Query psy3632
Match_columns 121
No_of_seqs 185 out of 1102
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 21:41:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.3E-30 2.9E-35 188.6 7.4 105 9-117 143-247 (406)
2 KOG0730|consensus 99.9 1.5E-26 3.2E-31 177.4 8.0 104 10-117 427-530 (693)
3 KOG0727|consensus 99.9 4.2E-26 9.2E-31 160.0 7.0 104 10-117 148-251 (408)
4 KOG0733|consensus 99.9 7.4E-26 1.6E-30 172.7 7.7 104 10-117 504-607 (802)
5 KOG0726|consensus 99.9 3.2E-25 7E-30 157.9 6.4 102 12-117 180-281 (440)
6 KOG0741|consensus 99.9 1.5E-24 3.1E-29 163.8 10.1 114 6-119 208-321 (744)
7 KOG0733|consensus 99.9 6.2E-25 1.3E-29 167.7 7.1 100 13-117 186-285 (802)
8 KOG0736|consensus 99.9 2.4E-24 5.3E-29 167.5 7.4 102 8-116 665-766 (953)
9 KOG0728|consensus 99.9 2.2E-23 4.8E-28 146.2 6.7 95 21-117 149-243 (404)
10 KOG0729|consensus 99.9 3.5E-22 7.7E-27 141.3 7.9 100 10-113 170-269 (435)
11 KOG0739|consensus 99.9 3E-22 6.4E-27 143.1 6.6 106 7-117 123-228 (439)
12 KOG0652|consensus 99.9 6.3E-22 1.4E-26 139.6 7.0 104 10-117 164-267 (424)
13 PTZ00454 26S protease regulato 99.8 4E-21 8.7E-26 143.5 7.6 103 10-116 138-240 (398)
14 KOG0731|consensus 99.8 3.8E-21 8.3E-26 150.8 7.1 100 13-117 307-406 (774)
15 KOG0738|consensus 99.8 6.9E-21 1.5E-25 139.6 7.6 102 11-117 206-307 (491)
16 COG0464 SpoVK ATPases of the A 99.8 1.7E-20 3.8E-25 143.5 7.6 104 10-117 235-338 (494)
17 KOG0737|consensus 99.8 3.7E-20 8E-25 134.8 7.4 103 13-117 86-189 (386)
18 PTZ00361 26 proteosome regulat 99.8 5.3E-20 1.1E-24 138.7 8.3 102 11-116 177-278 (438)
19 PRK03992 proteasome-activating 99.8 6.1E-20 1.3E-24 137.1 7.5 102 11-116 125-226 (389)
20 KOG0734|consensus 99.8 8E-20 1.7E-24 138.5 7.0 100 13-117 300-399 (752)
21 TIGR01243 CDC48 AAA family ATP 99.8 1.7E-19 3.7E-24 143.5 8.1 102 12-117 448-549 (733)
22 TIGR03689 pup_AAA proteasome A 99.8 3E-19 6.4E-24 136.6 8.9 101 11-114 176-285 (512)
23 KOG0651|consensus 99.8 3.4E-19 7.3E-24 127.7 6.6 99 14-116 129-227 (388)
24 TIGR01242 26Sp45 26S proteasom 99.8 1.7E-18 3.7E-23 128.2 8.2 102 11-116 116-217 (364)
25 COG1223 Predicted ATPase (AAA+ 99.8 7.7E-19 1.7E-23 123.7 5.5 98 12-117 116-213 (368)
26 KOG0735|consensus 99.8 2.3E-18 5.1E-23 133.8 7.5 98 14-115 664-761 (952)
27 KOG0740|consensus 99.7 2.1E-18 4.6E-23 128.6 5.8 99 16-117 150-248 (428)
28 CHL00195 ycf46 Ycf46; Provisio 99.7 6.5E-18 1.4E-22 129.0 8.3 102 8-116 219-320 (489)
29 TIGR01243 CDC48 AAA family ATP 99.7 1.2E-17 2.5E-22 133.1 7.8 101 12-116 173-273 (733)
30 KOG0732|consensus 99.7 1E-17 2.2E-22 134.9 6.6 104 12-118 260-367 (1080)
31 TIGR01241 FtsH_fam ATP-depende 99.7 1.4E-17 3E-22 127.7 7.1 100 12-116 50-149 (495)
32 COG0465 HflB ATP-dependent Zn 99.7 3.5E-17 7.6E-22 126.4 5.8 99 14-117 147-245 (596)
33 KOG0730|consensus 99.7 4.3E-17 9.2E-22 125.8 5.6 95 20-116 185-280 (693)
34 PLN00020 ribulose bisphosphate 99.6 3.4E-16 7.3E-21 115.3 6.2 65 49-114 143-207 (413)
35 CHL00176 ftsH cell division pr 99.6 5.1E-16 1.1E-20 121.8 7.3 100 12-116 178-277 (638)
36 TIGR02881 spore_V_K stage V sp 99.4 2.1E-13 4.5E-18 97.1 6.7 90 20-111 7-105 (261)
37 TIGR02880 cbbX_cfxQ probable R 99.4 2.6E-13 5.6E-18 97.8 6.3 90 20-111 23-121 (284)
38 CHL00181 cbbX CbbX; Provisiona 99.4 4.1E-13 8.9E-18 96.9 7.2 90 20-111 24-122 (287)
39 CHL00206 ycf2 Ycf2; Provisiona 99.4 1.6E-13 3.4E-18 115.9 5.2 54 41-95 1617-1670(2281)
40 PRK10733 hflB ATP-dependent me 99.4 5.5E-13 1.2E-17 105.2 6.9 95 20-117 153-247 (644)
41 PF00004 AAA: ATPase family as 99.4 7.2E-13 1.6E-17 84.3 4.3 57 57-114 1-57 (132)
42 KOG0744|consensus 99.3 1.9E-12 4.2E-17 93.9 4.9 62 54-115 177-246 (423)
43 KOG0743|consensus 99.3 6.5E-12 1.4E-16 94.1 5.7 67 14-83 198-264 (457)
44 TIGR00390 hslU ATP-dependent p 99.2 2.5E-11 5.4E-16 91.1 7.4 90 21-112 14-106 (441)
45 PRK05201 hslU ATP-dependent pr 99.2 3.2E-11 6.9E-16 90.6 7.3 94 20-115 16-112 (443)
46 COG2256 MGS1 ATPase related to 99.0 6.5E-10 1.4E-14 82.6 6.5 54 54-115 48-101 (436)
47 PF05496 RuvB_N: Holliday junc 99.0 8.1E-10 1.7E-14 76.9 5.7 55 20-83 25-79 (233)
48 TIGR02639 ClpA ATP-dependent C 98.8 6.2E-09 1.3E-13 83.6 6.3 62 52-114 201-274 (731)
49 COG3839 MalK ABC-type sugar tr 98.8 8.3E-10 1.8E-14 81.1 -0.1 58 51-109 26-83 (338)
50 TIGR00763 lon ATP-dependent pr 98.8 1.4E-08 3.1E-13 82.0 6.8 85 20-112 321-413 (775)
51 COG3842 PotA ABC-type spermidi 98.8 3E-09 6.5E-14 78.5 2.0 63 46-109 21-85 (352)
52 TIGR00764 lon_rel lon-related 98.8 1.1E-08 2.5E-13 80.5 5.3 98 2-117 3-109 (608)
53 PRK05342 clpX ATP-dependent pr 98.8 2.4E-08 5.3E-13 75.4 6.6 87 21-109 73-164 (412)
54 COG1220 HslU ATP-dependent pro 98.7 3.3E-08 7.2E-13 72.5 6.3 91 21-112 17-109 (444)
55 CHL00095 clpC Clp protease ATP 98.7 2.7E-08 5.9E-13 80.8 6.4 65 49-113 195-270 (821)
56 COG2255 RuvB Holliday junction 98.7 1.5E-08 3.3E-13 72.7 4.3 53 20-81 27-79 (332)
57 COG0703 AroK Shikimate kinase 98.7 3.7E-08 8.1E-13 66.0 5.3 56 55-116 3-58 (172)
58 COG0464 SpoVK ATPases of the A 98.7 6.4E-08 1.4E-12 74.5 6.8 76 38-115 2-77 (494)
59 PF05673 DUF815: Protein of un 98.7 8.9E-08 1.9E-12 67.5 6.9 56 20-85 28-83 (249)
60 KOG2028|consensus 98.7 8E-08 1.7E-12 71.4 6.8 54 56-114 164-217 (554)
61 smart00763 AAA_PrkA PrkA AAA d 98.7 8.3E-08 1.8E-12 71.1 6.9 52 20-80 52-104 (361)
62 COG4619 ABC-type uncharacteriz 98.6 4.2E-08 9.2E-13 65.9 4.4 49 50-98 25-73 (223)
63 smart00382 AAA ATPases associa 98.6 1E-07 2.2E-12 60.0 6.0 61 54-114 2-78 (148)
64 COG1126 GlnQ ABC-type polar am 98.6 9.7E-09 2.1E-13 71.1 1.1 67 43-109 15-85 (240)
65 TIGR00635 ruvB Holliday juncti 98.6 7.9E-08 1.7E-12 69.6 5.6 54 20-82 5-58 (305)
66 KOG0736|consensus 98.6 3.8E-08 8.2E-13 78.3 4.1 63 54-117 431-493 (953)
67 TIGR00382 clpX endopeptidase C 98.6 1E-07 2.2E-12 72.1 6.0 54 54-108 116-171 (413)
68 COG1117 PstB ABC-type phosphat 98.6 2.5E-08 5.4E-13 69.1 2.5 73 38-110 15-97 (253)
69 COG4559 ABC-type hemin transpo 98.6 1.9E-08 4.1E-13 69.7 1.3 75 36-110 7-83 (259)
70 KOG0741|consensus 98.6 3E-08 6.4E-13 76.4 2.4 66 51-116 535-600 (744)
71 PRK00080 ruvB Holliday junctio 98.6 1.5E-07 3.2E-12 69.1 5.9 54 20-82 26-79 (328)
72 COG1120 FepC ABC-type cobalami 98.6 3.7E-08 8E-13 70.0 2.5 52 43-94 15-68 (258)
73 KOG0742|consensus 98.6 2.3E-07 5E-12 69.8 6.6 60 53-114 383-442 (630)
74 PF01078 Mg_chelatase: Magnesi 98.5 9.5E-08 2.1E-12 65.9 4.0 45 20-80 4-48 (206)
75 KOG0989|consensus 98.5 1.4E-07 3.1E-12 68.2 5.0 47 20-80 37-83 (346)
76 PRK10865 protein disaggregatio 98.5 3.4E-07 7.4E-12 74.8 7.8 60 52-112 197-268 (857)
77 COG1224 TIP49 DNA helicase TIP 98.5 2.8E-07 6E-12 68.2 6.1 58 50-109 61-120 (450)
78 PF06068 TIP49: TIP49 C-termin 98.5 2.4E-07 5.2E-12 68.8 5.6 79 20-108 25-104 (398)
79 COG1118 CysA ABC-type sulfate/ 98.5 3E-08 6.6E-13 71.7 0.9 61 51-111 25-87 (345)
80 COG1116 TauB ABC-type nitrate/ 98.5 1E-07 2.2E-12 67.1 3.5 43 44-86 17-61 (248)
81 PRK13948 shikimate kinase; Pro 98.5 2.9E-07 6.3E-12 62.5 5.3 43 53-98 9-51 (182)
82 PRK13947 shikimate kinase; Pro 98.5 2.6E-07 5.7E-12 61.5 5.0 36 56-94 3-38 (171)
83 PRK13949 shikimate kinase; Pro 98.5 3.1E-07 6.8E-12 61.6 5.4 28 56-83 3-30 (169)
84 PRK14962 DNA polymerase III su 98.5 2.9E-07 6.3E-12 70.7 5.8 48 20-80 15-62 (472)
85 PRK00625 shikimate kinase; Pro 98.5 2.5E-07 5.5E-12 62.3 4.9 36 56-94 2-37 (173)
86 PRK00131 aroK shikimate kinase 98.5 3.3E-07 7.1E-12 60.8 5.4 30 53-82 3-32 (175)
87 COG1219 ClpX ATP-dependent pro 98.5 2.7E-07 5.8E-12 67.4 5.2 57 54-111 97-155 (408)
88 PRK08118 topology modulation p 98.5 3.4E-07 7.4E-12 61.3 5.4 29 56-84 3-31 (167)
89 PRK04195 replication factor C 98.5 2.7E-07 6E-12 71.0 5.6 55 20-84 15-69 (482)
90 PF13207 AAA_17: AAA domain; P 98.5 1.2E-07 2.6E-12 59.5 2.7 25 57-81 2-26 (121)
91 TIGR03345 VI_ClpV1 type VI sec 98.4 7.6E-07 1.6E-11 72.7 7.7 62 52-113 206-278 (852)
92 COG1102 Cmk Cytidylate kinase 98.4 1.5E-07 3.2E-12 62.5 2.9 54 57-113 3-56 (179)
93 KOG0735|consensus 98.4 4.6E-07 1E-11 71.9 5.7 65 54-118 431-498 (952)
94 PRK13342 recombination factor 98.4 8.6E-07 1.9E-11 67.1 6.9 73 20-113 13-87 (413)
95 COG0466 Lon ATP-dependent Lon 98.4 7.5E-07 1.6E-11 70.6 6.6 84 20-111 324-415 (782)
96 TIGR03346 chaperone_ClpB ATP-d 98.4 1.1E-06 2.3E-11 71.9 7.6 62 52-113 192-264 (852)
97 PRK14532 adenylate kinase; Pro 98.4 5.5E-07 1.2E-11 60.9 5.1 36 56-94 2-37 (188)
98 PF07728 AAA_5: AAA domain (dy 98.4 2.3E-07 5.1E-12 59.8 3.1 29 56-84 1-29 (139)
99 PRK14961 DNA polymerase III su 98.4 6.9E-07 1.5E-11 66.6 6.0 47 20-79 17-63 (363)
100 COG1127 Ttg2A ABC-type transpo 98.4 2.1E-07 4.6E-12 65.4 3.0 59 39-97 17-77 (263)
101 COG1125 OpuBA ABC-type proline 98.4 2.3E-07 5E-12 65.9 3.1 68 42-109 13-83 (309)
102 COG4167 SapF ABC-type antimicr 98.4 1.3E-07 2.7E-12 64.5 1.7 61 51-111 36-97 (267)
103 COG1136 SalX ABC-type antimicr 98.4 5E-07 1.1E-11 63.1 4.7 43 50-92 27-69 (226)
104 PRK07940 DNA polymerase III su 98.4 6.9E-07 1.5E-11 67.3 5.4 57 20-80 6-62 (394)
105 PLN03025 replication factor C 98.4 8E-07 1.7E-11 65.0 5.4 45 20-78 14-58 (319)
106 PRK07261 topology modulation p 98.4 9E-07 2E-11 59.4 5.2 28 56-83 2-29 (171)
107 PF07726 AAA_3: ATPase family 98.4 2.5E-07 5.4E-12 59.3 2.2 30 56-85 1-30 (131)
108 COG4604 CeuD ABC-type enteroch 98.3 5.5E-07 1.2E-11 61.9 3.9 70 45-114 16-87 (252)
109 COG3638 ABC-type phosphate/pho 98.3 7.6E-07 1.6E-11 62.5 4.6 49 50-98 26-74 (258)
110 PRK14956 DNA polymerase III su 98.3 8.7E-07 1.9E-11 68.0 5.3 48 20-80 19-66 (484)
111 KOG0745|consensus 98.3 8.4E-07 1.8E-11 67.1 5.0 58 55-113 227-286 (564)
112 TIGR02640 gas_vesic_GvpN gas v 98.3 6E-07 1.3E-11 64.1 4.0 32 54-85 21-52 (262)
113 cd03214 ABC_Iron-Siderophores_ 98.3 1E-06 2.2E-11 59.4 4.8 40 50-89 21-60 (180)
114 COG1122 CbiO ABC-type cobalt t 98.3 5.2E-08 1.1E-12 68.6 -1.6 69 50-118 26-96 (235)
115 PRK11034 clpA ATP-dependent Cl 98.3 1.4E-06 3.1E-11 70.3 6.3 63 51-113 204-277 (758)
116 TIGR00960 3a0501s02 Type II (G 98.3 8.1E-07 1.8E-11 61.4 4.3 37 50-86 25-61 (216)
117 cd00464 SK Shikimate kinase (S 98.3 1.3E-06 2.9E-11 56.9 5.1 27 56-82 1-27 (154)
118 cd00009 AAA The AAA+ (ATPases 98.3 1.4E-06 3E-11 55.2 5.0 26 53-78 18-43 (151)
119 cd03263 ABC_subfamily_A The AB 98.3 2.1E-07 4.6E-12 64.4 1.1 41 45-85 17-59 (220)
120 TIGR02673 FtsE cell division A 98.3 9.4E-07 2E-11 60.9 4.4 37 50-86 24-60 (214)
121 PRK14955 DNA polymerase III su 98.3 1.4E-06 3.1E-11 65.6 5.6 48 20-80 17-64 (397)
122 COG1124 DppF ABC-type dipeptid 98.3 6.1E-07 1.3E-11 63.1 3.3 62 50-111 29-92 (252)
123 PRK14958 DNA polymerase III su 98.3 1.4E-06 3E-11 67.6 5.6 48 20-80 17-64 (509)
124 PRK14964 DNA polymerase III su 98.3 1.4E-06 3.1E-11 67.2 5.6 47 20-79 14-60 (491)
125 PRK10787 DNA-binding ATP-depen 98.3 2.6E-06 5.7E-11 69.1 7.4 58 20-85 323-380 (784)
126 TIGR03238 dnd_assoc_3 dnd syst 98.3 1.2E-06 2.6E-11 67.1 5.0 61 51-113 29-90 (504)
127 TIGR01650 PD_CobS cobaltochela 98.3 6.6E-07 1.4E-11 65.7 3.5 36 50-85 60-95 (327)
128 TIGR02315 ABC_phnC phosphonate 98.3 1.1E-06 2.4E-11 61.6 4.6 37 50-86 24-60 (243)
129 PRK13341 recombination factor 98.3 4.5E-06 9.7E-11 67.2 8.4 52 20-84 29-82 (725)
130 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.3 6.2E-07 1.3E-11 62.0 3.1 36 50-85 26-61 (218)
131 cd03292 ABC_FtsE_transporter F 98.3 1E-06 2.3E-11 60.6 4.2 37 50-86 23-59 (214)
132 TIGR03420 DnaA_homol_Hda DnaA 98.3 2.8E-06 6E-11 58.8 6.4 27 53-79 37-63 (226)
133 PRK14970 DNA polymerase III su 98.3 5.6E-06 1.2E-10 61.6 8.4 48 20-80 18-65 (367)
134 TIGR01360 aden_kin_iso1 adenyl 98.3 1.4E-06 3.1E-11 58.5 4.8 26 56-81 5-30 (188)
135 PRK06645 DNA polymerase III su 98.3 1.7E-06 3.6E-11 67.1 5.6 48 20-80 22-69 (507)
136 COG2884 FtsE Predicted ATPase 98.3 1.3E-06 2.9E-11 59.6 4.5 67 43-109 15-87 (223)
137 KOG0991|consensus 98.3 1.7E-06 3.8E-11 61.0 5.2 45 20-78 28-72 (333)
138 PRK14960 DNA polymerase III su 98.3 1.7E-06 3.7E-11 68.6 5.6 48 20-80 16-63 (702)
139 PRK14963 DNA polymerase III su 98.3 1.6E-06 3.5E-11 67.2 5.3 47 20-79 15-61 (504)
140 cd03258 ABC_MetN_methionine_tr 98.3 1.4E-06 2.9E-11 60.9 4.5 38 49-86 26-63 (233)
141 PRK13407 bchI magnesium chelat 98.3 2.2E-06 4.7E-11 63.3 5.7 51 13-79 4-54 (334)
142 PRK03839 putative kinase; Prov 98.3 8.4E-07 1.8E-11 59.7 3.3 27 57-83 3-29 (180)
143 cd03264 ABC_drug_resistance_li 98.3 3.2E-07 6.9E-12 63.1 1.2 34 51-85 23-56 (211)
144 COG4608 AppF ABC-type oligopep 98.3 1.6E-06 3.5E-11 61.8 4.8 61 50-110 35-96 (268)
145 COG0606 Predicted ATPase with 98.3 1E-06 2.2E-11 67.2 3.9 45 20-80 180-224 (490)
146 COG4148 ModC ABC-type molybdat 98.3 2.1E-07 4.6E-12 66.9 0.2 60 54-113 24-88 (352)
147 cd03265 ABC_DrrA DrrA is the A 98.2 2.9E-07 6.2E-12 63.8 0.8 36 50-85 22-57 (220)
148 PHA02244 ATPase-like protein 98.2 2E-06 4.3E-11 64.2 5.3 31 54-84 119-149 (383)
149 PRK14530 adenylate kinase; Pro 98.2 1.3E-06 2.8E-11 60.5 4.1 27 56-82 5-31 (215)
150 TIGR02211 LolD_lipo_ex lipopro 98.2 1.5E-06 3.2E-11 60.2 4.4 38 49-86 26-63 (221)
151 cd03262 ABC_HisP_GlnQ_permease 98.2 1E-06 2.2E-11 60.7 3.5 36 50-85 22-57 (213)
152 PF13671 AAA_33: AAA domain; P 98.2 9.5E-07 2.1E-11 56.9 3.1 23 57-79 2-24 (143)
153 PRK14949 DNA polymerase III su 98.2 2E-06 4.3E-11 70.1 5.5 49 20-81 17-65 (944)
154 PRK11650 ugpC glycerol-3-phosp 98.2 1.6E-07 3.5E-12 69.8 -0.6 39 50-88 26-64 (356)
155 cd03269 ABC_putative_ATPase Th 98.2 9.8E-07 2.1E-11 60.7 3.2 36 50-85 22-57 (210)
156 PRK08903 DnaA regulatory inact 98.2 4.4E-06 9.5E-11 58.1 6.5 27 52-78 40-66 (227)
157 cd03266 ABC_NatA_sodium_export 98.2 3.9E-07 8.4E-12 63.0 1.2 41 45-85 20-62 (218)
158 TIGR01166 cbiO cobalt transpor 98.2 1E-06 2.2E-11 59.8 3.2 36 50-85 14-49 (190)
159 TIGR01188 drrA daunorubicin re 98.2 4.2E-07 9.1E-12 66.1 1.3 36 50-85 15-50 (302)
160 PRK05057 aroK shikimate kinase 98.2 3E-06 6.5E-11 56.9 5.4 29 54-82 4-32 (172)
161 PRK12402 replication factor C 98.2 2.6E-06 5.5E-11 62.2 5.4 47 20-80 16-62 (337)
162 cd03261 ABC_Org_Solvent_Resist 98.2 1E-06 2.2E-11 61.7 3.1 36 50-85 22-57 (235)
163 cd03256 ABC_PhnC_transporter A 98.2 1.9E-06 4.1E-11 60.4 4.5 36 50-85 23-58 (241)
164 PRK10908 cell division protein 98.2 1.9E-06 4E-11 59.8 4.4 37 50-86 24-60 (222)
165 cd03226 ABC_cobalt_CbiO_domain 98.2 1.1E-06 2.4E-11 60.2 3.2 36 50-85 22-57 (205)
166 PRK11034 clpA ATP-dependent Cl 98.2 2E-06 4.2E-11 69.5 5.0 60 21-90 460-523 (758)
167 cd03219 ABC_Mj1267_LivG_branch 98.2 1.1E-06 2.4E-11 61.4 3.2 36 50-85 22-57 (236)
168 cd03225 ABC_cobalt_CbiO_domain 98.2 1.2E-06 2.7E-11 60.2 3.3 36 51-86 24-59 (211)
169 PRK14957 DNA polymerase III su 98.2 2.9E-06 6.2E-11 66.3 5.7 48 20-80 17-64 (546)
170 COG4133 CcmA ABC-type transpor 98.2 2.8E-06 6E-11 57.9 4.8 46 43-88 15-62 (209)
171 cd03257 ABC_NikE_OppD_transpor 98.2 1.3E-06 2.8E-11 60.6 3.4 36 50-85 27-62 (228)
172 TIGR02928 orc1/cdc6 family rep 98.2 5.6E-06 1.2E-10 61.2 7.0 58 10-79 8-65 (365)
173 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 3.8E-07 8.3E-12 63.9 0.7 36 50-85 23-58 (236)
174 TIGR03608 L_ocin_972_ABC putat 98.2 1.2E-06 2.6E-11 60.0 3.2 35 51-85 21-55 (206)
175 CHL00081 chlI Mg-protoporyphyr 98.2 3.2E-06 7E-11 62.7 5.5 55 10-80 10-64 (350)
176 cd03235 ABC_Metallic_Cations A 98.2 1.3E-06 2.7E-11 60.3 3.2 36 50-85 21-56 (213)
177 PRK14969 DNA polymerase III su 98.2 3E-06 6.5E-11 66.0 5.6 48 20-80 17-64 (527)
178 cd03301 ABC_MalK_N The N-termi 98.2 1.3E-06 2.8E-11 60.1 3.2 36 50-85 22-57 (213)
179 cd03260 ABC_PstB_phosphate_tra 98.2 1.7E-06 3.7E-11 60.2 3.8 36 50-85 22-62 (227)
180 TIGR03410 urea_trans_UrtE urea 98.2 1.4E-06 3.1E-11 60.7 3.4 36 50-85 22-57 (230)
181 cd03224 ABC_TM1139_LivF_branch 98.2 1.3E-06 2.9E-11 60.4 3.2 36 50-85 22-57 (222)
182 cd03228 ABCC_MRP_Like The MRP 98.2 2.1E-06 4.6E-11 57.4 4.1 41 49-89 23-63 (171)
183 cd03247 ABCC_cytochrome_bd The 98.2 1.6E-06 3.5E-11 58.3 3.4 39 49-87 23-61 (178)
184 TIGR01359 UMP_CMP_kin_fam UMP- 98.2 1.4E-06 3.1E-11 58.5 3.2 34 57-93 2-35 (183)
185 PRK11629 lolD lipoprotein tran 98.2 1.4E-06 3E-11 60.9 3.2 36 50-85 31-66 (233)
186 PRK10584 putative ABC transpor 98.2 2.3E-06 4.9E-11 59.6 4.2 37 49-85 31-67 (228)
187 PRK14531 adenylate kinase; Pro 98.2 1.9E-06 4.1E-11 58.3 3.7 27 56-82 4-30 (183)
188 PHA02544 44 clamp loader, smal 98.2 4.3E-06 9.3E-11 60.8 5.8 52 20-84 22-73 (316)
189 KOG2004|consensus 98.2 3.9E-06 8.5E-11 66.8 5.9 81 20-109 412-501 (906)
190 PRK08691 DNA polymerase III su 98.2 3E-06 6.6E-11 67.5 5.3 48 20-80 17-64 (709)
191 cd03296 ABC_CysA_sulfate_impor 98.2 1.5E-06 3.3E-11 61.0 3.2 36 50-85 24-59 (239)
192 cd03218 ABC_YhbG The ABC trans 98.2 1.7E-06 3.7E-11 60.3 3.5 36 50-85 22-57 (232)
193 cd03259 ABC_Carb_Solutes_like 98.2 1.6E-06 3.6E-11 59.7 3.4 36 50-85 22-57 (213)
194 PRK13540 cytochrome c biogenes 98.2 7E-07 1.5E-11 61.1 1.5 37 50-86 23-59 (200)
195 cd03229 ABC_Class3 This class 98.2 1.7E-06 3.6E-11 58.3 3.3 37 50-86 22-58 (178)
196 PF00005 ABC_tran: ABC transpo 98.2 5.5E-07 1.2E-11 57.7 0.9 35 51-85 8-42 (137)
197 PRK05896 DNA polymerase III su 98.2 4E-06 8.6E-11 66.0 5.7 47 20-79 17-63 (605)
198 PRK14954 DNA polymerase III su 98.2 3.9E-06 8.4E-11 66.5 5.7 48 20-80 17-64 (620)
199 COG3840 ThiQ ABC-type thiamine 98.2 1.6E-06 3.4E-11 59.1 3.0 59 50-109 21-79 (231)
200 PRK10247 putative ABC transpor 98.2 1.9E-06 4E-11 60.1 3.5 36 50-85 29-64 (225)
201 PRK11248 tauB taurine transpor 98.2 1.7E-06 3.7E-11 61.5 3.3 36 50-85 23-58 (255)
202 COG0563 Adk Adenylate kinase a 98.2 1.8E-06 3.9E-11 58.4 3.3 27 56-82 2-28 (178)
203 cd03246 ABCC_Protease_Secretio 98.2 2.8E-06 6E-11 56.9 4.2 38 51-88 25-62 (173)
204 cd03216 ABC_Carb_Monos_I This 98.2 1.8E-06 3.8E-11 57.4 3.1 38 49-86 21-58 (163)
205 PRK13650 cbiO cobalt transport 98.2 5.3E-07 1.2E-11 64.8 0.7 37 50-86 29-65 (279)
206 cd03293 ABC_NrtD_SsuB_transpor 98.2 1.6E-06 3.4E-11 60.1 3.0 36 50-85 26-61 (220)
207 cd03215 ABC_Carb_Monos_II This 98.2 1.7E-06 3.8E-11 58.4 3.1 37 50-86 22-58 (182)
208 cd03267 ABC_NatA_like Similar 98.2 1.5E-06 3.3E-11 60.9 3.0 44 42-85 33-78 (236)
209 PRK06547 hypothetical protein; 98.2 1E-05 2.3E-10 54.4 6.9 31 52-82 13-43 (172)
210 cd03251 ABCC_MsbA MsbA is an e 98.2 2.6E-06 5.6E-11 59.4 4.1 37 50-86 24-60 (234)
211 PRK11124 artP arginine transpo 98.2 1.9E-06 4E-11 60.6 3.4 36 50-85 24-59 (242)
212 PRK13541 cytochrome c biogenes 98.2 2E-06 4.3E-11 58.6 3.4 37 49-85 21-57 (195)
213 PRK13946 shikimate kinase; Pro 98.2 5E-06 1.1E-10 56.3 5.3 30 54-83 10-39 (184)
214 cd03254 ABCC_Glucan_exporter_l 98.2 2.5E-06 5.4E-11 59.3 3.9 42 45-86 18-61 (229)
215 PRK14952 DNA polymerase III su 98.2 4.3E-06 9.4E-11 65.8 5.6 47 20-79 14-60 (584)
216 cd03222 ABC_RNaseL_inhibitor T 98.2 2.3E-06 5.1E-11 57.8 3.6 37 50-86 21-57 (177)
217 PRK13538 cytochrome c biogenes 98.1 2E-06 4.4E-11 59.0 3.3 37 50-86 23-59 (204)
218 PRK10895 lipopolysaccharide AB 98.1 2E-06 4.3E-11 60.4 3.3 36 50-85 25-60 (241)
219 COG1123 ATPase components of v 98.1 5.2E-07 1.1E-11 69.9 0.4 61 51-111 314-377 (539)
220 TIGR02769 nickel_nikE nickel i 98.1 3.1E-06 6.7E-11 60.4 4.3 37 50-86 33-69 (265)
221 cd00227 CPT Chloramphenicol (C 98.1 3E-06 6.5E-11 56.8 4.0 29 55-83 3-31 (175)
222 PRK14250 phosphate ABC transpo 98.1 2.1E-06 4.5E-11 60.4 3.4 37 50-86 25-61 (241)
223 PRK11432 fbpC ferric transport 98.1 1.8E-06 3.9E-11 64.1 3.2 37 50-86 28-64 (351)
224 TIGR01288 nodI ATP-binding ABC 98.1 5.4E-07 1.2E-11 65.5 0.4 36 50-85 26-61 (303)
225 PF07724 AAA_2: AAA domain (Cd 98.1 2.8E-06 6.1E-11 57.1 3.8 28 53-80 2-29 (171)
226 PRK10771 thiQ thiamine transpo 98.1 2E-06 4.4E-11 60.0 3.2 37 49-85 20-56 (232)
227 cd03223 ABCD_peroxisomal_ALDP 98.1 2.1E-06 4.5E-11 57.3 3.1 36 50-85 23-58 (166)
228 PRK13647 cbiO cobalt transport 98.1 6.8E-07 1.5E-11 64.1 0.8 36 50-85 27-62 (274)
229 cd03230 ABC_DR_subfamily_A Thi 98.1 2.2E-06 4.7E-11 57.4 3.2 37 50-86 22-58 (173)
230 TIGR01184 ntrCD nitrate transp 98.1 2.2E-06 4.8E-11 59.9 3.3 36 50-85 7-42 (230)
231 cd03268 ABC_BcrA_bacitracin_re 98.1 2.1E-06 4.6E-11 58.9 3.2 36 50-85 22-57 (208)
232 PRK12323 DNA polymerase III su 98.1 4.6E-06 1E-10 66.2 5.4 48 20-80 17-64 (700)
233 PRK06893 DNA replication initi 98.1 3.6E-06 7.9E-11 58.9 4.4 24 55-78 40-63 (229)
234 PRK06217 hypothetical protein; 98.1 2.2E-06 4.7E-11 58.0 3.1 27 56-82 3-29 (183)
235 PRK15177 Vi polysaccharide exp 98.1 2E-06 4.3E-11 59.6 3.0 36 50-85 9-44 (213)
236 TIGR02314 ABC_MetN D-methionin 98.1 2.7E-06 5.9E-11 63.0 3.9 36 51-86 28-63 (343)
237 TIGR03005 ectoine_ehuA ectoine 98.1 2.2E-06 4.8E-11 60.5 3.3 37 50-86 22-58 (252)
238 PRK11153 metN DL-methionine tr 98.1 2.9E-06 6.2E-11 62.8 3.9 36 51-86 28-63 (343)
239 cd03295 ABC_OpuCA_Osmoprotecti 98.1 2.3E-06 5.1E-11 60.1 3.3 36 50-85 23-58 (242)
240 cd03248 ABCC_TAP TAP, the Tran 98.1 3.4E-06 7.4E-11 58.6 4.1 37 50-86 36-72 (226)
241 PRK11831 putative ABC transpor 98.1 3.1E-06 6.8E-11 60.5 4.0 36 50-85 29-64 (269)
242 cd03252 ABCC_Hemolysin The ABC 98.1 3.1E-06 6.7E-11 59.2 3.9 36 51-86 25-60 (237)
243 PRK13765 ATP-dependent proteas 98.1 3.5E-06 7.7E-11 66.9 4.6 61 2-80 16-76 (637)
244 PRK11308 dppF dipeptide transp 98.1 3.4E-06 7.3E-11 62.1 4.2 40 50-89 37-76 (327)
245 cd03298 ABC_ThiQ_thiamine_tran 98.1 2.3E-06 5.1E-11 58.8 3.2 37 49-85 19-55 (211)
246 cd03253 ABCC_ATM1_transporter 98.1 3.3E-06 7.2E-11 59.0 4.0 37 50-86 23-59 (236)
247 PRK11247 ssuB aliphatic sulfon 98.1 2.2E-06 4.8E-11 61.0 3.2 36 50-85 34-69 (257)
248 PRK09493 glnQ glutamine ABC tr 98.1 2.4E-06 5.1E-11 60.0 3.3 36 50-85 23-58 (240)
249 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 2.5E-06 5.4E-11 59.7 3.4 38 49-86 24-61 (238)
250 TIGR03265 PhnT2 putative 2-ami 98.1 2.1E-06 4.5E-11 63.9 3.1 38 50-87 26-63 (353)
251 PRK10419 nikE nickel transport 98.1 3.8E-06 8.2E-11 60.1 4.4 37 49-85 33-69 (268)
252 TIGR02397 dnaX_nterm DNA polym 98.1 7.3E-06 1.6E-10 60.4 6.0 47 20-79 15-61 (355)
253 PRK06620 hypothetical protein; 98.1 6.8E-06 1.5E-10 57.1 5.5 26 55-80 45-70 (214)
254 cd03244 ABCC_MRP_domain2 Domai 98.1 3.5E-06 7.5E-11 58.3 4.0 37 50-86 26-62 (221)
255 TIGR03771 anch_rpt_ABC anchore 98.1 3.5E-06 7.6E-11 58.6 4.0 35 51-85 3-37 (223)
256 PF03215 Rad17: Rad17 cell cyc 98.1 5.2E-06 1.1E-10 64.5 5.3 30 54-83 45-74 (519)
257 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 2.3E-06 4.9E-11 55.9 2.9 37 50-86 22-58 (144)
258 TIGR02770 nickel_nikD nickel i 98.1 2.6E-06 5.7E-11 59.4 3.4 36 50-85 8-47 (230)
259 TIGR02323 CP_lyasePhnK phospho 98.1 2.4E-06 5.2E-11 60.4 3.2 38 49-86 24-61 (253)
260 TIGR01277 thiQ thiamine ABC tr 98.1 2.4E-06 5.1E-11 59.0 3.1 37 49-85 19-55 (213)
261 PRK14951 DNA polymerase III su 98.1 6.2E-06 1.4E-10 65.3 5.7 48 20-80 17-64 (618)
262 cd01428 ADK Adenylate kinase ( 98.1 4.2E-06 9.2E-11 56.5 4.2 34 57-93 2-35 (194)
263 TIGR01189 ccmA heme ABC export 98.1 2.7E-06 5.9E-11 58.0 3.3 36 50-85 22-57 (198)
264 cd03250 ABCC_MRP_domain1 Domai 98.1 2.8E-06 6E-11 58.2 3.4 41 45-85 20-62 (204)
265 PRK13543 cytochrome c biogenes 98.1 2.5E-06 5.5E-11 58.9 3.2 37 49-85 32-68 (214)
266 TIGR02639 ClpA ATP-dependent C 98.1 6.2E-06 1.3E-10 66.5 5.8 34 56-90 486-519 (731)
267 PRK07994 DNA polymerase III su 98.1 5.9E-06 1.3E-10 65.6 5.6 48 20-80 17-64 (647)
268 PRK08084 DNA replication initi 98.1 1.1E-05 2.3E-10 56.8 6.4 25 55-79 46-70 (235)
269 PRK11264 putative amino-acid A 98.1 2.7E-06 6E-11 59.9 3.4 36 50-85 25-60 (250)
270 TIGR01313 therm_gnt_kin carboh 98.1 2.4E-06 5.3E-11 56.4 2.9 25 57-81 1-25 (163)
271 TIGR01186 proV glycine betaine 98.1 3.5E-06 7.7E-11 62.9 4.1 40 50-89 15-54 (363)
272 COG4525 TauB ABC-type taurine 98.1 3.6E-06 7.7E-11 58.0 3.7 41 45-85 20-62 (259)
273 PRK11300 livG leucine/isoleuci 98.1 2.6E-06 5.6E-11 60.2 3.2 36 50-85 27-62 (255)
274 PRK13548 hmuV hemin importer A 98.1 2.7E-06 5.8E-11 60.5 3.3 36 50-85 24-59 (258)
275 PRK13638 cbiO cobalt transport 98.1 2.3E-06 5.1E-11 61.2 3.0 41 45-85 16-58 (271)
276 PRK15455 PrkA family serine pr 98.1 8.2E-06 1.8E-10 64.0 6.1 57 20-84 77-133 (644)
277 PRK15112 antimicrobial peptide 98.1 2.9E-06 6.3E-11 60.6 3.5 36 50-85 35-70 (267)
278 cd02020 CMPK Cytidine monophos 98.1 3.3E-06 7.2E-11 54.4 3.5 27 57-83 2-28 (147)
279 PRK14526 adenylate kinase; Pro 98.1 4.8E-06 1E-10 57.8 4.4 33 57-92 3-35 (211)
280 TIGR02868 CydC thiol reductant 98.1 3.3E-06 7.1E-11 65.5 4.0 43 45-87 350-394 (529)
281 COG2607 Predicted ATPase (AAA+ 98.1 1E-05 2.2E-10 57.1 6.0 55 20-84 61-115 (287)
282 PRK13539 cytochrome c biogenes 98.1 2.9E-06 6.2E-11 58.4 3.3 36 50-85 24-59 (207)
283 PRK07003 DNA polymerase III su 98.1 6.1E-06 1.3E-10 66.4 5.4 48 20-80 17-64 (830)
284 PRK09452 potA putrescine/sperm 98.1 2.4E-06 5.1E-11 64.0 3.0 37 50-86 36-72 (375)
285 PRK11701 phnK phosphonate C-P 98.1 2.9E-06 6.2E-11 60.2 3.3 36 50-85 28-63 (258)
286 PTZ00088 adenylate kinase 1; P 98.1 3.8E-06 8.2E-11 59.0 3.8 36 55-93 7-42 (229)
287 PRK14527 adenylate kinase; Pro 98.1 5.1E-06 1.1E-10 56.5 4.4 30 53-82 5-34 (191)
288 cd03245 ABCC_bacteriocin_expor 98.1 3.1E-06 6.8E-11 58.5 3.4 36 50-85 26-61 (220)
289 COG0714 MoxR-like ATPases [Gen 98.1 4.4E-06 9.6E-11 61.4 4.3 37 50-86 39-75 (329)
290 PRK09111 DNA polymerase III su 98.1 6.8E-06 1.5E-10 64.9 5.6 48 20-80 25-72 (598)
291 cd03213 ABCG_EPDR ABCG transpo 98.1 3E-06 6.5E-11 57.8 3.2 37 50-86 31-69 (194)
292 cd03294 ABC_Pro_Gly_Bertaine T 98.1 3E-06 6.5E-11 60.6 3.3 44 42-85 36-81 (269)
293 cd03234 ABCG_White The White s 98.1 3E-06 6.5E-11 59.0 3.2 37 49-85 28-67 (226)
294 COG1101 PhnK ABC-type uncharac 98.1 5.8E-06 1.3E-10 57.6 4.5 61 51-111 29-90 (263)
295 cd03297 ABC_ModC_molybdenum_tr 98.1 3.1E-06 6.7E-11 58.4 3.2 36 49-85 19-54 (214)
296 PLN02200 adenylate kinase fami 98.1 7E-06 1.5E-10 57.8 5.0 39 52-93 41-79 (234)
297 TIGR03411 urea_trans_UrtD urea 98.1 3.2E-06 7E-11 59.3 3.3 36 50-85 24-59 (242)
298 PRK10575 iron-hydroxamate tran 98.1 3E-06 6.5E-11 60.4 3.2 36 50-85 33-68 (265)
299 PRK15056 manganese/iron transp 98.1 2.8E-06 6.2E-11 60.8 3.1 36 50-85 29-64 (272)
300 PRK15079 oligopeptide ABC tran 98.1 4.4E-06 9.5E-11 61.6 4.1 37 51-87 44-80 (331)
301 PRK11000 maltose/maltodextrin 98.1 2.9E-06 6.4E-11 63.4 3.2 36 50-85 25-60 (369)
302 cd03290 ABCC_SUR1_N The SUR do 98.1 3.6E-06 7.7E-11 58.3 3.4 41 45-85 16-58 (218)
303 TIGR00235 udk uridine kinase. 98.1 7.4E-06 1.6E-10 56.4 4.9 25 56-80 8-32 (207)
304 PRK14021 bifunctional shikimat 98.1 7.5E-06 1.6E-10 64.0 5.5 53 55-113 7-59 (542)
305 cd03231 ABC_CcmA_heme_exporter 98.1 1.4E-06 2.9E-11 59.8 1.2 36 50-85 22-57 (201)
306 PRK07133 DNA polymerase III su 98.1 7.8E-06 1.7E-10 65.6 5.6 48 20-80 19-66 (725)
307 PRK13648 cbiO cobalt transport 98.1 4.2E-06 9.1E-11 59.8 3.7 36 50-85 31-66 (269)
308 PF13238 AAA_18: AAA domain; P 98.1 3.9E-06 8.5E-11 52.7 3.2 22 57-78 1-22 (129)
309 PRK11614 livF leucine/isoleuci 98.1 3E-06 6.6E-11 59.3 2.9 36 50-85 27-62 (237)
310 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 3.2E-06 6.9E-11 58.9 3.0 50 36-85 28-79 (224)
311 PRK06305 DNA polymerase III su 98.1 9E-06 1.9E-10 62.3 5.7 48 20-80 18-65 (451)
312 PRK13645 cbiO cobalt transport 98.1 3.2E-06 6.9E-11 61.0 3.1 36 50-85 33-68 (289)
313 PRK05563 DNA polymerase III su 98.1 9.2E-06 2E-10 63.8 5.9 47 20-79 17-63 (559)
314 PRK10851 sulfate/thiosulfate t 98.1 3.3E-06 7.2E-11 62.8 3.2 37 50-86 24-60 (353)
315 TIGR02324 CP_lyasePhnL phospho 98.1 3.5E-06 7.5E-11 58.5 3.1 37 50-86 30-66 (224)
316 PRK11176 lipid transporter ATP 98.1 5.2E-06 1.1E-10 65.1 4.5 46 44-89 357-404 (582)
317 PRK13632 cbiO cobalt transport 98.1 3.7E-06 7.9E-11 60.2 3.3 36 50-85 31-66 (271)
318 cd02021 GntK Gluconate kinase 98.1 3.3E-06 7.2E-11 55.0 2.8 25 57-81 2-26 (150)
319 PRK11607 potG putrescine trans 98.1 3.1E-06 6.8E-11 63.4 3.0 37 50-86 41-77 (377)
320 PRK14950 DNA polymerase III su 98.1 8.3E-06 1.8E-10 64.3 5.5 47 20-79 17-63 (585)
321 PRK10619 histidine/lysine/argi 98.1 3.7E-06 8E-11 59.6 3.3 37 50-86 27-63 (257)
322 PRK13649 cbiO cobalt transport 98.1 3.2E-06 6.9E-11 60.7 2.9 36 50-85 29-64 (280)
323 PRK09473 oppD oligopeptide tra 98.1 5E-06 1.1E-10 61.3 4.0 37 50-86 38-77 (330)
324 KOG1969|consensus 98.1 9.1E-06 2E-10 64.8 5.6 37 55-92 327-363 (877)
325 TIGR02030 BchI-ChlI magnesium 98.1 1.2E-05 2.6E-10 59.5 6.0 47 20-80 5-51 (337)
326 COG2274 SunT ABC-type bacterio 98.1 4.4E-06 9.5E-11 67.1 3.9 47 43-89 486-534 (709)
327 cd03237 ABC_RNaseL_inhibitor_d 98.1 5.6E-06 1.2E-10 58.6 4.1 33 53-85 24-56 (246)
328 TIGR03740 galliderm_ABC gallid 98.0 3.8E-06 8.3E-11 58.3 3.2 36 50-85 22-57 (223)
329 cd01130 VirB11-like_ATPase Typ 98.0 1E-05 2.2E-10 54.8 5.2 32 51-82 22-53 (186)
330 cd02019 NK Nucleoside/nucleoti 98.0 5.7E-06 1.2E-10 47.4 3.4 22 57-78 2-23 (69)
331 TIGR03522 GldA_ABC_ATP gliding 98.0 1.2E-06 2.5E-11 63.7 0.6 36 50-85 24-59 (301)
332 PRK14965 DNA polymerase III su 98.0 9.8E-06 2.1E-10 63.8 5.8 48 20-80 17-64 (576)
333 PRK13537 nodulation ABC transp 98.0 1.1E-06 2.3E-11 64.1 0.4 35 51-85 30-64 (306)
334 TIGR03873 F420-0_ABC_ATP propo 98.0 3.8E-06 8.3E-11 59.5 3.2 36 50-85 23-58 (256)
335 PRK06526 transposase; Provisio 98.0 4E-06 8.8E-11 59.7 3.3 28 53-80 97-124 (254)
336 PRK11144 modC molybdate transp 98.0 3.5E-06 7.6E-11 62.6 3.1 37 49-85 19-55 (352)
337 PRK13635 cbiO cobalt transport 98.0 4E-06 8.7E-11 60.3 3.3 37 50-86 29-65 (279)
338 PRK10253 iron-enterobactin tra 98.0 4.1E-06 8.8E-11 59.7 3.3 37 50-86 29-65 (265)
339 PRK10070 glycine betaine trans 98.0 5.7E-06 1.2E-10 62.5 4.2 36 51-86 51-86 (400)
340 cd03369 ABCC_NFT1 Domain 2 of 98.0 5E-06 1.1E-10 57.1 3.6 37 50-86 30-66 (207)
341 PRK06762 hypothetical protein; 98.0 5.8E-06 1.3E-10 54.8 3.8 26 55-80 3-28 (166)
342 PRK00411 cdc6 cell division co 98.0 1.8E-05 4E-10 59.1 6.8 50 20-79 31-80 (394)
343 TIGR00972 3a0107s01c2 phosphat 98.0 4.5E-06 9.7E-11 58.8 3.3 32 50-81 23-54 (247)
344 PRK09544 znuC high-affinity zi 98.0 3.5E-06 7.7E-11 59.8 2.8 37 49-85 25-61 (251)
345 PRK02496 adk adenylate kinase; 98.0 4.8E-06 1E-10 56.2 3.3 26 56-81 3-28 (184)
346 TIGR01978 sufC FeS assembly AT 98.0 4.7E-06 1E-10 58.4 3.4 36 50-85 22-59 (243)
347 PRK06647 DNA polymerase III su 98.0 1.1E-05 2.4E-10 63.3 5.6 48 20-80 17-64 (563)
348 PRK13536 nodulation factor exp 98.0 1E-06 2.2E-11 65.2 -0.2 42 44-85 55-98 (340)
349 cd03300 ABC_PotA_N PotA is an 98.0 5.1E-06 1.1E-10 58.1 3.4 36 50-85 22-57 (232)
350 PRK10078 ribose 1,5-bisphospho 98.0 4.7E-06 1E-10 56.4 3.1 26 56-81 4-29 (186)
351 TIGR01351 adk adenylate kinase 98.0 5.5E-06 1.2E-10 57.2 3.4 26 57-82 2-27 (210)
352 PRK13547 hmuV hemin importer A 98.0 4.5E-06 9.8E-11 59.9 3.1 32 50-81 23-54 (272)
353 KOG1942|consensus 98.0 1.3E-05 2.8E-10 58.4 5.4 57 53-110 63-120 (456)
354 TIGR02142 modC_ABC molybdenum 98.0 4.5E-06 9.8E-11 62.0 3.2 37 49-85 18-54 (354)
355 PRK14528 adenylate kinase; Pro 98.0 6.5E-06 1.4E-10 55.9 3.7 27 56-82 3-29 (186)
356 PRK13546 teichoic acids export 98.0 4.6E-06 9.9E-11 59.7 3.1 41 45-85 39-81 (264)
357 COG1121 ZnuC ABC-type Mn/Zn tr 98.0 4.3E-06 9.2E-11 59.4 2.8 42 45-86 19-62 (254)
358 COG1131 CcmA ABC-type multidru 98.0 9.1E-07 2E-11 64.2 -0.6 42 44-85 19-62 (293)
359 TIGR00150 HI0065_YjeE ATPase, 98.0 1E-05 2.2E-10 52.3 4.3 30 52-81 20-49 (133)
360 TIGR00602 rad24 checkpoint pro 98.0 1.2E-05 2.6E-10 63.8 5.6 53 20-81 85-137 (637)
361 PRK00440 rfc replication facto 98.0 1.2E-05 2.6E-10 58.2 5.3 47 20-80 18-64 (319)
362 COG4987 CydC ABC-type transpor 98.0 1.1E-05 2.3E-10 62.5 5.1 61 35-95 343-405 (573)
363 PF01695 IstB_IS21: IstB-like 98.0 6.3E-06 1.4E-10 55.8 3.5 29 52-80 45-73 (178)
364 PRK05480 uridine/cytidine kina 98.0 1.1E-05 2.4E-10 55.5 4.7 27 54-80 6-32 (209)
365 PRK08154 anaerobic benzoate ca 98.0 1.5E-05 3.2E-10 58.3 5.6 33 51-83 130-162 (309)
366 PRK13639 cbiO cobalt transport 98.0 5E-06 1.1E-10 59.7 3.1 37 49-85 23-59 (275)
367 PHA00729 NTP-binding motif con 98.0 5.8E-06 1.3E-10 57.9 3.3 24 56-79 19-42 (226)
368 PRK14953 DNA polymerase III su 98.0 1.5E-05 3.1E-10 61.7 5.8 47 20-79 17-63 (486)
369 TIGR03258 PhnT 2-aminoethylpho 98.0 4.9E-06 1.1E-10 62.1 3.1 36 51-86 28-65 (362)
370 PRK13646 cbiO cobalt transport 98.0 5.3E-06 1.2E-10 59.9 3.2 42 45-86 22-65 (286)
371 PRK11231 fecE iron-dicitrate t 98.0 5.6E-06 1.2E-10 58.7 3.3 35 51-85 25-59 (255)
372 TIGR03797 NHPM_micro_ABC2 NHPM 98.0 6.2E-06 1.4E-10 65.9 3.9 46 44-89 467-514 (686)
373 PLN02674 adenylate kinase 98.0 1.5E-05 3.2E-10 56.5 5.4 38 54-94 31-68 (244)
374 PRK13637 cbiO cobalt transport 98.0 5.3E-06 1.2E-10 59.9 3.2 36 50-85 29-64 (287)
375 PF00910 RNA_helicase: RNA hel 98.0 6E-06 1.3E-10 51.2 3.0 23 57-79 1-23 (107)
376 PRK13644 cbiO cobalt transport 98.0 5.5E-06 1.2E-10 59.4 3.2 36 50-85 24-59 (274)
377 PRK13652 cbiO cobalt transport 98.0 5.4E-06 1.2E-10 59.5 3.2 36 51-86 27-62 (277)
378 PRK12377 putative replication 98.0 6.6E-06 1.4E-10 58.4 3.6 28 54-81 101-128 (248)
379 KOG3347|consensus 98.0 6.2E-06 1.3E-10 54.3 3.1 31 54-84 7-37 (176)
380 PRK13643 cbiO cobalt transport 98.0 5.4E-06 1.2E-10 59.9 3.1 36 51-86 29-64 (288)
381 PRK13531 regulatory ATPase Rav 98.0 9.5E-06 2.1E-10 62.5 4.6 30 51-80 36-65 (498)
382 TIGR02322 phosphon_PhnN phosph 98.0 6.9E-06 1.5E-10 55.1 3.4 25 56-80 3-27 (179)
383 PRK14948 DNA polymerase III su 98.0 1.6E-05 3.5E-10 63.1 6.0 48 20-80 17-64 (620)
384 PRK06921 hypothetical protein; 98.0 2.4E-05 5.3E-10 56.1 6.4 27 54-80 117-143 (266)
385 PRK07764 DNA polymerase III su 98.0 1.2E-05 2.6E-10 65.6 5.3 47 20-79 16-62 (824)
386 cd03299 ABC_ModC_like Archeal 98.0 5.8E-06 1.3E-10 57.9 3.1 36 50-85 21-56 (235)
387 PRK03731 aroL shikimate kinase 98.0 1.3E-05 2.8E-10 53.4 4.7 27 56-82 4-30 (171)
388 cd02023 UMPK Uridine monophosp 98.0 9.9E-06 2.1E-10 55.2 4.2 23 57-79 2-24 (198)
389 PRK05541 adenylylsulfate kinas 98.0 8.8E-06 1.9E-10 54.5 3.9 28 53-80 6-33 (176)
390 PRK11160 cysteine/glutathione 98.0 7.8E-06 1.7E-10 64.2 4.1 45 45-89 355-401 (574)
391 PF13191 AAA_16: AAA ATPase do 98.0 1.5E-05 3.2E-10 53.2 4.9 50 21-81 2-51 (185)
392 PRK00279 adk adenylate kinase; 98.0 6.7E-06 1.5E-10 56.9 3.3 34 57-93 3-36 (215)
393 PRK10418 nikD nickel transport 98.0 6.6E-06 1.4E-10 58.3 3.4 31 50-80 25-55 (254)
394 PRK14267 phosphate ABC transpo 98.0 6.6E-06 1.4E-10 58.1 3.4 31 50-80 26-56 (253)
395 TIGR01193 bacteriocin_ABC ABC- 98.0 7.7E-06 1.7E-10 65.6 4.1 45 44-88 488-534 (708)
396 PRK13633 cobalt transporter AT 98.0 6.2E-06 1.3E-10 59.3 3.2 41 45-85 25-67 (280)
397 cd03233 ABC_PDR_domain1 The pl 98.0 5.4E-06 1.2E-10 56.9 2.8 36 50-85 29-67 (202)
398 PRK09183 transposase/IS protei 98.0 7.1E-06 1.5E-10 58.6 3.5 28 53-80 101-128 (259)
399 PRK14247 phosphate ABC transpo 98.0 7.3E-06 1.6E-10 57.8 3.5 30 50-79 25-54 (250)
400 TIGR00968 3a0106s01 sulfate AB 98.0 6.8E-06 1.5E-10 57.6 3.3 36 50-85 22-57 (237)
401 TIGR02982 heterocyst_DevA ABC 98.0 1.1E-05 2.3E-10 56.0 4.2 36 51-86 28-63 (220)
402 PRK08181 transposase; Validate 98.0 6.4E-06 1.4E-10 59.2 3.1 28 53-80 105-132 (269)
403 PRK13641 cbiO cobalt transport 98.0 6.3E-06 1.4E-10 59.5 3.1 36 50-85 29-64 (287)
404 PRK08233 hypothetical protein; 98.0 7.4E-06 1.6E-10 54.7 3.2 25 56-80 5-29 (182)
405 cd00267 ABC_ATPase ABC (ATP-bi 98.0 7.3E-06 1.6E-10 53.9 3.1 37 50-86 21-57 (157)
406 cd03288 ABCC_SUR2 The SUR doma 98.0 1E-05 2.2E-10 57.5 4.1 42 45-86 36-79 (257)
407 TIGR03796 NHPM_micro_ABC1 NHPM 98.0 8.5E-06 1.8E-10 65.4 4.0 43 44-86 493-537 (710)
408 cd03217 ABC_FeS_Assembly ABC-t 98.0 8.3E-06 1.8E-10 55.9 3.5 37 50-86 22-60 (200)
409 PRK11022 dppD dipeptide transp 98.0 9.9E-06 2.1E-10 59.6 4.1 29 51-79 30-58 (326)
410 COG0410 LivF ABC-type branched 98.0 1.1E-05 2.3E-10 56.5 4.0 41 54-94 29-69 (237)
411 PRK13631 cbiO cobalt transport 98.0 7.1E-06 1.5E-10 60.3 3.3 42 45-86 41-84 (320)
412 PRK14235 phosphate transporter 98.0 8.9E-06 1.9E-10 58.1 3.7 31 50-80 41-71 (267)
413 PRK14242 phosphate transporter 98.0 8.6E-06 1.9E-10 57.6 3.6 30 50-79 28-57 (253)
414 cd03291 ABCC_CFTR1 The CFTR su 98.0 7.5E-06 1.6E-10 59.1 3.3 41 45-85 52-94 (282)
415 PRK00300 gmk guanylate kinase; 97.9 9.8E-06 2.1E-10 55.4 3.7 27 53-79 4-30 (205)
416 PRK13634 cbiO cobalt transport 97.9 7.6E-06 1.6E-10 59.2 3.2 36 50-85 29-64 (290)
417 PRK15093 antimicrobial peptide 97.9 1.2E-05 2.5E-10 59.3 4.3 30 50-79 29-58 (330)
418 cd03236 ABC_RNaseL_inhibitor_d 97.9 1E-05 2.2E-10 57.6 3.8 34 52-85 24-57 (255)
419 PF00485 PRK: Phosphoribulokin 97.9 1.1E-05 2.4E-10 55.0 3.8 25 57-81 2-26 (194)
420 PRK14959 DNA polymerase III su 97.9 1.7E-05 3.8E-10 62.7 5.4 48 20-80 17-64 (624)
421 PRK14262 phosphate ABC transpo 97.9 8.9E-06 1.9E-10 57.4 3.5 30 50-79 25-54 (250)
422 PRK14529 adenylate kinase; Pro 97.9 1.8E-05 4E-10 55.4 5.0 28 56-83 2-29 (223)
423 cd00820 PEPCK_HprK Phosphoenol 97.9 7.4E-06 1.6E-10 51.1 2.7 25 51-75 12-36 (107)
424 PRK09825 idnK D-gluconate kina 97.9 1.1E-05 2.4E-10 54.4 3.7 27 55-81 4-30 (176)
425 COG4555 NatA ABC-type Na+ tran 97.9 4.7E-06 1E-10 57.5 1.9 40 47-86 19-60 (245)
426 PRK10790 putative multidrug tr 97.9 9.9E-06 2.2E-10 63.7 4.0 44 45-88 356-401 (592)
427 PRK13651 cobalt transporter AT 97.9 7.1E-06 1.5E-10 59.9 3.0 35 51-85 30-64 (305)
428 PRK13642 cbiO cobalt transport 97.9 8.7E-06 1.9E-10 58.5 3.4 36 50-85 29-64 (277)
429 PRK13975 thymidylate kinase; P 97.9 4.1E-05 8.8E-10 51.9 6.5 26 56-81 4-29 (196)
430 COG1484 DnaC DNA replication p 97.9 4E-05 8.7E-10 54.6 6.7 29 53-81 104-132 (254)
431 PRK11174 cysteine/glutathione 97.9 9.3E-06 2E-10 63.8 3.8 41 45-86 365-407 (588)
432 TIGR02857 CydD thiol reductant 97.9 1E-05 2.3E-10 62.7 4.0 42 45-86 337-380 (529)
433 PLN02199 shikimate kinase 97.9 1.8E-05 3.9E-10 57.5 4.9 38 54-94 102-139 (303)
434 PRK13640 cbiO cobalt transport 97.9 9E-06 2E-10 58.6 3.4 38 45-82 22-61 (282)
435 TIGR00958 3a01208 Conjugate Tr 97.9 1.2E-05 2.6E-10 64.7 4.4 42 45-86 496-539 (711)
436 cd00071 GMPK Guanosine monopho 97.9 1.2E-05 2.5E-10 52.2 3.5 25 57-81 2-26 (137)
437 PRK10762 D-ribose transporter 97.9 7.7E-06 1.7E-10 63.2 3.1 37 50-86 26-62 (501)
438 TIGR02203 MsbA_lipidA lipid A 97.9 1.4E-05 3E-10 62.5 4.5 44 45-88 347-392 (571)
439 COG0411 LivG ABC-type branched 97.9 1.1E-06 2.4E-11 61.8 -1.5 60 51-110 27-88 (250)
440 PRK13636 cbiO cobalt transport 97.9 9.2E-06 2E-10 58.5 3.2 36 50-85 28-63 (283)
441 PRK14238 phosphate transporter 97.9 1.2E-05 2.5E-10 57.7 3.7 35 45-79 39-75 (271)
442 PRK10744 pstB phosphate transp 97.9 1.1E-05 2.3E-10 57.4 3.4 30 50-79 35-64 (260)
443 TIGR02204 MsbA_rel ABC transpo 97.9 1.4E-05 3.1E-10 62.5 4.4 42 45-86 355-398 (576)
444 TIGR03375 type_I_sec_LssB type 97.9 1.2E-05 2.5E-10 64.5 4.0 43 45-87 480-524 (694)
445 PRK10789 putative multidrug tr 97.9 1.3E-05 2.9E-10 62.8 4.2 42 45-86 330-373 (569)
446 TIGR02903 spore_lon_C ATP-depe 97.9 2.1E-05 4.5E-10 62.5 5.3 45 20-78 155-199 (615)
447 COG4178 ABC-type uncharacteriz 97.9 1.1E-05 2.4E-10 63.4 3.7 40 49-88 414-453 (604)
448 PRK14273 phosphate ABC transpo 97.9 1.2E-05 2.5E-10 56.9 3.5 31 50-80 29-59 (254)
449 PRK14248 phosphate ABC transpo 97.9 1.2E-05 2.6E-10 57.4 3.6 29 50-78 43-71 (268)
450 cd01672 TMPK Thymidine monopho 97.9 1.9E-05 4.1E-10 53.2 4.4 24 57-80 3-26 (200)
451 PRK13657 cyclic beta-1,2-gluca 97.9 1.2E-05 2.7E-10 63.2 3.9 41 45-85 350-392 (588)
452 PRK09536 btuD corrinoid ABC tr 97.9 1.1E-05 2.3E-10 61.1 3.4 36 51-86 26-61 (402)
453 TIGR03415 ABC_choXWV_ATP choli 97.9 1.5E-05 3.2E-10 60.0 4.1 36 53-88 49-84 (382)
454 CHL00131 ycf16 sulfate ABC tra 97.9 1E-05 2.2E-10 57.1 3.1 36 50-85 29-66 (252)
455 PRK09700 D-allose transporter 97.9 9E-06 2E-10 62.9 3.0 41 45-85 20-62 (510)
456 PRK14251 phosphate ABC transpo 97.9 1.3E-05 2.7E-10 56.6 3.5 30 50-79 26-55 (251)
457 PRK14241 phosphate transporter 97.9 1.1E-05 2.5E-10 57.2 3.2 30 50-79 26-55 (258)
458 PRK14246 phosphate ABC transpo 97.9 1.1E-05 2.3E-10 57.4 3.1 40 44-83 24-65 (257)
459 cd03232 ABC_PDR_domain2 The pl 97.9 1E-05 2.2E-10 55.0 2.9 36 50-85 29-66 (192)
460 PRK08939 primosomal protein Dn 97.9 1.5E-05 3.1E-10 58.3 3.8 28 53-80 155-182 (306)
461 PRK09984 phosphonate/organopho 97.9 1.2E-05 2.6E-10 57.2 3.3 32 50-81 26-57 (262)
462 PRK10938 putative molybdenum t 97.9 9.7E-06 2.1E-10 62.4 3.0 37 50-86 25-61 (490)
463 PRK10636 putative ABC transpor 97.9 9.8E-06 2.1E-10 64.5 3.1 42 45-86 16-59 (638)
464 PRK10522 multidrug transporter 97.9 1.3E-05 2.8E-10 62.6 3.7 42 45-86 338-381 (547)
465 PRK08116 hypothetical protein; 97.9 1.3E-05 2.8E-10 57.5 3.5 26 54-79 114-139 (268)
466 PRK04182 cytidylate kinase; Pr 97.9 1.3E-05 2.9E-10 53.4 3.3 26 57-82 3-28 (180)
467 PRK09700 D-allose transporter 97.9 1E-05 2.2E-10 62.7 3.1 42 45-86 278-321 (510)
468 PF00406 ADK: Adenylate kinase 97.9 7.9E-06 1.7E-10 53.5 2.1 34 59-95 1-34 (151)
469 PRK08451 DNA polymerase III su 97.9 3E-05 6.5E-10 60.5 5.6 47 20-79 15-61 (535)
470 PRK14259 phosphate ABC transpo 97.9 1.3E-05 2.8E-10 57.4 3.3 30 50-79 35-64 (269)
471 PRK14272 phosphate ABC transpo 97.9 1.4E-05 3E-10 56.4 3.4 36 45-80 19-56 (252)
472 PRK14269 phosphate ABC transpo 97.9 1.4E-05 3.1E-10 56.3 3.4 30 50-79 24-53 (246)
473 TIGR01842 type_I_sec_PrtD type 97.9 1.5E-05 3.3E-10 62.1 3.9 41 45-85 333-375 (544)
474 PRK14270 phosphate ABC transpo 97.9 1.6E-05 3.5E-10 56.1 3.7 30 50-79 26-55 (251)
475 cd03283 ABC_MutS-like MutS-lik 97.9 1.1E-05 2.3E-10 55.5 2.7 32 47-78 18-49 (199)
476 PRK14237 phosphate transporter 97.9 1.5E-05 3.2E-10 56.9 3.5 35 45-79 35-71 (267)
477 PRK14253 phosphate ABC transpo 97.9 1.7E-05 3.7E-10 55.9 3.8 31 50-80 25-55 (249)
478 PRK09580 sufC cysteine desulfu 97.9 1.2E-05 2.6E-10 56.6 3.0 36 50-85 23-60 (248)
479 COG0488 Uup ATPase components 97.9 1.5E-05 3.2E-10 62.2 3.7 54 45-98 337-392 (530)
480 cd03238 ABC_UvrA The excision 97.9 1.1E-05 2.4E-10 54.5 2.6 27 50-76 17-43 (176)
481 TIGR03574 selen_PSTK L-seryl-t 97.9 5.2E-05 1.1E-09 53.6 6.2 24 57-80 2-25 (249)
482 PF06309 Torsin: Torsin; Inte 97.9 4.6E-05 1E-09 48.8 5.3 22 57-78 56-77 (127)
483 COG4778 PhnL ABC-type phosphon 97.9 2.8E-05 6.1E-10 52.6 4.5 37 49-85 32-68 (235)
484 PRK15064 ABC transporter ATP-b 97.9 1.1E-05 2.4E-10 62.8 3.0 41 45-85 16-58 (530)
485 PRK06835 DNA replication prote 97.9 2.5E-05 5.3E-10 57.7 4.6 27 54-80 183-209 (329)
486 PRK14240 phosphate transporter 97.9 1.5E-05 3.2E-10 56.2 3.3 30 50-79 25-54 (250)
487 COG1132 MdlB ABC-type multidru 97.8 1.9E-05 4.2E-10 61.8 4.2 46 44-89 343-390 (567)
488 PRK14263 phosphate ABC transpo 97.8 1.5E-05 3.2E-10 56.8 3.3 31 50-80 30-60 (261)
489 PRK14274 phosphate ABC transpo 97.8 1.2E-05 2.6E-10 57.1 2.8 30 50-79 34-63 (259)
490 PF13401 AAA_22: AAA domain; P 97.8 1.6E-05 3.5E-10 50.3 3.1 26 54-79 4-29 (131)
491 PRK11819 putative ABC transpor 97.8 1.2E-05 2.5E-10 63.1 2.9 41 45-85 22-64 (556)
492 PRK14244 phosphate ABC transpo 97.8 1.8E-05 3.8E-10 55.9 3.6 29 51-79 28-56 (251)
493 PRK11147 ABC transporter ATPas 97.8 1E-05 2.2E-10 64.4 2.6 42 45-86 18-61 (635)
494 cd01120 RecA-like_NTPases RecA 97.8 2.3E-05 5E-10 50.8 3.9 24 57-80 2-25 (165)
495 PRK14236 phosphate transporter 97.8 1.7E-05 3.7E-10 56.8 3.5 30 50-79 47-76 (272)
496 PRK15439 autoinducer 2 ABC tra 97.8 1.2E-05 2.7E-10 62.2 3.0 42 45-86 26-69 (510)
497 PRK10261 glutathione transport 97.8 2E-05 4.3E-10 62.6 4.2 43 45-87 339-383 (623)
498 TIGR00368 Mg chelatase-related 97.8 3E-05 6.5E-10 60.1 5.1 29 53-81 210-238 (499)
499 KOG0060|consensus 97.8 1.6E-05 3.5E-10 62.0 3.5 35 51-85 458-492 (659)
500 KOG0058|consensus 97.8 2.8E-05 6.1E-10 61.9 4.9 59 36-94 473-534 (716)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-30 Score=188.60 Aligned_cols=105 Identities=39% Similarity=0.685 Sum_probs=99.4
Q ss_pred ccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 9 IISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 9 ~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
-..|++.|+ ||||+++|++++ ++.+++|+.+|++|+++|+.||+|||||||||||||+||||+|++.+..|+. +.+
T Consensus 143 ~e~PdvtY~--dIGGL~~Qi~Ei-rE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr-vvg 218 (406)
T COG1222 143 EEKPDVTYE--DIGGLDEQIQEI-REVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR-VVG 218 (406)
T ss_pred ccCCCCChh--hccCHHHHHHHH-HHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE-ecc
Confidence 356788888 599999999999 9999999999999999999999999999999999999999999999999877 789
Q ss_pred cccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 89 PQVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++++.+|.|+..+.+|++|+.|++++|++
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsI 247 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSI 247 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeE
Confidence 99999999999999999999999999875
No 2
>KOG0730|consensus
Probab=99.93 E-value=1.5e-26 Score=177.38 Aligned_cols=104 Identities=35% Similarity=0.629 Sum_probs=97.2
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|.++|+ ||||+++.++++ ++.+.+++.+++.|.++|+++++|||||||||||||++||++|++.+.+|+. +.+.
T Consensus 427 e~p~v~W~--dIGGlE~lK~el-q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls-vkgp 502 (693)
T KOG0730|consen 427 EMPNVSWD--DIGGLEELKREL-QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS-VKGP 502 (693)
T ss_pred cCCCCChh--hccCHHHHHHHH-HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee-ccCH
Confidence 44666666 699999999998 9999999999999999999999999999999999999999999999999887 8999
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++|+.++++|+.||+.+|.+
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~aP~I 530 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQVAPCI 530 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhcCCeE
Confidence 9999999999999999999999998854
No 3
>KOG0727|consensus
Probab=99.93 E-value=4.2e-26 Score=159.99 Aligned_cols=104 Identities=35% Similarity=0.616 Sum_probs=97.4
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|. ||||+|-+++++ ++.++.|+.+.++|+++|++||+|++++||||||||++++++|+.....|+. +.++
T Consensus 148 ekpdvsy~--diggld~qkqei-reavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir-vvgs 223 (408)
T KOG0727|consen 148 EKPDVSYA--DIGGLDVQKQEI-REAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR-VVGS 223 (408)
T ss_pred CCCCcccc--ccccchhhHHHH-HHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee-eccH
Confidence 45667776 699999999999 9999999999999999999999999999999999999999999999998777 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+++.+|.|+..+.+|.+|..|++++|++
T Consensus 224 efvqkylgegprmvrdvfrlakenapsi 251 (408)
T KOG0727|consen 224 EFVQKYLGEGPRMVRDVFRLAKENAPSI 251 (408)
T ss_pred HHHHHHhccCcHHHHHHHHHHhccCCcE
Confidence 9999999999999999999999999875
No 4
>KOG0733|consensus
Probab=99.93 E-value=7.4e-26 Score=172.72 Aligned_cols=104 Identities=36% Similarity=0.625 Sum_probs=97.1
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||||++++..++ ...+.+|+.+++.|+.+|+++|.||||+||||||||.+|||+|++.+.+|+. +.++
T Consensus 504 tVPdVtW~--dIGaL~~vR~eL-~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis-VKGP 579 (802)
T KOG0733|consen 504 TVPDVTWD--DIGALEEVRLEL-NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS-VKGP 579 (802)
T ss_pred ecCCCChh--hcccHHHHHHHH-HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe-ecCH
Confidence 44666666 699999999998 9999999999999999999999999999999999999999999999999887 8999
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+++.+|+||+|+.+|.+|+.||..+|-|
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASAPCV 607 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCCCeE
Confidence 9999999999999999999999998754
No 5
>KOG0726|consensus
Probab=99.92 E-value=3.2e-25 Score=157.89 Aligned_cols=102 Identities=35% Similarity=0.650 Sum_probs=96.0
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
|...|. ||||++++++++ ++.+++|+.||++|+.+|+.+|+||+|||+||||||.||+|+|+.....|+. +-++++
T Consensus 180 P~Ety~--diGGle~QiQEi-KEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlR-vvGseL 255 (440)
T KOG0726|consen 180 PQETYA--DIGGLESQIQEI-KESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLR-VVGSEL 255 (440)
T ss_pred chhhhc--ccccHHHHHHHH-HHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhh-hhhHHH
Confidence 444555 699999999999 9999999999999999999999999999999999999999999999999887 679999
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+.+|.|+..+.+|++|+.|.+++|++
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSI 281 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSI 281 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCce
Confidence 99999999999999999999999975
No 6
>KOG0741|consensus
Probab=99.92 E-value=1.5e-24 Score=163.77 Aligned_cols=114 Identities=79% Similarity=1.309 Sum_probs=109.0
Q ss_pred CccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 6 ~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...+.+|+|+|+++.|||||+....++++.+.....+|++.+++|+...+|++|+||||||||.+||.|...++.....+
T Consensus 208 ~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI 287 (744)
T KOG0741|consen 208 SNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI 287 (744)
T ss_pred hccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ecCcccchhhhchhHHHHHHHHHHHHHHHHhhhc
Q psy3632 86 VNGPQVLDKYVGESEANVRRLFADAEEEEKRVSH 119 (121)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~~ 119 (121)
+++++++.+|+|++|.++|.+|.+|++..++.+.
T Consensus 288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~ 321 (744)
T KOG0741|consen 288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGA 321 (744)
T ss_pred cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCc
Confidence 9999999999999999999999999999887654
No 7
>KOG0733|consensus
Probab=99.91 E-value=6.2e-25 Score=167.72 Aligned_cols=100 Identities=34% Similarity=0.606 Sum_probs=91.1
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
.+.|+ +|||+|+++.++ .+.+.. +.+|+.|..+|+.|++|+|||||||||||+||+++|++++.+++. +...+++
T Consensus 186 nv~f~--diGG~d~~~~el-~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~-isApeiv 260 (802)
T KOG0733|consen 186 NVSFS--DIGGLDKTLAEL-CELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS-ISAPEIV 260 (802)
T ss_pred Ccchh--hccChHHHHHHH-HHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEe-ecchhhh
Confidence 45555 699999999998 555555 889999999999999999999999999999999999999999887 8899999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 93 DKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+++.|++|++||++|++|..++|.+
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeE
Confidence 9999999999999999999988753
No 8
>KOG0736|consensus
Probab=99.90 E-value=2.4e-24 Score=167.55 Aligned_cols=102 Identities=39% Similarity=0.644 Sum_probs=92.4
Q ss_pred cccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 8 SIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 8 ~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
++.+..|+ ||||+++.+.++ .+.+..|+.|++++.. |++.+.||+||||||||||.+|||+|.++...|+. +.
T Consensus 665 KIPnV~Wd----DVGGLeevK~eI-ldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS-VK 737 (953)
T KOG0736|consen 665 KIPNVSWD----DVGGLEEVKTEI-LDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS-VK 737 (953)
T ss_pred CCCccchh----cccCHHHHHHHH-HHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEe-ec
Confidence 34444444 799999999998 8999999999999985 78888999999999999999999999999999888 89
Q ss_pred CcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 88 GPQVLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+++++-+|+|++|+++|++|+.||+.+|=
T Consensus 738 GPELLNMYVGqSE~NVR~VFerAR~A~PC 766 (953)
T KOG0736|consen 738 GPELLNMYVGQSEENVREVFERARSAAPC 766 (953)
T ss_pred CHHHHHHHhcchHHHHHHHHHHhhccCCe
Confidence 99999999999999999999999998763
No 9
>KOG0728|consensus
Probab=99.89 E-value=2.2e-23 Score=146.23 Aligned_cols=95 Identities=43% Similarity=0.748 Sum_probs=91.7
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhH
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESE 100 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (121)
+||+|.+++++ ++.+++|..+|++|+.+|+..|+|++|+||||+|||.+|+++|......++. +++++++.+|.|+..
T Consensus 149 iGgLd~QIkeI-kEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fir-vsgselvqk~igegs 226 (404)
T KOG0728|consen 149 IGGLDKQIKEI-KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGS 226 (404)
T ss_pred hccHHHHHHHH-HHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEE-echHHHHHHHhhhhH
Confidence 89999999999 9999999999999999999999999999999999999999999999988766 899999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy3632 101 ANVRRLFADAEEEEKRV 117 (121)
Q Consensus 101 ~~i~~~f~~a~~~~~~~ 117 (121)
+.+|++|-+||+++|++
T Consensus 227 rmvrelfvmarehapsi 243 (404)
T KOG0728|consen 227 RMVRELFVMAREHAPSI 243 (404)
T ss_pred HHHHHHHHHHHhcCCce
Confidence 99999999999999975
No 10
>KOG0729|consensus
Probab=99.87 E-value=3.5e-22 Score=141.26 Aligned_cols=100 Identities=37% Similarity=0.640 Sum_probs=92.9
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ |+||-.+++..+ ++.++.++.+|+.|-++|+++|+|++++||||||||.+||++|+..+..|+. +.++
T Consensus 170 ekpdvty~--dvggckeqiekl-revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfir-vigs 245 (435)
T KOG0729|consen 170 EKPDVTYS--DVGGCKEQIEKL-REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIR-VIGS 245 (435)
T ss_pred cCCCcccc--cccchHHHHHHH-HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEe-ehhH
Confidence 34666666 699999999998 9999999999999999999999999999999999999999999999998776 6799
Q ss_pred ccchhhhchhHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
+++.+|+|+..+.+|++|++||..
T Consensus 246 elvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhccc
Confidence 999999999999999999999865
No 11
>KOG0739|consensus
Probab=99.87 E-value=3e-22 Score=143.13 Aligned_cols=106 Identities=29% Similarity=0.501 Sum_probs=95.0
Q ss_pred ccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 7 QSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 7 ~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.-+..|.+.|+ |+.||+..++.+ ++.+.+|+.-|++|.. ...|=+|+||+||||||||.||+++|.+.+..|+. +
T Consensus 123 Iv~EKPNVkWs--DVAGLE~AKeAL-KEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS-v 197 (439)
T KOG0739|consen 123 IVREKPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS-V 197 (439)
T ss_pred hhccCCCCchh--hhccchhHHHHH-HhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE-e
Confidence 34567888888 599999999988 9999999999999885 33556789999999999999999999999988877 7
Q ss_pred cCcccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 87 NGPQVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+.++++++|.|++++.++.+|++||++.|++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSI 228 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcE
Confidence 8999999999999999999999999999875
No 12
>KOG0652|consensus
Probab=99.86 E-value=6.3e-22 Score=139.64 Aligned_cols=104 Identities=39% Similarity=0.640 Sum_probs=96.8
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|+..|+ ||||++++++++ .+.+.+++.+++.|+++|+.+|+|++++||||||||.+||+-|.+.+..|.. +.++
T Consensus 164 ekPtE~Ys--DiGGldkQIqEL-vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-LAgP 239 (424)
T KOG0652|consen 164 EKPTEQYS--DIGGLDKQIQEL-VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-LAGP 239 (424)
T ss_pred cCCccccc--ccccHHHHHHHH-HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-hcch
Confidence 45666777 599999999998 8899999999999999999999999999999999999999999999999887 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+++..|.|+..+.+|..|..|.+.+|.+
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~I 267 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTI 267 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeE
Confidence 9999999999999999999999998864
No 13
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.84 E-value=4e-21 Score=143.55 Aligned_cols=103 Identities=38% Similarity=0.640 Sum_probs=93.5
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++.+++++ ++.+..++.+++.|+++|+.++++++|+||||||||++++++|+.++.+++. +.+.
T Consensus 138 ~~p~v~~~--digGl~~~k~~l-~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~-i~~s 213 (398)
T PTZ00454 138 EKPDVTYS--DIGGLDIQKQEI-REAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR-VVGS 213 (398)
T ss_pred CCCCCCHH--HcCCHHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE-EehH
Confidence 45667777 699999999999 9999999999999999999999999999999999999999999999988766 5677
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
++...|.|++++.++++|+.|+..+|.
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~~~P~ 240 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARENAPS 240 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHhcCCe
Confidence 888899999999999999999887664
No 14
>KOG0731|consensus
Probab=99.84 E-value=3.8e-21 Score=150.76 Aligned_cols=100 Identities=32% Similarity=0.559 Sum_probs=91.8
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
.+.|. |+.|.|+++.++ .| +..++.+|+.|.++|...|+|+||+||||||||+||||+|++.+.+|+. +++++++
T Consensus 307 ~V~Fk--DVAG~deAK~El-~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s-vSGSEFv 381 (774)
T KOG0731|consen 307 GVKFK--DVAGVDEAKEEL-ME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-VSGSEFV 381 (774)
T ss_pred CCccc--cccCcHHHHHHH-HH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceee-echHHHH
Confidence 35566 699999999998 54 4578899999999999999999999999999999999999999999887 8999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 93 DKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
..+.|-...++|.+|+.|+.++|.+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~i 406 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSI 406 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeE
Confidence 9999999999999999999999864
No 15
>KOG0738|consensus
Probab=99.84 E-value=6.9e-21 Score=139.65 Aligned_cols=102 Identities=30% Similarity=0.494 Sum_probs=90.8
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
+|.+.|+ ||.|+.+.++-+ ++.+..|+.-|+.|+.+. +|=+|||++||||||||+||+|+|.+++..|+. ++.+.
T Consensus 206 np~ikW~--DIagl~~AK~lL-~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN-VSsst 280 (491)
T KOG0738|consen 206 NPNIKWD--DIAGLHEAKKLL-KEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN-VSSST 280 (491)
T ss_pred CCCcChH--hhcchHHHHHHH-HHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE-echhh
Confidence 4455555 699999987765 999999999999999765 555789999999999999999999999999877 78999
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+.++|=|++|+.+|-+|++||..+|+.
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPSt 307 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPST 307 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCce
Confidence 999999999999999999999999874
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.7e-20 Score=143.53 Aligned_cols=104 Identities=38% Similarity=0.666 Sum_probs=93.7
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..+.+.|+ +++|++..+..+ ++.+.+++..++.+...++.++.|+||+||||||||++|+++|.+++.+++. +..+
T Consensus 235 ~~~~v~~~--diggl~~~k~~l-~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~-v~~~ 310 (494)
T COG0464 235 EDEDVTLD--DIGGLEEAKEEL-KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS-VKGS 310 (494)
T ss_pred CCCCccee--hhhcHHHHHHHH-HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE-eeCH
Confidence 44555555 699999988888 9999999999999999999999999999999999999999999999999877 5666
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|+++++++++|+.|++.+|.+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcE
Confidence 9999999999999999999999887654
No 17
>KOG0737|consensus
Probab=99.82 E-value=3.7e-20 Score=134.81 Aligned_cols=103 Identities=30% Similarity=0.461 Sum_probs=91.5
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhC-CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLG-CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+++.+..||+|++.+++++ ++.+..|++.|++|...+ +.+++||||+||||||||++|+++|++.+..++. +..+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L-~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn-v~~s~l 163 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDAL-QELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN-VSVSNL 163 (386)
T ss_pred hceeehhhccchHHHHHHH-HHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce-eecccc
Confidence 4555555899999999998 999999999999997644 4678899999999999999999999999999887 788999
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
.++|+|+.++.++.+|-.|.+-.|.+
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~i 189 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSI 189 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcce
Confidence 99999999999999999999776653
No 18
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=5.3e-20 Score=138.74 Aligned_cols=102 Identities=36% Similarity=0.675 Sum_probs=91.7
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|...|+ ||+|++++++++ ++.+..++.+++.|+.+++.++.+++|+||||||||++|+++|++++.+++. +.+++
T Consensus 177 ~p~~~~~--DIgGl~~qi~~l-~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~-V~~se 252 (438)
T PTZ00361 177 APLESYA--DIGGLEQQIQEI-KEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR-VVGSE 252 (438)
T ss_pred CCCCCHH--HhcCHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE-Eecch
Confidence 3455666 699999999999 9999999999999999999999999999999999999999999999988766 67788
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+...|.|+.++.++.+|+.|+...+.
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ 278 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPS 278 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCc
Confidence 88999999999999999999887653
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.81 E-value=6.1e-20 Score=137.07 Aligned_cols=102 Identities=39% Similarity=0.709 Sum_probs=92.0
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|++.|+ +|+|++++++++ ++.+..++.+++.++.+|+.++++++|+||||||||++|+++|..++.+++. +.+++
T Consensus 125 ~p~~~~~--di~Gl~~~~~~l-~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~-v~~~~ 200 (389)
T PRK03992 125 SPNVTYE--DIGGLEEQIREV-REAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR-VVGSE 200 (389)
T ss_pred CCCCCHH--HhCCcHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE-eehHH
Confidence 4556665 699999999998 9999999999999999999999999999999999999999999999988665 67888
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+...|.|++++.++.+|+.|+.+.+.
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~ 226 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPS 226 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCe
Confidence 88999999999999999999886654
No 20
>KOG0734|consensus
Probab=99.80 E-value=8e-20 Score=138.48 Aligned_cols=100 Identities=30% Similarity=0.489 Sum_probs=90.9
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
.+.|+ |+-|.|+.++++ +-+..++++|+-|.++|=..|+||||+||||||||+||||+|++.+.+|+. ..++++-
T Consensus 300 nv~F~--dVkG~DEAK~EL--eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~-~sGSEFd 374 (752)
T KOG0734|consen 300 NVTFE--DVKGVDEAKQEL--EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY-ASGSEFD 374 (752)
T ss_pred ccccc--cccChHHHHHHH--HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe-ccccchh
Confidence 45566 699999999998 455678889999999999999999999999999999999999999999887 7899999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 93 DKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
..++|-..+++|++|+.|++.+|.+
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcI 399 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCI 399 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999999998754
No 21
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=1.7e-19 Score=143.55 Aligned_cols=102 Identities=38% Similarity=0.709 Sum_probs=92.7
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
|.+.|+ +++|++..++++ ++.+.+++.+++.++++++.++.|++|+||||||||++|+++|++++.+++. +.++++
T Consensus 448 ~~~~~~--di~g~~~~k~~l-~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~-v~~~~l 523 (733)
T TIGR01243 448 PNVRWS--DIGGLEEVKQEL-REAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIA-VRGPEI 523 (733)
T ss_pred cccchh--hcccHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE-EehHHH
Confidence 445555 699999999988 8999999999999999999999999999999999999999999999998765 788999
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
.++|+|++++.++++|+.|++.++.+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~~p~i 549 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQAAPAI 549 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhcCCEE
Confidence 99999999999999999999987654
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.79 E-value=3e-19 Score=136.59 Aligned_cols=101 Identities=40% Similarity=0.728 Sum_probs=87.8
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC--------
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE-------- 82 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~-------- 82 (121)
.|++.|+ +|+|++++++++ ++.+..++.+++.|+.+++.+++|++|+||||||||++++++|+.+..+.
T Consensus 176 ~p~v~~~--dIgGl~~~i~~i-~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 176 VPDVTYA--DIGGLDSQIEQI-RDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred CCCCCHH--HcCChHHHHHHH-HHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 3566666 599999999998 88999999999999999999999999999999999999999999986541
Q ss_pred -CeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 83 -PKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
+..+..++++.+|.+++++.++.+|+.|++.+
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a 285 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKA 285 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHh
Confidence 11245677888999999999999999998864
No 23
>KOG0651|consensus
Probab=99.78 E-value=3.4e-19 Score=127.74 Aligned_cols=99 Identities=36% Similarity=0.617 Sum_probs=92.0
Q ss_pred CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
.+|+ .++|+-.++.++ ++.++.++.+++++.++|+.+|.+++||||||+|||.+|+++|..++..++. +..+.+++
T Consensus 129 ~s~~--~~ggl~~qirel-re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~-v~ss~lv~ 204 (388)
T KOG0651|consen 129 ISFE--NVGGLFYQIREL-REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK-VVSSALVD 204 (388)
T ss_pred cCHH--HhCChHHHHHHH-HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE-eeHhhhhh
Confidence 3455 599999999998 9999999999999999999999999999999999999999999999999876 67889999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHh
Q psy3632 94 KYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 94 ~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+|.||+.+.||+.|..|+++.+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pc 227 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPC 227 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCce
Confidence 99999999999999999998763
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.76 E-value=1.7e-18 Score=128.24 Aligned_cols=102 Identities=39% Similarity=0.708 Sum_probs=90.4
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|.+.|+ +|+|++++++++ ++.+..++.+++.+..+|+.++.+++|+||||||||++++++|+.++.+++. +...+
T Consensus 116 ~p~~~~~--di~Gl~~~~~~l-~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~-v~~~~ 191 (364)
T TIGR01242 116 RPNVSYE--DIGGLEEQIREI-REAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR-VVGSE 191 (364)
T ss_pred CCCCCHH--HhCChHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe-cchHH
Confidence 4556665 699999999998 8899999999999999999999999999999999999999999999988665 56777
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+...+.++....++.+|+.|+...+.
T Consensus 192 l~~~~~g~~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 192 LVRKYIGEGARLVREIFELAKEKAPS 217 (364)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCCc
Confidence 88889999999999999999876553
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.76 E-value=7.7e-19 Score=123.72 Aligned_cols=98 Identities=22% Similarity=0.421 Sum_probs=85.9
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
++..|+ |+.|.+..++.. +.+..++.+|+.|..| .|++|||+||||||||++|+++|++...+++. +...++
T Consensus 116 ~~it~d--dViGqEeAK~kc--rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~-vkat~l 187 (368)
T COG1223 116 SDITLD--DVIGQEEAKRKC--RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLL-VKATEL 187 (368)
T ss_pred ccccHh--hhhchHHHHHHH--HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEE-echHHH
Confidence 444555 699999998886 6677788899988877 48899999999999999999999999999665 889999
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+..+.++++|+.|++.+|.+
T Consensus 188 iGehVGdgar~Ihely~rA~~~aPci 213 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKAAPCI 213 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999998754
No 26
>KOG0735|consensus
Probab=99.75 E-value=2.3e-18 Score=133.82 Aligned_cols=98 Identities=38% Similarity=0.599 Sum_probs=90.6
Q ss_pred CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
..|+ ||+||.++++.+ .+.+.+|.+.+.+|.+..++.+.||+|+||||||||.+|.++|...+..++. +.++++.+
T Consensus 664 i~w~--digg~~~~k~~l-~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis-vKGPElL~ 739 (952)
T KOG0735|consen 664 IRWE--DIGGLFEAKKVL-EEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS-VKGPELLS 739 (952)
T ss_pred CCce--ecccHHHHHHHH-HHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE-ecCHHHHH
Confidence 4444 699999988876 9999999999999999999999999999999999999999999999999776 89999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHH
Q psy3632 94 KYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 94 ~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
+|.|.+|.++|.+|..|+..+|
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKP 761 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCC
Confidence 9999999999999999998765
No 27
>KOG0740|consensus
Probab=99.74 E-value=2.1e-18 Score=128.62 Aligned_cols=99 Identities=34% Similarity=0.542 Sum_probs=89.4
Q ss_pred ccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632 16 FNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY 95 (121)
Q Consensus 16 ~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 95 (121)
+...|++|+++.++.+ .+.+.+++..++++..+. .+.+++||.||||+|||+|++|+|.+.+..++. ++.+++.++|
T Consensus 150 v~~~di~gl~~~k~~l-~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~-iSassLtsK~ 226 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSL-KEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN-ISASSLTSKY 226 (428)
T ss_pred ccccCCcchhhHHHHh-hhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee-ccHHHhhhhc
Confidence 3333799999988877 999999999999998765 557799999999999999999999999999887 8899999999
Q ss_pred hchhHHHHHHHHHHHHHHHHhh
Q psy3632 96 VGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 96 ~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+|+.++.+|.+|+.|+..+|++
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsv 248 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSV 248 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999998875
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.74 E-value=6.5e-18 Score=129.01 Aligned_cols=102 Identities=26% Similarity=0.348 Sum_probs=82.9
Q ss_pred cccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 8 SIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 8 ~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
++..++..|+ +|+|++..++.+ ++....+ .....++|+++++|+||+||||||||++|+++|++++.+++. ++
T Consensus 219 e~~~~~~~~~--dvgGl~~lK~~l-~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~-l~ 291 (489)
T CHL00195 219 EFYSVNEKIS--DIGGLDNLKDWL-KKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR-LD 291 (489)
T ss_pred cccCCCCCHH--HhcCHHHHHHHH-HHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-EE
Confidence 3445566666 699999988887 3322211 234566899999999999999999999999999999998766 77
Q ss_pred CcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 88 GPQVLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
.+.+.++|+|+++.+++++|+.|+..+|.
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~ 320 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPC 320 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCc
Confidence 88899999999999999999999987764
No 29
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.72 E-value=1.2e-17 Score=133.15 Aligned_cols=101 Identities=42% Similarity=0.744 Sum_probs=90.7
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+.+.|+ ||+|++.+++++ ++.+..++.++++++.+++.++.+++|+||||||||++++++|++++.+++. +++.++
T Consensus 173 ~~~~~~--di~G~~~~~~~l-~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~-i~~~~i 248 (733)
T TIGR01243 173 PKVTYE--DIGGLKEAKEKI-REMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS-INGPEI 248 (733)
T ss_pred CCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE-EecHHH
Confidence 455666 599999999998 8999999999999999999999999999999999999999999999888654 778888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
.+.+.++.+..++.+|+.|..+.+.
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~~~p~ 273 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEENAPS 273 (733)
T ss_pred hcccccHHHHHHHHHHHHHHhcCCc
Confidence 8999999999999999999877654
No 30
>KOG0732|consensus
Probab=99.72 E-value=1e-17 Score=134.86 Aligned_cols=104 Identities=31% Similarity=0.585 Sum_probs=92.7
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC----CCeeec
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR----EPKIVN 87 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~----~~~~~~ 87 (121)
..+.|+ ++||++..+.++ ++.+..++..|+.|.++++.+|+|+++|||||||||+.|+++|..+... .+...+
T Consensus 260 ~~v~fd--~vggl~~~i~~L-KEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 260 SSVGFD--SVGGLENYINQL-KEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred cccCcc--ccccHHHHHHHH-HHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 345666 599999999998 9999999999999999999999999999999999999999999988543 222368
Q ss_pred CcccchhhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632 88 GPQVLDKYVGESEANVRRLFADAEEEEKRVS 118 (121)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~ 118 (121)
+.+..++|+|+.++.++.+|++|++..|++.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSII 367 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSII 367 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEE
Confidence 8899999999999999999999999988763
No 31
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.72 E-value=1.4e-17 Score=127.70 Aligned_cols=100 Identities=29% Similarity=0.538 Sum_probs=87.0
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
|.+.|+ |++|++++++++ ++.+. .+.+++.+.+++..+++|++|+||||||||++++++|++++.+++. ++..++
T Consensus 50 ~~~~~~--di~g~~~~k~~l-~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~-i~~~~~ 124 (495)
T TIGR01241 50 PKVTFK--DVAGIDEAKEEL-MEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-ISGSDF 124 (495)
T ss_pred CCCCHH--HhCCHHHHHHHH-HHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee-ccHHHH
Confidence 455665 699999999998 56555 4788999999999999999999999999999999999999988665 677888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
.+.+.+.+++.++.+|+.|+.++|.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPC 149 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999887654
No 32
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.5e-17 Score=126.39 Aligned_cols=99 Identities=28% Similarity=0.537 Sum_probs=90.0
Q ss_pred CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
+.|. |+.|.|..+.++ .+ +..++.+|.-|..+|...|+|++|+||||||||++||++|++.+.+++. +++++++.
T Consensus 147 v~F~--DVAG~dEakeel-~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~-iSGS~FVe 221 (596)
T COG0465 147 VTFA--DVAGVDEAKEEL-SE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-ISGSDFVE 221 (596)
T ss_pred cChh--hhcCcHHHHHHH-HH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee-ccchhhhh
Confidence 4444 799999999998 44 5578889999999999999999999999999999999999999999887 89999999
Q ss_pred hhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 94 KYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 94 ~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
.++|-..+.+|++|.+|++++|.+
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~I 245 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCI 245 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCe
Confidence 999999999999999999998854
No 33
>KOG0730|consensus
Probab=99.68 E-value=4.3e-17 Score=125.79 Aligned_cols=95 Identities=36% Similarity=0.689 Sum_probs=89.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES 99 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 99 (121)
+++|+..++..+ ++.+.+++.++..+..++.++++++++|||||||||.+++++|++.+..++. ++++++++++.|++
T Consensus 185 ~~gg~~~~~~~i-~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~-i~~peli~k~~gEt 262 (693)
T KOG0730|consen 185 DIGGLKRQLSVI-RELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFL-INGPELISKFPGET 262 (693)
T ss_pred ccchhHHHHHHH-HHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEe-cccHHHHHhcccch
Confidence 699999999998 9999999999999999999999999999999999999999999999977544 89999999999999
Q ss_pred HHHHHHHHHHHHHHH-Hh
Q psy3632 100 EANVRRLFADAEEEE-KR 116 (121)
Q Consensus 100 ~~~i~~~f~~a~~~~-~~ 116 (121)
++++|++|++|++++ |+
T Consensus 263 e~~LR~~f~~a~k~~~ps 280 (693)
T KOG0730|consen 263 ESNLRKAFAEALKFQVPS 280 (693)
T ss_pred HHHHHHHHHHHhccCCCe
Confidence 999999999999887 54
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.64 E-value=3.4e-16 Score=115.27 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=60.7
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
+++++|.+++||||||||||++|+++|++++.+++. ++.+++.++|+|++++.+|++|+.|++.+
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~-vsa~eL~sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIV-MSAGELESENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEE-EEHHHhhcCcCCcHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999655 89999999999999999999999999864
No 35
>CHL00176 ftsH cell division protein; Validated
Probab=99.64 E-value=5.1e-16 Score=121.84 Aligned_cols=100 Identities=32% Similarity=0.540 Sum_probs=85.1
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+.+.|+ |++|+++.++++ .+.+ ..+.+++.|..++...+++++|+||||||||++|+++|++.+.+++. ++++++
T Consensus 178 ~~~~f~--dv~G~~~~k~~l-~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~-is~s~f 252 (638)
T CHL00176 178 TGITFR--DIAGIEEAKEEF-EEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS-ISGSEF 252 (638)
T ss_pred CCCCHH--hccChHHHHHHH-HHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeee-ccHHHH
Confidence 344555 699999999887 5544 55778889999999999999999999999999999999999998766 678888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
...+.+.....++.+|+.|+..+|.
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~~~P~ 277 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKENSPC 277 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhcCCCc
Confidence 8888888889999999999887654
No 36
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.45 E-value=2.1e-13 Score=97.05 Aligned_cols=90 Identities=26% Similarity=0.420 Sum_probs=65.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCC---CccEEEEcCCCCcHHHHHHHHHHHhcC------CCCeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQH---VKGILLYGPPGTGKTLMARQIGQMLNA------REPKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~---~~~vll~Gp~G~GKT~l~~~la~~~~~------~~~~~~~~~~ 90 (121)
++.|++++++++ ++.+...... ......|..+ ..+++|+||||||||++|+++|+.+.. ..+..+...+
T Consensus 7 ~~~Gl~~vk~~i-~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 7 RMVGLDEVKALI-KEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HhcChHHHHHHH-HHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 689999999988 6665554332 3333455544 346899999999999999999987631 1122256677
Q ss_pred cchhhhchhHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAE 111 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~ 111 (121)
+.+.|.|+++..++++|+.|.
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~ 105 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL 105 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc
Confidence 888899999999999998764
No 37
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.43 E-value=2.6e-13 Score=97.78 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=69.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCC---CccEEEEcCCCCcHHHHHHHHHHHhcCC------CCeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQH---VKGILLYGPPGTGKTLMARQIGQMLNAR------EPKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~---~~~vll~Gp~G~GKT~l~~~la~~~~~~------~~~~~~~~~ 90 (121)
+++|++++++++ ++.+.+ +..++.+.+.|+.+ ..+++|+||||||||++|+++|..+... .+..++..+
T Consensus 23 ~l~Gl~~vk~~i-~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 23 ELIGLKPVKTRI-REIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred hccCHHHHHHHH-HHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 489999999998 666555 44667777788765 3379999999999999999999987431 122255667
Q ss_pred cchhhhchhHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAE 111 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~ 111 (121)
++..+.|+++.+++.+|+.|.
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~ 121 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAM 121 (284)
T ss_pred HhHhhcccchHHHHHHHHHcc
Confidence 778888988888888888763
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.43 E-value=4.1e-13 Score=96.89 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=67.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCc---cEEEEcCCCCcHHHHHHHHHHHhcCC------CCeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVK---GILLYGPPGTGKTLMARQIGQMLNAR------EPKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~---~vll~Gp~G~GKT~l~~~la~~~~~~------~~~~~~~~~ 90 (121)
+++|++++++++ ++.+.. +..++.+.+.|+.++. +++|+||||||||++|+++|..+... .+..++..+
T Consensus 24 ~l~Gl~~vK~~i-~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 24 ELVGLAPVKTRI-REIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred hcCCcHHHHHHH-HHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 599999999988 666554 3345666777776542 48999999999999999999986321 122356667
Q ss_pred cchhhhchhHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAE 111 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~ 111 (121)
+++.+.|+++.+++.+|+.|.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~ 122 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM 122 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc
Confidence 888899988888888887753
No 39
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.42 E-value=1.6e-13 Score=115.86 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=45.7
Q ss_pred CChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632 41 FPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY 95 (121)
Q Consensus 41 ~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 95 (121)
..+....++|+.+++||||+||||||||.+|+++|++.+.+++. +++++++.++
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIs-ISgs~fl~~~ 1670 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFIT-VFLNKFLDNK 1670 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEE-EEHHHHhhcc
Confidence 34566678999999999999999999999999999999999877 6677766543
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.40 E-value=5.5e-13 Score=105.23 Aligned_cols=95 Identities=27% Similarity=0.507 Sum_probs=81.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES 99 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 99 (121)
++.|++..+.++ .+.+.. +..++.+..++...++|++|+||||||||+++++++++++.+++. +++.++...+.+..
T Consensus 153 di~g~~~~~~~l-~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~-is~~~~~~~~~g~~ 229 (644)
T PRK10733 153 DVAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDFVEMFVGVG 229 (644)
T ss_pred HHcCHHHHHHHH-HHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEE-EehHHhHHhhhccc
Confidence 689999998887 555544 566777888888889999999999999999999999999998765 77888888899999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy3632 100 EANVRRLFADAEEEEKRV 117 (121)
Q Consensus 100 ~~~i~~~f~~a~~~~~~~ 117 (121)
...++.+|+.|+..+|.+
T Consensus 230 ~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 230 ASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred HHHHHHHHHHHHhcCCcE
Confidence 999999999998876643
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.36 E-value=7.2e-13 Score=84.27 Aligned_cols=57 Identities=40% Similarity=0.746 Sum_probs=51.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
++|+||||||||++++.+|..++.++.. ++..++.+.+.++.++.++.+|++|....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~-i~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 57 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE-IDGSELISSYAGDSEQKIRDFFKKAKKSA 57 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE-EETTHHHTSSTTHHHHHHHHHHHHHHHTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc-ccccccccccccccccccccccccccccc
Confidence 6899999999999999999999987655 78888888889999999999999998775
No 42
>KOG0744|consensus
Probab=99.32 E-value=1.9e-12 Score=93.85 Aligned_cols=62 Identities=34% Similarity=0.515 Sum_probs=51.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC--------CeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE--------PKIVNGPQVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
.+-+++|||||||||+||+++|..+.... ..-++...+.++|++|+.+.+..+|++.++...
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 44589999999999999999999985431 111678889999999999999999999887643
No 43
>KOG0743|consensus
Probab=99.28 E-value=6.5e-12 Score=94.10 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=57.5
Q ss_pred CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
-.|+.+ .||..+++-+.+++..+....+.|++.|..+.+|+||+||||||||+++-|||++++.+..
T Consensus 198 stF~Tl---aMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy 264 (457)
T KOG0743|consen 198 STFETL---AMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY 264 (457)
T ss_pred CCcccc---ccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence 445543 3777666656889999999999999999999999999999999999999999999988743
No 44
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.24 E-value=2.5e-11 Score=91.12 Aligned_cols=90 Identities=33% Similarity=0.420 Sum_probs=64.6
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHhC-CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhc-
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLG-CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVG- 97 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~- 97 (121)
|.|.++.++.+ ...+...+....+...+. -..+++++|+||||||||++++++|..++.+++. ++...+. ..|+|
T Consensus 14 IiGQ~eAkk~l-svAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~-vdat~~~e~g~vG~ 91 (441)
T TIGR00390 14 IIGQDNAKKSV-AIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVGR 91 (441)
T ss_pred ccCHHHHHHHH-HHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE-eecceeecCCcccC
Confidence 78999988887 444333222111111111 1235789999999999999999999999998766 6666666 47888
Q ss_pred hhHHHHHHHHHHHHH
Q psy3632 98 ESEANVRRLFADAEE 112 (121)
Q Consensus 98 ~~~~~i~~~f~~a~~ 112 (121)
+.+..++.+|+.|..
T Consensus 92 dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 92 DVESMVRDLTDAAVK 106 (441)
T ss_pred CHHHHHHHHHHHHHH
Confidence 578999999999854
No 45
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=3.2e-11 Score=90.61 Aligned_cols=94 Identities=32% Similarity=0.385 Sum_probs=66.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG 97 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~ 97 (121)
.|.|.+.+++.+ ...+...++...+...... ..+.+++|+||||||||++|+++|..++.+++. ++...+.. +|+|
T Consensus 16 ~IiGQe~Akkal-avAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~-vD~t~f~e~GyvG 93 (443)
T PRK05201 16 YIIGQDDAKRAV-AIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG 93 (443)
T ss_pred ccCCHHHHHHHH-HHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhee-ecchhhccCCccc
Confidence 388999998887 4444322111111111110 125789999999999999999999999999776 66666664 6999
Q ss_pred -hhHHHHHHHHHHHHHHHH
Q psy3632 98 -ESEANVRRLFADAEEEEK 115 (121)
Q Consensus 98 -~~~~~i~~~f~~a~~~~~ 115 (121)
+.+..++.+|+.|....+
T Consensus 94 ~d~e~~ir~L~~~A~~~~~ 112 (443)
T PRK05201 94 RDVESIIRDLVEIAVKMVR 112 (443)
T ss_pred CCHHHHHHHHHHHHHHHhH
Confidence 558999999999965544
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.03 E-value=6.5e-10 Score=82.63 Aligned_cols=54 Identities=31% Similarity=0.571 Sum_probs=42.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
...++|||||||||||+|++||+..+..|..+ +. +..+-+.+|++|+.|++...
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~-sA-------v~~gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEAL-SA-------VTSGVKDLREIIEEARKNRL 101 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEe-cc-------ccccHHHHHHHHHHHHHHHh
Confidence 44699999999999999999999999886553 22 22245679999999987654
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.00 E-value=8.1e-10 Score=76.93 Aligned_cols=55 Identities=25% Similarity=0.366 Sum_probs=35.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
++.|.++.+..+ +-.+.... ..-....+++||||||+||||+|+.+|++++.++.
T Consensus 25 efiGQ~~l~~~l-~i~i~aa~--------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 25 EFIGQEHLKGNL-KILIRAAK--------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp CS-S-HHHHHHH-HHHHHHHH--------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred HccCcHHHHhhh-HHHHHHHH--------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 699999988876 32222111 01123457999999999999999999999998853
No 48
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.85 E-value=6.2e-09 Score=83.57 Aligned_cols=62 Identities=29% Similarity=0.477 Sum_probs=47.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCcccc--hhhhchhHHHHHHHHHHHHHHH
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGPQVL--DKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
....+++|+||||||||++++++|..+ +..+.. ++.+.++ .+|.|+.+..++.+|++++.+.
T Consensus 201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~ 274 (731)
T TIGR02639 201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LDMGSLLAGTKYRGDFEERLKAVVSEIEKEP 274 (731)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ecHHHHhhhccccchHHHHHHHHHHHHhccC
Confidence 345689999999999999999999987 222222 4444555 4688999999999999987653
No 49
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.80 E-value=8.3e-10 Score=81.08 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD 109 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 109 (121)
+..+..+.|.||+||||||++|+||+...++.+.+..++..+... ....+.+.++||.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~iamVFQ~ 83 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGIAMVFQN 83 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCEEEEeCC
Confidence 344455999999999999999999999999999987777776553 3344666667764
No 50
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.79 E-value=1.4e-08 Score=81.97 Aligned_cols=85 Identities=26% Similarity=0.344 Sum_probs=54.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc-----cc---
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP-----QV--- 91 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~-----~~--- 91 (121)
++.|++++++.+ .+.+...... +-..+..++|+||||||||++|+++|+.++.+++.+..+. ++
T Consensus 321 ~~~G~~~~k~~i-~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERI-LEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHH-HHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 477888888777 4433322110 1112336999999999999999999999998876642211 11
Q ss_pred chhhhchhHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEE 112 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~ 112 (121)
...|.|.....+.+.|..|..
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~ 413 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKT 413 (775)
T ss_pred CCceeCCCCchHHHHHHHhCc
Confidence 134666666667777776643
No 51
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.77 E-value=3e-09 Score=78.55 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=46.9
Q ss_pred HHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632 46 VEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD 109 (121)
Q Consensus 46 ~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 109 (121)
.+++.++...| +.|.|||||||||+.|+||+...++.+.+..++..+.. +....+.+..+||.
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ig~VFQ~ 85 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD-VPPEKRPIGMVFQS 85 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhhcccceeecC
Confidence 33444444444 78999999999999999999999999988666666655 34445667777775
No 52
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.76 E-value=1.1e-08 Score=80.52 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=68.5
Q ss_pred cccCCccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 2 EVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 2 e~~~~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+++....+..|+.-++ ++.|.++.++.+ +..+. ...+++|+||||||||+++++++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~--~viG~~~a~~~l-~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 3 KFETTEEIPVPERLID--QVIGQEEAVEII-KKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcccccccCcchhhHh--hccCHHHHHHHH-HHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4566667767775555 488888877765 33332 12379999999999999999999999765
Q ss_pred CCe----eecC-----cccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 82 EPK----IVNG-----PQVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 82 ~~~----~~~~-----~~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
.+. +.+. ..+..-+.+..++.++..|..|++.+++-
T Consensus 65 ~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~ 109 (608)
T TIGR00764 65 ELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAFKQPSSR 109 (608)
T ss_pred hheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhhcccchh
Confidence 211 1111 22334467778899999999999877653
No 53
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.75 E-value=2.4e-08 Score=75.42 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=53.7
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHh--CC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhh
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQL--GC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYV 96 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~--~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~ 96 (121)
|.|.+.+++.+ ...+............. .. .+..+++|+||||||||++|+++|..++.++.. ++...+. ..|+
T Consensus 73 ViGq~~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~-id~~~l~~~gyv 150 (412)
T PRK05342 73 VIGQERAKKVL-SVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI-ADATTLTEAGYV 150 (412)
T ss_pred eeChHHHHHHH-HHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee-cchhhcccCCcc
Confidence 78999888876 33332211110000000 11 134679999999999999999999999988765 5555543 3577
Q ss_pred chhH-HHHHHHHHH
Q psy3632 97 GESE-ANVRRLFAD 109 (121)
Q Consensus 97 ~~~~-~~i~~~f~~ 109 (121)
|+.. ..+..+++.
T Consensus 151 G~d~e~~l~~l~~~ 164 (412)
T PRK05342 151 GEDVENILLKLLQA 164 (412)
T ss_pred cchHHHHHHHHHHh
Confidence 7653 334555543
No 54
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.3e-08 Score=72.55 Aligned_cols=91 Identities=31% Similarity=0.354 Sum_probs=63.3
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES 99 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 99 (121)
|.|.++.++.+ .-.+.+..+...+...+.-. .|++||..||.|.|||.+||-+|+..+.+|+.+-.....--+|+|..
T Consensus 17 IIGQ~~AKkaV-AIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD 95 (444)
T COG1220 17 IIGQDEAKKAV-AIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD 95 (444)
T ss_pred hcCcHHHHHHH-HHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence 78999988877 44444444444444444322 27899999999999999999999999999988533322233677765
Q ss_pred -HHHHHHHHHHHHH
Q psy3632 100 -EANVRRLFADAEE 112 (121)
Q Consensus 100 -~~~i~~~f~~a~~ 112 (121)
+..+|++-+.|-.
T Consensus 96 VesivRDLve~av~ 109 (444)
T COG1220 96 VESIIRDLVEIAVK 109 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 5667776665543
No 55
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.72 E-value=2.7e-08 Score=80.81 Aligned_cols=65 Identities=31% Similarity=0.501 Sum_probs=49.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC---------CCCeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNA---------REPKIVNGPQVL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
+......+++|+||||+|||++++.+|..+.. ..+..++.+.++ .+|.|+.+.+++.+|+++++.
T Consensus 195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~ 270 (821)
T CHL00095 195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN 270 (821)
T ss_pred HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc
Confidence 34456678999999999999999999998742 112224555555 367889999999999998754
No 56
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.5e-08 Score=72.65 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=39.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|.++.++++ .-.+... +..-....+++|+||||.||||+|..+|++++..
T Consensus 27 efiGQ~~vk~~L-~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 27 EFIGQEKVKEQL-QIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred HhcChHHHHHHH-HHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 578888887776 3333221 1222445689999999999999999999999887
No 57
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.69 E-value=3.7e-08 Score=66.04 Aligned_cols=56 Identities=30% Similarity=0.474 Sum_probs=44.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
..++|+|++|+||||+.+++|+.++.+| ++....+....+.+ +.++|+.-.+..++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F---~D~D~~Ie~~~g~s---I~eIF~~~GE~~FR 58 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF---IDTDQEIEKRTGMS---IAEIFEEEGEEGFR 58 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc---ccchHHHHHHHCcC---HHHHHHHHhHHHHH
Confidence 4689999999999999999999999987 45667777666644 88888876665554
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.4e-08 Score=74.52 Aligned_cols=76 Identities=47% Similarity=0.774 Sum_probs=69.1
Q ss_pred ccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 38 SRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
.++.+++.++.++..++.+++++||||+|||++++++|.. ...+ ..+.+....+++.++.+..++.+|+.|+..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 77 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRLRELFEEAEKLAP 77 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc-cccCcchhhhhhhhHHHHHHHHHHHHHHHhCC
Confidence 3566788899999999999999999999999999999999 6666 66889999999999999999999999999876
No 59
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.67 E-value=8.9e-08 Score=67.52 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=43.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
++.|++.+++.+.+ ....++ .-.+..++||+|+.|||||++++++..++......+
T Consensus 28 ~L~Gie~Qk~~l~~-Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl 83 (249)
T PF05673_consen 28 DLIGIERQKEALIE-NTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL 83 (249)
T ss_pred HhcCHHHHHHHHHH-HHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence 69999999999833 332222 224677899999999999999999999987765554
No 60
>KOG2028|consensus
Probab=98.67 E-value=8e-08 Score=71.39 Aligned_cols=54 Identities=33% Similarity=0.596 Sum_probs=39.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
.++||||||||||++|+.|+.....+.+..+.-+ ....+...+|.+|+.|++..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelS-----At~a~t~dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELS-----ATNAKTNDVRDIFEQAQNEK 217 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe-----ccccchHHHHHHHHHHHHHH
Confidence 4999999999999999999998877743333211 12334567999999987653
No 61
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.66 E-value=8.3e-08 Score=71.13 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=37.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|+++.+.++... +... . .|.. ..+.++|+|||||||||+|++|++.+..
T Consensus 52 ~~~G~~~~i~~lv~~-l~~~------a--~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNY-FKSA------A--QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHH-HHHH------H--hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 699999998887432 2111 1 1222 2455789999999999999999999866
No 62
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.64 E-value=4.2e-08 Score=65.87 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=40.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE 98 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~ 98 (121)
.+.++..++++||+|||||++.|++|....++.+.+...++.++.+-.+
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChH
Confidence 4455666999999999999999999999999999988888777765443
No 63
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.64 E-value=1e-07 Score=59.96 Aligned_cols=61 Identities=31% Similarity=0.504 Sum_probs=40.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC--CeeecCcccchh--------------hhchhHHHHHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE--PKIVNGPQVLDK--------------YVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~i~~~f~~a~~~~ 114 (121)
+..++|+||||||||++++.+|..+.... +..++....... .........+.+++.|+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 34689999999999999999999998863 333444332221 12234555667777776643
No 64
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.63 E-value=9.7e-09 Score=71.08 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=43.0
Q ss_pred hHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-h-hhchhHHHHHHHHHH
Q psy3632 43 PEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-K-YVGESEANVRRLFAD 109 (121)
Q Consensus 43 ~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~f~~ 109 (121)
.++++.+.++. +.-+.++||+||||||++|++...-..+.+.+...+..+. . ...+-.+++..+||.
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~ 85 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ 85 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence 34444444444 4448899999999999999999998888888755443221 1 122233444456653
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.62 E-value=7.9e-08 Score=69.57 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=40.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
++.|.++.++++ +..+.... ..-..+.+++|+||||+|||++++++|+.++.+.
T Consensus 5 ~~iG~~~~~~~l-~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 5 EFIGQEKVKEQL-QLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred HHcCHHHHHHHH-HHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 689999998887 44442111 1112345799999999999999999999998663
No 66
>KOG0736|consensus
Probab=98.61 E-value=3.8e-08 Score=78.29 Aligned_cols=63 Identities=25% Similarity=0.442 Sum_probs=56.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
...+||+|+||||||++++++|.+++.+.+. +++.++.+.....++.++...|+.|+.-.+.+
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e-vdc~el~~~s~~~~etkl~~~f~~a~~~~pav 493 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLE-VDCYELVAESASHTETKLQAIFSRARRCSPAV 493 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEe-ccHHHHhhcccchhHHHHHHHHHHHhhcCceE
Confidence 3459999999999999999999999999777 88999999999999999999999999876543
No 67
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.60 E-value=1e-07 Score=72.05 Aligned_cols=54 Identities=35% Similarity=0.597 Sum_probs=38.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchh-HHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGES-EANVRRLFA 108 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~~~f~ 108 (121)
..+++|+||||||||++|+++|..++.++.. ++...+. ..|+|+. +..+..+++
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~-~da~~L~~~gyvG~d~e~~L~~~~~ 171 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAI-ADATTLTEAGYVGEDVENILLKLLQ 171 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEE-echhhccccccccccHHHHHHHHHH
Confidence 3579999999999999999999999887644 4544443 3577764 344444444
No 68
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=2.5e-08 Score=69.09 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=46.3
Q ss_pred ccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCC-----Ceee-cCcccchh--hhchhHHHHHHHH
Q psy3632 38 SRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNARE-----PKIV-NGPQVLDK--YVGESEANVRRLF 107 (121)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~-----~~~~-~~~~~~~~--~~~~~~~~i~~~f 107 (121)
......+.++.+.++.+. -..|.||+||||||++|++.+...... +.+. ++.++... -+-+-.+.+.++|
T Consensus 15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF 94 (253)
T COG1117 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF 94 (253)
T ss_pred EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence 334445555555555544 477999999999999999999876543 3332 33333332 1445567788888
Q ss_pred HHH
Q psy3632 108 ADA 110 (121)
Q Consensus 108 ~~a 110 (121)
|..
T Consensus 95 QkP 97 (253)
T COG1117 95 QKP 97 (253)
T ss_pred cCC
Confidence 864
No 69
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.57 E-value=1.9e-08 Score=69.66 Aligned_cols=75 Identities=13% Similarity=0.244 Sum_probs=54.6
Q ss_pred hhccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHH
Q psy3632 36 FASRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110 (121)
Q Consensus 36 i~~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a 110 (121)
+.+.+..+++.+.+.++... -..+.||+|+||||+.+++.+++.+..+.+...+.....|..+...+.|.+.-+.
T Consensus 7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~ 83 (259)
T COG4559 7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQN 83 (259)
T ss_pred eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence 34444555666665555544 4779999999999999999999999888876677777778777666666655443
No 70
>KOG0741|consensus
Probab=98.57 E-value=3e-08 Score=76.36 Aligned_cols=66 Identities=26% Similarity=0.388 Sum_probs=55.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
..+-..++|+||||+|||+||-.+|...+.+++.+++..+++.....+.-..++.+|++|.+.+-+
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ls 600 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS 600 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcce
Confidence 344456999999999999999999999999999999888888766566667899999999886543
No 71
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.56 E-value=1.5e-07 Score=69.12 Aligned_cols=54 Identities=26% Similarity=0.390 Sum_probs=40.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
++.|.++.++.+ ...+.... ..-.++.+++|+||||+|||++|+++|++++...
T Consensus 26 ~~vG~~~~~~~l-~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 26 EFIGQEKVKENL-KIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred HhcCcHHHHHHH-HHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 589999988877 43332110 0113456899999999999999999999998764
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.56 E-value=3.7e-08 Score=70.04 Aligned_cols=52 Identities=15% Similarity=0.330 Sum_probs=38.0
Q ss_pred hHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 43 PEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 43 ~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
..+++++.++.+. -+.+.||+|||||||.|++++.+.+..+.+.-.+..+..
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 3445555554444 488999999999999999999999888877544444433
No 73
>KOG0742|consensus
Probab=98.55 E-value=2.3e-07 Score=69.84 Aligned_cols=60 Identities=32% Similarity=0.582 Sum_probs=45.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
+-++|+||||||||||++||-||...+.+.- +..++++. ..-.+.-.+|+++|+-|....
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA-~mTGGDVA-PlG~qaVTkiH~lFDWakkS~ 442 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYA-IMTGGDVA-PLGAQAVTKIHKLFDWAKKSR 442 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCcee-hhcCCCcc-ccchHHHHHHHHHHHHHhhcc
Confidence 3457999999999999999999999988843 24444443 333445678999999887653
No 74
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.54 E-value=9.5e-08 Score=65.86 Aligned_cols=45 Identities=40% Similarity=0.637 Sum_probs=32.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ .-.. .| ..+++++||||||||++|+.+...+..
T Consensus 4 dI~GQe~aKrAL-~iAA------------aG---~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 4 DIVGQEEAKRAL-EIAA------------AG---GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp CSSSTHHHHHHH-HHHH------------HC---C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred hhcCcHHHHHHH-HHHH------------cC---CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 699999988887 2111 12 358999999999999999999998754
No 75
>KOG0989|consensus
Probab=98.54 E-value=1.4e-07 Score=68.23 Aligned_cols=47 Identities=32% Similarity=0.576 Sum_probs=36.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+.+++.+ ...+.. ....+++||||||||||+.++++|+++..
T Consensus 37 e~~gQe~vV~~L-~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 37 ELAGQEHVVQVL-KNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred hhcchHHHHHHH-HHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 588898888776 433321 22346999999999999999999999865
No 76
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.54 E-value=3.4e-07 Score=74.80 Aligned_cols=60 Identities=25% Similarity=0.414 Sum_probs=44.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcC----------CCCeeecCcccc--hhhhchhHHHHHHHHHHHHH
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNA----------REPKIVNGPQVL--DKYVGESEANVRRLFADAEE 112 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~ 112 (121)
....+++|+||||+|||++++++|..+.. +.+ .++.+.++ .+|.|+.++.++.+|+++.+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~-~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL-ALDMGALVAGAKYRGEFEERLKGVLNDLAK 268 (857)
T ss_pred CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE-EEehhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 44557999999999999999999998732 221 23344444 35778889999999998654
No 77
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.51 E-value=2.8e-07 Score=68.16 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=44.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC--CCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR--EPKIVNGPQVLDKYVGESEANVRRLFAD 109 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 109 (121)
+--..+++|+.||||||||.+|-++|++++.. |.. ++++++.+.-..+++.. .+.|..
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~-isgsEiYS~E~kKTE~L-~qa~Rr 120 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA-ISGSEIYSLEVKKTEAL-TQALRR 120 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee-eccceeeeecccHHHHH-HHHHHH
Confidence 33457899999999999999999999999864 444 78888888777777643 334433
No 78
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.51 E-value=2.4e-07 Score=68.79 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=48.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe-eecCcccchhhhch
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK-IVNGPQVLDKYVGE 98 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~-~~~~~~~~~~~~~~ 98 (121)
++.|..++.+.. . .+... .+ -+--..+++||.||||||||.+|-++|++++..... .++++++.+.-..+
T Consensus 25 GlVGQ~~AReAa-g-iiv~m------Ik-~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 25 GLVGQEKAREAA-G-IIVDM------IK-EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp TEES-HHHHHHH-H-HHHHH------HH-TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred cccChHHHHHHH-H-HHHHH------Hh-cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 677887766654 2 12111 11 132357789999999999999999999999865322 26788888877777
Q ss_pred hHHHHHHHHH
Q psy3632 99 SEANVRRLFA 108 (121)
Q Consensus 99 ~~~~i~~~f~ 108 (121)
+| .+.+.|+
T Consensus 96 TE-~L~qa~R 104 (398)
T PF06068_consen 96 TE-ALTQAFR 104 (398)
T ss_dssp HH-HHHHHHH
T ss_pred hH-HHHHHHH
Confidence 76 3444444
No 79
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=3e-08 Score=71.75 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=45.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh--hhchhHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK--YVGESEANVRRLFADAE 111 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~f~~a~ 111 (121)
++...-+.|.||+|+||||+.|+||+...++.+.+..+.+..-+ .....++++--+||+..
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 34455588999999999999999999999999998766663221 13344666777777654
No 80
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.50 E-value=1e-07 Score=67.12 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=33.4
Q ss_pred HHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 44 EVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 44 ~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.++++++++. ...+.+.|||||||||+.+.+|+...+..+.+.
T Consensus 17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~ 61 (248)
T COG1116 17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61 (248)
T ss_pred EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3344444444 455999999999999999999999988888753
No 81
>PRK13948 shikimate kinase; Provisional
Probab=98.49 E-value=2.9e-07 Score=62.51 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE 98 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~ 98 (121)
++..++|+|.+||||||+++.+|..++.++ ++....+....|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~---iD~D~~ie~~~g~ 51 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHF---IDTDRYIERVTGK 51 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCE---EECCHHHHHHHhC
Confidence 457799999999999999999999998775 4455555555543
No 82
>PRK13947 shikimate kinase; Provisional
Probab=98.49 E-value=2.6e-07 Score=61.46 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=28.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
+|+++|+|||||||+++.+|..++.++ ++...++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~---id~d~~~~~ 38 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF---IDTDKEIEK 38 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE---EECchhhhh
Confidence 589999999999999999999998875 334444443
No 83
>PRK13949 shikimate kinase; Provisional
Probab=98.49 E-value=3.1e-07 Score=61.56 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=25.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.|+|+|+||+||||+++.+|+.++.+++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 5899999999999999999999987643
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.9e-07 Score=70.74 Aligned_cols=48 Identities=31% Similarity=0.426 Sum_probs=36.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.++.++.+ +..+... ..+..++|+|||||||||+|+++|+.+..
T Consensus 15 divGq~~i~~~L-~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 15 EVVGQDHVKKLI-INALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 699998876655 4433221 23456899999999999999999998764
No 85
>PRK00625 shikimate kinase; Provisional
Probab=98.48 E-value=2.5e-07 Score=62.31 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=28.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
+|+|+|.||+||||+++.+|..++.++ ++...++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~---id~D~~I~~ 37 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPF---FDTDDLIVS 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE---EEhhHHHHH
Confidence 489999999999999999999998775 334444443
No 86
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.48 E-value=3.3e-07 Score=60.79 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=26.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.+..++|+|+|||||||+++.+|..++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~ 32 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDF 32 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 456799999999999999999999998654
No 87
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.7e-07 Score=67.39 Aligned_cols=57 Identities=33% Similarity=0.561 Sum_probs=43.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchhH-HHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGESE-ANVRRLFADAE 111 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~~-~~i~~~f~~a~ 111 (121)
..+++|.||.|||||.||..+|+.++.+|-. -+...+- ..|+|+.- ..+.++.|.|.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFai-ADATtLTEAGYVGEDVENillkLlqaad 155 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAI-ADATTLTEAGYVGEDVENILLKLLQAAD 155 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeee-ccccchhhccccchhHHHHHHHHHHHcc
Confidence 3479999999999999999999999999643 5555554 46999984 44556666543
No 88
>PRK08118 topology modulation protein; Reviewed
Probab=98.48 E-value=3.4e-07 Score=61.26 Aligned_cols=29 Identities=41% Similarity=0.673 Sum_probs=25.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
.|+++||||+||||+|+.|+..++.+.+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~ 31 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHH 31 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence 48999999999999999999999887543
No 89
>PRK04195 replication factor C large subunit; Provisional
Probab=98.48 E-value=2.7e-07 Score=71.00 Aligned_cols=55 Identities=31% Similarity=0.467 Sum_probs=41.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
++.|.+++++++ +..+..... | .++..++|+||||+|||++|+++|+.++.....
T Consensus 15 dlvg~~~~~~~l-~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 15 DVVGNEKAKEQL-REWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred HhcCCHHHHHHH-HHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 589999988887 554432221 1 236689999999999999999999999876444
No 90
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.46 E-value=1.2e-07 Score=59.54 Aligned_cols=25 Identities=36% Similarity=0.822 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
|++.|||||||||+|+.+|..++..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 7899999999999999999998755
No 91
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.45 E-value=7.6e-07 Score=72.73 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=45.2
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCC---------CeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNARE---------PKIVNGPQVL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
....+++|+||||||||++++.+|..+.... +..++.+.+. ..+.|+.+..++.+|+++++.
T Consensus 206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~ 278 (852)
T TIGR03345 206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS 278 (852)
T ss_pred CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 3455799999999999999999999874221 1112333343 257888999999999998653
No 92
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.44 E-value=1.5e-07 Score=62.49 Aligned_cols=54 Identities=28% Similarity=0.454 Sum_probs=35.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
|.+.|||||||||+++.+|..++.++ ++.+.+......+..-.+.+.-+.|+++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~---vsaG~iFR~~A~e~gmsl~ef~~~AE~~ 56 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKL---VSAGTIFREMARERGMSLEEFSRYAEED 56 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCce---eeccHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 67899999999999999999999875 4444444333333222344444455443
No 93
>KOG0735|consensus
Probab=98.43 E-value=4.6e-07 Score=71.90 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=55.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC---CeeecCcccchhhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE---PKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVS 118 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~ 118 (121)
..+++|.||+|||||.|+++++.++..+. +.+++++.+-...+....+.++.+|..|..++|++=
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiI 498 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSII 498 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEE
Confidence 56799999999999999999999987653 344778877777777788889999999999999863
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.42 E-value=8.6e-07 Score=67.07 Aligned_cols=73 Identities=25% Similarity=0.461 Sum_probs=47.1
Q ss_pred ccCCcHHHHHH--HHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc
Q psy3632 20 GIGGLDKEFTA--IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG 97 (121)
Q Consensus 20 ~i~Gl~~~~~~--i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~ 97 (121)
++.|.++.+.. .+++.+.. ....+++|+||||||||++|+++|+.++..+.. ++...
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~-l~a~~------- 71 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA-LSAVT------- 71 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-Eeccc-------
Confidence 58888877554 11333321 123469999999999999999999998877544 32221
Q ss_pred hhHHHHHHHHHHHHHH
Q psy3632 98 ESEANVRRLFADAEEE 113 (121)
Q Consensus 98 ~~~~~i~~~f~~a~~~ 113 (121)
.....++.+++.++..
T Consensus 72 ~~~~~ir~ii~~~~~~ 87 (413)
T PRK13342 72 SGVKDLREVIEEARQR 87 (413)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 1234466777776543
No 95
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=7.5e-07 Score=70.59 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=52.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC-----cccc--
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG-----PQVL-- 92 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~-----~~~~-- 92 (121)
|.-||+++++.+ -+.+.... ...-.-..-++|+||||+|||++++.||..++..|+.+.-+ +++.
T Consensus 324 dHYGLekVKeRI-lEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERI-LEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHH-HHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 467899988887 44432221 11111123477899999999999999999999998876322 2222
Q ss_pred -hhhhchhHHHHHHHHHHHH
Q psy3632 93 -DKYVGESEANVRRLFADAE 111 (121)
Q Consensus 93 -~~~~~~~~~~i~~~f~~a~ 111 (121)
..|.|...-++-+-...|.
T Consensus 396 RRTYIGamPGrIiQ~mkka~ 415 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAG 415 (782)
T ss_pred cccccccCChHHHHHHHHhC
Confidence 2467766555544444443
No 96
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.41 E-value=1.1e-06 Score=71.91 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=45.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC---------CCeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR---------EPKIVNGPQVL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
....+++|+||||+|||++++++|..+... .+..++.+.++ ..|.|+.++.++.+|+.+++.
T Consensus 192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~ 264 (852)
T TIGR03346 192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS 264 (852)
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc
Confidence 445679999999999999999999986321 11113334443 357788899999999988653
No 97
>PRK14532 adenylate kinase; Provisional
Probab=98.40 E-value=5.5e-07 Score=60.91 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=28.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
.+++.|||||||||+++.+|..++... ++.++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~---is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ---LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE---EeCcHHHHH
Confidence 488999999999999999999987553 455555544
No 98
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=2.3e-07 Score=59.75 Aligned_cols=29 Identities=45% Similarity=0.792 Sum_probs=25.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+|+|+||||||||++++.+|..++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 48999999999999999999999776544
No 99
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.9e-07 Score=66.56 Aligned_cols=47 Identities=34% Similarity=0.412 Sum_probs=36.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ +..+... +.+..++|+||+|+||||+|+++|+.+.
T Consensus 17 ~iiGq~~~~~~l-~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 17 DIIGQKHIVTAI-SNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hccChHHHHHHH-HHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 689999988876 4333211 2344589999999999999999999885
No 100
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.40 E-value=2.1e-07 Score=65.40 Aligned_cols=59 Identities=15% Similarity=0.260 Sum_probs=44.0
Q ss_pred cCCChHHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc
Q psy3632 39 RVFPPEVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG 97 (121)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~ 97 (121)
.+.++.+++++.++.++| ..+.||+|||||++.|.+.+++.+..+.+...+..+.....
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~ 77 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE 77 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence 344556677777777665 67899999999999999999999998887544444444333
No 101
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.40 E-value=2.3e-07 Score=65.92 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=46.2
Q ss_pred ChHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch-hHHHHHHHHHH
Q psy3632 42 PPEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE-SEANVRRLFAD 109 (121)
Q Consensus 42 ~~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~f~~ 109 (121)
+....+++.++. ..-++|.||+||||||+.|.|.+...++.+.+...++.++.+..- -.+.+..+.|.
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 334444544444 445889999999999999999999999999886666666554332 23445444443
No 102
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.39 E-value=1.3e-07 Score=64.55 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchhHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGESEANVRRLFADAE 111 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~f~~a~ 111 (121)
++....+.+.|.+|+||||+|+.+|+...+..+.+....... -+-+.-..+.+|++||++.
T Consensus 36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence 344566999999999999999999999999988875444433 2333334677999999764
No 103
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.39 E-value=5e-07 Score=63.15 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
.+....-+.+.||+|||||||...++....++.+.+...+..+
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~ 69 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDL 69 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEc
Confidence 3444556999999999999999999999988888764444333
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.9e-07 Score=67.29 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=42.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+.+++.+ +..+...... +..++...+..++|+||+|+|||++|+++|+.+..
T Consensus 6 ~IiGq~~~~~~L-~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 6 DLVGQEAVVAEL-RAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred hccChHHHHHHH-HHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 689999998887 6666544321 12233345677999999999999999999997643
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=8e-07 Score=65.04 Aligned_cols=45 Identities=27% Similarity=0.451 Sum_probs=33.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.++.+..+ +..+.. ....+++|+||||||||++++++|+++
T Consensus 14 ~~~g~~~~~~~L-~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 14 DIVGNEDAVSRL-QVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HhcCcHHHHHHH-HHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 578888877766 433221 112359999999999999999999987
No 106
>PRK07261 topology modulation protein; Provisional
Probab=98.36 E-value=9e-07 Score=59.39 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.++++|+||+||||+++.++..++.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i 29 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVL 29 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence 3889999999999999999999876643
No 107
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.35 E-value=2.5e-07 Score=59.35 Aligned_cols=30 Identities=37% Similarity=0.593 Sum_probs=21.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++|.|+||+|||++++++|+.++..+..+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 489999999999999999999998886554
No 108
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.35 E-value=5.5e-07 Score=61.95 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632 45 VVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 45 ~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
+.+...++.+.| -.|.||+|+|||||...+++.+..+.+.+...+..+..|.++...+.-.+..+...-.
T Consensus 16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred eeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 344444444443 6699999999999999999999999999877777777787776555555555544433
No 109
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.34 E-value=7.6e-07 Score=62.50 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE 98 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~ 98 (121)
.+.....+.+.||+|+|||||.|++++..+...+.+...+.-+.+..+.
T Consensus 26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k 74 (258)
T COG3638 26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK 74 (258)
T ss_pred EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH
Confidence 4455566999999999999999999999988888875555444444433
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=8.7e-07 Score=68.02 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ +..+... ..+..++|+||+||||||+|+++|+.+..
T Consensus 19 dvVGQe~iv~~L-~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 19 DVIHQDLAIGAL-QNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHhChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 589999888876 4333211 12345899999999999999999998865
No 111
>KOG0745|consensus
Probab=98.33 E-value=8.4e-07 Score=67.08 Aligned_cols=58 Identities=34% Similarity=0.650 Sum_probs=47.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchh-HHHHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGES-EANVRRLFADAEEE 113 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~~~f~~a~~~ 113 (121)
.+|||.||+|+|||.|++.+|+.++.++. +.++..+- ..|+|+. +.-|..+.+.|.-+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfa-IcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n 286 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFA-ICDCTTLTQAGYVGEDVESVIQKLLQEAEYN 286 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeE-EecccchhhcccccccHHHHHHHHHHHccCC
Confidence 46999999999999999999999999965 47776665 4689987 66678888777543
No 112
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.33 E-value=6e-07 Score=64.08 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=27.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...++|.||||||||++|+++|..++.++..+
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 45699999999999999999999988876553
No 113
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.32 E-value=1e-06 Score=59.39 Aligned_cols=40 Identities=18% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+.+...++|.||+|+||||+++++++.+.+..+.+....
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g 60 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 3445556899999999999999999999888777764433
No 114
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=5.2e-08 Score=68.63 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=45.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee-cCcccch-hhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLD-KYVGESEANVRRLFADAEEEEKRVS 118 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~~f~~a~~~~~~~~ 118 (121)
.+.....+++.|++||||||+++.+++.+.+..+.+. ++..... ....+-.+++-.+||.+..+-...+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 3444556999999999999999999999998877763 3322221 2233334445556766665554443
No 115
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.32 E-value=1.4e-06 Score=70.28 Aligned_cols=63 Identities=25% Similarity=0.351 Sum_probs=44.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcC---CC------CeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA---RE------PKIVNGPQVL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---~~------~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
.....+++|+||||+|||++++++|...-. +. +..++...++ ..|.|+.+.+++.+|+.+++.
T Consensus 204 r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~ 277 (758)
T PRK11034 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD 277 (758)
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc
Confidence 344668999999999999999999986511 11 1112223333 356788899999999988754
No 116
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.32 E-value=8.1e-07 Score=61.35 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 61 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3445556899999999999999999999877666653
No 117
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.31 E-value=1.3e-06 Score=56.87 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+++++|+|||||||+++.+|..++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~ 27 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPF 27 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 378999999999999999999997764
No 118
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.31 E-value=1.4e-06 Score=55.21 Aligned_cols=26 Identities=62% Similarity=1.000 Sum_probs=23.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
....++++||||+|||++++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35579999999999999999999998
No 119
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.30 E-value=2.1e-07 Score=64.39 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +.++..+.|.||+|+|||||++++++...+..+.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344443 44455689999999999999999999987766665
No 120
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.30 E-value=9.4e-07 Score=60.88 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.|.||+|+||||+++++++.+.+..+.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~ 60 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3444556899999999999999999999877666653
No 121
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-06 Score=65.57 Aligned_cols=48 Identities=25% Similarity=0.377 Sum_probs=36.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+.. + +.+..++|+||+|+||||+|+++|+.+..
T Consensus 17 eiiGq~~~~~~L-~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 17 DITAQEHITRTI-QNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hccChHHHHHHH-HHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 588988877765 443321 1 23456999999999999999999998854
No 122
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.30 E-value=6.1e-07 Score=63.09 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc-ccchh-hhchhHHHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP-QVLDK-YVGESEANVRRLFADAE 111 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~~~f~~a~ 111 (121)
.+..+..+.++|++||||||++|++++...+..+.+...+ .+..+ ......+.++.+||+..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~ 92 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY 92 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc
Confidence 3444556889999999999999999999999888875444 22221 11122445666776643
No 123
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-06 Score=67.60 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=37.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ +..+... ..+..+||+||+|+|||++|+++|+.+..
T Consensus 17 divGq~~v~~~L-~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 17 EVIGQAPVVRAL-SNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HhcCCHHHHHHH-HHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 699999988877 4433211 22446899999999999999999998854
No 124
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-06 Score=67.18 Aligned_cols=47 Identities=38% Similarity=0.492 Sum_probs=36.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ +..+.. + +.+..++|+||+|+||||+|+.+|+.+.
T Consensus 14 dliGQe~vv~~L-~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 14 DLVGQDVLVRIL-RNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred HhcCcHHHHHHH-HHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 699999888766 433321 1 3355799999999999999999999763
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.30 E-value=2.6e-06 Score=69.08 Aligned_cols=58 Identities=22% Similarity=0.313 Sum_probs=40.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
++-|++++++.+ .+.+.... ..+-.....++|+||||+|||++++.+|+.++.+++.+
T Consensus 323 ~~~g~~~vK~~i-~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 323 DHYGLERVKDRI-LEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred hccCHHHHHHHH-HHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 467888888877 33332111 11112334589999999999999999999999886654
No 126
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.29 E-value=1.2e-06 Score=67.14 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=39.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC-eeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
+..+.-++|+||+||||||+++ +....++.+ .+...+.-+..........+|.+||.-++.
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn~~ 90 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGFNQS 90 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhhhcC
Confidence 3445569999999999999999 444444444 343333333333334457788999986554
No 127
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.29 E-value=6.6e-07 Score=65.68 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
++...++++|.||||||||++++.+|..++.++..+
T Consensus 60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV 95 (327)
T TIGR01650 60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV 95 (327)
T ss_pred HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence 344567899999999999999999999999887654
No 128
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.29 E-value=1.1e-06 Score=61.61 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence 3445556889999999999999999999877666653
No 129
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.29 E-value=4.5e-06 Score=67.18 Aligned_cols=52 Identities=37% Similarity=0.607 Sum_probs=36.7
Q ss_pred ccCCcHHHHHH--HHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTA--IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~--i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
++.|.++.+.+ .+++.+. .....+++|+||||||||++|+++++.....+..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ 82 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSS 82 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCccee
Confidence 47788887653 2233221 1223469999999999999999999998776544
No 130
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.28 E-value=6.2e-07 Score=61.95 Aligned_cols=36 Identities=17% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 61 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV 61 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence 344555689999999999999999999987776765
No 131
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.28 E-value=1e-06 Score=60.60 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 3445556899999999999999999999877766653
No 132
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.28 E-value=2.8e-06 Score=58.80 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+..++|+||+|||||+++++++....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999998764
No 133
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=5.6e-06 Score=61.56 Aligned_cols=48 Identities=25% Similarity=0.434 Sum_probs=37.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+... ..+.+++|+||+|+|||++++++++.+..
T Consensus 18 ~iig~~~~~~~l-~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 18 DVVGQSHITNTL-LNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred hcCCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 588999988776 4443221 23567999999999999999999998865
No 134
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.28 E-value=1.4e-06 Score=58.50 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=23.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-+++.|||||||||+++.++..++..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47889999999999999999988654
No 135
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.7e-06 Score=67.10 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=36.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ +..+.. + ..+..++|+||+|+||||+|+++|+.+..
T Consensus 22 dliGq~~vv~~L-~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 22 ELQGQEVLVKVL-SYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred HhcCcHHHHHHH-HHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 588999988876 332221 1 23557999999999999999999999864
No 136
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.28 E-value=1.3e-06 Score=59.63 Aligned_cols=67 Identities=21% Similarity=0.330 Sum_probs=46.1
Q ss_pred hHHHHHhCCCCC--ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh----HHHHHHHHHH
Q psy3632 43 PEVVEQLGCQHV--KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES----EANVRRLFAD 109 (121)
Q Consensus 43 ~~~~~~~~~~~~--~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~f~~ 109 (121)
++.++++.+..+ .-+.++||+|+||||+.|.|..+..++.+.+......++..-+.. .+.|-.+||+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence 455566554444 447889999999999999999999999888765555554443332 3344446654
No 137
>KOG0991|consensus
Probab=98.28 E-value=1.7e-06 Score=60.99 Aligned_cols=45 Identities=29% Similarity=0.536 Sum_probs=33.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
||.|.++.+..+ . ++..-| .-.++++.||||+||||.+.++|+++
T Consensus 28 dIVGNe~tv~rl-~-----------via~~g--nmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 28 DIVGNEDTVERL-S-----------VIAKEG--NMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HhhCCHHHHHHH-H-----------HHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence 688888887766 1 111111 13369999999999999999999986
No 138
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.7e-06 Score=68.63 Aligned_cols=48 Identities=27% Similarity=0.383 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+... +.+..++|+||+|+|||++|+++|+.+..
T Consensus 16 dVIGQe~vv~~L-~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 16 ELVGQNHVSRAL-SSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 699999987776 4443211 23456899999999999999999999864
No 139
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.6e-06 Score=67.16 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=35.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.++.++.+ ...+... ..+..++|+||||+||||+|+++|+.+.
T Consensus 15 dvvGq~~v~~~L-~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 15 EVVGQEHVKEVL-LAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HhcChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999887776 4443321 2234479999999999999999999885
No 140
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=1.4e-06 Score=60.89 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 63 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 34455666999999999999999999999887767653
No 141
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.26 E-value=2.2e-06 Score=63.34 Aligned_cols=51 Identities=29% Similarity=0.544 Sum_probs=37.6
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+++|+ +|.|.++.++.+....+. ....+++|.|+||+|||++++++++.+.
T Consensus 4 ~~~f~--~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP 54 (334)
T PRK13407 4 PFPFS--AIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred CCCHH--HhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence 44555 589999988876221110 1124799999999999999999999984
No 142
>PRK03839 putative kinase; Provisional
Probab=98.26 E-value=8.4e-07 Score=59.68 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
|+|.|+||+||||+++.+|..++.+++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~i 29 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYV 29 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 889999999999999999999987753
No 143
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=3.2e-07 Score=63.15 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+. .+.|.||+|+||||+++++++.+.+..+.+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 56 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 3444 678999999999999999999887766665
No 144
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.26 E-value=1.6e-06 Score=61.80 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=43.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc-hhHHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG-ESEANVRRLFADA 110 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~f~~a 110 (121)
.+.....+.|+|.+||||||++|++.+...+..+.+...+..+..... +..+.+.++.+..
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~V 96 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKV 96 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHh
Confidence 344556699999999999999999999999999998766554433322 2334466665553
No 145
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1e-06 Score=67.16 Aligned_cols=45 Identities=31% Similarity=0.607 Sum_probs=35.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
||.|.+..++.+ . .......+++++||||||||++++-+...+.+
T Consensus 180 DV~GQ~~AKrAl-e---------------iAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 180 DVKGQEQAKRAL-E---------------IAAAGGHNLLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred hhcCcHHHHHHH-H---------------HHHhcCCcEEEecCCCCchHHhhhhhcccCCC
Confidence 689999888877 1 12223557999999999999999999988765
No 146
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=2.1e-07 Score=66.89 Aligned_cols=60 Identities=25% Similarity=0.342 Sum_probs=44.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-----hhhchhHHHHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-----KYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~f~~a~~~ 113 (121)
+.-..++|++|+|||+++++||+...++.+.+.-.+.... -+...-.+++..+||+||--
T Consensus 24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF 88 (352)
T COG4148 24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88 (352)
T ss_pred CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccc
Confidence 3446799999999999999999999998887743333321 13444567788999998753
No 147
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.25 E-value=2.9e-07 Score=63.81 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 57 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555689999999999999999999887766655
No 148
>PHA02244 ATPase-like protein
Probab=98.25 E-value=2e-06 Score=64.16 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=27.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
...++|+||+|||||++|+++|..++.++..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~ 149 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYF 149 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999999888655
No 149
>PRK14530 adenylate kinase; Provisional
Probab=98.25 E-value=1.3e-06 Score=60.50 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.|++.||||+||||+++.||..++..+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~ 31 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEH 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 589999999999999999999998654
No 150
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.24 E-value=1.5e-06 Score=60.17 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=30.9
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (221)
T TIGR02211 26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL 63 (221)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 34455666889999999999999999999877767653
No 151
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.24 E-value=1e-06 Score=60.66 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 445566699999999999999999999987766655
No 152
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.24 E-value=9.5e-07 Score=56.88 Aligned_cols=23 Identities=43% Similarity=0.972 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++++|||||||||+++.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68899999999999999998887
No 153
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-06 Score=70.14 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+|.|.+..++.+ +..+... +.+..+||+||+||||||+|+++|+.+...
T Consensus 17 dIIGQe~Iv~~L-knaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 17 QMVGQSHVLHAL-TNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred HhcCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 589999988876 4433211 224457999999999999999999998653
No 154
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=1.6e-07 Score=69.80 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
.+..+..+.|.||+||||||++++||+...+..+.+...
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~ 64 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG 64 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 344455588999999999999999999988877776433
No 155
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=9.8e-07 Score=60.67 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (210)
T cd03269 22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57 (210)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555688999999999999999999887666654
No 156
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.23 E-value=4.4e-06 Score=58.13 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.....++|+||+|||||++++++++..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999876
No 157
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.23 E-value=3.9e-07 Score=62.99 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++ .+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA 62 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 34443 344555699999999999999999999987766654
No 158
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.23 E-value=1e-06 Score=59.77 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+|||||++++++...+..+.+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 49 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV 49 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE
Confidence 345556689999999999999999999987766665
No 159
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.23 E-value=4.2e-07 Score=66.05 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i 50 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA 50 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555688999999999999999999988776765
No 160
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.22 E-value=3e-06 Score=56.91 Aligned_cols=29 Identities=41% Similarity=0.670 Sum_probs=25.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
...|+|+|++|+||||+++.+|..++.++
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~ 32 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF 32 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcE
Confidence 34699999999999999999999987664
No 161
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.22 E-value=2.6e-06 Score=62.25 Aligned_cols=47 Identities=34% Similarity=0.556 Sum_probs=34.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+.. ....+++|+||||||||++|+++++.+..
T Consensus 16 ~~~g~~~~~~~L-~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 16 DILGQDEVVERL-SRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HhcCCHHHHHHH-HHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 578888877776 433321 11236999999999999999999998753
No 162
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1e-06 Score=61.65 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 57 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555699999999999999999999987766665
No 163
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1.9e-06 Score=60.37 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 58 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 344555689999999999999999999987666655
No 164
>PRK10908 cell division protein FtsE; Provisional
Probab=98.22 E-value=1.9e-06 Score=59.83 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=30.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3455566899999999999999999999877767653
No 165
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.22 E-value=1.1e-06 Score=60.23 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI 57 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 344555699999999999999999999987776765
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.22 E-value=2e-06 Score=69.52 Aligned_cols=60 Identities=27% Similarity=0.399 Sum_probs=40.2
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHhCC----CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGC----QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
|.|.++.++.+ .+.+... ..|+ +|...++|+||||||||.+|+++|..++.+++. ++.++
T Consensus 460 ViGQ~~ai~~l-~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~-id~se 523 (758)
T PRK11034 460 VFGQDKAIEAL-TEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR-FDMSE 523 (758)
T ss_pred EeCcHHHHHHH-HHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE-eechh
Confidence 56777777776 3333211 1122 223468999999999999999999999877544 44443
No 167
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.21 E-value=1.1e-06 Score=61.43 Aligned_cols=36 Identities=25% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV 57 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence 344455688999999999999999999987766665
No 168
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.21 E-value=1.2e-06 Score=60.20 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+...+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 344556889999999999999999999877666653
No 169
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.9e-06 Score=66.29 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=36.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+... +.+..++|+||+|+|||++|+++|+.+..
T Consensus 17 diiGq~~~v~~L-~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 17 EVAGQQHALNSL-VHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 588999988876 4333211 23445899999999999999999998753
No 170
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=2.8e-06 Score=57.90 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=35.6
Q ss_pred hHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 43 PEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 43 ~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
..+|..+++ .+..-+.+.||+|+|||||.|.+|+.+.+..+.+...
T Consensus 15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 344555544 4455588999999999999999999999998887444
No 171
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.21 E-value=1.3e-06 Score=60.64 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 62 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI 62 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 344455699999999999999999999987766655
No 172
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.21 E-value=5.6e-06 Score=61.25 Aligned_cols=58 Identities=22% Similarity=0.443 Sum_probs=40.3
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+++..+ .+.|-+++++++ ...+...+. + ..+.+++++||||||||++++.++..+.
T Consensus 8 l~~~~~p~--~l~gRe~e~~~l-~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 8 LEPDYVPD--RIVHRDEQIEEL-AKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CCCCCCCC--CCCCcHHHHHHH-HHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444444 489999999988 433322111 1 2345799999999999999999998764
No 173
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.21 E-value=3.8e-07 Score=63.86 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.+.||+|+|||||++++++...+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 58 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 345566699999999999999999999987666654
No 174
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.20 E-value=1.2e-06 Score=59.96 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 55 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV 55 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 44455689999999999999999999987766765
No 175
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.20 E-value=3.2e-06 Score=62.73 Aligned_cols=55 Identities=25% Similarity=0.473 Sum_probs=41.0
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+.+.|+ +|.|.++.+..++...+ . +...|++|.|++|||||+++|+++..+..
T Consensus 10 ~~~~~pf~--~ivGq~~~k~al~~~~~-~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 10 ERPVFPFT--AIVGQEEMKLALILNVI-D-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred cCCCCCHH--HHhChHHHHHHHHHhcc-C-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 34566666 59999998887733222 1 12347999999999999999999998754
No 176
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.20 E-value=1.3e-06 Score=60.27 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 56 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 344455689999999999999999999987766665
No 177
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3e-06 Score=66.03 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=36.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+... +.+..++|+||+|+||||+|+++|+.+..
T Consensus 17 divGq~~v~~~L-~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 17 ELVGQEHVVRAL-TNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 589999988876 4433221 23445899999999999999999999854
No 178
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.20 E-value=1.3e-06 Score=60.14 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v 57 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344556689999999999999999999987665654
No 179
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.20 E-value=1.7e-06 Score=60.18 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh-----cCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML-----NAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~-----~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+ .+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 62 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE
Confidence 34455568999999999999999999998 6666665
No 180
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.19 E-value=1.4e-06 Score=60.68 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|||||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI 57 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 344556699999999999999999999987766665
No 181
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.19 E-value=1.3e-06 Score=60.39 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 345556699999999999999999999987666654
No 182
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=2.1e-06 Score=57.37 Aligned_cols=41 Identities=17% Similarity=0.362 Sum_probs=32.6
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
+.+.+...+.+.||+|+||||+++++++.+.+..+.+...+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g 63 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG 63 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence 34455666999999999999999999999887777664333
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.19 E-value=1.6e-06 Score=58.29 Aligned_cols=39 Identities=23% Similarity=0.346 Sum_probs=31.7
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+.+.++..+.+.||+|+||||+++++++...+..+.+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 344556679999999999999999999998877776543
No 184
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.18 E-value=1.4e-06 Score=58.49 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
|+++|||||||||+++.+|..++... ++.++++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~---is~~d~lr 35 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH---LSAGDLLR 35 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE---EECChHHH
Confidence 68899999999999999999997542 44444443
No 185
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=1.4e-06 Score=60.93 Aligned_cols=36 Identities=14% Similarity=0.300 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 66 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV 66 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 344455688999999999999999999987766665
No 186
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.18 E-value=2.3e-06 Score=59.57 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=30.4
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i 67 (228)
T PRK10584 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV 67 (228)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE
Confidence 3445566699999999999999999999987766665
No 187
>PRK14531 adenylate kinase; Provisional
Probab=98.18 E-value=1.9e-06 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.++++|||||||||+++.+|..++...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 589999999999999999999998664
No 188
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.18 E-value=4.3e-06 Score=60.81 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=37.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
++.|.++..+.+ ...+. + + ..+..++++||||+|||++++++++.++.++..
T Consensus 22 ~~~~~~~~~~~l-~~~~~----------~-~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~ 73 (316)
T PHA02544 22 ECILPAADKETF-KSIVK----------K-G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLF 73 (316)
T ss_pred HhcCcHHHHHHH-HHHHh----------c-C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence 588888877776 43332 1 1 223456669999999999999999998766444
No 189
>KOG2004|consensus
Probab=98.18 E-value=3.9e-06 Score=66.78 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=52.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHh-CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC-----cccc-
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQL-GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG-----PQVL- 92 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~-----~~~~- 92 (121)
|.-||+++++.+ -+.+.-. .+ +-..+.-++|+||||.|||+++|.||+.++..|+.+.-+ +++.
T Consensus 412 DHYgm~dVKeRI-LEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 412 DHYGMEDVKERI-LEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred cccchHHHHHHH-HHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 467899988887 4443222 11 111233477899999999999999999999988775222 2222
Q ss_pred --hhhhchhHHHHHHHHHH
Q psy3632 93 --DKYVGESEANVRRLFAD 109 (121)
Q Consensus 93 --~~~~~~~~~~i~~~f~~ 109 (121)
..|+|.+.-++-+..+.
T Consensus 483 HRRTYVGAMPGkiIq~LK~ 501 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKK 501 (906)
T ss_pred cceeeeccCChHHHHHHHh
Confidence 24777776665555544
No 190
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3e-06 Score=67.53 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=37.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 17 dIIGQe~vv~~L-~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 17 DLVGQEHVVKAL-QNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 699999988877 4443321 33557999999999999999999998754
No 191
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.5e-06 Score=60.96 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=29.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555689999999999999999999987665654
No 192
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.18 E-value=1.7e-06 Score=60.27 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 57 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344555689999999999999999999987766654
No 193
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.6e-06 Score=59.69 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 57 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 344455688999999999999999999987766655
No 194
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.18 E-value=7e-07 Score=61.10 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+||||+++++++...+..+.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 59 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL 59 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE
Confidence 3445566999999999999999999999877767653
No 195
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=1.7e-06 Score=58.25 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3444556889999999999999999999887767654
No 196
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.17 E-value=5.5e-07 Score=57.70 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+...++++|++|+||||+++++++......+.+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i 42 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI 42 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE
T ss_pred EcCCCEEEEEccCCCccccceeeeccccccccccc
Confidence 44566799999999999999999999987765665
No 197
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=4e-06 Score=66.01 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=36.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ ...+.. -..+..++|+||+|+|||++|+++|+.+.
T Consensus 17 dIIGQe~iv~~L-~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 17 QIIGQELIKKIL-VNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HhcCcHHHHHHH-HHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999888776 433321 12345699999999999999999999874
No 198
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.9e-06 Score=66.46 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=36.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+.. + +.+..++|+||+|+||||+|+++|+.+..
T Consensus 17 eivGQe~i~~~L-~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 17 DITAQEHITHTI-QNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HhcCcHHHHHHH-HHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 588999888876 443321 1 33456999999999999999999998854
No 199
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.17 E-value=1.6e-06 Score=59.08 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=42.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD 109 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~ 109 (121)
.+....-+.+.||+|+||||+...||+...+..+.+...+..... ....++-+.++||+
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~-~~P~~RPVSmlFQE 79 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA-SPPAERPVSMLFQE 79 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc-CCcccCChhhhhhc
Confidence 344455699999999999999999999988888877433333322 22345668888886
No 200
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.17 E-value=1.9e-06 Score=60.06 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 64 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence 344555689999999999999999999887766665
No 201
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=1.7e-06 Score=61.46 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 58 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344555699999999999999999999987666654
No 202
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.16 E-value=1.8e-06 Score=58.43 Aligned_cols=27 Identities=37% Similarity=0.794 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.+++.||||+||||+|+.||..++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 489999999999999999999976553
No 203
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.16 E-value=2.8e-06 Score=56.90 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
+.+...+.+.||+|+|||||++++++.+.+..+.+...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~ 62 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 34455689999999999999999999988777765433
No 204
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.16 E-value=1.8e-06 Score=57.44 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=31.5
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+.+...+.|.||+|+||||+++++++...+..+.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~ 58 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 34555667999999999999999999999887777654
No 205
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=5.3e-07 Score=64.83 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=30.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 65 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3445566999999999999999999999887777663
No 206
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=1.6e-06 Score=60.10 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=29.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 61 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV 61 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555689999999999999999999987666654
No 207
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.16 E-value=1.7e-06 Score=58.36 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3445556899999999999999999999887777653
No 208
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.16 E-value=1.5e-06 Score=60.93 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=33.2
Q ss_pred ChHHHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 42 PPEVVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 42 ~~~~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...+++++.+. ++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i 78 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 34456665544 455688999999999999999999887665554
No 209
>PRK06547 hypothetical protein; Provisional
Probab=98.16 E-value=1e-05 Score=54.43 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
..+.-|++.|++||||||+++.++..++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~ 43 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQL 43 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3455688899999999999999999987653
No 210
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=2.6e-06 Score=59.45 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.+.||+|+||||+++++++.+.+..+.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE
Confidence 3445556899999999999999999999877767653
No 211
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=1.9e-06 Score=60.56 Aligned_cols=36 Identities=25% Similarity=0.554 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344556699999999999999999999987766665
No 212
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.15 E-value=2e-06 Score=58.65 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=30.5
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+||||+++++++...+..+.+
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (195)
T PRK13541 21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57 (195)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 3445566689999999999999999999987776665
No 213
>PRK13946 shikimate kinase; Provisional
Probab=98.15 E-value=5e-06 Score=56.30 Aligned_cols=30 Identities=27% Similarity=0.432 Sum_probs=26.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
...|+++|++||||||+++.+|..++.+++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 356999999999999999999999988753
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2.5e-06 Score=59.34 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=32.2
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+ .+...+.+.||+|+|||||++++++.+.+..+.+.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 3444443 44455899999999999999999999877767653
No 215
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=4.3e-06 Score=65.79 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=36.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+|.|.+.+++.+ +..+.. + +.+..++|+||+|+||||+|+++|+.+.
T Consensus 14 eivGq~~i~~~L-~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 14 EVVGQEHVTEPL-SSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HhcCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999888876 443321 1 2334589999999999999999999875
No 216
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.15 E-value=2.3e-06 Score=57.83 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=31.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 57 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE 57 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence 4455667899999999999999999999888777764
No 217
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.15 E-value=2e-06 Score=59.00 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.+.||+|+|||||++++++.+.+..+.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~ 59 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL 59 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3444556899999999999999999999887777653
No 218
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.15 E-value=2e-06 Score=60.38 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (241)
T PRK10895 25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60 (241)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 445566699999999999999999999987766655
No 219
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.15 E-value=5.2e-07 Score=69.87 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=41.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh---hchhHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY---VGESEANVRRLFADAE 111 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~f~~a~ 111 (121)
+..+..+.|+|++||||||++|++++...+..+.+...+...... .....+.++.+||+..
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~ 377 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY 377 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence 344555889999999999999999999988877764433222111 2223455666777643
No 220
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.14 E-value=3.1e-06 Score=60.36 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 69 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS 69 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3445566899999999999999999999877767653
No 221
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.14 E-value=3e-06 Score=56.84 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=24.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
+-++|+|+||+||||+++.++..++..++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~ 31 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWL 31 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence 35889999999999999999999866543
No 222
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.14 E-value=2.1e-06 Score=60.39 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 61 (241)
T PRK14250 25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3444556899999999999999999999877767653
No 223
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=1.8e-06 Score=64.12 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=30.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.....+.|.||+||||||++++||+...+..+.+.
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 64 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence 3445556899999999999999999999988777663
No 224
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.14 E-value=5.4e-07 Score=65.51 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i 61 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555699999999999999999999987766665
No 225
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.14 E-value=2.8e-06 Score=57.14 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=24.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|...++|+||+|+|||.+|+++|..+..
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3456899999999999999999999984
No 226
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=2e-06 Score=60.03 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=30.7
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 56 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL 56 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4455666799999999999999999999987766654
No 227
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.13 E-value=2.1e-06 Score=57.25 Aligned_cols=36 Identities=25% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 445566699999999999999999999987766654
No 228
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=6.8e-07 Score=64.12 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 62 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence 344556699999999999999999999987776665
No 229
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=2.2e-06 Score=57.42 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 3445556999999999999999999999877666653
No 230
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.13 E-value=2.2e-06 Score=59.92 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 42 (230)
T TIGR01184 7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV 42 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 344556699999999999999999999987766665
No 231
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.13 E-value=2.1e-06 Score=58.93 Aligned_cols=36 Identities=22% Similarity=0.287 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 57 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 344555688999999999999999999887666655
No 232
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.6e-06 Score=66.17 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=37.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.++.++.+ +..+... +.+..+||+||+|+||||+++.+|+.+..
T Consensus 17 dVIGQe~vv~~L-~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 17 TLVGQEHVVRAL-THALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHcCcHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 699999988877 4444321 22445899999999999999999999864
No 233
>PRK06893 DNA replication initiation factor; Validated
Probab=98.13 E-value=3.6e-06 Score=58.93 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=21.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..++|+||||||||+++.++|+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999886
No 234
>PRK06217 hypothetical protein; Validated
Probab=98.13 E-value=2.2e-06 Score=57.97 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.|+|.|+|||||||+++.++..++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~ 29 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPH 29 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 489999999999999999999998764
No 235
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.13 E-value=2e-06 Score=59.58 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.....+.|.||+|+||||+++++++...+..+.+
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 344556689999999999999999999987776765
No 236
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.13 E-value=2.7e-06 Score=63.01 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.++..+.+.||+|+|||||+++|++...+..+.+.
T Consensus 28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 444556889999999999999999999988777763
No 237
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.12 E-value=2.2e-06 Score=60.54 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4455666999999999999999999999877666653
No 238
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=2.9e-06 Score=62.83 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~ 63 (343)
T PRK11153 28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63 (343)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 344555889999999999999999999887767653
No 239
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=2.3e-06 Score=60.10 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.+.||+|+|||||++++++.+.+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 344556688999999999999999999987766655
No 240
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.12 E-value=3.4e-06 Score=58.60 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+.
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 72 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL 72 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 3444556899999999999999999999877777653
No 241
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.12 E-value=3.1e-06 Score=60.48 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++...+..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 344455699999999999999999999987666654
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.12 E-value=3.1e-06 Score=59.22 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.++..+.+.||+|+|||||++++++.+.+..+.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 444556999999999999999999999877666653
No 243
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.12 E-value=3.5e-06 Score=66.86 Aligned_cols=61 Identities=21% Similarity=0.498 Sum_probs=43.0
Q ss_pred cccCCccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 2 EVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 2 e~~~~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+++..+.+..|+.-++. +.|.++.++.+ ...+. ..++++++||||||||+++++++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~--vigq~~a~~~L-~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 16 DFETTSDIEVPERLIDQ--VIGQEHAVEVI-KKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccceecccCcccHHH--cCChHHHHHHH-HHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 34455556556655554 78888877765 33222 1236999999999999999999998754
No 244
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=3.4e-06 Score=62.10 Aligned_cols=40 Identities=18% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+..+..+.|+|++|||||||+++|++.+....+.+...+
T Consensus 37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g 76 (327)
T PRK11308 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 3444556999999999999999999999877767654333
No 245
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=2.3e-06 Score=58.84 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=30.5
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i 55 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4455566799999999999999999999987766654
No 246
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=3.3e-06 Score=59.00 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=30.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+||||++++|++...+..+.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~ 59 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 3445566899999999999999999999877767653
No 247
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.12 E-value=2.2e-06 Score=61.02 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+..+..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i 69 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 344455699999999999999999999987766665
No 248
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.12 E-value=2.4e-06 Score=59.96 Aligned_cols=36 Identities=19% Similarity=0.439 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 58 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344566688999999999999999999987766655
No 249
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.12 E-value=2.5e-06 Score=59.73 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=31.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 61 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 34455566999999999999999999999877777653
No 250
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.12 E-value=2.1e-06 Score=63.86 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=31.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
.+.....+.|.||+||||||++++||+...+..+.+..
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 34445568999999999999999999998887776643
No 251
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.12 E-value=3.8e-06 Score=60.05 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=30.3
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+|||||+++|++...+..+.+
T Consensus 33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i 69 (268)
T PRK10419 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 3445566699999999999999999999887766665
No 252
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=7.3e-06 Score=60.36 Aligned_cols=47 Identities=30% Similarity=0.483 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.++.++.+ ...+... ..+..++|+||||+|||++++++++.+.
T Consensus 15 ~iig~~~~~~~l-~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 15 DVIGQEHIVQTL-KNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred hccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999988877 4443211 2345689999999999999999999875
No 253
>PRK06620 hypothetical protein; Validated
Probab=98.12 E-value=6.8e-06 Score=57.11 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.++|+||+|||||+++++++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 56999999999999999999987653
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.12 E-value=3.5e-06 Score=58.34 Aligned_cols=37 Identities=14% Similarity=0.244 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.+.||+|+||||+++++++...+..+.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 3445556889999999999999999999877766653
No 255
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.11 E-value=3.5e-06 Score=58.63 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 37 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV 37 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 34566799999999999999999999887666654
No 256
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.11 E-value=5.2e-06 Score=64.53 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=25.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.+-++|+||+||||||.++++|++++....
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 345678999999999999999999987543
No 257
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.11 E-value=2.3e-06 Score=55.86 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=30.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 58 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence 4455666899999999999999999999887767653
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.11 E-value=2.6e-06 Score=59.44 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC----CCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA----REPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~----~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+ ..+.+
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i 47 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI 47 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE
Confidence 4455667999999999999999999999876 45654
No 259
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.11 E-value=2.4e-06 Score=60.39 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=30.8
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.+..+..++|.||+|+|||||++++++...+..+.+.
T Consensus 24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (253)
T TIGR02323 24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61 (253)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 34455666999999999999999999999877766653
No 260
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.11 E-value=2.4e-06 Score=58.98 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=31.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 55 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 4556677799999999999999999999987766654
No 261
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.2e-06 Score=65.26 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=36.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ +..+... +.+..++|+||+|+||||+++++|+.+..
T Consensus 17 dviGQe~vv~~L-~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 17 EMVGQEHVVQAL-TNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 588988887776 4433221 22445899999999999999999998853
No 262
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.11 E-value=4.2e-06 Score=56.54 Aligned_cols=34 Identities=32% Similarity=0.612 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
|+++||||+||||+++.||..++... ++..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~---i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH---ISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE---EECcHHHH
Confidence 78999999999999999999987553 44444443
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.11 E-value=2.7e-06 Score=58.04 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV 57 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 345556699999999999999999999987666655
No 264
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.11 E-value=2.8e-06 Score=58.21 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=32.1
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +.++..+.+.||+|+||||+++++++...+..+.+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 344443 45556699999999999999999999987776654
No 265
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.11 E-value=2.5e-06 Score=58.95 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=30.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+..+..+.+.||+|+||||+++++++.+.+..+.+
T Consensus 32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 68 (214)
T PRK13543 32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI 68 (214)
T ss_pred EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence 3445556699999999999999999999987766655
No 266
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.11 E-value=6.2e-06 Score=66.53 Aligned_cols=34 Identities=29% Similarity=0.552 Sum_probs=27.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.++|+||+|+|||++|+++|..++.++.. ++.++
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~-~d~se 519 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLER-FDMSE 519 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEE-EeCch
Confidence 48899999999999999999999766443 44443
No 267
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5.9e-06 Score=65.64 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=36.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ ...+... +.+..++|+||+|+||||+|+++|+.+..
T Consensus 17 divGQe~vv~~L-~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 17 EVVGQEHVLTAL-ANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 599999988876 4333211 22345899999999999999999998865
No 268
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=1.1e-05 Score=56.80 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=22.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..++|+||+|||||++++++++...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999998765
No 269
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.10 E-value=2.7e-06 Score=59.93 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=29.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 60 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI 60 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 344455688999999999999999999887666654
No 270
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.10 E-value=2.4e-06 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++++||+||||||+++.+++.++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 5789999999999999999998743
No 271
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.10 E-value=3.5e-06 Score=62.86 Aligned_cols=40 Identities=15% Similarity=0.298 Sum_probs=32.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+.....+.|.||+||||||++++|++...+..+.+...+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G 54 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG 54 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECC
Confidence 3444556899999999999999999999988877764333
No 272
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.10 E-value=3.6e-06 Score=58.01 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+++++ +.+...+.+.||+||||||+...+|+...+..+.+
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i 62 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI 62 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence 444444 44455689999999999999999999988776765
No 273
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.6e-06 Score=60.22 Aligned_cols=36 Identities=22% Similarity=0.318 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 62 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE
Confidence 344566689999999999999999999987766654
No 274
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.10 E-value=2.7e-06 Score=60.49 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i 59 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 344455688999999999999999999987766665
No 275
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.3e-06 Score=61.16 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 58 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV 58 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE
Confidence 344433 34455689999999999999999999987776765
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.10 E-value=8.2e-06 Score=64.02 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=38.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
|+-||++.+.+++ +.+. .....++ ...+-++|+||||+|||+|+++|+..+.....+
T Consensus 77 d~yGlee~ieriv-~~l~------~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y 133 (644)
T PRK15455 77 EFYGMEEAIEQIV-SYFR------HAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIY 133 (644)
T ss_pred cccCcHHHHHHHH-HHHH------HHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence 5889999999883 2221 1112222 123457789999999999999999988654333
No 277
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.10 E-value=2.9e-06 Score=60.58 Aligned_cols=36 Identities=17% Similarity=0.402 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i 70 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL 70 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 444556699999999999999999999988776765
No 278
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.10 E-value=3.3e-06 Score=54.43 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
|++.|+|||||||+++.+|..++.+++
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~ 28 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYL 28 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 678999999999999999999987753
No 279
>PRK14526 adenylate kinase; Provisional
Probab=98.10 E-value=4.8e-06 Score=57.82 Aligned_cols=33 Identities=27% Similarity=0.624 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
++|+|||||||||+++.+|..++... ++.++++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~---is~G~ll 35 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYH---ISTGDLF 35 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce---eecChHH
Confidence 78999999999999999999887553 3444444
No 280
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.10 E-value=3.3e-06 Score=65.52 Aligned_cols=43 Identities=16% Similarity=0.374 Sum_probs=34.4
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+++++.+ +++..+.++||+||||||+++.+++.+.+..+.+..
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 394 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL 394 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4555544 455569999999999999999999999888777643
No 281
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.10 E-value=1e-05 Score=57.15 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=41.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+|.|+|.+++.+.+... .+ +.=.+..++||+|..|||||+++||+-+++......
T Consensus 61 ~l~Gvd~qk~~L~~NT~-~F---------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 61 DLVGVDRQKEALVRNTE-QF---------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHhCchHHHHHHHHHHH-HH---------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 68999999988844332 11 111356789999999999999999999988665444
No 282
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.10 E-value=2.9e-06 Score=58.41 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+..+..+.|.||+|+||||+++++++...+..+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 59 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 344555689999999999999999999987766665
No 283
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.1e-06 Score=66.44 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=36.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.++.++.+ +..+... +.+..+||+||+|+||||+++++|+.+..
T Consensus 17 EVIGQe~Vv~~L-~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 17 SLVGQEHVVRAL-THALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHcCcHHHHHHH-HHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 599999988877 4433211 22445899999999999999999998854
No 284
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.09 E-value=2.4e-06 Score=64.05 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=30.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.....+.|.||+|||||||+++||+...+..+.+.
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~ 72 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3444556899999999999999999999887767654
No 285
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.09 E-value=2.9e-06 Score=60.24 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV 63 (258)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence 445566699999999999999999999987776765
No 286
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.09 E-value=3.8e-06 Score=59.00 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=28.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
..+++.||||+||||+++.+|..++... ++.++++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~---is~gdllr 42 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKH---INMGNILR 42 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE---EECChHHH
Confidence 4599999999999999999999998664 44455543
No 287
>PRK14527 adenylate kinase; Provisional
Probab=98.09 E-value=5.1e-06 Score=56.46 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=25.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.+.-++++||||+||||+++.+|..++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 345689999999999999999999887654
No 288
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.09 E-value=3.1e-06 Score=58.51 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.+.||+|+||||+++++++...+..+.+
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 61 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence 344555688999999999999999999987666655
No 289
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.09 E-value=4.4e-06 Score=61.40 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=31.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+-..+.++|.||||+|||++++.+|..++.++..+.
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~ 75 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQ 75 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 3445677999999999999999999999999877753
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.8e-06 Score=64.89 Aligned_cols=48 Identities=27% Similarity=0.419 Sum_probs=37.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+.+++.+ ...+... +.+..++|+||+|+|||++|+++|+.+..
T Consensus 25 dliGq~~~v~~L-~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 25 DLIGQEAMVRTL-TNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 589999988877 4433211 23557999999999999999999998754
No 291
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.09 E-value=3e-06 Score=57.81 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~~ 86 (121)
.+.+...++|.||+|+|||||++++++.+ .+..+.+.
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 34556679999999999999999999998 76666653
No 292
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=3e-06 Score=60.61 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=33.3
Q ss_pred ChHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 42 PPEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 42 ~~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...+++++.+ .++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i 81 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV 81 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 3345555544 4455689999999999999999999987766654
No 293
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.08 E-value=3e-06 Score=58.98 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.5
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~ 85 (121)
+.+.+...+.|+||+|+||||+++++++.+. +..+.+
T Consensus 28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i 67 (226)
T cd03234 28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI 67 (226)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE
Confidence 3445566799999999999999999999987 555544
No 294
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.08 E-value=5.8e-06 Score=57.62 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=47.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh-hchhHHHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY-VGESEANVRRLFADAE 111 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~f~~a~ 111 (121)
+.....+.+.|.+|+||||++.++|+.+.++.+.+.....-+.++ .......+..+||+..
T Consensus 29 I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~ 90 (263)
T COG1101 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL 90 (263)
T ss_pred ecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence 344556889999999999999999999999988885444444444 4455677999999764
No 295
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=3.1e-06 Score=58.42 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=30.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.+ ..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 54 (214)
T cd03297 19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI 54 (214)
T ss_pred EEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 44566 7799999999999999999999987666654
No 296
>PLN02200 adenylate kinase family protein
Probab=98.08 E-value=7e-06 Score=57.82 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
..+..+++.|||||||||+|+.+|..++... ++.++++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h---is~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH---LSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE---EEccHHHH
Confidence 3345688999999999999999999987642 45555553
No 297
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.08 E-value=3.2e-06 Score=59.30 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i 59 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV 59 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence 344555688999999999999999999987766655
No 298
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=3e-06 Score=60.43 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=29.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i 68 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 344555688999999999999999999987666654
No 299
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.08 E-value=2.8e-06 Score=60.79 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344555689999999999999999999987666654
No 300
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.08 E-value=4.4e-06 Score=61.61 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+.....+.|.|++||||||++++|++.+....+.+..
T Consensus 44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~ 80 (331)
T PRK15079 44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 (331)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence 3445558999999999999999999998877776643
No 301
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.07 E-value=2.9e-06 Score=63.38 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.....+.|.||+|||||||+++|++.+.+..+.+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I 60 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL 60 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 344455689999999999999999999987766665
No 302
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.07 E-value=3.6e-06 Score=58.25 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 58 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence 344433 44555689999999999999999999987665654
No 303
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.07 E-value=7.4e-06 Score=56.39 Aligned_cols=25 Identities=40% Similarity=0.445 Sum_probs=22.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-+.+.||+||||||+++++++.+..
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4778999999999999999998864
No 304
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.07 E-value=7.5e-06 Score=64.03 Aligned_cols=53 Identities=21% Similarity=0.383 Sum_probs=38.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
..++|+|.+||||||+.+.+|..++.++ ++....+....|.+ +.++|++--+.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~f---iD~D~~ie~~~g~s---i~eif~~~Ge~ 59 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPF---ADADVEIEREIGMS---IPSYFEEYGEP 59 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCE---EEchHHHHHHHCcC---HHHHHHHHHHH
Confidence 3589999999999999999999999886 44455555555544 66666554333
No 305
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.07 E-value=1.4e-06 Score=59.76 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.|++|+||||+++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV 57 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344555699999999999999999999987776665
No 306
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=7.8e-06 Score=65.59 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+.+++.+ +..+... ..+..+||+||+|+|||++|+++|+.+..
T Consensus 19 dIiGQe~~v~~L-~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 19 DIVGQDHIVQTL-KNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 689999988876 4444321 23456899999999999999999998754
No 307
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=4.2e-06 Score=59.79 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i 66 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 344555688999999999999999999987766655
No 308
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.06 E-value=3.9e-06 Score=52.74 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy3632 57 ILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|+|.|+||+||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 309
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=3e-06 Score=59.30 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 62 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence 445566699999999999999999999987666654
No 310
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.06 E-value=3.2e-06 Score=58.93 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.5
Q ss_pred hhccCCChHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 36 FASRVFPPEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 36 i~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+........+++++.+ .+...+.|.||+|+||||+++++++...+..+.+
T Consensus 28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i 79 (224)
T cd03220 28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79 (224)
T ss_pred hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3334444456666544 4455689999999999999999999887766665
No 311
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9e-06 Score=62.31 Aligned_cols=48 Identities=31% Similarity=0.426 Sum_probs=36.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+... ..+..++|+||+|+|||++|+++|+.+..
T Consensus 18 diiGq~~~v~~L-~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 18 EILGQDAVVAVL-KNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HhcCcHHHHHHH-HHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 699999988876 4443211 23456999999999999999999998743
No 312
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=3.2e-06 Score=61.03 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 68 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 344455699999999999999999999987766665
No 313
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9.2e-06 Score=63.77 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=36.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ +..+... +.+..+||+||+|||||++|+.+|+.+.
T Consensus 17 ~viGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 17 DVVGQEHITKTL-KNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred hccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999988876 4443221 2345689999999999999999999875
No 314
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.06 E-value=3.3e-06 Score=62.78 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=30.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.....+.|.||+|||||||+++|++.+.+..+.+.
T Consensus 24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 60 (353)
T PRK10851 24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR 60 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3445556899999999999999999999887777653
No 315
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.06 E-value=3.5e-06 Score=58.50 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 66 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 3445556999999999999999999999877666653
No 316
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.06 E-value=5.2e-06 Score=65.06 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=35.5
Q ss_pred HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+++++.+ +++..++++|++|+||||+++++++.+.+..+.+..++
T Consensus 357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 35555544 44556999999999999999999999988877764333
No 317
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=3.7e-06 Score=60.19 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 66 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 344555688999999999999999999987766654
No 318
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.06 E-value=3.3e-06 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++++|+||+||||+++.++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 6789999999999999999987653
No 319
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=3.1e-06 Score=63.44 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.....+.|.||+||||||++++||+...+..+.+.
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~ 77 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3445556889999999999999999999877766653
No 320
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=8.3e-06 Score=64.33 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=36.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.++.++.+ +..+... ..+..++|+||+|+|||++++++|+.+.
T Consensus 17 eiiGq~~~~~~L-~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 17 ELVGQEHVVQTL-RNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HhcCCHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999988876 4433211 1234589999999999999999999875
No 321
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.05 E-value=3.7e-06 Score=59.63 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 63 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV 63 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 4445566899999999999999999999877767653
No 322
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=3.2e-06 Score=60.70 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=29.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i 64 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344455688999999999999999999987766665
No 323
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.05 E-value=5e-06 Score=61.26 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC---CCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR---EPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---~~~~~ 86 (121)
.+..+..+.|.|++||||||++++|++.+... .+.+.
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~ 77 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence 34445569999999999999999999998764 45553
No 324
>KOG1969|consensus
Probab=98.05 E-value=9.1e-06 Score=64.83 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=30.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
+-+||+||||-||||||+.+|++.|...+. ++.++-.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvE-INASDeR 363 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE-INASDER 363 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEE-ecccccc
Confidence 347789999999999999999999988666 5555543
No 325
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.05 E-value=1.2e-05 Score=59.50 Aligned_cols=47 Identities=26% Similarity=0.463 Sum_probs=36.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.|.|.++.+..++...+. +...++++.|+||+||||+++++++.+..
T Consensus 5 ~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~ 51 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPE 51 (337)
T ss_pred ccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcc
Confidence 589999988877332221 12457999999999999999999998854
No 326
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.05 E-value=4.4e-06 Score=67.08 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=37.1
Q ss_pred hHHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 43 PEVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 43 ~~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
+...+++.++.+.| +.++|++||||||++|.+.+.+.+..+.+..++
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 45666655555444 999999999999999999999998888774444
No 327
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.05 E-value=5.6e-06 Score=58.61 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
....+.|.||+|+||||++++|++.+.+..+.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i 56 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI 56 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 445588999999999999999999987776665
No 328
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.05 E-value=3.8e-06 Score=58.27 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i 57 (223)
T TIGR03740 22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57 (223)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344556689999999999999999999987666654
No 329
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.05 E-value=1e-05 Score=54.85 Aligned_cols=32 Identities=28% Similarity=0.445 Sum_probs=26.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+.....+++.||+|+||||+++++++.+....
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~ 53 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDE 53 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC
Confidence 34566799999999999999999999886543
No 330
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.05 E-value=5.7e-06 Score=47.41 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy3632 57 ILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+.+.|+||+||||++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999996
No 331
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.05 E-value=1.2e-06 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i 59 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 344455688999999999999999999987777765
No 332
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=9.8e-06 Score=63.81 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+++++.+ ...+.. + +.+..+||+||+|+|||++++++|+.+..
T Consensus 17 ~iiGq~~v~~~L-~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 17 DLTGQEHVSRTL-QNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HccCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 699999888777 444321 1 23456899999999999999999999753
No 333
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.05 E-value=1.1e-06 Score=64.13 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+|+||||++++|++.+.+..+.+
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v 64 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34445588999999999999999999988776655
No 334
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.04 E-value=3.8e-06 Score=59.52 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i 58 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV 58 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence 345566689999999999999999999987766654
No 335
>PRK06526 transposase; Provisional
Probab=98.04 E-value=4e-06 Score=59.72 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.+++|+||||||||+++.+++..+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3567999999999999999999987643
No 336
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.04 E-value=3.5e-06 Score=62.57 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=30.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.....+.|.||+|||||||+++|++.+.+..+.+
T Consensus 19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I 55 (352)
T PRK11144 19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI 55 (352)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3344556689999999999999999999987766665
No 337
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=4e-06 Score=60.31 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+..+..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~ 65 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 3444556899999999999999999999887777663
No 338
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.04 E-value=4.1e-06 Score=59.74 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~ 65 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW 65 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence 3445556999999999999999999999877666653
No 339
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=5.7e-06 Score=62.51 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=29.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+..+..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus 51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~ 86 (400)
T PRK10070 51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86 (400)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence 344455889999999999999999999887777653
No 340
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.04 E-value=5e-06 Score=57.08 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.....+.+.||+|+|||||++++++...+..+.+.
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 66 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence 3444556899999999999999999999877767653
No 341
>PRK06762 hypothetical protein; Provisional
Probab=98.04 E-value=5.8e-06 Score=54.79 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=23.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.-++++|+|||||||+|+.++..++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~ 28 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGR 28 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999854
No 342
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.04 E-value=1.8e-05 Score=59.13 Aligned_cols=50 Identities=26% Similarity=0.476 Sum_probs=35.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.|=+++++++ ...+... +.-..+.+++++||||+|||++++.+++.+.
T Consensus 31 ~l~~Re~e~~~l-~~~l~~~---------~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 31 NLPHREEQIEEL-AFALRPA---------LRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCHHHHHHHH-HHHHHHH---------hCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 477888888887 3333211 1112345699999999999999999998874
No 343
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.03 E-value=4.5e-06 Score=58.83 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.++..+.|.||+|+|||||++++++.+.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 34455568899999999999999999998764
No 344
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.03 E-value=3.5e-06 Score=59.75 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=29.8
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus 25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i 61 (251)
T PRK09544 25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61 (251)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3445566699999999999999999999987665554
No 345
>PRK02496 adk adenylate kinase; Provisional
Probab=98.03 E-value=4.8e-06 Score=56.15 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=23.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+++.|||||||||+++.+|..++..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~ 28 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIP 28 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 38899999999999999999998765
No 346
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.03 E-value=4.7e-06 Score=58.41 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.. .+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 59 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE
Confidence 34445569999999999999999999984 3444544
No 347
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=1.1e-05 Score=63.34 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=37.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+... ..+..++|+||+|+|||++|+++|+.+..
T Consensus 17 diiGqe~iv~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 17 SLEGQDFVVETL-KHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred HccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 699999988877 4444221 23456999999999999999999998753
No 348
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.02 E-value=1e-06 Score=65.23 Aligned_cols=42 Identities=36% Similarity=0.426 Sum_probs=32.3
Q ss_pred HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+++++.+ .++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus 55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i 98 (340)
T PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98 (340)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE
Confidence 34555444 3445588999999999999999999988776665
No 349
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=5.1e-06 Score=58.08 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i 57 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57 (232)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 345566799999999999999999999987766654
No 350
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.02 E-value=4.7e-06 Score=56.44 Aligned_cols=26 Identities=31% Similarity=0.472 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.++|+||+||||||+++.++..++..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCe
Confidence 58899999999999999999987654
No 351
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.02 E-value=5.5e-06 Score=57.16 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=23.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
|+++||||+||||+++.+|..++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~ 27 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH 27 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 78999999999999999999887653
No 352
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.02 E-value=4.5e-06 Score=59.92 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.++..+.|.||+|+|||||+++|++.+.+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 34555668999999999999999999988654
No 353
>KOG1942|consensus
Probab=98.02 E-value=1.3e-05 Score=58.43 Aligned_cols=57 Identities=37% Similarity=0.507 Sum_probs=41.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee-ecCcccchhhhchhHHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEANVRRLFADA 110 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~f~~a 110 (121)
..+.+||.||||||||.+|-+++.+++...... ..+++..+.-+..++-. .+-|..|
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRa 120 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRA 120 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHH
Confidence 467899999999999999999999998753221 34666666666666543 3445544
No 354
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.01 E-value=4.5e-06 Score=62.02 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=30.1
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.....+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I 54 (354)
T TIGR02142 18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54 (354)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 3344555689999999999999999999987766665
No 355
>PRK14528 adenylate kinase; Provisional
Probab=98.01 E-value=6.5e-06 Score=55.93 Aligned_cols=27 Identities=33% Similarity=0.658 Sum_probs=24.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.++++||||+||||+++.++..++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 489999999999999999999987653
No 356
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.01 E-value=4.6e-06 Score=59.67 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=31.8
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++.+. +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 444444 44555689999999999999999999987766654
No 357
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=4.3e-06 Score=59.43 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=32.1
Q ss_pred HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+. .+.-+.+.||+|+|||||+|++.+.+.+..+.+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 44444443 4445889999999999999999998887767653
No 358
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.01 E-value=9.1e-07 Score=64.19 Aligned_cols=42 Identities=24% Similarity=0.453 Sum_probs=33.0
Q ss_pred HHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 44 EVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 44 ~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+++++.+....| +.|.||+|+||||+.+++++...+..+.+
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i 62 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 3444555444444 88999999999999999999998887776
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.01 E-value=1e-05 Score=52.33 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=25.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+..-++|.|+.|+||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344568899999999999999999998764
No 360
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=1.2e-05 Score=63.84 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=37.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++.|.++.++++ +..+.... ++..+.+.++|+|||||||||+++++|+.++..
T Consensus 85 el~~~~~ki~~l-~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 85 ELAVHKKKIEEV-ETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred HhcCcHHHHHHH-HHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 577888877776 44332211 122334458899999999999999999998764
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.01 E-value=1.2e-05 Score=58.21 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=34.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+.+++.+ +..+.. ....+++|+||+|+|||++++++++.+..
T Consensus 18 ~~~g~~~~~~~l-~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 18 EIVGQEEIVERL-KSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HhcCcHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 578888877776 433321 11225899999999999999999998743
No 362
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.1e-05 Score=62.46 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=45.6
Q ss_pred HhhccCCChHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632 35 AFASRVFPPEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY 95 (121)
Q Consensus 35 ~i~~~~~~~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 95 (121)
.+.++-..+..++++++.. +..|.+.|++||||||++..+++.+.+..+++...+.-+..+
T Consensus 343 sF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 343 SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred eeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 3445555566777766554 556999999999999999999999999888875554444443
No 363
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.00 E-value=6.3e-06 Score=55.75 Aligned_cols=29 Identities=41% Similarity=0.707 Sum_probs=23.5
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
....+++|+||+|+|||.+|.+++.++-.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 34568999999999999999999987643
No 364
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.00 E-value=1.1e-05 Score=55.48 Aligned_cols=27 Identities=33% Similarity=0.297 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-|.+.|++||||||++++|++.++.
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~ 32 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445889999999999999999999843
No 365
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.00 E-value=1.5e-05 Score=58.31 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=28.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
+.+...|+|+|++|||||++++.+|..++.+++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 345667999999999999999999999988754
No 366
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=5e-06 Score=59.65 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=30.3
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.++..+.|.||+|+||||+++++++.+....+.+
T Consensus 23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i 59 (275)
T PRK13639 23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence 3445566699999999999999999999987766665
No 367
>PHA00729 NTP-binding motif containing protein
Probab=98.00 E-value=5.8e-06 Score=57.87 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+++++|+||+|||++|.+++..+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 368
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=1.5e-05 Score=61.71 Aligned_cols=47 Identities=28% Similarity=0.460 Sum_probs=36.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ +..+... ..+..++|+||+|+|||++|+.+|..+.
T Consensus 17 diiGq~~i~~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 17 EVIGQEIVVRIL-KNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HccChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999988876 4444221 2234588999999999999999999875
No 369
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.00 E-value=4.9e-06 Score=62.10 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=29.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC--Ceee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE--PKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~--~~~~ 86 (121)
+.....+.|.||+||||||++++||+...+.. +.+.
T Consensus 28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~ 65 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65 (362)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE
Confidence 34455688999999999999999999988777 6653
No 370
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=5.3e-06 Score=59.85 Aligned_cols=42 Identities=17% Similarity=0.372 Sum_probs=32.5
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.+...+.|.||+|+||||++++|++.+.+..+.+.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 65 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT 65 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 344443 344556899999999999999999999887777653
No 371
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=5.6e-06 Score=58.66 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 59 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence 44455689999999999999999999887766654
No 372
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.00 E-value=6.2e-06 Score=65.92 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+++++. ++++..+.++|++||||||+++.+++.+.+..+.+..++
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 514 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 3555544 455666999999999999999999999988878764333
No 373
>PLN02674 adenylate kinase
Probab=98.00 E-value=1.5e-05 Score=56.54 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
...++|.||||+||+|+++.||..++... ++.++++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h---is~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH---LATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE---EchhHHHHH
Confidence 45699999999999999999999998653 445555543
No 374
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=5.3e-06 Score=59.90 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence 344455699999999999999999999987776765
No 375
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.99 E-value=6e-06 Score=51.25 Aligned_cols=23 Identities=43% Similarity=0.928 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|.|+||||+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999887764
No 376
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=5.5e-06 Score=59.44 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 344555699999999999999999999987766665
No 377
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=5.4e-06 Score=59.55 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=29.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.++..+.|.||+|+||||++++|++.+.+..+.+.
T Consensus 27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~ 62 (277)
T PRK13652 27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 (277)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 444556889999999999999999999887777653
No 378
>PRK12377 putative replication protein; Provisional
Probab=97.99 E-value=6.6e-06 Score=58.44 Aligned_cols=28 Identities=39% Similarity=0.650 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+++|+||||||||+|+.++++.+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999988543
No 379
>KOG3347|consensus
Probab=97.99 E-value=6.2e-06 Score=54.29 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=27.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+||++|-|||||||++..+|..++...+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~ 37 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE 37 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence 4579999999999999999999998877543
No 380
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=5.4e-06 Score=59.92 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+..+..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 64 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT 64 (288)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 344556999999999999999999999887777653
No 381
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.99 E-value=9.5e-06 Score=62.47 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=25.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+....+++|.||||||||++|++++...+.
T Consensus 36 alag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 36 ALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 345678999999999999999999997654
No 382
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.99 E-value=6.9e-06 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-++++||||+||||++++|+..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998754
No 383
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=1.6e-05 Score=63.10 Aligned_cols=48 Identities=33% Similarity=0.465 Sum_probs=36.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+... .....+||+||+|+|||++|+++|+.+..
T Consensus 17 ~liGq~~i~~~L-~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 17 ELVGQEAIATTL-KNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 588999888776 4443321 12346999999999999999999999854
No 384
>PRK06921 hypothetical protein; Provisional
Probab=97.99 E-value=2.4e-05 Score=56.09 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+++|+|++|+|||+|+.++|+.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 567999999999999999999998754
No 385
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=1.2e-05 Score=65.57 Aligned_cols=47 Identities=30% Similarity=0.399 Sum_probs=35.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+|.|.+.+++.+ +..+... +.+..+||+||+|||||++++++|+.+.
T Consensus 16 eiiGqe~v~~~L-~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 16 EVIGQEHVTEPL-STALDSG------------RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HhcCcHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 688999888776 4433211 2234589999999999999999999985
No 386
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=5.8e-06 Score=57.94 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v 56 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI 56 (235)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 445566799999999999999999999987766654
No 387
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.98 E-value=1.3e-05 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.++|+|++||||||+++.+|..++.++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~ 30 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRF 30 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 588999999999999999999998764
No 388
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.98 E-value=9.9e-06 Score=55.24 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.+.||+||||||+++++++.++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999873
No 389
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.98 E-value=8.8e-06 Score=54.49 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+..++|.|++||||||+++.++..+..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3456889999999999999999999864
No 390
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.98 E-value=7.8e-06 Score=64.21 Aligned_cols=45 Identities=18% Similarity=0.329 Sum_probs=35.0
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.++++. ++++..+.++||+|+||||+++.+++.+.+..+.+..++
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g 401 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG 401 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 455544 455566999999999999999999999988877764333
No 391
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.98 E-value=1.5e-05 Score=53.20 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=29.0
Q ss_pred cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.|=+++++++ ...+. ...-..++.++++|++|+|||++++.+...+...
T Consensus 2 fvgR~~e~~~l-~~~l~----------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERL-RDLLD----------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHH-HHTTG----------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH-HHHHH----------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45667777776 33331 1122335679999999999999999888877655
No 392
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.98 E-value=6.7e-06 Score=56.91 Aligned_cols=34 Identities=29% Similarity=0.578 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
|+++||||+||||+++.+|..++... ++.++++.
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~---is~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPH---ISTGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE---EECCccHH
Confidence 88999999999999999999998653 44444543
No 393
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.98 E-value=6.6e-06 Score=58.27 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=26.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.++..+.|.||+|+|||||++++++...+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3445556999999999999999999999866
No 394
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=6.6e-06 Score=58.12 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.+...+.|.||+|+|||||++++++.+.+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 3445556889999999999999999998764
No 395
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.98 E-value=7.7e-06 Score=65.60 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=35.0
Q ss_pred HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
.+++++. ++++..+.++||+|+||||+++.+++.+.+..+.+..+
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 3455544 44456699999999999999999999998887776433
No 396
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=6.2e-06 Score=59.31 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=32.0
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++.+ .++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i 67 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV 67 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 4444443 4455588999999999999999999988776765
No 397
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.98 E-value=5.4e-06 Score=56.89 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=29.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~ 85 (121)
.+.+...+.+.||+|+||||+++++++.+. +..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i 67 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI 67 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence 345556699999999999999999999987 455554
No 398
>PRK09183 transposase/IS protein; Provisional
Probab=97.97 E-value=7.1e-06 Score=58.58 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
...+++|+||||||||+++.+++.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999887543
No 399
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=7.3e-06 Score=57.80 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.+.||+|+||||+++++++.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344555689999999999999999999875
No 400
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.97 E-value=6.8e-06 Score=57.65 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=29.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.+...+.|.||+|+||||++++|++.+.+..+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i 57 (237)
T TIGR00968 22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 345566699999999999999999999876655544
No 401
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.97 E-value=1.1e-05 Score=55.96 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.....+.+.||+|+||||++++|++.+.+..+.+.
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~ 63 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK 63 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 344556999999999999999999998877666653
No 402
>PRK08181 transposase; Validated
Probab=97.97 E-value=6.4e-06 Score=59.19 Aligned_cols=28 Identities=43% Similarity=0.759 Sum_probs=24.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
...+++|+||+|||||.|+.+++..+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 3567999999999999999999987643
No 403
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=6.3e-06 Score=59.49 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i 64 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI 64 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 344555689999999999999999999988776765
No 404
>PRK08233 hypothetical protein; Provisional
Probab=97.96 E-value=7.4e-06 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-|.+.|+||+||||+++.++..++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3678899999999999999998863
No 405
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=7.3e-06 Score=53.93 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.+...+++.||+|+||||+++++++.+....+.+.
T Consensus 21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~ 57 (157)
T cd00267 21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57 (157)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 3445567899999999999999999999877766653
No 406
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.96 E-value=1e-05 Score=57.47 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.+...+.+.|++|+|||||++++++.+.+..+.+.
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 79 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV 79 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence 444443 445566999999999999999999999876666653
No 407
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.96 E-value=8.5e-06 Score=65.37 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=34.5
Q ss_pred HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+++++.+ +++..+.++||+||||||+++++++.+.+..+.+.
T Consensus 493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 45555544 44556999999999999999999999988877764
No 408
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.96 E-value=8.3e-06 Score=55.86 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=29.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~~ 86 (121)
.+.++..+.|.||+|+||||+++++++.. .+..+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~ 60 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence 44556669999999999999999999984 45556553
No 409
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=9.9e-06 Score=59.61 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=24.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+..+..+.|.|++||||||++++|++.+.
T Consensus 30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 30 VKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34445588999999999999999999886
No 410
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.96 E-value=1.1e-05 Score=56.51 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=33.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
..-+.+.|++|+||||+.++|++......+.+...+..+..
T Consensus 29 Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~ 69 (237)
T COG0410 29 GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG 69 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCC
Confidence 44488999999999999999999999887887656555543
No 411
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=7.1e-06 Score=60.26 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+ .++..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~ 84 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 4555444 44555999999999999999999999888777663
No 412
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=8.9e-06 Score=58.09 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.++..+.|.||+|+|||||+++|++.+.+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3445566999999999999999999998763
No 413
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=8.6e-06 Score=57.55 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+||||+++++++...
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344555689999999999999999998753
No 414
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.95 E-value=7.5e-06 Score=59.15 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=31.2
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++.+. +.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I 94 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344433 44455689999999999999999999987766654
No 415
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.95 E-value=9.8e-06 Score=55.41 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.-++|+||+||||||+++.+++.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 445689999999999999999999875
No 416
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=7.6e-06 Score=59.19 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.....+.|.||+|+||||+++++++.+.+..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV 64 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 344555699999999999999999999988776765
No 417
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=1.2e-05 Score=59.28 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+..+..+.|.|++|||||||+++|++.+.
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 344455699999999999999999999875
No 418
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.94 E-value=1e-05 Score=57.59 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=29.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+...+.+.||+|+|||||++++++.+.+..+.+
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I 57 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF 57 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence 4455699999999999999999999998887775
No 419
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.94 E-value=1.1e-05 Score=55.01 Aligned_cols=25 Identities=48% Similarity=0.852 Sum_probs=22.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
|.+.||+||||||+|+.|+..++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6789999999999999999999854
No 420
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=1.7e-05 Score=62.71 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=36.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+|.|.+..++.+ +..+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 17 dIiGQe~v~~~L-~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 17 EVAGQETVKAIL-SRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HhcCCHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 588988876665 4444221 22346999999999999999999998854
No 421
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=8.9e-06 Score=57.38 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 345555689999999999999999998765
No 422
>PRK14529 adenylate kinase; Provisional
Probab=97.94 E-value=1.8e-05 Score=55.35 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=24.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.++|.||||+||||+++.|+..++...+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 3889999999999999999999987643
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.94 E-value=7.4e-06 Score=51.05 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=21.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIG 75 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la 75 (121)
+.....++|.||+||||||+++++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3445679999999999999999987
No 424
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.94 E-value=1.1e-05 Score=54.43 Aligned_cols=27 Identities=30% Similarity=0.685 Sum_probs=23.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..++++||+||||||+++++++.++..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 347899999999999999999998763
No 425
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.7e-06 Score=57.52 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=31.1
Q ss_pred HHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 47 EQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 47 ~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++.+.... -..+.||+|+||||++|.+|..+.++.+.+.
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~ 60 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence 334444433 3779999999999999999999988877763
No 426
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.94 E-value=9.9e-06 Score=63.70 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
+++++. ++++..++++|++||||||+++.+++.+.+..+.+..+
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 455544 44455699999999999999999999998887776433
No 427
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=7.1e-06 Score=59.86 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i 64 (305)
T PRK13651 30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI 64 (305)
T ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 34455699999999999999999999988777765
No 428
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=8.7e-06 Score=58.46 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.++..+.|.|++|+|||||++++++.+.+..+.+
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i 64 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 344455699999999999999999999987776665
No 429
>PRK13975 thymidylate kinase; Provisional
Probab=97.93 E-value=4.1e-05 Score=51.94 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=23.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-|+|.|++|+||||+++.++..++..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999999753
No 430
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.93 E-value=4e-05 Score=54.64 Aligned_cols=29 Identities=41% Similarity=0.669 Sum_probs=25.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
...+++|+||||+|||.|+-|++..+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~ 132 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA 132 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 56689999999999999999999998743
No 431
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.93 E-value=9.3e-06 Score=63.79 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=32.1
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++.+++.+ +..+.+.
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 445544 4455669999999999999999999999 6667663
No 432
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.93 E-value=1e-05 Score=62.75 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=33.7
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 455554 445556999999999999999999999988877763
No 433
>PLN02199 shikimate kinase
Probab=97.93 E-value=1.8e-05 Score=57.51 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=30.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
..+|+|+|.+||||||+++.+|..++.++ ++...++..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f---IDtD~lIe~ 139 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF---FDCDTLIEQ 139 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE---EehHHHHHH
Confidence 56799999999999999999999998775 444444444
No 434
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.93 E-value=9e-06 Score=58.55 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=29.1
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+++.+. +.++..+.|.||+|+|||||+++|++.+.+..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~ 61 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 344444 34455589999999999999999999986654
No 435
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.93 E-value=1.2e-05 Score=64.66 Aligned_cols=42 Identities=21% Similarity=0.405 Sum_probs=34.0
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 455544 445566999999999999999999999988877763
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.93 E-value=1.2e-05 Score=52.17 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++|+||+|+|||++++.+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987544
No 437
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.92 E-value=7.7e-06 Score=63.21 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+..+..+.|+||+|+|||||++++++.+.+..+.+.
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~ 62 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3444556899999999999999999999877767653
No 438
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.92 E-value=1.4e-05 Score=62.49 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
+++++.+ +++..++++|++|+||||+++++++.+.+..+.+..+
T Consensus 347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 4455444 4566699999999999999999999998877776433
No 439
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.91 E-value=1.1e-06 Score=61.83 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=43.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh--HHHHHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES--EANVRRLFADA 110 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~f~~a 110 (121)
+....-+.|.||+|+||||+..++.+.+.++.+.+...+..+....... ..-+.+.||..
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence 3444558899999999999999999999999999877777665543332 12244455543
No 440
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=9.2e-06 Score=58.53 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=29.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+..+..+.|.||+|+||||++++|++.+.+..+.+
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i 63 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE
Confidence 344555699999999999999999999987776665
No 441
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=1.2e-05 Score=57.66 Aligned_cols=35 Identities=17% Similarity=0.454 Sum_probs=27.6
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+++++. +.++..+.|.|++|+|||||+++|++.+.
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344443 44455689999999999999999999875
No 442
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=1.1e-05 Score=57.43 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||++++++.+.
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344555689999999999999999999875
No 443
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.91 E-value=1.4e-05 Score=62.52 Aligned_cols=42 Identities=19% Similarity=0.436 Sum_probs=33.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..++++|++|+||||+++.+++.+.+..+.+.
T Consensus 355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 445544 445666999999999999999999999988777653
No 444
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.91 E-value=1.2e-05 Score=64.45 Aligned_cols=43 Identities=12% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+++++. ++++..+.++|++|+||||+++.+++.+.+..+.+..
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 455544 4456669999999999999999999999888777643
No 445
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.91 E-value=1.3e-05 Score=62.80 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=33.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.++++. ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~ 373 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR 373 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence 455544 345556999999999999999999999988777663
No 446
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.90 E-value=2.1e-05 Score=62.46 Aligned_cols=45 Identities=33% Similarity=0.506 Sum_probs=32.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+..++.+ ...+ ....+..++|+|||||||||+|+++.+..
T Consensus 155 ~iiGqs~~~~~l-~~~i-------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 155 EIVGQERAIKAL-LAKV-------------ASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred hceeCcHHHHHH-HHHH-------------hcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 477777777765 2222 11234569999999999999999998776
No 447
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.90 E-value=1.1e-05 Score=63.42 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=32.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
+.++++..+++.||||||||++.|++|+......+.+..+
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P 453 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence 4456666799999999999999999999987766665433
No 448
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=1.2e-05 Score=56.94 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.+...+.|.||+|+|||||++++++.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 3445556889999999999999999998764
No 449
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=1.2e-05 Score=57.40 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=24.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+.++..+.|.||+|+|||||++++++..
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34455568999999999999999999975
No 450
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.90 E-value=1.9e-05 Score=53.21 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|+|.|++|+||||+++.++..+..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999854
No 451
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.90 E-value=1.2e-05 Score=63.16 Aligned_cols=41 Identities=20% Similarity=0.463 Sum_probs=33.1
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. ++++..++++|++|+||||+++.+++.+.+..+.+
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 455544 44555699999999999999999999998877665
No 452
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.90 E-value=1.1e-05 Score=61.09 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.....+.|.||+|+||||++|+|++.+.+..+.+.
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~ 61 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 344555889999999999999999999887767653
No 453
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.90 E-value=1.5e-05 Score=59.97 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=29.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG 88 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~ 88 (121)
.+..+.|.||+|+|||||+++|++.+.+..+.+...
T Consensus 49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id 84 (382)
T TIGR03415 49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK 84 (382)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 344488999999999999999999998877776433
No 454
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.89 E-value=1e-05 Score=57.11 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=27.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHH--hcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQM--LNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~--~~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||+++|++. +.+..+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i 66 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI 66 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence 3455566899999999999999999996 33444443
No 455
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.89 E-value=9e-06 Score=62.94 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++.+ ..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i 62 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence 3444443 4445588999999999999999999987766665
No 456
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=1.3e-05 Score=56.64 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+||||+++++++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 344555689999999999999999999875
No 457
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.88 E-value=1.1e-05 Score=57.16 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=25.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 344556699999999999999999999875
No 458
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=1.1e-05 Score=57.41 Aligned_cols=40 Identities=13% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.+++++.+ .++..+.+.||+|+||||++++|++...+..+
T Consensus 24 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 34445443 44556999999999999999999998766543
No 459
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=1e-05 Score=55.04 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc--CCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN--AREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~--~~~~~~ 85 (121)
.+.+...+.|.||+|+||||+++++++... +..+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i 66 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence 344556689999999999999999998642 344554
No 460
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.88 E-value=1.5e-05 Score=58.33 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=25.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
...|++|+||+|+|||.|+.++|+++..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~ 182 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAK 182 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999853
No 461
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.88 E-value=1.2e-05 Score=57.19 Aligned_cols=32 Identities=25% Similarity=0.579 Sum_probs=26.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.++..+.|.||+|+|||||+++|++.+.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 34455669999999999999999999988643
No 462
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.88 E-value=9.7e-06 Score=62.45 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~ 61 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence 3445566999999999999999999999877667653
No 463
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=9.8e-06 Score=64.50 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.++..+.|+||+|||||||+++|++.+.+..+.+.
T Consensus 16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~ 59 (638)
T PRK10636 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT 59 (638)
T ss_pred eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 444443 444556999999999999999999999877777653
No 464
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.88 E-value=1.3e-05 Score=62.60 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.++++. ++++..+.+.||+|+||||+++.+++.+.+..+.+.
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 444444 445556999999999999999999999988877763
No 465
>PRK08116 hypothetical protein; Validated
Probab=97.88 E-value=1.3e-05 Score=57.50 Aligned_cols=26 Identities=46% Similarity=0.652 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+++|+|++|+|||.|+.++++.+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999874
No 466
>PRK04182 cytidylate kinase; Provisional
Probab=97.88 E-value=1.3e-05 Score=53.36 Aligned_cols=26 Identities=42% Similarity=0.788 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
|++.|++||||||+++.+|..++.++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~ 28 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKH 28 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 78999999999999999999998764
No 467
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.88 E-value=1e-05 Score=62.65 Aligned_cols=42 Identities=14% Similarity=0.077 Sum_probs=31.9
Q ss_pred HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+.. +..+.|.||+|||||||++++++.+.+..+.+.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 445544443 445889999999999999999999877666653
No 468
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.88 E-value=7.9e-06 Score=53.46 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632 59 LYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY 95 (121)
Q Consensus 59 l~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 95 (121)
+.||||+||||+|+.||..++.. .++.++++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~---~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV---HISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE---EEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc---eechHHHHHHH
Confidence 68999999999999999999754 24455555443
No 469
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=3e-05 Score=60.51 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=35.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ ...+.. + ..+..++|+||+|+|||++|+++|+.+.
T Consensus 15 eiiGqe~v~~~L-~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~ 61 (535)
T PRK08451 15 ELIGQESVSKTL-SLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALV 61 (535)
T ss_pred HccCcHHHHHHH-HHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence 699999887776 433321 1 2345579999999999999999999873
No 470
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=1.3e-05 Score=57.38 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=25.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.+...+.|.||+|+|||||+++|++...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344555688999999999999999999865
No 471
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=1.4e-05 Score=56.41 Aligned_cols=36 Identities=33% Similarity=0.460 Sum_probs=28.0
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+++++. +.++..+.|.||+|+||||+++++++.+.+
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 344443 445566889999999999999999998754
No 472
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.4e-05 Score=56.28 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.+...+.|+||+|+|||||++++++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMND 53 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345556699999999999999999999864
No 473
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.86 E-value=1.5e-05 Score=62.13 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=32.7
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.++++. ++++..+.++||+||||||+++++++.+.+..+.+
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 444544 44556699999999999999999999998776765
No 474
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.6e-05 Score=56.13 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||++++++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 344555688999999999999999999865
No 475
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.86 E-value=1.1e-05 Score=55.53 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=25.5
Q ss_pred HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+.++..+.++|+||+|+||||++|.++...
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34455555678999999999999999999654
No 476
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.5e-05 Score=56.93 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=27.5
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+++++. +.++..+.|.||+|+|||||+++|++.+.
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 344433 44455699999999999999999999875
No 477
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.7e-05 Score=55.90 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=26.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.++..+.|.||+|+||||+++++++...+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 3445566899999999999999999998764
No 478
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.86 E-value=1.2e-05 Score=56.56 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=28.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~ 85 (121)
.+.++..+.|.||+|+|||||++++++.. .+..+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i 60 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE
Confidence 34455568999999999999999999984 3444554
No 479
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.86 E-value=1.5e-05 Score=62.19 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=38.6
Q ss_pred HHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632 45 VVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE 98 (121)
Q Consensus 45 ~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~ 98 (121)
+++.+ .+..+..|.++||+|+|||||++.|++.++...+.+..+..+...|+..
T Consensus 337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q 392 (530)
T COG0488 337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ 392 (530)
T ss_pred eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence 44443 4455666999999999999999999999887777665455444444433
No 480
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.86 E-value=1.1e-05 Score=54.51 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=21.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
.+.++.-+.+.||+|||||||++++..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 344455688999999999999999863
No 481
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.86 E-value=5.2e-05 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|+|+|+||+||||+|+.++..+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998853
No 482
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.86 E-value=4.6e-05 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy3632 57 ILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+.|+|++|||||.+++.||+.+
T Consensus 56 lSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EEeecCCCCcHHHHHHHHHHHH
Confidence 5589999999999999999985
No 483
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.86 E-value=2.8e-05 Score=52.62 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=30.8
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+..+.++.|+||+|+||||+.|.+-.-+.++.+.+
T Consensus 32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I 68 (235)
T COG4778 32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI 68 (235)
T ss_pred EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence 3445567899999999999999999998887776665
No 484
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.1e-05 Score=62.75 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=31.6
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +..+..+.|+||+|||||||++++++.+.+..+.+
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i 58 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV 58 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 444443 44455699999999999999999999887666664
No 485
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.85 E-value=2.5e-05 Score=57.68 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+++|+||+|+|||+|+.++|.++-.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 368999999999999999999998743
No 486
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.5e-05 Score=56.23 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||+++|++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344566689999999999999999999754
No 487
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.85 E-value=1.9e-05 Score=61.81 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=35.5
Q ss_pred HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.+++++. ++++..+.++||+||||||+++.+++.+.+..+.+..++
T Consensus 343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg 390 (567)
T COG1132 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG 390 (567)
T ss_pred ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence 3445443 455666999999999999999999999998777764433
No 488
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.5e-05 Score=56.84 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.++..+.+.||+|+|||||++++++.+.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence 4455667999999999999999999998754
No 489
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.85 E-value=1.2e-05 Score=57.09 Aligned_cols=30 Identities=20% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 344555699999999999999999999875
No 490
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=1.6e-05 Score=50.29 Aligned_cols=26 Identities=35% Similarity=0.781 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++++||+|+|||++++.++..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 34688999999999999999999874
No 491
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.85 E-value=1.2e-05 Score=63.05 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +..+..+.|.||+|||||||+++|++.+.+..+.+
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i 64 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA 64 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 444444 44455699999999999999999999987766654
No 492
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=1.8e-05 Score=55.93 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=24.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.++..+.|.||+|+|||||++++++...
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44555688999999999999999999864
No 493
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.84 E-value=1e-05 Score=64.35 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=32.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.++..+.|+||+|||||||+++|++...+..+.+.
T Consensus 18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~ 61 (635)
T PRK11147 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61 (635)
T ss_pred eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 444444 444556999999999999999999999877766653
No 494
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.84 E-value=2.3e-05 Score=50.80 Aligned_cols=24 Identities=42% Similarity=0.786 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++++||||+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998754
No 495
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.84 E-value=1.7e-05 Score=56.81 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++..+.+.||+|+||||+++++++.+.
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445566689999999999999999999865
No 496
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.84 E-value=1.2e-05 Score=62.25 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+ ..+..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~ 69 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3444443 44445889999999999999999999877667653
No 497
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.84 E-value=2e-05 Score=62.60 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+++++.+.. +..+.|.||+|||||||+++|++.+.+..+.+..
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~ 383 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF 383 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence 344544443 4448899999999999999999998777677643
No 498
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.84 E-value=3e-05 Score=60.13 Aligned_cols=29 Identities=38% Similarity=0.784 Sum_probs=24.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
...+++|.||||||||++++++++.+...
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~ 238 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPL 238 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence 34579999999999999999999877553
No 499
>KOG0060|consensus
Probab=97.84 E-value=1.6e-05 Score=62.00 Aligned_cols=35 Identities=29% Similarity=0.531 Sum_probs=28.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
++...++|++||+|||||+|.|++|+......+.+
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l 492 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL 492 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence 34455699999999999999999999887555554
No 500
>KOG0058|consensus
Probab=97.84 E-value=2.8e-05 Score=61.86 Aligned_cols=59 Identities=22% Similarity=0.349 Sum_probs=44.2
Q ss_pred hhccCCC-hHHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632 36 FASRVFP-PEVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94 (121)
Q Consensus 36 i~~~~~~-~~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~ 94 (121)
+.+|-++ ..+++++. ++|+..+.|+||+|+||||++..+-+.+.+..+.+..++..++.
T Consensus 473 FaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 473 FAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred eecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 4455552 34777755 55566799999999999999999999999998888555544433
Done!