BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3632
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+GGL K+ I + V PE+ E LG KG++LYGPPGTGKTL+AR + +
Sbjct: 150 VGGLTKQIKEI-KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208
Query: 81 REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+ + V+G +++ KY+GE VR LF A E
Sbjct: 209 KFIR-VSGAELVQKYIGEGSRMVRELFVMARE 239
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79
GIGGL ++ + R + PE+ +++G + KG+LLYGPPGTGKTL+A+ + +
Sbjct: 182 GIGGLTEQIREL-REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240
Query: 80 AREPKIVNGPQ--VLDKYVGESEANVRRLFADAEEEE 114
A + P ++DKY+GES +R +FA A+E E
Sbjct: 241 A---NFIFSPASGIVDKYIGESARIIREMFAYAKEHE 274
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16 FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
N++G IGG K+ I + + P + + +G + +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73 QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+ A ++NGP+++ K GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
P+ + G KG+L YGPPG GKTL+A+ I A I GP++L + GESEAN
Sbjct: 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPELLTMWFGESEAN 558
Query: 103 VRRLFADAEE 112
VR +F A +
Sbjct: 559 VREIFDKARQ 568
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16 FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
N++G IGG K+ I + + P + + +G + +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73 QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+ A ++NGP+++ K GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16 FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
N++G IGG K+ I + + P + + +G + +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73 QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+ A ++NGP+++ K GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16 FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
N++G IGG K+ I + + P + + +G + +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73 QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+ A ++NGP+++ K GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
P + + +G + +GILLYGPPGTGKTL+AR + A ++NGP+++ K GESE+N
Sbjct: 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESN 285
Query: 103 VRRLFADAEE 112
+R+ F +AE+
Sbjct: 286 LRKAFEEAEK 295
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
P+ + G KG+L YGPPG GKTL+A+ I A I GP++L + GESEAN
Sbjct: 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPELLTMWFGESEAN 558
Query: 103 VRRLFADAEE 112
VR +F A +
Sbjct: 559 VREIFDKARQ 568
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
IGGL+K+ I R + PE+ E++G + KGILLYGPPGTGKTL+A+ + NA
Sbjct: 19 IGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77
Query: 81 REPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
++V G +++ K++GE + V+ +F A+E+
Sbjct: 78 TFIRVV-GSELVKKFIGEGASLVKDIFKLAKEK 109
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
P + + +G + +GILLYGPPGTGKTL+AR + A ++NGP+++ K GESE+N
Sbjct: 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESN 285
Query: 103 VRRLFADAEE 112
+R+ F +AE+
Sbjct: 286 LRKAFEEAEK 295
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQI 74
D +GG + + R + PE LG KGILLYGPPGTGKTL AR +
Sbjct: 205 DVTYSDVGGCKDQIEKL-REVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 75 GQMLNAREPKIVNGPQVLDKYVGESEANVRRLF 107
+A +++ G +++ KYVGE VR LF
Sbjct: 264 ANRTDATFIRVI-GSELVQKYVGEGARMVRELF 295
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+GGLDK+ + A + + + +G + KG L+YGPPGTGKTL+AR NA
Sbjct: 183 VGGLDKQIEELVE-AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241
Query: 81 REPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
K+ PQ++ Y+GE VR FA A+E+
Sbjct: 242 TFLKLA-APQLVQMYIGEGAKLVRDAFALAKEK 273
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQI 74
D +GGLD + I R A + ++ EQ+G +G+LLYGPPGTGKT++ + +
Sbjct: 168 DVTYADVGGLDMQKQEI-REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 75 GQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
A + VNG + + KY+GE VR +F A E
Sbjct: 227 ANSTKAAFIR-VNGSEFVHKYLGEGPRMVRDVFRLARE 263
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
P+ + G KG+L YGPPG GKTL+A+ I A I GP++L + GESEAN
Sbjct: 38 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPELLTMWFGESEAN 96
Query: 103 VRRLFADAEE 112
VR +F A +
Sbjct: 97 VREIFDKARQ 106
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLM 70
SP+ ++ IGGL+ + I + + + PE+ E++G + KG++LYG PGTGKTL+
Sbjct: 176 SPTESYSD--IGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 71 ARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
A+ + +A +IV G +++ KY+G+ R++F A E
Sbjct: 233 AKAVANQTSATFLRIV-GSELIQKYLGDGPRLCRQIFKVAGE 273
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 35 AFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQ 90
A + V P+ + LG G+LL GPPG GKTL+A+ + A E + V GP+
Sbjct: 25 AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV-----ANESGLNFISVKGPE 79
Query: 91 VLDKYVGESEANVRRLFADAE 111
+L+ YVGESE VR++F A+
Sbjct: 80 LLNMYVGESERAVRQVFQRAK 100
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 22 GGLDKEFTAIF-----RRAFASRVFPPEVVEQL--GCQH-VKGILLYGPPGTGKTLMARQ 73
GG E+T I ++A V P V +L G + KG+LL+GPPG GKTL+AR
Sbjct: 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73
Query: 74 IGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
+ +A I + + KYVG+ E VR LFA A
Sbjct: 74 VATECSATFLNI-SAASLTSKYVGDGEKLVRALFAVA 109
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEA 101
P ++G + KGILL GPPGTGKTL+AR + N P ++G ++ +VG A
Sbjct: 38 PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVELFVGVGAA 95
Query: 102 NVRRLFADAE 111
VR LFA A+
Sbjct: 96 RVRDLFAQAK 105
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
+G+LL+GPPG GKT++A+ + NA I + + KYVGE E VR LFA A E
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI-SAASLTSKYVGEGEKLVRALFAVARE 205
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
GILLYGPPGTGK+ +A+ + N+ V+ ++ K++GESE V++LFA A E
Sbjct: 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 109
Query: 114 EKRV 117
+ +
Sbjct: 110 KPSI 113
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
GILLYGPPGTGK+ +A+ + N+ V+ ++ K++GESE V++LFA A E
Sbjct: 60 TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 118
Query: 114 EKRV 117
+ +
Sbjct: 119 KPSI 122
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
GILLYGPPGTGK+ +A+ + N+ V+ ++ K++GESE V++LFA A E
Sbjct: 69 TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 127
Query: 114 EKRV 117
+ +
Sbjct: 128 KPSI 131
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
GILLYGPPGTGK+ +A+ + N+ V+ ++ K++GESE V++LFA A E
Sbjct: 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 142
Query: 114 EKRV 117
+ +
Sbjct: 143 KPSI 146
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
+GILL+GPPGTGK+ +A+ + N ++ ++ K++GESE V+ LF A E +
Sbjct: 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 115 KRV 117
+
Sbjct: 106 PSI 108
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
+GILL+GPPGTGK+ +A+ + N ++ ++ K++GESE V+ LF A E +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 115 KRV 117
+
Sbjct: 228 PSI 230
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
KGILL+GPPGTGKTL+ + I A I + + K+VGE E VR LFA A ++
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSI-SASSLTSKWVGEGEKMVRALFAVARCQQ 176
Query: 115 KRV 117
V
Sbjct: 177 PAV 179
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEA 101
P ++G + KGILL GPPGTG TL+AR + N P ++G ++ +VG A
Sbjct: 38 PSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANV--PFFHISGSDFVELFVGVGAA 95
Query: 102 NVRRLFADAE 111
VR LFA A+
Sbjct: 96 RVRDLFAQAK 105
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
P ++LG + KG+L+ GPPGTGKTL+A+ I A E K+ ++G ++ +VG
Sbjct: 34 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI-----AGEAKVPFFTISGSDFVEMFVGV 88
Query: 99 SEANVRRLFADAEE 112
+ VR +F A++
Sbjct: 89 GASRVRDMFEQAKK 102
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
PE LG + KG+LL GPPGTGKTL+A+ + A E + + G ++ +VG
Sbjct: 33 PERYANLGAKIPKGVLLVGPPGTGKTLLAKAV-----AGEAHVPFFSMGGSSFIEMFVGL 87
Query: 99 SEANVRRLFADAEEE 113
+ VR LF A+++
Sbjct: 88 GASRVRDLFETAKKQ 102
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
P ++G + KG+LL GPPG GKT +AR + AR P I +G ++ +VG A
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 102 NVRRLFADAE 111
VR LF A+
Sbjct: 120 RVRDLFETAK 129
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
P ++G + KG+LL GPPG GKT +AR + AR P I +G ++ +VG A
Sbjct: 62 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 102 NVRRLFADAE 111
VR LF A+
Sbjct: 120 RVRDLFETAK 129
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
P ++G + KG+LL GPPG GKT +AR + AR P I +G ++ +VG A
Sbjct: 53 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 110
Query: 102 NVRRLFADAE 111
VR LF A+
Sbjct: 111 RVRDLFETAK 120
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
P ++G + KG+LL GPPG GKT +AR + AR P I +G ++ +VG A
Sbjct: 38 PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 95
Query: 102 NVRRLFADAE 111
VR LF A+
Sbjct: 96 RVRDLFETAK 105
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 34 RAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVL 92
R F + PE QLG + KG LL GPPG GKTL+A+ + A+ P + + G + +
Sbjct: 19 REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFV 76
Query: 93 DKYVGESEANVRRLFADA 110
+ G A VR LF +A
Sbjct: 77 EVIGGLGAARVRSLFKEA 94
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHV----------------KGILLYGPPG 64
+ L +F+ + A+R+ P + + +G QH+ ++L+GPPG
Sbjct: 1 MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPG 60
Query: 65 TGKTLMARQIGQMLNAREPKI 85
TGKT +A I + NA +I
Sbjct: 61 TGKTTLAEVIARYANADVERI 81
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREP 83
+ +LL GPPGTGKT +A I Q L ++ P
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVP 92
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREP 83
+ +LL GPPGTGKT +A I Q L ++ P
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVP 106
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R DA
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDA 106
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R DA
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDA 105
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R DA
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDA 112
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R D+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R D+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK--YVGESEANV 103
ILL GP G+GKTL+A + ++L+ P + L + YVGE N+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDV--PFTMADATTLTEAGYVGEDVENI 100
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK--YVGESEANV 103
ILL GP G+GKTL+A + ++L+ P + L + YVGE N+
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDV--PFTMADATTLTEAGYVGEDVENI 100
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK--YVGESEANV 103
ILL GP G+GKTLMA+ + + L+ P ++ L + YVGE N+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDATSLTEAGYVGEDVENI 121
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91
+LL+GPPG GKT +A I L ++ +GP +
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV-NLRVTSGPAI 74
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
+LL+GPPG GKT +A I L ++ +GP + E ++ + A++ EE
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGV-NLRVTSGPAI------EKPGDLAAILANSLEE 90
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
+LL+GPPG GKT +A I L ++ +GP + E ++ + A++ EE
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNL-RVTSGPAI------EKPGDLAAILANSLEE 90
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIG-QMLNAREPKIVNGPQVL-----DKYVGE 98
V+E L + +L G PG GKT +A + Q++N P+I+ +V+ KY GE
Sbjct: 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251
Query: 99 SEANVRRLF 107
E ++++
Sbjct: 252 FEDRLKKVM 260
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
K IL GP G GKT +AR++ ++ NA K+ YVG+ ++ R D+
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDS 106
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIG-QMLNAREPKIVNGPQVL-----DKYVGE 98
V+E L + +L G PG GKT +A + Q++N P+I+ +V+ KY GE
Sbjct: 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGE 251
Query: 99 SEANVRRLF 107
E ++++
Sbjct: 252 FEDRLKKVM 260
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEA----NVRRLFADA 110
+LL GPP +GKT +A +I + N KI + DK +G SE ++++F DA
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP----DKMIGFSETAKCQAMKKIFDDA 119
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate
Kinase I (Arok)
Length = 173
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLN 79
+ I L GP G GK+ + RQ+ Q LN
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEA----NVRRLFADAE 111
+LL GPP +GKT +A +I + N KI + DK +G SE ++++F DA
Sbjct: 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSP----DKMIGFSETAKCQAMKKIFDDAY 121
Query: 112 EEE 114
+ +
Sbjct: 122 KSQ 124
>pdb|3QB2|A Chain A, The Crystal Structure Of Immunity Factor For Spn (Ifs)
pdb|3QB2|B Chain B, The Crystal Structure Of Immunity Factor For Spn (Ifs)
pdb|3QB2|C Chain C, The Crystal Structure Of Immunity Factor For Spn (Ifs)
pdb|3QB2|D Chain D, The Crystal Structure Of Immunity Factor For Spn (Ifs)
Length = 187
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ--HVKGIL---------LYGPP 63
D K IG DKE+ R ++ + PEV+ + G +KG L
Sbjct: 23 DLKKYLIGS-DKEYRITRRDSYXGDISDPEVILEYGVYPAFIKGYTQLKANIEEALLEXS 81
Query: 64 GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESE--ANVRRLFADAEEEEKRVSHK 120
+G+ L Q Q LNA E ++N + L Y+ AN+ + DA E +K
Sbjct: 82 NSGQALDIYQAVQTLNA-ENXLLNYYESLPFYLNRQSILANITKALKDAHIREAXAHYK 139
>pdb|3PNT|B Chain B, Crystal Structure Of The Streptococcus Pyogenes Nad+
Glycohydrolase Spn In Complex With Ifs, The Immunity
Factor For Spn
pdb|3PNT|D Chain D, Crystal Structure Of The Streptococcus Pyogenes Nad+
Glycohydrolase Spn In Complex With Ifs, The Immunity
Factor For Spn
Length = 161
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 15/119 (12%)
Query: 15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ--HVKGIL---------LYGPP 63
D K IG DKE+ R ++ + PEV+ + G +KG L
Sbjct: 23 DLKKYLIGS-DKEYRITRRDSYXGDISDPEVILEYGVYPAFIKGYTQLKANIEEALLEXS 81
Query: 64 GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESE--ANVRRLFADAEEEEKRVSHK 120
+G+ L Q Q LNA E ++N + L Y+ AN+ + DA E +K
Sbjct: 82 NSGQALDIYQAVQTLNA-ENXLLNYYESLPFYLNRQSILANITKALKDAHIREAXAHYK 139
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 55 KGILLYGPPGTGKTLMARQIGQML 78
+ +LYGPPG GKT A + Q L
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQEL 101
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 56 GILLYGPPGTGKTLMARQIGQMLN 79
IL+ G PGTGKT MA I L+
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELD 35
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEA 101
+ +L+ G PGTGKT +A + Q L P + G ++ + ++EA
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 55 KGILLYGPPGTGKTLM 70
+GI+L GPPG+GKT++
Sbjct: 1268 RGIILCGPPGSGKTMI 1283
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 55 KGILLYGPPGTGKTLM 70
+GI+L GPPG+GKT++
Sbjct: 1049 RGIILCGPPGSGKTMI 1064
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 4/22 (18%)
Query: 57 ILLYGPPGTGKT----LMARQI 74
+L YGPPGTGKT +AR+I
Sbjct: 49 LLFYGPPGTGKTSTIVALAREI 70
>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation.
pdb|2GAA|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae:
A Putative P-Loop Containing Kinase With A Circular
Permutation
Length = 359
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
++L G PG+GK+ +A ++ Q++N +
Sbjct: 27 VILVGSPGSGKSTIAEELXQIINEK 51
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEA 101
+ +L+ G PGTGKT +A Q L P + G ++ ++EA
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEA 133
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 39 RVFPPEVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88
R+ V++L + +KG + L GPPG GKT +A+ I + L + +I G
Sbjct: 92 RILEYLAVQKL-TKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG GKT +A I L + +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG GKT +A I L + +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG GKT +A I L + +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG GKT +A I L + +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG GKT +A I L + +GP
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQT-NIHVTSGP 85
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 47 EQLGCQHVKGILLYGPPGTGKT 68
+ L ++ +L YGPPGTGKT
Sbjct: 51 KTLKSANLPHMLFYGPPGTGKT 72
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In
Complex With Dna
Length = 387
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNAR 81
LLYG GTGKT +AR + + L AR
Sbjct: 48 LLYGLTGTGKTAVARLVLRRLEAR 71
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The
T4 Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To
Closed Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 57 ILLYGP-PGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYV 96
I+L+ P PGTGKT +A+ + +NA + VNG +V
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNA-DMMFVNGSDCKIDFV 89
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 31 IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP------GTGKTLMARQIGQM 77
+ R+ + P++ +Q G Q+++ ++ YG P G+ L QI M
Sbjct: 53 VLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLM 105
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 31 IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP------GTGKTLMARQIGQM 77
+ R+ + P++ +Q G Q+++ ++ YG P G+ L QI M
Sbjct: 53 VLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLM 105
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 31 IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP------GTGKTLMARQIGQM 77
+ R+ + P++ +Q G Q+++ ++ YG P G+ L QI M
Sbjct: 53 VLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGSSGELSKEQITLM 105
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 58 LLYGPPGTGKTLMARQIGQ-MLNAREPKIVNGPQVL----------DKYVGESEANVRRL 106
+L G PG GKT + + Q ++N P+ + G +VL KY GE E ++ +
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 107 FADAEEEEKRV 117
D ++E V
Sbjct: 107 LNDLAKQEGNV 117
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78
EV++ Q + +LL G PGTGK+++ + + ++L
Sbjct: 51 EVIKTAANQK-RHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc
Ion And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 58 LLYGPPGTGKTLMARQIGQ 76
L+YGP +GKT MA QI Q
Sbjct: 5 LIYGPTCSGKTDMAIQIAQ 23
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91
+++ GP G+GKT + R I +L +NG +V
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEV 67
>pdb|2WJV|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJV|B Chain B, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2
pdb|2WJY|A Chain A, Crystal Structure Of The Complex Between Human Nonsense
Mediated Decay Factors Upf1 And Upf2 Orthorhombic Form
Length = 800
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNARE---PKIVNGPQ-----VLDKYVGESEANVRRLFAD 109
L+ GPPGTGKT+ + I L AR+ P +V P L + + ++ V RL A
Sbjct: 375 LIQGPPGTGKTVTSATIVYHL-ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 433
Query: 110 AEE 112
+ E
Sbjct: 434 SRE 436
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 59 LYGPPGTGKTLMARQIGQMLNAREPKI 85
L GPPG GK+ G+ML R K+
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKL 105
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89
+LL GPPG G+T +A I L + +GP
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQT-NIHVTSGP 85
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG 97
G+L+YGP G + +++ E ++ G Q+ D++ G
Sbjct: 88 GVLVYGPKGGSAFVSETMEAANIHSLEHELFEGKQLTDRWAG 129
>pdb|2GJK|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK6|B Chain B, Structural And Functional Insights Into The Human Upf1
Helicase Core
pdb|2GK7|A Chain A, Structural And Functional Insights Into The Human Upf1
Helicase Core
Length = 624
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNARE---PKIVNGPQ-----VLDKYVGESEANVRRLFAD 109
L+ GPPGTGKT+ + I L AR+ P +V P L + + ++ V RL A
Sbjct: 199 LIQGPPGTGKTVTSATIVYHL-ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257
Query: 110 AEE 112
+ E
Sbjct: 258 SRE 260
>pdb|2XZO|A Chain A, Upf1 Helicase - Rna Complex
pdb|2XZP|A Chain A, Upf1 Helicase
Length = 623
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNARE---PKIVNGPQ-----VLDKYVGESEANVRRLFAD 109
L+ GPPGTGKT+ + I L AR+ P +V P L + + ++ V RL A
Sbjct: 198 LIQGPPGTGKTVTSATIVYHL-ARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 256
Query: 110 AEE 112
+ E
Sbjct: 257 SRE 259
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 55 KGILLYGPPGTGKTLMARQI 74
+ + L GPPG K+L+AR++
Sbjct: 42 ESVFLLGPPGIAKSLIARRL 61
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQML 78
+++ +L GPPGTGKT A + + L
Sbjct: 36 KNIPHLLFSGPPGTGKTATAIALARDL 62
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIG 75
+ V +LL G PG GK+ +AR G
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFG 28
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIG 75
+ V +LL G PG GK+ +AR G
Sbjct: 5 ESVYKVLLLGAPGVGKSALARIFG 28
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQML 78
+++ +L GPPGTGKT A + + L
Sbjct: 36 KNIPHLLFSGPPGTGKTATAIALARDL 62
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
E +E LG + I +YG GTGKT + + G R +++
Sbjct: 27 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
+L G PG+GK+ + R++ + L +++ +++ G S A++ D E+E +R+
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGV---GLLDTDVAIEQRTGRSIADI--FATDGEQEFRRI 60
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 58 LLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
+L G PG+GK+ + R++ + L +++ +++ G S A++ D E+E +R+
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGV---GLLDTDVAIEQRTGRSIADI--FATDGEQEFRRI 60
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
E +E LG + I +YG GTGKT + + G R +++
Sbjct: 27 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 43 PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
E +E LG + I +YG GTGKT + + G R +++
Sbjct: 26 KEALENLGSLY-NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 68
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 58 LLYGPPGTGKTLMARQI 74
L+ GPPGTGKT+ + I
Sbjct: 379 LIQGPPGTGKTVTSATI 395
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
I++ G PG GKT + ++I + L R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKR 27
>pdb|2QGZ|A Chain A, Crystal Structure Of A Putative Primosome Component From
Streptococcus Pyogenes Serotype M3. Northeast Structural
Genomics Target Dr58
Length = 308
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82
+ VEQ KG+ LYG G GK+ + + L+ ++
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK 180
>pdb|2DR3|A Chain A, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|B Chain B, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|C Chain C, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|D Chain D, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|E Chain E, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
pdb|2DR3|F Chain F, Crystal Structure Of Reca Superfamily Atpase Ph0284 From
Pyrococcus Horikoshii Ot3
Length = 247
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 57 ILLYGPPGTGKTLMARQ-IGQMLNAREPKI 85
+LL G PGTGKT+ ++Q + L EP I
Sbjct: 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGI 55
>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
Length = 540
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81
+H K +LL PG GKT+ +G L +
Sbjct: 24 KHGKTLLLNAKPGLGKTVFVEVLGMQLKKK 53
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 58 LLYGPPGTGKTLMARQI 74
+++GPPGTGKT +I
Sbjct: 209 IIHGPPGTGKTTTVVEI 225
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 58 LLYGPPGTGKTLMARQI 74
+++GPPGTGKT +I
Sbjct: 209 IIHGPPGTGKTTTVVEI 225
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88
+LL GPPG GK A ++ + L P+I G
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGI--PQISTG 32
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNA 80
+ L GPPG GKT + + ++L +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKS 27
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Adenylate Kinase Complexed With Two Molecules Of Adp
And Mg
Length = 201
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88
+LL GPPG GK A ++ + L P+I G
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGI--PQISTG 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,616,936
Number of Sequences: 62578
Number of extensions: 136372
Number of successful extensions: 595
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 124
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)