~~ 100 (172)
++.--+..|+++++++|.-+= ..+|.+-+.+ ..+.++-..++ .|.+|.+.-.+...+-+-+ +|
T Consensus 22 vFamf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~--~Ea~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMM--KEAPGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHH--HhCCCCeeHHHHHHHHHHHhcCCCH
Confidence 344457899999999996331 1122222211 22222322222 6777776433222222211 34
Q ss_pred hHHHHHHHHhHhc-----cCC-cChhhhhhhhccCCH-HHHHHHHHHHH
Q psy3630 101 SAYLAQRLENAMA-----GMG-TNDRTLIRIIVTRSE-IDLGDIKQDYL 142 (172)
Q Consensus 101 ~~~~a~~l~~A~~-----g~g-td~~~Li~il~~r~~-~~~~~Ik~~y~ 142 (172)
. +.|..|++ |.| .+++.|.++|.+.-+ -.-..|.+.|.
T Consensus 100 e----~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r 144 (171)
T KOG0031|consen 100 E----EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYR 144 (171)
T ss_pred H----HHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 2 33566654 334 678888888886532 12334555554
No 18
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=30.56 E-value=1.1e+02 Score=17.47 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHhHhccCCcC-hhhhhhhhc-cCCHHHH
Q psy3630 104 LAQRLENAMAGMGTN-DRTLIRIIV-TRSEIDL 134 (172)
Q Consensus 104 ~a~~l~~A~~g~gtd-~~~Li~il~-~r~~~~~ 134 (172)
+-..|.++++..|++ -..+-+.+. +|+..++
T Consensus 8 E~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc 40 (48)
T PF00249_consen 8 EDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQC 40 (48)
T ss_dssp HHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHH
Confidence 346678888888888 777778887 8886554
No 19
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=30.34 E-value=44 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHhhccc
Q psy3630 41 SEIDLGDIKQDYLKMYETT 59 (172)
Q Consensus 41 s~~~l~~i~~~Y~~~yg~~ 59 (172)
+...+.+|+++|++.|++.
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3577899999999999875
No 20
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=29.48 E-value=2.9e+02 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=25.7
Q ss_pred CCHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q psy3630 28 TNDRTLIRIIVTRSEIDLGDIKQDYLKMYET 58 (172)
Q Consensus 28 ~de~~Li~il~~rs~~~l~~i~~~Y~~~yg~ 58 (172)
||-+.+-.+=.+...+|+.+|.+.++.-|++
T Consensus 30 TDF~~m~~~d~s~~~~e~~A~l~E~r~DyNr 60 (355)
T PRK13654 30 TDFDAMAKLDLSPNREELDAILEEMRADYNR 60 (355)
T ss_pred ccHHHHHhcCCchhHHHHHHHHHHHHhCccc
Confidence 6778888887788889999999999887754
No 21
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=29.07 E-value=97 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.034 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHhhchhHHHHHhhcChHH-HHHHH
Q psy3630 130 SEIDLGDIKQDYLKMYETTLEERIKVRNEEE-RRRWV 165 (172)
Q Consensus 130 ~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~-~~~~l 165 (172)
.+.|...|-++|.+-||.+|.+.+ ...+-. |..++
T Consensus 107 ~~~Da~~IyasF~~~YgIdL~~~~-~~lhW~~F~aL~ 142 (183)
T PF06854_consen 107 FEQDADYIYASFLQQYGIDLIEEQ-GYLHWWKFKALF 142 (183)
T ss_pred HHHhHHHHHHHHHHHhCccHHHhc-ccCcHHHHHHHH
Confidence 457899999999999999996654 345543 44433
No 22
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=27.90 E-value=2.7e+02 Score=21.13 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHhhCCHHHHHHHHHHHHHhh---cccHHHHHhh
Q psy3630 12 SAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY---ETTLEERIKD 66 (172)
Q Consensus 12 ~~~da~~l~~a~~g~g~de~~Li~il~~rs~~~l~~i~~~Y~~~y---g~~L~~~i~~ 66 (172)
+..-|..|+.. .|.|...+.+.|+... +.-..+..+|-..| |.++.++++.
T Consensus 34 ~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~ 87 (185)
T cd00171 34 PKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRK 87 (185)
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 34455555554 5689999999999887 45578888898877 8889998886
No 23
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=27.65 E-value=71 Score=21.59 Aligned_cols=42 Identities=12% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHHHhHhccCCcChhhhhhhhcc-CCHHHHHHHHHHHHHhhch
Q psy3630 106 QRLENAMAGMGTNDRTLIRIIVT-RSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 106 ~~l~~A~~g~gtd~~~Li~il~~-r~~~~~~~Ik~~y~~~yg~ 147 (172)
+.|.+.++..|.+-+.++++.+- +...++..+.+.|.+.|+.
T Consensus 33 ~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~~ 75 (101)
T cd06155 33 SKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFDK 75 (101)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 34666677667777777655442 4567899999999999883
No 24
>KOG2284|consensus
Probab=27.42 E-value=1.2e+02 Score=26.96 Aligned_cols=93 Identities=19% Similarity=0.322 Sum_probs=55.4
Q ss_pred chhHHHHHHHh----hhcCCchHHHHHHHHHHHhhh-------hH----HHHHHHHhHhccCCcC--hhhhhhhh-ccCC
Q psy3630 69 SGDYKRLLVAL----SETSGSLEDGYLSIVRCVRDK-------SA----YLAQRLENAMAGMGTN--DRTLIRII-VTRS 130 (172)
Q Consensus 69 sg~~~~ll~~l----~e~sg~~~~al~~~~~~~~~~-------~~----~~a~~l~~A~~g~gtd--~~~Li~il-~~r~ 130 (172)
-|.|.++..++ .+|+..+.+||..+++. +.| ++ |---+|+++-+|+..+ |+.|...+ +.|.
T Consensus 363 ~~kf~~~~~~v~~~d~~f~s~ldkal~~vvn~-~epg~sv~ka~e~la~y~d~llkks~kg~se~~~e~~l~s~i~if~y 441 (728)
T KOG2284|consen 363 YNKFNDMKTAVFMDDGEFSSGLDKALQGVVNS-KEPGQSVPKASERLARYTDGLLKKSTKGLSETDLEAKLDSAIVIFRY 441 (728)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHhhcc-CCCCccccchHHHHHHHhhhHHhhhhcCCChhhHHHhhhcceeeeee
Confidence 46666666655 55555667777777764 334 22 3334567777776532 34555433 3454
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHhhcCh--HHHHHHHH
Q psy3630 131 EIDLGDIKQDYLKMYETTLEERIKVRNE--EERRRWVW 166 (172)
Q Consensus 131 ~~~~~~Ik~~y~~~yg~~L~~~i~~~~s--G~~~~~ll 166 (172)
-+| |..|++-|.+-|..++-.-+| -|-+.++.
T Consensus 442 i~d----kdifqkfys~mla~rli~~~s~smd~ee~mi 475 (728)
T KOG2284|consen 442 IED----KDIFQKFYSKMLANRLIASTSISMDAEELMI 475 (728)
T ss_pred ccc----HHHHHHHHHHHHHHHHHhhcccccchHHHHH
Confidence 333 566788888888888776544 55565554
No 25
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=27.38 E-value=61 Score=19.78 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhchhHHHH
Q psy3630 132 IDLGDIKQDYLKMYETTLEER 152 (172)
Q Consensus 132 ~~~~~Ik~~y~~~yg~~L~~~ 152 (172)
+.+.-++++|+++.|.++.+.
T Consensus 14 ekl~llkqayqkktgatises 34 (62)
T PF13062_consen 14 EKLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHHhhcCCccchh
Confidence 457789999999999988764
No 26
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=27.04 E-value=1.1e+02 Score=20.52 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHHhhcccHHHHHhh
Q psy3630 47 DIKQDYLKMYETTLEERIKD 66 (172)
Q Consensus 47 ~i~~~Y~~~yg~~L~~~i~~ 66 (172)
.+...|++.+|.++.+.|..
T Consensus 37 ~l~r~f~~~~g~s~~~~i~~ 56 (107)
T PRK10219 37 YLQRMFRTVTHQTLGDYIRQ 56 (107)
T ss_pred HHHHHHHHHHCcCHHHHHHH
Confidence 44455677788888777763
No 27
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=27.00 E-value=2e+02 Score=21.84 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhh---chhHHHHHhhc
Q psy3630 99 DKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMY---ETTLEERIKVR 156 (172)
Q Consensus 99 ~~~~~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~y---g~~L~~~i~~~ 156 (172)
+.+...|..|+.. .|.+...+-+.+.... +.-..|-.+|.+.| |.++.++++.-
T Consensus 32 ~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR~~ 88 (185)
T cd00171 32 DSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALRKF 88 (185)
T ss_pred CCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3455667777765 4689999999998664 55678889999887 78999988853
No 28
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.47 E-value=4.9e+02 Score=23.58 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHh
Q psy3630 132 IDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSI 168 (172)
Q Consensus 132 ~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l 168 (172)
.|+..+...|+..|-+.|++. +..++-|..+++.+
T Consensus 144 ~E~~~~~~~y~~~Yer~LeSl--~~~~diY~sll~S~ 178 (527)
T COG1955 144 REQDTTMDEYETEYERALESL--DVWKDIYVSLLVSL 178 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 578899999999999999886 55666677766553
No 29
>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3). Cullins are found throughout eukaryotes. Humans express seven cullins (Cul1, 2, 3, 4A, 4B, 5 and 7), each forming part of a multi-subunit ubiquitin complex. Cullin-RING ubiquitin ligases (CRLs), such as Cul1 (SCF) [], play an essential role in targeting proteins for ubiquitin-mediated destruction; as such, they are diverse in terms of composition and function, regulating many different processes from glucose sensing and DNA replication to limb patterning and circadian rhythms. The catalytic core of CRLs consists of a RING protein and a cullin family member. For Cul1, the C-terminal cullin-homology domain binds the RING protein. The RING protein appears to function as a docking site for ubiquitin-conjugating enzymes (E2s). Other proteins contain a cullin-homology domain, such as the APC2 subunit of the anaphase-promoting complex/cyclosome and the p53 cytoplasmic anchor PARC; both APC2 and PARC have ubiquitin ligase activity. The N-terminal region of cullins is more variable, and is used to interact with specific adaptor proteins [, , ]. This entry represents the N-terminal region of cullin proteins, which consists of several domains, including cullin repeat domain, a 4-helical bundle domain, an alpha+beta domain, and a winged helix-like domain.; GO: 0031625 ubiquitin protein ligase binding, 0006511 ubiquitin-dependent protein catabolic process, 0031461 cullin-RING ubiquitin ligase complex; PDB: 2WZK_A 3DQV_D 3DPL_C 3RTR_G 3TDU_D 1LDJ_A 3TDZ_D 1LDK_A 1U6G_A 4A0K_A ....
Probab=26.42 E-value=4.6e+02 Score=23.22 Aligned_cols=129 Identities=12% Similarity=0.177 Sum_probs=69.3
Q ss_pred HhhCCHHHHHHHHHHHHHhhcccHHHHHhhC---cch-hHHHHHHHh---------hhcCC------chHHHHHHHHHHH
Q psy3630 37 IVTRSEIDLGDIKQDYLKMYETTLEERIKDD---TSG-DYKRLLVAL---------SETSG------SLEDGYLSIVRCV 97 (172)
Q Consensus 37 l~~rs~~~l~~i~~~Y~~~yg~~L~~~i~~~---~sg-~~~~ll~~l---------~e~sg------~~~~al~~~~~~~ 97 (172)
++.+.+..+..++..++..........+... ..+ .|=.-++.+ .-|.| .+.+|+..+++..
T Consensus 246 l~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~i~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~ 325 (588)
T PF00888_consen 246 LFSRVPNGLESLRDAFKEYIKKEGQNIIDSFEKSSDPKEFIEDLLELYDKYEKLIQECFDNDSEFKKALDEAFEEFLNKN 325 (588)
T ss_dssp HHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHHHCS
T ss_pred HhhcccCCCchHHHHHHHHHHHHhHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhHHHHHHcC
Confidence 5566666777777777766555554444442 111 121112222 12333 3455555555444
Q ss_pred -hhhhHHHHHHHHhHhccCC--cC----hhhhhhhhc-cCCHHHHHHHHHHHHHhhchhHHHHHhhcCh--HHHHHHHHH
Q psy3630 98 -RDKSAYLAQRLENAMAGMG--TN----DRTLIRIIV-TRSEIDLGDIKQDYLKMYETTLEERIKVRNE--EERRRWVWS 167 (172)
Q Consensus 98 -~~~~~~~a~~l~~A~~g~g--td----~~~Li~il~-~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~s--G~~~~~ll~ 167 (172)
..++...|..++..+++.+ .+ +..+-.++. .+ .-.-|..|.+.|.+.|..++-...+ -+.++.++.
T Consensus 326 ~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~~~i~~l~~----~l~~Kd~F~~~Y~~~L~~RLl~~~~~~~~~E~~~i~ 401 (588)
T PF00888_consen 326 NNKIPELLAKYCDSLLRKSNKKLSEEEIEQKLDDIVKLFS----YLSDKDVFEKYYKKLLAKRLLSNKSFSEDAEKSMIE 401 (588)
T ss_dssp TSHHHHHHHHHHHHHHBSSCCCS-HCCHHHHHHHHHHHHT----TSSTHHHHHHHHHHHHHHHHHTT-BS-HHHHHHHHH
T ss_pred CcchHHHHHHHhhHhhhhcccccchHHHHHHhhhhEEEee----ecchhHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 3467888999999887644 11 111211111 01 1122788999999999999887644 456665555
Q ss_pred hc
Q psy3630 168 IQ 169 (172)
Q Consensus 168 l~ 169 (172)
.+
T Consensus 402 ~L 403 (588)
T PF00888_consen 402 KL 403 (588)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 30
>PRK06041 flagellar assembly protein J; Reviewed
Probab=25.77 E-value=5e+02 Score=23.50 Aligned_cols=43 Identities=14% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHhCCCCCHHHHHHHHhhCCHHHHHHHHHHHHH------hhcccHHHHHhh
Q psy3630 22 AMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLK------MYETTLEERIKD 66 (172)
Q Consensus 22 a~~g~g~de~~Li~il~~rs~~~l~~i~~~Y~~------~yg~~L~~~i~~ 66 (172)
++...|.+...+++.+..+ ++..++.+.+++ .+|.|+.++++.
T Consensus 85 aLs~sg~~~~eifr~la~~--~~yG~~s~E~~~Iv~~v~~~g~d~~~Al~~ 133 (553)
T PRK06041 85 VLSTTDIDRDEIFRILSEK--EEYGALAKEFRKIYVLVDKWNYSLAEACRF 133 (553)
T ss_pred HHHcCCCCHHHHHHHHhCc--hhhhHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5556678888888888733 336555555544 356666666653
No 31
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=23.82 E-value=1.7e+02 Score=23.16 Aligned_cols=44 Identities=9% Similarity=0.026 Sum_probs=27.9
Q ss_pred HHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhhchhHHH
Q psy3630 108 LENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEE 151 (172)
Q Consensus 108 l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~ 151 (172)
+..|..-+...+..+.+|-...--.+......+|++.||.+-.+
T Consensus 226 l~~A~~lL~~t~~sI~eIA~~~GF~~~s~F~r~FKk~~G~TP~~ 269 (278)
T PRK10296 226 INFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPGS 269 (278)
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcCHHH
Confidence 33444333323345777766554567888899999999987543
No 32
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.57 E-value=92 Score=21.11 Aligned_cols=41 Identities=7% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHhHhccCCcChhhhhhhhc-cCCHHHHHHHHHHHHHhhch
Q psy3630 107 RLENAMAGMGTNDRTLIRIIV-TRSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 107 ~l~~A~~g~gtd~~~Li~il~-~r~~~~~~~Ik~~y~~~yg~ 147 (172)
.|...++..|.+-+.++++-+ .+...++..+.+.|.+.|+.
T Consensus 37 nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 37 KIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAWVPP 78 (105)
T ss_pred HHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 366667666777666665543 25668899999999998874
No 33
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=23.50 E-value=89 Score=27.12 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.6
Q ss_pred HHHHHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHHhhc
Q psy3630 103 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYE 146 (172)
Q Consensus 103 ~~a~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~~yg 146 (172)
-+.+.+|+|+.-+|||..++-.+.-+|. ...||..|.+.-.
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~---RkqIKaKfi~Eek 411 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRE---RKQIKAKFIKEEK 411 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchh---HHHHHHHHHHHhh
Confidence 5678899999999999998877776665 5667777765443
No 34
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.46 E-value=88 Score=21.46 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=30.9
Q ss_pred HHHHhHhccCCcChhhhhhhhcc--CCHHHHHHHHHHHHHhhch
Q psy3630 106 QRLENAMAGMGTNDRTLIRIIVT--RSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 106 ~~l~~A~~g~gtd~~~Li~il~~--r~~~~~~~Ik~~y~~~yg~ 147 (172)
..+...++..|.+.+.++++.+- ....++..+.+.|.+.|+.
T Consensus 40 ~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~ 83 (111)
T cd02198 40 QNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKE 83 (111)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 45777777778777777766543 2457899999999998874
No 35
>PRK06041 flagellar assembly protein J; Reviewed
Probab=23.27 E-value=3e+02 Score=24.93 Aligned_cols=62 Identities=11% Similarity=0.235 Sum_probs=31.7
Q ss_pred HHHHhHhccCCcChhhhhhhhccCCHHHHHHHHHHHHH------hhchhHHHHHhhc----ChHHHHHHHHHhc
Q psy3630 106 QRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLK------MYETTLEERIKVR----NEEERRRWVWSIQ 169 (172)
Q Consensus 106 ~~l~~A~~g~gtd~~~Li~il~~r~~~~~~~Ik~~y~~------~yg~~L~~~i~~~----~sG~~~~~ll~l~ 169 (172)
-..-.+|...|.+...+.+.+..+ ++...+..++++ .+|.|+.++++.- .|-.+++++..+.
T Consensus 80 itym~aLs~sg~~~~eifr~la~~--~~yG~~s~E~~~Iv~~v~~~g~d~~~Al~~~a~~tPS~~l~~fl~~l~ 151 (553)
T PRK06041 80 ITYMAVLSTTDIDRDEIFRILSEK--EEYGALAKEFRKIYVLVDKWNYSLAEACRFVAKRTPSELFADFLDRLA 151 (553)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCc--hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 333344544455555566666522 335555555544 5666666666542 3444666555443
No 36
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=22.62 E-value=1.1e+02 Score=24.81 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHHHhhccc--HHHHHh
Q psy3630 40 RSEIDLGDIKQDYLKMYETT--LEERIK 65 (172)
Q Consensus 40 rs~~~l~~i~~~Y~~~yg~~--L~~~i~ 65 (172)
-+.+++..|+++|+..|..+ +.+.++
T Consensus 205 f~~e~i~alr~ayk~lfr~~~~~~e~~~ 232 (260)
T COG1043 205 FSREEIHALRKAYKLLFRSGLTLREALE 232 (260)
T ss_pred CCHHHHHHHHHHHHHHeeCCCCHHHHHH
Confidence 36799999999999999554 444444
No 37
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=21.59 E-value=1.2e+02 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHH
Q psy3630 133 DLGDIKQDYLKMYETTLEERIKVRNEEERRRWVW 166 (172)
Q Consensus 133 ~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll 166 (172)
=+..++.+++.+|---|+.+|-+.+.=||.++..
T Consensus 64 Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~ 97 (137)
T PF10788_consen 64 LIESLKNAQKENFELKLEKDILQQMPIDFEDVWA 97 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3678999999999999999999999999998654
No 38
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=21.42 E-value=1.2e+02 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=20.7
Q ss_pred hCCHHHHHHHHHHHHHhhccc--HHHHHh
Q psy3630 39 TRSEIDLGDIKQDYLKMYETT--LEERIK 65 (172)
Q Consensus 39 ~rs~~~l~~i~~~Y~~~yg~~--L~~~i~ 65 (172)
.-+++++..|+++|+..|... +.+.++
T Consensus 199 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 199 GFSSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 458999999999999999764 444443
No 39
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=21.00 E-value=1.1e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=29.7
Q ss_pred HHHHhHhccCCcChhhhhhhhc-cCCHHHHHHHHHHHHHhhch
Q psy3630 106 QRLENAMAGMGTNDRTLIRIIV-TRSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 106 ~~l~~A~~g~gtd~~~Li~il~-~r~~~~~~~Ik~~y~~~yg~ 147 (172)
..|...++..|.+-+.++++.+ .+...++..+.++|.+.|+.
T Consensus 57 ~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~ 99 (127)
T TIGR03610 57 ETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPG 99 (127)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 3466667666777777776543 24557899999999998873
No 40
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.89 E-value=2.1e+02 Score=22.50 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhchhHHHH
Q psy3630 132 IDLGDIKQDYLKMYETTLEER 152 (172)
Q Consensus 132 ~~~~~Ik~~y~~~yg~~L~~~ 152 (172)
.+.......|++.||.+=.+.
T Consensus 249 ~~~s~F~r~FKk~~G~TP~~y 269 (278)
T PRK13503 249 GDSNHFSTLFRREFSWSPRDI 269 (278)
T ss_pred CCHHHHHHHHHHHHCcCHHHH
Confidence 446777888999999876554
No 41
>PRK10130 transcriptional regulator EutR; Provisional
Probab=20.50 E-value=3.5e+02 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHHhhchhHHHHHhhc
Q psy3630 120 RTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKVR 156 (172)
Q Consensus 120 ~~Li~il~~r~~~~~~~Ik~~y~~~yg~~L~~~i~~~ 156 (172)
..+.+|-..---.+......+|++.||.+=.+.++..
T Consensus 309 ~sI~eIA~~~GF~~~s~Fs~~fk~~fG~tPs~Tlr~~ 345 (350)
T PRK10130 309 TTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQR 345 (350)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHCcCcHHHHHHh
Confidence 3466666544446788999999999999888877653
No 42
>KOG2875|consensus
Probab=20.20 E-value=2.6e+02 Score=23.36 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHhhcccHHHHHhhCcchhHHHHHHHhhhcCCchHHHHHHHHHHHhhhhHHHHHHHHhHhccCCcChh
Q psy3630 41 SEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVALSETSGSLEDGYLSIVRCVRDKSAYLAQRLENAMAGMGTNDR 120 (172)
Q Consensus 41 s~~~l~~i~~~Y~~~yg~~L~~~i~~~~sg~~~~ll~~l~e~sg~~~~al~~~~~~~~~~~~~~a~~l~~A~~g~gtd~~ 120 (172)
.++++++..--|+++|=..-...|.++-.| .+| ++.++..+-.+|...-..+.|+|+.-.
T Consensus 172 ~Ea~LR~~gfGYRAkYI~~ta~~l~~~~g~-----------------~~w---Lqsl~~~~yeear~~L~~lpGVG~KVA 231 (323)
T KOG2875|consen 172 VEAELRKLGFGYRAKYISATARALQEKQGG-----------------LAW---LQSLRKSSYEEAREALCSLPGVGPKVA 231 (323)
T ss_pred hHHHHHHcCcchhHHHHHHHHHHHHHhccc-----------------chH---HHHHhcccHHHHHHHHhcCCCCcchHh
Confidence 577888888888888877777777765444 111 222233333344444455678887655
Q ss_pred hhhhhhcc------CCHHHHHHHHHHHHHhhchhHHHHHhhcChHHHHHHHHHhc
Q psy3630 121 TLIRIIVT------RSEIDLGDIKQDYLKMYETTLEERIKVRNEEERRRWVWSIQ 169 (172)
Q Consensus 121 ~Li~il~~------r~~~~~~~Ik~~y~~~yg~~L~~~i~~~~sG~~~~~ll~l~ 169 (172)
.-|=.+.. ....++..|.+-| -..|.+=.+.++..+.|.-.+++..++
T Consensus 232 DCI~Lm~l~~~~~VPVDvHi~ria~~y-~l~~~~g~k~l~~ki~~ev~~~f~~~~ 285 (323)
T KOG2875|consen 232 DCICLMSLDKLSAVPVDVHIWRIAQDY-ILPGLSGAKELTPKINGEVSNFFRSLW 285 (323)
T ss_pred hhhhhhhcCCCCcccchhhHHHHhhcc-cCCCccccccCCcchhHHHHHHHHHHh
Confidence 44332221 2234456777766 333333222233333444444444443
No 43
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=20.15 E-value=4.2e+02 Score=20.55 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHhHhccCCcCh--hhhhhhhcc--CCHHHHHHHHHHHHHhhchhHHHHHhhc
Q psy3630 86 LEDGYLSIVRCVRDKSAYLAQRLENAMAGMGTND--RTLIRIIVT--RSEIDLGDIKQDYLKMYETTLEERIKVR 156 (172)
Q Consensus 86 ~~~al~~~~~~~~~~~~~~a~~l~~A~~g~gtd~--~~Li~il~~--r~~~~~~~Ik~~y~~~yg~~L~~~i~~~ 156 (172)
+..||.++..+...-.+..++....|....|+.+ ..|+++... +.+.++..+.+.+...+-.+|++.+..+
T Consensus 22 Y~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d 96 (219)
T PF08397_consen 22 YQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEED 96 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444334444444555555444332 234444432 2335566677777777777777666654
No 44
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.13 E-value=1.2e+02 Score=21.09 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHhHhccCCcC-----hhhhhhhhcc-CCHHHHHHHHHHHHHhhch
Q psy3630 106 QRLENAMAGMGTN-----DRTLIRIIVT-RSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 106 ~~l~~A~~g~gtd-----~~~Li~il~~-r~~~~~~~Ik~~y~~~yg~ 147 (172)
+.|...++..|.+ -+.++++.+- +...++..+.+.|.+.|+.
T Consensus 43 ~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~~~~~v~~~~f~~ 90 (114)
T cd06153 43 ENIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLPAVRAILAARLGP 90 (114)
T ss_pred HHHHHHHHHcCCCCCccchhheeEEEEEEccHHHHHHHHHHHHHHcCC
Confidence 3466666666666 6666654432 4557899999999999874
No 45
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.00 E-value=1.2e+02 Score=21.11 Aligned_cols=42 Identities=14% Similarity=0.227 Sum_probs=29.9
Q ss_pred HHHHhHhccCCcChhhhhhhhcc-CCHHHHHHHHHHHHHhhch
Q psy3630 106 QRLENAMAGMGTNDRTLIRIIVT-RSEIDLGDIKQDYLKMYET 147 (172)
Q Consensus 106 ~~l~~A~~g~gtd~~~Li~il~~-r~~~~~~~Ik~~y~~~yg~ 147 (172)
..+...++..|.+-+.++++.+- +..+++..+.+.|.+.|+.
T Consensus 51 ~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~~~~~~~~~~~f~~ 93 (119)
T cd06154 51 EIIEAALAEAGASLEDVVRTRMYVTDIADFEAVGRAHGEVFGD 93 (119)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 34566666667777777766543 4568889999999988873
Done!