RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3631
(184 letters)
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 157 bits (397), Expect = 1e-47
Identities = 62/156 (39%), Positives = 81/156 (51%), Gaps = 32/156 (20%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEES 85
TV A F+ DA+VLR AMKG GTDE +II VLA R+ QRQEI A+K+ G
Sbjct: 9 GTVKAASGFNATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIG---- 64
Query: 86 FDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
+DL++DLKSEL NFE I+ +MTP +
Sbjct: 65 ----------------------------RDLLEDLKSELSSNFEQVILGMMTPTVLYDVQ 96
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
EL AM G GTDE ++EIL++ + IR I + Y+
Sbjct: 97 ELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQ 132
Score = 78.5 bits (193), Expect = 7e-18
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
D + LR AMKG GTDE +I++LA R+ ++ + I ++ +G+
Sbjct: 94 DVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGR---------------- 137
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTP-----------LPELYAKEL 147
L +D+ S+ F+ +V+L L + A++L
Sbjct: 138 ----------------SLEEDICSDTSFMFQRVLVSLTAGGRDEGNYLDDALVKQDAQDL 181
Query: 148 HDAMSGV-GTDEEAIVEILSTLSNYGIRTIAEVYEN 182
++A GTDE + IL + + + + + Y+
Sbjct: 182 YEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKR 217
Score = 66.9 bits (163), Expect = 1e-13
Identities = 34/170 (20%), Positives = 66/170 (38%), Gaps = 36/170 (21%)
Query: 17 YRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADA 75
L D DA+ L A + +GTDE + +L R+ + D
Sbjct: 155 LVSLTAGGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDE 214
Query: 76 FKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL 135
+K + K D+ +KSE G+FEDA++A+
Sbjct: 215 YKRISQK--------------------------------DIEQSIKSETSGSFEDALLAI 242
Query: 136 MTPL---PELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ + P +A+ L+ +M G+GTD+ ++ ++ + + + I ++
Sbjct: 243 VKCMRNKPAYFAERLYKSMKGLGTDDSTLIRVMVSRAEIDMLDIRANFKR 292
Score = 51.9 bits (124), Expect = 2e-08
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 33/136 (24%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIID 59
++ + + S+ S F+ L +V P AE L +MKG GTD+ ++I
Sbjct: 214 EYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMKGLGTDDSTLIR 273
Query: 60 VLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDD 119
V+ R+ +I FK L+GK L
Sbjct: 274 VMVSRAEIDMLDIRANFKRLYGK--------------------------------SLYSF 301
Query: 120 LKSELGGNFEDAIVAL 135
+K + G++ ++ L
Sbjct: 302 IKGDTSGDYRKVLLIL 317
Score = 50.0 bits (119), Expect = 9e-08
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 144 AKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
A+ L AM G+GTDE+AI+ +L+ + + I Y++
Sbjct: 23 AQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKS 61
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid
binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Length = 327
Score = 157 bits (397), Expect = 1e-47
Identities = 71/163 (43%), Positives = 88/163 (53%), Gaps = 32/163 (19%)
Query: 20 LFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTL 79
+Q TV + F+P+ DAE L AMKG GT+EQ+IIDVL KRSN QRQ+IA +FK
Sbjct: 7 WIEQEGVTVKSSSHFNPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQ 66
Query: 80 FGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPL 139
FG +DL + LKSEL G FE IVALM P
Sbjct: 67 FG--------------------------------KDLTETLKSELSGKFERLIVALMYPP 94
Query: 140 PELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
AKELHDAM G+GT E I+EIL++ + +R I + YE
Sbjct: 95 YRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEE 137
Score = 79.2 bits (195), Expect = 4e-18
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 45/157 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
+A+ L AMKG GT E II++LA R+ Q +EI A++ +G
Sbjct: 98 EAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGS---------------- 141
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT------------PLPELYAKE 146
L +D++++ G E +V L+ L A++
Sbjct: 142 ----------------SLEEDIQADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQD 185
Query: 147 LHDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L+ A GTDE + IL T S + + E YE
Sbjct: 186 LYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEK 222
Score = 72.3 bits (177), Expect = 1e-15
Identities = 35/181 (19%), Positives = 61/181 (33%), Gaps = 41/181 (22%)
Query: 11 SSLGSTYRCLFQQCL-----PTVVPADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKR 64
+ + L DP DA+ L AA + GTDE I +L R
Sbjct: 149 ADTSGYLERILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEKIRGTDEMKFITILCTR 208
Query: 65 SNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSEL 124
S + + ++ + K + D +KSE
Sbjct: 209 SATHLLRVFEEYEKIANK--------------------------------SIEDSIKSET 236
Query: 125 GGNFEDA---IVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
G+ E+A +V L +A+ L+ AM G GT + ++ + + S + I ++
Sbjct: 237 HGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAGTRDGTLIRNIVSRSEIDLNLIKCHFK 296
Query: 182 N 182
Sbjct: 297 K 297
Score = 56.9 bits (137), Expect = 3e-10
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 33/136 (24%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIID 59
E+ + + S+ S ++ + TVV + AE L AMKG GT + ++I
Sbjct: 219 EYEKIANKSIEDSIKSETHGSLEEAMLTVVKCTQNLHSYFAERLYYAMKGAGTRDGTLIR 278
Query: 60 VLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDD 119
+ RS I FK ++GK L
Sbjct: 279 NIVSRSEIDLNLIKCHFKKMYGK--------------------------------TLSSM 306
Query: 120 LKSELGGNFEDAIVAL 135
+ + G++++A+++L
Sbjct: 307 IMEDTSGDYKNALLSL 322
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 155 bits (394), Expect = 3e-47
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 32/156 (20%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEES 85
TV F P+ DAE ++ A++G GTDE+ +I +L +RSN QRQ I ++ +G
Sbjct: 10 GTVRDYPDFSPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYG---- 65
Query: 86 FDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
++L DDLK +L G+FE +VAL+TP AK
Sbjct: 66 ----------------------------KELKDDLKGDLSGHFEHLMVALVTPPAVFDAK 97
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
+L +M G GT+E+A++EIL+T ++ ++ I++ Y
Sbjct: 98 QLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYY 133
Score = 78.1 bits (192), Expect = 1e-17
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA+ L+ +MKG GT+E ++I++L R+++Q ++I+ A+ T++ K
Sbjct: 95 DAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKK---------------- 138
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT-----------PLPELYAKEL 147
L DD+ SE G+F A++ L L + A+ L
Sbjct: 139 ----------------SLGDDISSETSGDFRKALLTLADGRRDESLKVDEHLAKQDAQIL 182
Query: 148 HDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ A GTDE+ EIL S ++ + Y N
Sbjct: 183 YKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRN 218
Score = 72.3 bits (177), Expect = 1e-15
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 36/168 (21%)
Query: 19 CLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFK 77
L + D DA++L A + +GTDE ++L RS Q + D ++
Sbjct: 158 TLADGRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYR 217
Query: 78 TLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFED---AIVA 134
+ K D++D +K EL G+FED AIV
Sbjct: 218 NISQK--------------------------------DIVDSIKGELSGHFEDLLLAIVN 245
Query: 135 LMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ P A+ LH A+ G+GTDE + I+ + S + I ++
Sbjct: 246 CVRNTPAFLAERLHRALKGIGTDEFTLNRIMVSRSEIDLLDIRTEFKK 293
Score = 54.6 bits (131), Expect = 2e-09
Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 33/134 (24%)
Query: 3 EQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVL 61
+ S+ F+ L +V P AE L A+KG GTDE ++ ++
Sbjct: 217 RNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALKGIGTDEFTLNRIM 276
Query: 62 AKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLK 121
RS +I FK +G L +K
Sbjct: 277 VSRSEIDLLDIRTEFKKHYGY--------------------------------SLYSAIK 304
Query: 122 SELGGNFEDAIVAL 135
S+ G++E ++ +
Sbjct: 305 SDTSGDYEITLLKI 318
Score = 50.7 bits (121), Expect = 5e-08
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 140 PELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
P + A+ + A+ G+GTDE+ ++ IL+ SN + I + Y+
Sbjct: 20 PSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQA 62
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 154 bits (391), Expect = 9e-47
Identities = 64/157 (40%), Positives = 83/157 (52%), Gaps = 32/157 (20%)
Query: 25 LPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEE 84
TV PFD DAE LR AMKG GTDE++I+ +L R+N QRQEIA AFKTLFG
Sbjct: 5 RGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFG--- 61
Query: 85 SFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYA 144
+DL+DDLKSEL G FE +V+LM P A
Sbjct: 62 -----------------------------RDLVDDLKSELTGKFETLMVSLMRPARIFDA 92
Query: 145 KELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
L A+ G GT+E+ + EIL++ + ++ I +VY
Sbjct: 93 HALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYM 129
Score = 75.8 bits (186), Expect = 7e-17
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA L+ A+KG GT+E+ + ++LA R+ + Q I + +
Sbjct: 91 DAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEA---------------- 134
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT-----------PLPELYAKEL 147
+L D + E G+F+ +V L+ L E A+ L
Sbjct: 135 ----------------NLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVL 178
Query: 148 HDAMSGV-GTDEEAIVEILSTLSNYGIRTIAEVYEN 182
A GTDEE + IL T S +R + + Y
Sbjct: 179 FRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMT 214
Score = 69.6 bits (170), Expect = 9e-15
Identities = 34/168 (20%), Positives = 64/168 (38%), Gaps = 36/168 (21%)
Query: 19 CLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFK 77
L Q D DA+VL A + +GTDE++ I +L RS + + D +
Sbjct: 154 VLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYM 213
Query: 78 TLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFED---AIVA 134
T+ G + + + E G+ E A+V
Sbjct: 214 TISGF--------------------------------QIEETIDRETSGDLEKLLLAVVK 241
Query: 135 LMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ +P +A+ L+ +M G GTD++ ++ ++ + S + I +
Sbjct: 242 CIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRK 289
Score = 54.2 bits (130), Expect = 3e-09
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 33/136 (24%)
Query: 1 MGEQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIID 59
+ ++ ++ L VV P AE L +MKG GTD+ ++I
Sbjct: 211 KYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIR 270
Query: 60 VLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDD 119
V+ RS +I F+ F K L
Sbjct: 271 VMVSRSEIDLLDIRHEFRKNFAK--------------------------------SLYQM 298
Query: 120 LKSELGGNFEDAIVAL 135
++ + G++ A++ L
Sbjct: 299 IQKDTSGDYRKALLLL 314
Score = 49.6 bits (118), Expect = 1e-07
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 144 AKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
A+ L AM G+GTDEE I++IL++ +N + IA ++
Sbjct: 20 AEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKT 58
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form,
FULL-length protein comprising protein core and
N-terminal domain, metal; 1.80A {Sus scrofa} SCOP:
a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Length = 346
Score = 152 bits (386), Expect = 9e-46
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 9 FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQ 68
+ T + V P F+P+ D E L A+ G DE +II++L KR+N Q
Sbjct: 17 EEQEYIKTVKGSKGGPGSAVSPYPTFNPSSDVEALHKAITVKGVDEATIIEILTKRTNAQ 76
Query: 69 RQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNF 128
RQ+I A+ G + L + LK L G+
Sbjct: 77 RQQIKAAYLQEKG--------------------------------KPLDEALKKALTGHL 104
Query: 129 EDAIVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
E+ +AL+ + A EL AM G+GTDE+ + EIL++ +N IR I VY+
Sbjct: 105 EEVALALLKTPAQFDADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYK 157
Score = 80.8 bits (199), Expect = 1e-18
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA+ LRAAMKG GTDE ++ ++LA R+N++ +EI +K +
Sbjct: 119 DADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKR---------------- 162
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT-----------PLPELYAKEL 147
DL D+ S+ G+++ A+++L L + A+ L
Sbjct: 163 ----------------DLAKDITSDTSGDYQKALLSLAKGDRSEDLAINDDLADTDARAL 206
Query: 148 HDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
++A GTD + IL+T S +R + + Y
Sbjct: 207 YEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSK 242
Score = 68.5 bits (167), Expect = 3e-14
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 36/157 (22%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDP 88
+ + DA L A + GTD I +L RS + + +
Sbjct: 193 AINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKH------ 246
Query: 89 AVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL---MTPLPELYAK 145
D+ L EL G+ E+ + + T P +A+
Sbjct: 247 --------------------------DMNKVLDLELKGDIENCLTVVVKCATSKPMFFAE 280
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+LH AM G+GT + ++ I+ + S + I Y+
Sbjct: 281 KLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQK 317
Score = 58.5 bits (141), Expect = 1e-10
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDE 158
V L Q Q+ I +K GG A+ T P + LH A++ G DE
Sbjct: 4 VSEFLKQAWFIDNEEQEYIKTVKGSKGGP-GSAVSPYPTFNPSSDVEALHKAITVKGVDE 62
Query: 159 EAIVEILSTLSNYGIRTIAEVYEN 182
I+EIL+ +N + I Y
Sbjct: 63 ATIIEILTKRTNAQRQQIKAAYLQ 86
Score = 48.5 bits (115), Expect = 3e-07
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 32/97 (32%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
AE L AMKG GT +++I ++ RS +I ++ L+G
Sbjct: 278 FAEKLHQAMKGIGTRHKTLIRIMVSRSEIDMNDIKACYQKLYGI---------------- 321
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL 135
L + E G++E +VAL
Sbjct: 322 ----------------SLCQAILDETKGDYEKILVAL 342
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Length = 315
Score = 150 bits (380), Expect = 3e-45
Identities = 63/156 (40%), Positives = 82/156 (52%), Gaps = 32/156 (20%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEES 85
TV P F+ DAE LR AMKG GTDE+SI +LA RSN QRQ+I + TLFG
Sbjct: 4 GTVKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFG---- 59
Query: 86 FDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
+ L D+LKSEL GN+E A +AL+ E A+
Sbjct: 60 ----------------------------KHLEDELKSELSGNYEAAALALLRKPDEFLAE 91
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
+LH AM G+GTD+ A+++IL T SN I I ++
Sbjct: 92 QLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFK 127
Score = 81.5 bits (201), Expect = 4e-19
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
AE L AAMKG GTD+ ++ID+L +SN Q I AFK L+ +
Sbjct: 89 LAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKE---------------- 132
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT-----------PLPELYAKEL 147
DL ++ SE GNF+ +V+++ A +
Sbjct: 133 ----------------DLEKEIISETSGNFQRLLVSMLQGGRKEDEPVNAAHAAEDAAAI 176
Query: 148 HDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ A G +GTDE +L+T S + I Y
Sbjct: 177 YQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSK 212
Score = 71.9 bits (176), Expect = 2e-15
Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 36/157 (22%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDP 88
P + DA + A +G GTDE VLA RS Q +I + + K
Sbjct: 163 PVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNK------ 216
Query: 89 AVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL---MTPLPELYAK 145
++ +++E G+ ++ ++A+ + +A+
Sbjct: 217 --------------------------TILQAIENEFSGDIKNGLLAIVKSVENRFAYFAE 250
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
LH AM G+GT ++ ++ IL + S + I E ++
Sbjct: 251 RLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQA 287
Score = 52.6 bits (126), Expect = 8e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 32/98 (32%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
AE L AMKG GT ++++I +L RS I + F+ ++GK
Sbjct: 248 FAERLHHAMKGLGTSDKTLIRILVSRSEIDLANIKETFQAMYGK---------------- 291
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALM 136
L + + + G+++D ++ +
Sbjct: 292 ----------------SLYEFIADDCSGDYKDLLLQIT 313
Score = 48.0 bits (114), Expect = 3e-07
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 132 IVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ + A+ L AM G+GTDE++I IL+T SN + I Y
Sbjct: 6 VKPHASFNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTT 56
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation,
mutant T356D, lipid binding protein; 2.65A {Homo
sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Length = 672
Score = 154 bits (389), Expect = 4e-44
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 32/156 (20%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEES 85
++ FDPN DAE L AMKGFG+D+++I+D++ RSN+QRQE+ ++K+L+G
Sbjct: 11 GSIHDFPGFDPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLYG---- 66
Query: 86 FDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
+DLI DLK EL G FE IV LM P AK
Sbjct: 67 ----------------------------KDLIADLKYELTGKFERLIVGLMRPPAYCDAK 98
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
E+ DA+SG+GTDE+ ++EIL++ +N + + Y+
Sbjct: 99 EIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYK 134
Score = 147 bits (372), Expect = 1e-41
Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 32/160 (20%)
Query: 22 QQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFG 81
+ V PA+ F+P+ DA+ LR AMKG GTDE +IID++ RSN QRQ+I FK+ FG
Sbjct: 350 VELKGDVRPANDFNPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFG 409
Query: 82 KEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPE 141
+DL+ DLKSE+ G+ I+ LM P
Sbjct: 410 --------------------------------RDLMTDLKSEISGDLARLILGLMMPPAH 437
Query: 142 LYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
AK+L AM G GTDE+A++EIL+T +N IR I E Y+
Sbjct: 438 YDAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYK 477
Score = 83.9 bits (207), Expect = 2e-19
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 44/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA+ ++ A+ G GTDE+ +I++LA R+N+Q ++ A+K + +
Sbjct: 96 DAKEIKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYER---------------- 139
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT-----------PLPELYAKEL 147
DL D+ + G+F+ +V L+ L + ++L
Sbjct: 140 ----------------DLEADIIGDTSGHFQKMLVVLLQGTREEDDVVSEDLVQQDVQDL 183
Query: 148 HDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
++A GTDE + IL S +R + + Y
Sbjct: 184 YEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLK 219
Score = 82.8 bits (204), Expect = 5e-19
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 49/161 (30%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA+ L+ AM+G GTDE+++I++LA R+N + + I +A+K + K
Sbjct: 439 DAKQLKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHK---------------- 482
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTP----------------LPEL 142
L D L S+ G+F +++L T
Sbjct: 483 ----------------SLEDALSSDTSGHFRRILISLATGHREEGGENLDQAREDAQVAA 526
Query: 143 YAKELHDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
E+ D SG + E + IL T S +R + + +
Sbjct: 527 EILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIK 567
Score = 80.8 bits (199), Expect = 3e-18
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 8/152 (5%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGK--------EESFDPAV 90
AE L AMKG GT + ++I ++ RS +I + F+T + K + S +
Sbjct: 255 FAERLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRTKYEKSLYSMIKNDTSGEYKK 314
Query: 91 TTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDA 150
T L Q + +L + + + P+ AK L A
Sbjct: 315 TLLKLSGGDDDAAGQFFPEAAQVAYQMWELSAVARVELKGDVRPANDFNPDADAKALRKA 374
Query: 151 MSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
M G+GTDE+ I++I++ SN + I + +++
Sbjct: 375 MKGLGTDEDTIIDIITHRSNVQRQQIRQTFKS 406
Score = 73.1 bits (179), Expect = 1e-15
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 36/157 (22%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDP 88
D + L A + +GTDE I +L RS Q + + D + GK
Sbjct: 170 VVSEDLVQQDVQDLYEAGELKWGTDEAQFIYILGNRSKQHLRLVFDEYLKTTGK------ 223
Query: 89 AVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL---MTPLPELYAK 145
+ ++ EL G+FE ++A+ + PE +A+
Sbjct: 224 --------------------------PIEASIRGELSGDFEKLMLAVVKCIRSTPEYFAE 257
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L AM G+GT + ++ I+ + S + I E++
Sbjct: 258 RLFKAMKGLGTRDNTLIRIMVSRSELDMLDIREIFRT 294
Score = 68.5 bits (167), Expect = 4e-14
Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 36/148 (24%)
Query: 39 DAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYH 97
+ + G + E + +L RS + + F +
Sbjct: 527 EILEIADTPSGDKTSLETRFMTILCTRSYPHLRRVFQEFIKMTNY--------------- 571
Query: 98 NVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPL---PELYAKELHDAMSGV 154
D+ +K E+ G+ DA VA++ + P +A +L+ +M G
Sbjct: 572 -----------------DVEHTIKKEMSGDVRDAFVAIVQSVKNKPLFFADKLYKSMKGA 614
Query: 155 GTDEEAIVEILSTLSNYGIRTIAEVYEN 182
GTD++ + I+ + S + I +
Sbjct: 615 GTDDKTLTRIMVSRSEIDLLNIRREFIE 642
Score = 53.1 bits (127), Expect = 8e-09
Identities = 21/128 (16%), Positives = 42/128 (32%), Gaps = 32/128 (25%)
Query: 9 FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQ 68
+ ++ + +V + P A+ L +MKG GTD++++ ++ RS
Sbjct: 573 VEHTIKKEMSGDVRDAFVAIVQSVKNKPLFFADKLYKSMKGAGTDDKTLTRIMVSRSEID 632
Query: 69 RQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNF 128
I F + K L ++ + G+F
Sbjct: 633 LLNIRREFIEKYDK--------------------------------SLHQAIEGDTSGDF 660
Query: 129 EDAIVALM 136
A++AL
Sbjct: 661 LKALLALC 668
Score = 50.8 bits (121), Expect = 5e-08
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 121 KSELGGNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVY 180
K G + +I P A+ L+ AM G G+D+EAI++I+++ SN + + + Y
Sbjct: 2 KPAQGAKYRGSIHDFPGFDPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSY 61
Query: 181 EN 182
++
Sbjct: 62 KS 63
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein;
2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A
1ycn_A 2q4c_A 1dk5_A
Length = 321
Score = 144 bits (365), Expect = 7e-43
Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 32/154 (20%)
Query: 28 VVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFD 87
VP + D E LR A G+GT+E IID+L R+ +QR I + +G
Sbjct: 10 TVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYG------ 63
Query: 88 PAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAKEL 147
+DL+ L EL +FE ++ E A
Sbjct: 64 --------------------------EDLLKALDKELSNDFERLVLLWALDPAERDALLA 97
Query: 148 HDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYE 181
++A + + ++EI T S + + Y
Sbjct: 98 NEATKRWTSSNQVLMEIACTRSANQLLHARQAYH 131
Score = 77.3 bits (190), Expect = 2e-17
Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 43/155 (27%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA + A K + + Q ++++ RS Q A+ + K
Sbjct: 93 DALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKK---------------- 136
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTP-----------LPELYAKEL 147
L +D+ G+F ++ L++ L + AK L
Sbjct: 137 ----------------SLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLL 180
Query: 148 HDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
H+ +S ++ ++ +L+T S I Y+N
Sbjct: 181 HEKISNKAYSDDDVIRVLATRSKAQINATLNHYKN 215
Score = 74.6 bits (183), Expect = 2e-16
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 35/156 (22%)
Query: 30 PADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPA 89
+ +A++L + + +I VLA RS Q + +K +G
Sbjct: 167 EVNMTLAKTEAKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGN------- 219
Query: 90 VTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPL---PELYAKE 146
D+ DLK++ F + + + L + + K
Sbjct: 220 -------------------------DINKDLKADPKDEFLALLRSTVKCLVYPEKYFEKV 254
Query: 147 LHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L A++ GTDE A+ ++ T + ++ IA+ Y+
Sbjct: 255 LRLAINRRGTDEGALTRVVCTRAEVDLKVIADEYQR 290
Score = 66.1 bits (161), Expect = 2e-13
Identities = 14/57 (24%), Positives = 22/57 (38%)
Query: 126 GNFEDAIVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ V P ++L A SG GT+E I++IL + I + Y
Sbjct: 4 HHHATLTVPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAE 60
Score = 55.0 bits (132), Expect = 2e-09
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 33/134 (24%)
Query: 3 EQQYCRF-DSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVL 61
+ +Y + L + + F L + V + +VLR A+ GTDE ++ V+
Sbjct: 214 KNEYGNDINKDLKADPKDEFLALLRSTVKCLVYPEKYFEKVLRLAINRRGTDEGALTRVV 273
Query: 62 AKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLK 121
R+ + IAD ++ L +
Sbjct: 274 CTRAEVDLKVIADEYQRRNSV--------------------------------PLTRAIV 301
Query: 122 SELGGNFEDAIVAL 135
+ G++E ++ L
Sbjct: 302 KDTHGDYEKLLLVL 315
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein,
helix BUN heparin, hexasaccharide, metal binding
protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB:
2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Length = 308
Score = 141 bits (358), Expect = 6e-42
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 32/148 (21%)
Query: 34 FDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTK 93
FD DA + A+K G DE +I+++L RSN QRQ+IA A++
Sbjct: 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTK------------ 49
Query: 94 LLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSG 153
++L LKS L G+ E I+ L+ + A EL +M G
Sbjct: 50 --------------------KELASALKSALSGHLETVILGLLKTPAQYDASELKASMKG 89
Query: 154 VGTDEEAIVEILSTLSNYGIRTIAEVYE 181
+GTDE++++EI+ + +N ++ I VY+
Sbjct: 90 LGTDEDSLIEIICSRTNQELQEINRVYK 117
Score = 82.3 bits (203), Expect = 3e-19
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 45/157 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
DA L+A+MKG GTDE S+I+++ R+NQ+ QEI +K ++
Sbjct: 79 DASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKT---------------- 122
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTP------------LPELYAKE 146
DL D+ S+ G+F +VAL L + A++
Sbjct: 123 ----------------DLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARD 166
Query: 147 LHDAMSG-VGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L+DA GTD + I++ S ++ + + Y++
Sbjct: 167 LYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKS 203
Score = 70.3 bits (172), Expect = 5e-15
Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 36/157 (22%)
Query: 30 PADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDP 88
D + DA L A GTD I ++ +RS Q++ D +K+
Sbjct: 154 VIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPY------ 207
Query: 89 AVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFED---AIVALMTPLPELYAK 145
D+++ ++ E+ G+ E+ +V + P +A
Sbjct: 208 --------------------------DMLESIRKEVKGDLENAFLNLVQCIQNKPLYFAD 241
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L+D+M G GT ++ ++ I+ + S + I ++
Sbjct: 242 RLYDSMKGKGTRDKVLIRIMVSRSEVDMLKIRSEFKR 278
Score = 51.8 bits (124), Expect = 1e-08
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 140 PELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
E A + A+ G DE IV IL+ SN + IA Y+
Sbjct: 4 AERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQR 46
Score = 50.7 bits (121), Expect = 4e-08
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 33/134 (24%)
Query: 3 EQQYCR-FDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVL 61
+ S+ + + +V P A+ L +MKG GT ++ +I ++
Sbjct: 202 KSYSPYDMLESIRKEVKGDLENAFLNLVQCIQNKPLYFADRLYDSMKGKGTRDKVLIRIM 261
Query: 62 AKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLK 121
RS +I FK +GK L ++
Sbjct: 262 VSRSEVDMLKIRSEFKRKYGK--------------------------------SLYYYIQ 289
Query: 122 SELGGNFEDAIVAL 135
+ G+++ A++ L
Sbjct: 290 QDTKGDYQKALLYL 303
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein;
1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Length = 337
Score = 133 bits (335), Expect = 2e-38
Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 35/157 (22%)
Query: 29 VPADPFDPNGDAE-VLRAAMKGFGTDEQ--SIIDVLAKRSNQQRQEIADAFKTLFGKEES 85
+ + + V++ ++ + + +I++ Q + + F+ + G
Sbjct: 1 MANKNYQMSTGVTAVVQKVVEACQDESKRLDLIEIARSYPPNQLRNMQRTFQAITG---- 56
Query: 86 FDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
L LK L +FE ++ L P +L +
Sbjct: 57 ----------------------------TFLDAFLKKHLSKDFESLVLMLYKPRAQLLCE 88
Query: 146 ELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ A G GTDE+ +V++L T+ + +R I ++Y
Sbjct: 89 LIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQ 125
Score = 74.6 bits (183), Expect = 2e-16
Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 45/156 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
E++R A KG GTDE+ ++DVL + +EI + L+
Sbjct: 86 LCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYND---------------- 129
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTP----------LPELYAKELH 148
L D ++ + G + A + E +
Sbjct: 130 ----------------SLGDVVRKDCGDKYMWAKLINAVATGDRIPRDTHELEEDLVLVR 173
Query: 149 DAMSGV---GTDEEAIVEILSTLSNYGIRTIAEVYE 181
A+ + + I +T + R + ++Y
Sbjct: 174 KAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYS 209
Score = 63.5 bits (154), Expect = 2e-12
Identities = 19/171 (11%), Positives = 47/171 (27%), Gaps = 38/171 (22%)
Query: 18 RCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGF---GTDEQSIIDVLAKRSNQQRQEIAD 74
+ + +P D + D ++R A++ + + I + A + +++
Sbjct: 147 KLINAVATGDRIPRDTHELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHK 206
Query: 75 AFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDA--- 131
+ + L ++ E G E A
Sbjct: 207 MYSAKYNG-------------------------------DSLRAGVEDEFQGLDEYAFKL 235
Query: 132 IVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
+ A ++ A +G G+D + I + + Y+
Sbjct: 236 AHDFLYDPCCAAAFSMNVAFAGSGSDSNRLNRITAMHFRE-CKGCKYYYKK 285
Score = 52.7 bits (126), Expect = 8e-09
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 39/140 (27%)
Query: 3 EQQYCRFD--SSLGSTYRCLFQQCLPTVVPA--DPFDPNGDAEVLRAAMKGFGTDEQSII 58
+Y + + ++ L + DP A + A G G+D +
Sbjct: 209 SAKYNGDSLRAGVEDEFQGLDEYAFKLAHDFLYDP--CCAAAFSMNVAFAGSGSDSNRLN 266
Query: 59 DVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLID 118
+ A + + +K ++G+ +
Sbjct: 267 RITAMHFREC-KGCKYYYKKVYGQ--------------------------------AFDE 293
Query: 119 DLKSELGGNFEDAIVALMTP 138
+EL G + DAI L P
Sbjct: 294 RCATELKGVYGDAIKLLWEP 313
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A
{Giardia intestinalis} PDB: 2iic_A
Length = 310
Score = 131 bits (330), Expect = 8e-38
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 33 PFDPNGD-AEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVT 91
P GD ++A ++ +E+ ++ ++ S ++R+E+ F+ G
Sbjct: 2 PLGSYGDAIPEVKAILEA--KNEEELVTFTSRWSAEERKELRTQFQDTTGL--------- 50
Query: 92 TKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSEL-GGNFEDAIVALMTPLPELYAKELHDA 150
+ I LK + G +ED + + A
Sbjct: 51 -----------------------EFIAFLKKCIKNGPYEDVMALGWDCNISARVNVIKKA 87
Query: 151 MSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
M D AI +++ + +A+ Y+
Sbjct: 88 MKN-VNDFRAIHDVVLIATPDERLKLAQAYKE 118
Score = 79.5 bits (196), Expect = 2e-18
Identities = 25/157 (15%), Positives = 49/157 (31%), Gaps = 42/157 (26%)
Query: 35 DPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKL 94
+ + V++ AMK D ++I DV+ + +R ++A A+K G
Sbjct: 76 NISARVNVIKKAMKN-VNDFRAIHDVVLIATPDERLKLAQAYKEKTGN------------ 122
Query: 95 LYHNVIRHLFQCSIHCLPHQDLIDDLKSELG--GNFEDAIVALMT------PLPELYAKE 146
DL+ D ++ + A+
Sbjct: 123 --------------------DLLQDFVDQIPLTSAASYLCHLAIRENRTPRGSVASDAEV 162
Query: 147 LHDAMSGV-GTDEEAIVEILSTLSNYGIRTIAEVYEN 182
L + D EA+V ++ T + + I +E
Sbjct: 163 LKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEV 199
Score = 74.5 bits (183), Expect = 2e-16
Identities = 19/174 (10%), Positives = 42/174 (24%), Gaps = 37/174 (21%)
Query: 14 GSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-FGTDEQSIIDVLAKRSNQQRQEI 72
++ DAEVL+ + D ++++ ++ + + +EI
Sbjct: 134 LTSAASYLCHLAIRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEI 193
Query: 73 ADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFED-- 130
F+ L GK + + +++
Sbjct: 194 NHRFEVLTGK--------------------------------SVQEAIETRYADKENARG 221
Query: 131 --AIVALMTPLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
A H A+ D T + + A V+
Sbjct: 222 LCIAHYYNLAPARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYA 275
Score = 44.1 bits (104), Expect = 9e-06
Identities = 7/66 (10%), Positives = 14/66 (21%), Gaps = 5/66 (7%)
Query: 36 PNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGK-----EESFDPAV 90
A +A++ D + A +G F
Sbjct: 233 ARAVAYAFHSAVETQNDDMAYEQAARITGLFHDLHKFAWVHYACWGVMRDDILSRFQSKE 292
Query: 91 TTKLLY 96
K+ +
Sbjct: 293 ANKVNF 298
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding
protein, membrane-binding protein, binding protein;
1.90A {Giardia intestinalis} PDB: 4evh_A
Length = 295
Score = 124 bits (312), Expect = 3e-35
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 36/148 (24%)
Query: 35 DPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKL 94
A L+ A+ DE I + ++ S + R++IA A+ +GK
Sbjct: 3 KVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGK------------ 48
Query: 95 LYHNVIRHLFQCSIHCLPHQDLIDDLKSEL-GGNFEDAIVALMTPLPELYAKELHDAMSG 153
+L DD+K L GG+ E ++ L + E+ A+ + DA+SG
Sbjct: 49 --------------------ELPDDIKKALKGGSEESLLMDLFSDRHEVRAQHIRDALSG 88
Query: 154 VGTDEEAIVEILSTLSNYGIRTIAEVYE 181
D A + + + Y
Sbjct: 89 -RNDHMAFFDTVILCTPEDWHETVAAYT 115
Score = 78.7 bits (194), Expect = 4e-18
Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 44/153 (28%)
Query: 39 DAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHN 98
A+ +R A+ G D + D + + + E A+ +F K
Sbjct: 78 RAQHIRDALSG-RNDHMAFFDTVILCTPEDWHETVAAYTRMFKK---------------- 120
Query: 99 VIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMT---------PLPELYAKELHD 149
L++D ++G + ++ PE A+ L
Sbjct: 121 ----------------PLVEDFMKDVGRKEDWCLLMEKWMAHERVSRPGSPEDEAQRLDQ 164
Query: 150 AMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
A + +++ T+ + R IAE ++
Sbjct: 165 AFD--QKNTAYLIDFFGTVPSAEYRPIAEAFKA 195
Score = 67.5 bits (165), Expect = 5e-14
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 37/133 (27%)
Query: 32 DPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVT 91
P P +A+ L A + +ID + + + IA+AFK GK
Sbjct: 151 RPGSPEDEAQRLDQAFDQ--KNTAYLIDFFGTVPSAEYRPIAEAFKAQNGK--------- 199
Query: 92 TKLLYHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDA---IVALMTPLPELYAKELH 148
+ + + + + L A ++
Sbjct: 200 -----------------------SIEQAIATIYTKTDYYTFYCAHFALLGMHRLAAYLIN 236
Query: 149 DAMSGVGTDEEAI 161
A + G ++
Sbjct: 237 CACNDKGDEKRMR 249
Score = 42.9 bits (101), Expect = 2e-05
Identities = 14/45 (31%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 138 PLPELYAKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYEN 182
P A EL A+ DE I I S S IA+ Y
Sbjct: 2 PKVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVA 44
Score = 34.0 bits (78), Expect = 0.017
Identities = 9/100 (9%), Positives = 21/100 (21%), Gaps = 36/100 (36%)
Query: 36 PNGDAEVLRAAMKGFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLL 95
A ++ A G ++ + + D + K
Sbjct: 228 HRLAAYLINCACNDKGDEK-RMRRITGMMV---------------------DKCLGAKHA 265
Query: 96 YHNVIRHLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVAL 135
Y + D+ D++ + L
Sbjct: 266 YKI--------------YGDMGTDIERCFDKRMAPILRTL 291
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Length = 437
Score = 38.7 bits (89), Expect = 5e-04
Identities = 19/83 (22%), Positives = 30/83 (36%)
Query: 6 YCRFDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKRS 65
+ LG T L ++ + PF G L+A +G + V A
Sbjct: 232 FILAQPFLGETTGALERRGAKRIAAPFPFGEEGTTLWLKAVADAYGVSAEKFEAVTAAPR 291
Query: 66 NQQRQEIADAFKTLFGKEESFDP 88
+ ++ IA +TL GK P
Sbjct: 292 ARAKKAIAAHLETLTGKSLFMFP 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 7e-04
Identities = 25/199 (12%), Positives = 58/199 (29%), Gaps = 55/199 (27%)
Query: 1 MGEQQYCRFDSSLGSTYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMK--------GFGT 52
GE QY Y+ + V D FD ++ ++ +
Sbjct: 11 TGEHQYQ---------YKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 53 DEQS---IIDVL-AKRSNQQRQEIADAFKTLFG------KEESFDPAVTTKLL--YHNVI 100
+ L +K+ ++ + + + + K E P++ T++ + +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 101 R---HLFQCSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAKELHDAMSGVG-T 156
+F + + + L+ AL+ P + + G G T
Sbjct: 120 YNDNQVF--AKYNVSRLQPYLKLRQ-----------ALLELRPAKNVL-ID-GVLGSGKT 164
Query: 157 DEEAIVEILSTLSNYGIRT 175
L +Y ++
Sbjct: 165 -----WVALDVCLSYKVQC 178
Score = 33.7 bits (76), Expect = 0.034
Identities = 38/203 (18%), Positives = 70/203 (34%), Gaps = 49/203 (24%)
Query: 9 FDSSLG----STYRCLFQQCLPTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAKR 64
+SSL + YR +F + +V P P ++ + +D +++ L K
Sbjct: 359 IESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIK--SDVMVVVNKLHKY 414
Query: 65 S--NQQRQE----IADAFKTLFGKEESFDPAVTTKLLYH-NVIRHLFQCSIHCLPHQDLI 117
S +Q +E I + L K E+ + A+ ++ H N+ + S +P +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLEN-EYALHRSIVDHYNIPKTF--DSDDLIP--PYL 469
Query: 118 DD---------LKS-ELGGNFEDAIVALMTPLPELY-------AKELHDAMSGVGTDEEA 160
D LK+ E ++ K HD+ + + +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTL--------FRMVFLDFRFLEQKIRHDSTAWNASG--S 519
Query: 161 IVEILSTLSNYG--IRTIAEVYE 181
I+ L L Y I YE
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYE 542
Score = 30.6 bits (68), Expect = 0.32
Identities = 27/167 (16%), Positives = 48/167 (28%), Gaps = 51/167 (30%)
Query: 2 GEQQYCRF-DSSLGSTYRCLF--------QQCLPTVVPADPFDP-NGDAEV--------- 42
E+ +F + L Y+ L Q + T + + D D +V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 43 -----LRAA--------------MKGFGTDEQSIIDVLAKRS-NQQRQEIADAFKTL--- 79
LR A + G G ++ +A + + FK
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSG---KT---WVALDVCLSYKVQCKMDFKIFWLN 188
Query: 80 FGKEESFDPAVTTKL--LYHNVIRHLFQCSIHCLPHQDLIDDLKSEL 124
S V L L + + + S H + I +++EL
Sbjct: 189 LKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 27/212 (12%), Positives = 62/212 (29%), Gaps = 81/212 (38%)
Query: 18 RCLFQQCLPTVVPADPFDPNGDAEVLRAAMKG-------FG--------TDE-------- 54
+ ++ PFD ++ + RA +G FG +E
Sbjct: 124 KNYITAR---IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 55 QSIIDVLAKRSNQQRQEIADA---FKTLFGKEESFD-----------P--------AVTT 92
++ L K S + E+ + +F + + P ++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 93 KLLYHNVIRHLFQ-------CSIHCLPHQDLIDDLKSELGGNFEDAIVALMTPLPELYAK 145
L+ + Q + +L LK G+ + + A+
Sbjct: 239 PLIG------VIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAV---------- 281
Query: 146 ELHDAMSGVGTDE---EAIVEILSTLSNYGIR 174
A++ + E ++ + ++ L G+R
Sbjct: 282 ----AIAETDSWESFFVSVRKAITVLFFIGVR 309
Score = 32.3 bits (73), Expect = 0.093
Identities = 30/198 (15%), Positives = 52/198 (26%), Gaps = 58/198 (29%)
Query: 2 GEQQYCRFDSSLGSTYRCLFQQCLPTVVP----------ADPFDPNGDA---EVLRAAMK 48
Q +F+ L PT + +P+ +VL +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 49 GFGTDEQSIIDVLAKRSNQQRQEIADAFKTLFGKEESFDPAVTTKLLYHNVIRHLFQCSI 108
F E + N +I L + + TT + +I++ +
Sbjct: 90 EF---ENCYL-----EGN----DIHALAAKLLQEND------TTLVKTKELIKNYIT-AR 130
Query: 109 HCL------PHQD-LIDDLKSE-------LGG--NFEDAIVALMTPLPELYAKELHDAMS 152
L + GG N +D EL ++L+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD-------YFEEL--RDLYQTYH 181
Query: 153 G-VGTDEEAIVEILSTLS 169
VG + E LS L
Sbjct: 182 VLVGDLIKFSAETLSELI 199
Score = 26.6 bits (58), Expect = 6.5
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 17/49 (34%)
Query: 141 ELY-----AKELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYENSK 184
+LY A+++ + D YG + V N
Sbjct: 1634 DLYKTSKAAQDVWNRA-----DN-------HFKDTYGFSILDIVINNPV 1670
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha
sandwich, structural genomics, PSI-2, protein structure
initiative; 2.60A {Bacteroides thetaiotaomicron}
Length = 217
Score = 27.0 bits (60), Expect = 3.4
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 26 PTVVPADPFDPNGDAEVLRAAMKGFGTDEQSIIDVLAK 63
V+ + P EV+R +K + D ++ V+ +
Sbjct: 172 EGVMKKEIVSPAYQGEVIRHDVKKYVADTDYVVKVIER 209
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 27.1 bits (60), Expect = 3.5
Identities = 2/23 (8%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 27 TVVPADPFDPNGDAEVLRAAMKG 49
T+ + + ++ +G
Sbjct: 54 TLFQGPLLN---NVPLMDTLFEG 73
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 27.3 bits (60), Expect = 4.0
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 145 KELHDAMSGVGTDEEAIVEILSTLSNYGIRTIAEVYENSK 184
E++D + D + I +I+ +++ GI +V E +
Sbjct: 25 AEVNDHLPEDIVDSDQIEDIIQMINDMGI----QVMEEAP 60
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural
genomics, center for structural GEN infectious diseases;
HET: FFT; 2.46A {Campylobacter jejuni}
Length = 225
Score = 25.9 bits (58), Expect = 7.7
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 69 RQEIADAFKTLFGKEESFDPAVTTKLLY 96
R EI A K + K+ + T+ L
Sbjct: 137 RDEIIRAAKRVIEKKLELNEENLTQNLD 164
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 25.9 bits (57), Expect = 8.0
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 34 FDPNGD----AEVLRAAMKGFGTDEQSIIDVLAK 63
D +GD + L+ MK F +++ K
Sbjct: 137 LDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEK 170
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2;
solute-binding protein; 1.45A {Streptomyces
clavuligerus} PDB: 2wok_A 2wop_A*
Length = 562
Score = 25.8 bits (57), Expect = 9.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 84 ESFDPAVTTKLLYHNVIRHLFQ 105
+S DPA T + + R L +
Sbjct: 44 DSLDPARTYYVWVWLLQRLLNR 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.395
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,909,861
Number of extensions: 174537
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 121
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)