RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3630
(172 letters)
>gnl|CDD|201070 pfam00191, Annexin, Annexin. This family of annexins also
includes giardin that has been shown to function as an
annexin.
Length = 66
Score = 86.0 bits (214), Expect = 6e-23
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 14 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYK 73
Y A+ L AM G+GT++ TLIRI+ TRS L I++ Y K+Y LE+ IK +TSGD++
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIKSETSGDFE 60
Query: 74 RLLVAL 79
+LL+AL
Sbjct: 61 KLLLAL 66
Score = 62.8 bits (154), Expect = 5e-14
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 103 YLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 154
Y A+ L AM G+GT++ TLIRI+ TRS L I++ Y K+Y LE+ IK
Sbjct: 1 YDAELLRAAMKGLGTDEDTLIRILATRSNAQLQAIREAYKKLYGKDLEKDIK 52
>gnl|CDD|197661 smart00335, ANX, Annexin repeats.
Length = 53
Score = 74.0 bits (183), Expect = 2e-18
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 27 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIKDDTSGDYKRLLVAL 79
GT+++TLI I+ +RS L IKQ Y K Y LE+ IK +TSGD+++LL+AL
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53
Score = 50.9 bits (123), Expect = 2e-09
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 116 GTNDRTLIRIIVTRSEIDLGDIKQDYLKMYETTLEERIK 154
GT+++TLI I+ +RS L IKQ Y K Y LE+ IK
Sbjct: 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIK 39
>gnl|CDD|218200 pfam04666, Glyco_transf_54, N-Acetylglucosaminyltransferase-IV
(GnT-IV) conserved region. The complex-type of
oligosaccharides are synthesised through elongation by
glycosyltransferases after trimming of the precursor
oligosaccharides transferred to proteins in the
endoplasmic reticulum. N-Acetylglucosaminyltransferases
(GnTs) take part in the formation of branches in the
biosynthesis of complex-type sugar chains. In
vertebrates, six GnTs, designated as GnT-I to -VI, which
catalyze the transfer of GlcNAc to the core mannose
residues of Asn-linked sugar chains, have been
identified. GnT-IV (EC:2.4.1.145) catalyzes the transfer
of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of
core oligosaccharide [Gn2(22)core oligosaccharide] and
forms GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core
oligosaccharide (Gn3(2,4,2)core oligosaccharide). In
some members the conserved region occupies all but the
very for N-terminal, where there is a signal sequence on
all members. For other members the conserved region does
not occupy the entire protein but is still to the
N-terminus of the protein.
Length = 301
Score = 28.5 bits (64), Expect = 1.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 9 RDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQ 50
R K +YL L++ ++GM + + ++V ++ D +KQ
Sbjct: 67 RSKQSYLLDTLQSLISGMSEEELEDMVVVVFVADTDPDYVKQ 108
Score = 28.5 bits (64), Expect = 1.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 98 RDKSAYLAQRLENAMAGMGTNDRTLIRIIVTRSEIDLGDIKQ 139
R K +YL L++ ++GM + + ++V ++ D +KQ
Sbjct: 67 RSKQSYLLDTLQSLISGMSEEELEDMVVVVFVADTDPDYVKQ 108
>gnl|CDD|236998 PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole
synthase protein; Provisional.
Length = 326
Score = 27.4 bits (61), Expect = 4.0
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 70 GDYKRLLVALSETSGSLE----DGYLSIVRCVRDKSAYLAQRLENAMA------------ 113
GD K L + ET + E +G+ +V C D A A+RLE+A A
Sbjct: 174 GDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIA--AKRLEDAGAVAVMPLGAPIGS 231
Query: 114 GMGTNDRTLIRIIVTRSEI 132
G+G + IR+IV + +
Sbjct: 232 GLGIQNPYTIRLIVEGATV 250
>gnl|CDD|225938 COG3403, COG3403, Uncharacterized conserved protein [Function
unknown].
Length = 257
Score = 27.1 bits (60), Expect = 4.7
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 55 MYETTLEERIKDDTSGDYKRLLVALSETSGSLEDGYLSIVRCVRDKSAYLAQRLENAMAG 114
+Y+ +L ERI++ + L A E G D + C+ + ++L +L A+ G
Sbjct: 5 VYQKSLLERIREPLPAWQRELFEAFREKIGDDRDPF----PCIPGRQSFLTDQLRIAVVG 60
Query: 115 MGTNDRTL 122
+
Sbjct: 61 DLRSPSAA 68
>gnl|CDD|217962 pfam04201, TPD52, Tumour protein D52 family. The hD52 gene was
originally identified through its elevated expression
level in human breast carcinoma. Cloning of D52
homologues from other species has indicated that D52 may
play roles in calcium-mediated signal transduction and
cell proliferation. Two human homologues of hD52, hD53
and hD54, have also been identified, demonstrating the
existence of a novel gene/protein family. These proteins
have an amino terminal coiled-coil that allows members
to form homo- and heterodimers with each other.
Length = 162
Score = 26.1 bits (57), Expect = 9.1
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 41 SEIDLGDIKQDYLKMYETTLEERI---------KDDTSGDYKRLL--VALSETSGSLEDG 89
++I L + +++ L+ LEE I K+ + KR L LSE ++
Sbjct: 22 TKIVLSEAEKEELRTELAKLEEEISTLRQVLAAKEKHLAELKRKLGLTPLSELKQNISKS 81
Query: 90 YLSIVRCVRDKSAYLAQRLENAMAGMGT 117
+ V SAY Q+ A A +G+
Sbjct: 82 W----HDVTATSAYKGQKTSAAAASVGS 105
>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 26.4 bits (59), Expect = 9.1
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 29 NDRTLIRIIVTRSEID---------LGDIKQDYLKMYETTLEERIKDDTS----GDYKRL 75
D T+I I V +EID +GDI L + L+ S + +
Sbjct: 291 GDATIIHIDVLPAEIDNYYQPERELIGDIAAT-LDLLAEKLDGLSLSPQSLEILEELRAQ 349
Query: 76 LVALSETSGSLEDGY---LSIVRCVRD 99
L L+E LE+G L I+R ++D
Sbjct: 350 LEELAERPARLEEGAVHPLRIIRALQD 376
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.372
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,868,076
Number of extensions: 823137
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 29
Length of query: 172
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 82
Effective length of database: 6,945,742
Effective search space: 569550844
Effective search space used: 569550844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)