Query psy3632
Match_columns 121
No_of_seqs 185 out of 1102
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 21:41:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.9 3E-27 1E-31 175.3 8.2 104 10-117 141-244 (405)
2 4b4t_I 26S protease regulatory 99.9 2.5E-26 8.4E-31 171.2 8.1 104 10-117 175-278 (437)
3 4b4t_M 26S protease regulatory 99.9 5E-26 1.7E-30 170.3 8.2 104 10-117 174-277 (434)
4 4b4t_L 26S protease subunit RP 99.9 4.9E-26 1.7E-30 170.5 8.0 104 10-117 174-277 (437)
5 4b4t_K 26S protease regulatory 99.9 6.1E-26 2.1E-30 169.7 8.3 104 10-117 165-268 (428)
6 4b4t_H 26S protease regulatory 99.9 4.9E-26 1.7E-30 170.9 7.8 104 10-117 202-305 (467)
7 3cf2_A TER ATPase, transitiona 99.9 3.5E-23 1.2E-27 164.2 2.0 103 11-117 198-300 (806)
8 3cf2_A TER ATPase, transitiona 99.8 4.9E-22 1.7E-26 157.7 3.9 103 11-117 471-573 (806)
9 2x8a_A Nuclear valosin-contain 99.8 9.6E-21 3.3E-25 134.4 6.2 104 10-117 3-106 (274)
10 3cf0_A Transitional endoplasmi 99.8 2.7E-19 9.1E-24 128.2 5.4 102 10-115 8-109 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.9E-18 6.4E-23 125.0 6.0 101 10-115 5-106 (322)
12 3h4m_A Proteasome-activating n 99.7 9.4E-18 3.2E-22 118.5 7.5 102 10-115 10-111 (285)
13 3eie_A Vacuolar protein sortin 99.7 4.5E-18 1.5E-22 122.8 5.6 101 10-115 11-111 (322)
14 2qz4_A Paraplegin; AAA+, SPG7, 99.7 7.7E-17 2.6E-21 112.3 7.2 97 13-114 2-98 (262)
15 2qp9_X Vacuolar protein sortin 99.7 1.9E-17 6.6E-22 121.1 4.2 100 11-115 45-144 (355)
16 1lv7_A FTSH; alpha/beta domain 99.7 5.3E-17 1.8E-21 113.4 5.9 99 12-115 7-105 (257)
17 2ce7_A Cell division protein F 99.7 1.5E-16 5E-21 120.5 8.3 99 12-115 11-109 (476)
18 3hu3_A Transitional endoplasmi 99.7 1.1E-16 3.9E-21 121.5 6.3 94 20-115 205-298 (489)
19 2zan_A Vacuolar protein sortin 99.6 5.1E-17 1.8E-21 122.0 3.7 101 10-115 127-228 (444)
20 1ypw_A Transitional endoplasmi 99.6 9.3E-17 3.2E-21 128.0 3.3 100 13-116 200-299 (806)
21 1ypw_A Transitional endoplasmi 99.6 2E-16 6.8E-21 126.1 4.7 102 12-117 472-573 (806)
22 3b9p_A CG5977-PA, isoform A; A 99.6 4.6E-16 1.6E-20 110.5 6.0 99 12-115 16-114 (297)
23 1ixz_A ATP-dependent metallopr 99.6 8.8E-16 3E-20 107.0 6.2 98 11-113 10-107 (254)
24 2dhr_A FTSH; AAA+ protein, hex 99.6 3.7E-16 1.3E-20 118.9 3.9 99 12-115 26-124 (499)
25 3d8b_A Fidgetin-like protein 1 99.6 1.2E-15 4.1E-20 111.6 5.9 98 12-114 79-176 (357)
26 2r62_A Cell division protease 99.6 1.8E-16 6.3E-21 111.1 1.4 99 11-114 5-103 (268)
27 1iy2_A ATP-dependent metallopr 99.6 3.5E-15 1.2E-19 105.4 7.2 98 12-114 35-132 (278)
28 3vfd_A Spastin; ATPase, microt 99.6 2.3E-15 7.9E-20 111.0 6.4 98 13-115 111-208 (389)
29 1g41_A Heat shock protein HSLU 99.5 9.8E-14 3.3E-18 104.2 6.8 94 20-115 16-112 (444)
30 2c9o_A RUVB-like 1; hexameric 99.4 2.3E-13 7.9E-18 102.3 7.9 87 11-110 31-119 (456)
31 3t15_A Ribulose bisphosphate c 99.4 2E-13 6.9E-18 97.4 5.4 64 49-113 31-94 (293)
32 3syl_A Protein CBBX; photosynt 99.3 1.8E-12 6.1E-17 92.2 7.0 88 20-110 32-129 (309)
33 1d2n_A N-ethylmaleimide-sensit 99.1 1.3E-10 4.4E-15 81.5 7.3 89 20-112 34-122 (272)
34 3hws_A ATP-dependent CLP prote 99.1 4.4E-11 1.5E-15 87.3 4.7 89 20-110 16-108 (363)
35 1ofh_A ATP-dependent HSL prote 99.0 4.3E-10 1.5E-14 79.5 4.3 88 20-109 16-106 (310)
36 3uk6_A RUVB-like 2; hexameric 98.9 4.1E-09 1.4E-13 76.4 8.6 60 11-81 38-97 (368)
37 1um8_A ATP-dependent CLP prote 98.9 2.2E-09 7.6E-14 78.5 6.5 87 20-109 22-128 (376)
38 1jbk_A CLPB protein; beta barr 98.9 5.9E-09 2E-13 68.2 7.9 79 20-112 23-112 (195)
39 3m6a_A ATP-dependent protease 98.9 7.5E-10 2.6E-14 85.0 3.5 82 20-111 82-173 (543)
40 3cmw_A Protein RECA, recombina 98.9 7.9E-10 2.7E-14 93.5 3.0 100 14-116 1017-1162(1706)
41 2p65_A Hypothetical protein PF 98.8 1E-08 3.4E-13 67.0 7.0 80 20-113 23-113 (187)
42 3pxg_A Negative regulator of g 98.8 2.5E-09 8.5E-14 80.7 3.9 76 20-113 181-266 (468)
43 1sxj_A Activator 1 95 kDa subu 98.8 3.4E-09 1.2E-13 80.7 4.6 72 20-93 40-115 (516)
44 3pxi_A Negative regulator of g 98.8 3.6E-09 1.2E-13 83.8 3.9 76 20-113 181-266 (758)
45 3ec2_A DNA replication protein 98.7 4.6E-08 1.6E-12 64.4 6.6 33 47-79 31-63 (180)
46 3co5_A Putative two-component 98.7 5.2E-09 1.8E-13 67.0 1.8 57 20-90 5-61 (143)
47 3pvs_A Replication-associated 98.7 6.1E-08 2.1E-12 72.9 7.6 73 20-114 27-102 (447)
48 3vaa_A Shikimate kinase, SK; s 98.7 2.6E-08 8.8E-13 66.8 5.0 32 51-82 22-53 (199)
49 3pfi_A Holliday junction ATP-d 98.7 5.6E-08 1.9E-12 69.8 6.8 56 20-84 30-85 (338)
50 1qvr_A CLPB protein; coiled co 98.6 5E-08 1.7E-12 78.3 7.0 79 20-113 171-261 (854)
51 3n70_A Transport activator; si 98.6 4.7E-08 1.6E-12 62.6 5.5 47 20-78 2-48 (145)
52 1r6b_X CLPA protein; AAA+, N-t 98.6 1.7E-07 5.6E-12 74.2 7.8 79 20-112 187-276 (758)
53 1l8q_A Chromosomal replication 98.6 2E-07 6.8E-12 66.7 7.4 26 53-78 36-61 (324)
54 1hqc_A RUVB; extended AAA-ATPa 98.5 1.6E-07 5.5E-12 66.8 6.2 55 20-83 13-67 (324)
55 3trf_A Shikimate kinase, SK; a 98.5 1.2E-07 4.1E-12 62.5 4.8 39 54-95 5-43 (185)
56 2r44_A Uncharacterized protein 98.5 6.5E-08 2.2E-12 69.4 3.2 31 54-84 46-76 (331)
57 3te6_A Regulatory protein SIR3 98.5 1.5E-07 5.2E-12 67.9 4.9 29 51-79 42-70 (318)
58 1g8p_A Magnesium-chelatase 38 98.5 1.7E-07 5.7E-12 67.3 4.9 54 10-79 17-70 (350)
59 3u61_B DNA polymerase accessor 98.5 5.8E-07 2E-11 64.2 7.6 52 20-84 27-78 (324)
60 2chg_A Replication factor C sm 98.4 5.3E-07 1.8E-11 60.0 6.7 45 20-78 18-62 (226)
61 3tif_A Uncharacterized ABC tra 98.4 1.1E-07 3.7E-12 65.8 3.1 39 51-89 28-66 (235)
62 1kag_A SKI, shikimate kinase I 98.4 3.8E-07 1.3E-11 59.3 5.4 27 55-81 5-31 (173)
63 1htw_A HI0065; nucleotide-bind 98.4 3.7E-07 1.3E-11 59.6 5.1 36 49-85 28-63 (158)
64 1in4_A RUVB, holliday junction 98.4 2.8E-07 9.5E-12 66.6 4.2 53 20-81 26-78 (334)
65 4fcw_A Chaperone protein CLPB; 98.4 5.8E-07 2E-11 63.5 5.7 55 20-81 18-74 (311)
66 1njg_A DNA polymerase III subu 98.4 1.1E-06 3.6E-11 59.1 6.7 49 20-81 24-72 (250)
67 1sxj_D Activator 1 41 kDa subu 98.4 5.6E-07 1.9E-11 64.5 5.4 46 20-79 38-83 (353)
68 2bjv_A PSP operon transcriptio 98.3 5.2E-07 1.8E-11 62.7 5.0 48 20-79 7-54 (265)
69 3bos_A Putative DNA replicatio 98.3 1.5E-06 5.2E-11 58.8 7.1 28 53-80 51-78 (242)
70 2v1u_A Cell division control p 98.3 6.8E-07 2.3E-11 64.5 5.7 49 20-78 20-68 (387)
71 1zp6_A Hypothetical protein AT 98.3 2.5E-07 8.5E-12 61.2 2.9 30 51-80 6-35 (191)
72 4g1u_C Hemin import ATP-bindin 98.3 2.6E-07 9E-12 65.0 3.0 39 51-89 34-72 (266)
73 1fnn_A CDC6P, cell division co 98.3 1.8E-06 6.2E-11 62.5 7.5 60 10-81 10-71 (389)
74 2rhm_A Putative kinase; P-loop 98.3 4.1E-07 1.4E-11 60.1 3.7 30 52-81 3-32 (193)
75 3k1j_A LON protease, ATP-depen 98.3 4.7E-07 1.6E-11 70.2 4.5 47 20-82 42-88 (604)
76 3pxi_A Negative regulator of g 98.3 6.5E-07 2.2E-11 70.9 5.3 66 20-95 492-564 (758)
77 1qhx_A CPT, protein (chloramph 98.3 4.1E-07 1.4E-11 59.4 3.5 29 55-83 4-32 (178)
78 1iqp_A RFCS; clamp loader, ext 98.3 1.5E-06 5.3E-11 61.5 6.7 46 20-79 26-71 (327)
79 1tue_A Replication protein E1; 98.3 3.6E-07 1.2E-11 62.3 3.3 30 51-80 55-84 (212)
80 1sxj_C Activator 1 40 kDa subu 98.3 1.6E-06 5.4E-11 62.5 6.8 47 20-80 26-72 (340)
81 2pcj_A ABC transporter, lipopr 98.3 2.4E-07 8.4E-12 63.6 2.3 36 51-86 27-62 (224)
82 3nwj_A ATSK2; P loop, shikimat 98.3 3.6E-07 1.2E-11 63.9 3.2 29 54-82 48-76 (250)
83 2w58_A DNAI, primosome compone 98.3 6.9E-07 2.4E-11 59.6 4.3 27 55-81 55-81 (202)
84 2qby_B CDC6 homolog 3, cell di 98.3 1.3E-06 4.5E-11 63.3 6.0 49 20-78 21-69 (384)
85 2z4s_A Chromosomal replication 98.3 1.7E-06 5.7E-11 64.8 6.5 25 54-78 130-154 (440)
86 3kb2_A SPBC2 prophage-derived 98.3 5E-07 1.7E-11 58.5 3.3 27 56-82 3-29 (173)
87 1r6b_X CLPA protein; AAA+, N-t 98.3 1.4E-06 4.7E-11 69.0 6.2 37 54-91 488-524 (758)
88 3tui_C Methionine import ATP-b 98.3 4.8E-07 1.6E-11 66.5 3.3 44 46-89 44-89 (366)
89 2qby_A CDC6 homolog 1, cell di 98.3 1.9E-06 6.4E-11 62.1 6.3 49 20-78 21-69 (386)
90 1gvn_B Zeta; postsegregational 98.2 1.5E-06 5.1E-11 61.7 5.6 27 54-80 33-59 (287)
91 1mv5_A LMRA, multidrug resista 98.2 4.1E-07 1.4E-11 63.1 2.6 35 51-85 25-59 (243)
92 1jr3_A DNA polymerase III subu 98.2 2.6E-06 9E-11 61.5 6.9 48 20-80 17-64 (373)
93 3rlf_A Maltose/maltodextrin im 98.2 4.4E-07 1.5E-11 67.0 2.7 35 52-86 27-61 (381)
94 3fvq_A Fe(3+) IONS import ATP- 98.2 3.4E-07 1.2E-11 67.1 2.1 35 52-86 28-62 (359)
95 2chq_A Replication factor C sm 98.2 2.4E-06 8.1E-11 60.3 6.3 45 20-78 18-62 (319)
96 3uie_A Adenylyl-sulfate kinase 98.2 2.1E-06 7.1E-11 57.4 5.7 28 52-79 23-50 (200)
97 2eyu_A Twitching motility prot 98.2 9.4E-07 3.2E-11 62.0 4.1 41 45-85 16-57 (261)
98 1sxj_E Activator 1 40 kDa subu 98.2 1.5E-06 5.3E-11 62.5 5.3 46 20-78 15-60 (354)
99 1b0u_A Histidine permease; ABC 98.2 3.6E-07 1.2E-11 64.2 1.9 36 51-86 29-64 (262)
100 1ojl_A Transcriptional regulat 98.2 2.9E-06 9.9E-11 60.6 6.6 59 20-91 3-64 (304)
101 1g6h_A High-affinity branched- 98.2 3.6E-07 1.2E-11 64.0 1.8 42 45-86 22-65 (257)
102 2onk_A Molybdate/tungstate ABC 98.2 4.9E-07 1.7E-11 62.7 2.5 36 49-85 20-55 (240)
103 3nbx_X ATPase RAVA; AAA+ ATPas 98.2 5.5E-07 1.9E-11 68.6 2.8 27 54-80 41-67 (500)
104 3gfo_A Cobalt import ATP-bindi 98.2 3.5E-07 1.2E-11 64.7 1.6 41 46-86 24-66 (275)
105 2ixe_A Antigen peptide transpo 98.2 4.7E-07 1.6E-11 63.9 2.1 42 45-86 34-77 (271)
106 1zuh_A Shikimate kinase; alpha 98.2 8.9E-07 3.1E-11 57.5 3.3 28 55-82 8-35 (168)
107 2ff7_A Alpha-hemolysin translo 98.2 5.2E-07 1.8E-11 62.8 2.3 36 51-86 32-67 (247)
108 1ji0_A ABC transporter; ATP bi 98.2 3.9E-07 1.3E-11 63.2 1.6 35 51-85 29-63 (240)
109 1via_A Shikimate kinase; struc 98.2 7.2E-07 2.5E-11 58.4 2.8 27 56-82 6-32 (175)
110 3tr0_A Guanylate kinase, GMP k 98.2 1.1E-06 3.8E-11 58.5 3.8 27 53-79 6-32 (205)
111 2olj_A Amino acid ABC transpor 98.2 4.4E-07 1.5E-11 63.9 1.9 41 45-85 39-81 (263)
112 4eun_A Thermoresistant glucoki 98.2 1.2E-06 4.3E-11 58.6 4.0 28 53-80 28-55 (200)
113 2yyz_A Sugar ABC transporter, 98.2 5.8E-07 2E-11 65.9 2.4 35 51-85 26-60 (359)
114 2it1_A 362AA long hypothetical 98.2 6.1E-07 2.1E-11 65.8 2.5 35 51-85 26-60 (362)
115 2qi9_C Vitamin B12 import ATP- 98.2 6.2E-07 2.1E-11 62.6 2.4 36 51-87 23-58 (249)
116 1sgw_A Putative ABC transporte 98.2 4.9E-07 1.7E-11 61.8 1.8 35 51-85 32-66 (214)
117 3c8u_A Fructokinase; YP_612366 98.2 2.6E-06 8.7E-11 57.4 5.4 29 52-80 20-48 (208)
118 3iij_A Coilin-interacting nucl 98.2 1E-06 3.5E-11 57.8 3.3 29 54-82 11-39 (180)
119 1ye8_A Protein THEP1, hypothet 98.2 1.2E-06 4.1E-11 58.1 3.6 24 56-79 2-25 (178)
120 1v43_A Sugar-binding transport 98.2 6.5E-07 2.2E-11 65.9 2.5 36 51-86 34-69 (372)
121 1sxj_B Activator 1 37 kDa subu 98.2 4.4E-06 1.5E-10 59.0 6.7 45 20-78 22-66 (323)
122 1z47_A CYSA, putative ABC-tran 98.2 5.6E-07 1.9E-11 65.9 2.1 35 51-85 38-72 (355)
123 2p5t_B PEZT; postsegregational 98.2 2E-06 6.9E-11 59.7 4.8 30 52-81 30-59 (253)
124 3b9q_A Chloroplast SRP recepto 98.2 1.7E-06 5.8E-11 62.0 4.5 34 52-85 98-131 (302)
125 1vpl_A ABC transporter, ATP-bi 98.2 5.7E-07 1.9E-11 63.0 1.9 35 51-85 38-72 (256)
126 2j41_A Guanylate kinase; GMP, 98.2 1.2E-06 4.2E-11 58.3 3.4 27 52-78 4-30 (207)
127 4a74_A DNA repair and recombin 98.2 2E-06 6.8E-11 58.1 4.5 31 50-80 21-51 (231)
128 1y63_A LMAJ004144AAA protein; 98.2 1.1E-06 3.6E-11 58.2 3.0 28 54-81 10-38 (184)
129 1z6g_A Guanylate kinase; struc 98.2 1.3E-06 4.5E-11 59.5 3.6 28 51-78 20-47 (218)
130 2pze_A Cystic fibrosis transme 98.2 5.3E-07 1.8E-11 62.1 1.6 35 51-85 31-65 (229)
131 2ihy_A ABC transporter, ATP-bi 98.2 5.6E-07 1.9E-11 63.8 1.7 42 45-86 36-79 (279)
132 3d31_A Sulfate/molybdate ABC t 98.2 5.5E-07 1.9E-11 65.8 1.7 36 51-86 23-58 (348)
133 1g29_1 MALK, maltose transport 98.1 6.5E-07 2.2E-11 65.9 2.0 35 51-85 26-60 (372)
134 1u0j_A DNA replication protein 98.1 1.6E-06 5.5E-11 61.2 4.0 25 54-78 104-128 (267)
135 2iyv_A Shikimate kinase, SK; t 98.1 1.4E-06 4.8E-11 57.3 3.5 27 56-82 4-30 (184)
136 2cbz_A Multidrug resistance-as 98.1 4.1E-07 1.4E-11 63.0 0.8 36 50-85 27-62 (237)
137 3t61_A Gluconokinase; PSI-biol 98.1 1.4E-06 4.9E-11 58.2 3.5 28 54-81 18-45 (202)
138 3nh6_A ATP-binding cassette SU 98.1 5.9E-07 2E-11 64.5 1.6 35 52-86 78-112 (306)
139 2bwj_A Adenylate kinase 5; pho 98.1 3E-06 1E-10 56.1 5.0 28 54-81 12-39 (199)
140 2yz2_A Putative ABC transporte 98.1 6.6E-07 2.2E-11 62.9 1.8 35 51-85 30-64 (266)
141 3cm0_A Adenylate kinase; ATP-b 98.1 1.1E-06 3.8E-11 57.8 2.7 27 55-81 5-31 (186)
142 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 6E-11 58.2 3.5 30 50-79 16-45 (207)
143 2kjq_A DNAA-related protein; s 98.1 1.2E-06 4.2E-11 56.4 2.6 28 53-80 35-62 (149)
144 1lvg_A Guanylate kinase, GMP k 98.1 1.9E-06 6.3E-11 57.9 3.6 27 53-79 3-29 (198)
145 1knq_A Gluconate kinase; ALFA/ 98.1 2.2E-06 7.5E-11 55.9 3.9 28 54-81 8-35 (175)
146 2qgz_A Helicase loader, putati 98.1 3.1E-06 1.1E-10 60.6 4.9 26 54-79 152-177 (308)
147 2cdn_A Adenylate kinase; phosp 98.1 2.2E-06 7.4E-11 57.3 3.8 28 54-81 20-47 (201)
148 2og2_A Putative signal recogni 98.1 2.4E-06 8.2E-11 62.6 4.3 34 52-85 155-188 (359)
149 1oxx_K GLCV, glucose, ABC tran 98.1 5.4E-07 1.8E-11 65.9 0.8 35 51-85 28-62 (353)
150 1jjv_A Dephospho-COA kinase; P 98.1 1.4E-06 5E-11 58.3 2.8 25 56-81 4-28 (206)
151 2if2_A Dephospho-COA kinase; a 98.1 2.4E-06 8.1E-11 57.1 3.8 25 56-81 3-27 (204)
152 2ze6_A Isopentenyl transferase 98.1 1.9E-06 6.5E-11 60.0 3.4 26 56-81 3-28 (253)
153 2nq2_C Hypothetical ABC transp 98.1 7.3E-07 2.5E-11 62.3 1.2 34 51-84 28-61 (253)
154 1kgd_A CASK, peripheral plasma 98.1 2.5E-06 8.4E-11 56.3 3.7 26 54-79 5-30 (180)
155 2bbw_A Adenylate kinase 4, AK4 98.1 2.7E-06 9.1E-11 58.7 4.0 28 54-81 27-54 (246)
156 1cke_A CK, MSSA, protein (cyti 98.1 1.6E-06 5.4E-11 58.7 2.8 27 55-81 6-32 (227)
157 2c95_A Adenylate kinase 1; tra 98.1 1.5E-06 5.2E-11 57.4 2.7 28 54-81 9-36 (196)
158 2v9p_A Replication protein E1; 98.1 2.8E-06 9.5E-11 61.0 4.2 35 44-78 114-150 (305)
159 2ehv_A Hypothetical protein PH 98.1 1.4E-06 4.8E-11 59.6 2.5 26 50-75 26-51 (251)
160 1svm_A Large T antigen; AAA+ f 98.1 2.9E-06 1E-10 62.5 4.3 33 49-81 164-196 (377)
161 1tev_A UMP-CMP kinase; ploop, 98.1 1.8E-06 6.3E-11 56.8 3.0 27 55-81 4-30 (196)
162 1kht_A Adenylate kinase; phosp 98.1 2.2E-06 7.5E-11 56.3 3.3 25 55-79 4-28 (192)
163 2jeo_A Uridine-cytidine kinase 98.1 2.7E-06 9.3E-11 58.7 3.9 35 46-80 15-51 (245)
164 1aky_A Adenylate kinase; ATP:A 98.1 2E-06 6.9E-11 58.2 3.1 28 54-81 4-31 (220)
165 1zak_A Adenylate kinase; ATP:A 98.1 2.1E-06 7.3E-11 58.2 3.3 28 54-81 5-32 (222)
166 3fb4_A Adenylate kinase; psych 98.1 2.2E-06 7.6E-11 57.7 3.3 25 57-81 3-27 (216)
167 3a00_A Guanylate kinase, GMP k 98.1 2.5E-06 8.4E-11 56.5 3.4 24 56-79 3-26 (186)
168 1e6c_A Shikimate kinase; phosp 98.1 1.9E-06 6.6E-11 55.9 2.8 26 56-81 4-29 (173)
169 1ly1_A Polynucleotide kinase; 98.1 2.3E-06 7.9E-11 55.7 3.2 22 55-76 3-24 (181)
170 3gd7_A Fusion complex of cysti 98.1 1.3E-06 4.5E-11 64.7 2.2 41 45-86 36-78 (390)
171 3dl0_A Adenylate kinase; phosp 98.1 2.1E-06 7.3E-11 57.8 3.1 26 56-81 2-27 (216)
172 3umf_A Adenylate kinase; rossm 98.1 2.4E-06 8.1E-11 58.6 3.3 39 52-93 27-65 (217)
173 3lw7_A Adenylate kinase relate 98.1 1.9E-06 6.4E-11 55.5 2.6 25 56-81 3-27 (179)
174 3asz_A Uridine kinase; cytidin 98.1 2.8E-06 9.6E-11 57.0 3.5 26 54-79 6-31 (211)
175 1nks_A Adenylate kinase; therm 98.1 2.4E-06 8.1E-11 56.2 3.1 25 56-80 3-27 (194)
176 2d2e_A SUFC protein; ABC-ATPas 98.0 9.4E-07 3.2E-11 61.6 1.1 35 51-85 26-62 (250)
177 2grj_A Dephospho-COA kinase; T 98.0 2.9E-06 1E-10 57.0 3.5 26 56-81 14-39 (192)
178 2pbr_A DTMP kinase, thymidylat 98.0 5.1E-06 1.7E-10 54.6 4.6 22 57-78 3-24 (195)
179 2vhj_A Ntpase P4, P4; non- hyd 98.0 7.7E-06 2.6E-10 59.2 5.8 32 50-81 119-150 (331)
180 1qf9_A UMP/CMP kinase, protein 98.0 2.6E-06 9E-11 55.9 3.1 28 54-81 6-33 (194)
181 2pt5_A Shikimate kinase, SK; a 98.0 3.1E-06 1.1E-10 54.7 3.4 26 56-81 2-27 (168)
182 2ghi_A Transport protein; mult 98.0 1.6E-06 5.5E-11 60.8 2.0 40 45-85 35-76 (260)
183 1zd8_A GTP:AMP phosphotransfer 98.0 2.2E-06 7.4E-11 58.4 2.6 28 54-81 7-34 (227)
184 2vli_A Antibiotic resistance p 98.0 1.7E-06 5.9E-11 56.6 2.0 28 55-82 6-33 (183)
185 3sr0_A Adenylate kinase; phosp 98.0 2.4E-06 8.3E-11 58.0 2.8 34 57-93 3-36 (206)
186 2zu0_C Probable ATP-dependent 98.0 1.5E-06 5E-11 61.2 1.7 34 45-78 35-70 (267)
187 1qvr_A CLPB protein; coiled co 98.0 6E-06 2.1E-10 66.3 5.4 36 55-91 589-627 (854)
188 2pjz_A Hypothetical protein ST 98.0 1.8E-06 6.2E-11 60.7 2.1 35 50-86 27-61 (263)
189 2ewv_A Twitching motility prot 98.0 2.9E-06 1E-10 62.3 3.2 41 45-85 127-168 (372)
190 3tlx_A Adenylate kinase 2; str 98.0 3.3E-06 1.1E-10 58.4 3.3 29 53-81 28-56 (243)
191 3tau_A Guanylate kinase, GMP k 98.0 4E-06 1.4E-10 56.5 3.6 27 54-80 8-34 (208)
192 3e70_C DPA, signal recognition 98.0 1.3E-05 4.4E-10 58.0 6.5 34 52-85 127-160 (328)
193 2wwf_A Thymidilate kinase, put 98.0 4.1E-06 1.4E-10 56.0 3.6 30 54-83 10-39 (212)
194 4gp7_A Metallophosphoesterase; 98.0 3.7E-06 1.3E-10 55.1 3.3 23 51-73 6-28 (171)
195 3be4_A Adenylate kinase; malar 98.0 2.9E-06 1E-10 57.4 2.9 27 55-81 6-32 (217)
196 2qor_A Guanylate kinase; phosp 98.0 4.6E-06 1.6E-10 55.9 3.8 28 52-79 10-37 (204)
197 2bdt_A BH3686; alpha-beta prot 98.0 3.8E-06 1.3E-10 55.4 3.3 23 56-78 4-26 (189)
198 2jaq_A Deoxyguanosine kinase; 98.0 4.4E-06 1.5E-10 55.4 3.6 26 56-81 2-27 (205)
199 2plr_A DTMP kinase, probable t 98.0 4.8E-06 1.6E-10 55.5 3.7 27 55-81 5-31 (213)
200 2bbs_A Cystic fibrosis transme 98.0 1.3E-06 4.4E-11 62.3 0.9 41 45-85 53-95 (290)
201 2yhs_A FTSY, cell division pro 98.0 2.5E-06 8.4E-11 65.0 2.5 33 53-85 292-324 (503)
202 1nn5_A Similar to deoxythymidy 98.0 4.6E-06 1.6E-10 55.8 3.5 31 54-84 9-39 (215)
203 1ak2_A Adenylate kinase isoenz 98.0 4E-06 1.4E-10 57.4 3.2 27 55-81 17-43 (233)
204 2ga8_A Hypothetical 39.9 kDa p 98.0 6.2E-06 2.1E-10 60.4 4.3 28 55-82 25-52 (359)
205 1s96_A Guanylate kinase, GMP k 98.0 5.1E-06 1.8E-10 56.8 3.7 29 52-80 14-42 (219)
206 3f9v_A Minichromosome maintena 98.0 1.6E-06 5.4E-11 67.3 1.1 27 54-80 327-353 (595)
207 1e4v_A Adenylate kinase; trans 98.0 4.3E-06 1.5E-10 56.4 3.1 26 56-81 2-27 (214)
208 2yvu_A Probable adenylyl-sulfa 98.0 6.4E-06 2.2E-10 54.3 3.8 29 53-81 12-40 (186)
209 2w0m_A SSO2452; RECA, SSPF, un 98.0 5.4E-06 1.8E-10 55.8 3.5 30 50-79 19-48 (235)
210 1ukz_A Uridylate kinase; trans 98.0 4.2E-06 1.4E-10 55.8 2.9 28 54-81 15-42 (203)
211 3lnc_A Guanylate kinase, GMP k 98.0 2.5E-06 8.5E-11 58.2 1.8 28 51-78 24-52 (231)
212 1rj9_A FTSY, signal recognitio 98.0 8.1E-06 2.8E-10 58.5 4.5 32 54-85 102-133 (304)
213 3b5x_A Lipid A export ATP-bind 98.0 5.2E-06 1.8E-10 64.1 3.8 43 44-86 357-401 (582)
214 3jvv_A Twitching mobility prot 97.9 5.8E-06 2E-10 60.5 3.7 30 52-81 121-150 (356)
215 3a4m_A L-seryl-tRNA(SEC) kinas 97.9 2.1E-05 7.2E-10 54.7 6.4 24 55-78 5-28 (260)
216 4e22_A Cytidylate kinase; P-lo 97.9 7.4E-06 2.5E-10 56.9 4.0 27 54-80 27-53 (252)
217 3ney_A 55 kDa erythrocyte memb 97.9 7.6E-06 2.6E-10 55.3 3.9 31 49-79 14-44 (197)
218 2gza_A Type IV secretion syste 97.9 4E-06 1.4E-10 61.3 2.6 37 49-85 170-206 (361)
219 3b85_A Phosphate starvation-in 97.9 2.8E-06 9.5E-11 57.7 1.5 32 53-85 21-52 (208)
220 4eaq_A DTMP kinase, thymidylat 97.9 1.8E-05 6.2E-10 54.3 5.6 27 54-80 26-52 (229)
221 1m7g_A Adenylylsulfate kinase; 97.9 1.1E-05 3.6E-10 54.4 4.3 29 51-79 22-50 (211)
222 2z0h_A DTMP kinase, thymidylat 97.9 1E-05 3.4E-10 53.4 4.1 22 57-78 3-24 (197)
223 3aez_A Pantothenate kinase; tr 97.9 9E-06 3.1E-10 58.4 4.0 29 52-80 88-116 (312)
224 2pez_A Bifunctional 3'-phospho 97.9 9.1E-06 3.1E-10 53.2 3.8 25 54-78 5-29 (179)
225 2xb4_A Adenylate kinase; ATP-b 97.9 5.7E-06 2E-10 56.3 2.8 26 56-81 2-27 (223)
226 1p9r_A General secretion pathw 97.9 1.6E-05 5.5E-10 59.3 5.4 32 54-85 167-198 (418)
227 3b60_A Lipid A export ATP-bind 97.9 4.9E-06 1.7E-10 64.2 2.7 42 45-86 358-401 (582)
228 3sop_A Neuronal-specific septi 97.9 7E-06 2.4E-10 57.8 3.3 28 56-83 4-31 (270)
229 2v54_A DTMP kinase, thymidylat 97.9 8.9E-06 3E-10 54.0 3.6 25 54-78 4-28 (204)
230 3ake_A Cytidylate kinase; CMP 97.9 8.3E-06 2.8E-10 54.3 3.3 26 56-81 4-29 (208)
231 2pt7_A CAG-ALFA; ATPase, prote 97.9 4.1E-06 1.4E-10 60.6 1.9 35 51-85 168-202 (330)
232 3qf4_B Uncharacterized ABC tra 97.9 4.9E-06 1.7E-10 64.5 2.3 40 50-89 377-416 (598)
233 3r20_A Cytidylate kinase; stru 97.9 7.9E-06 2.7E-10 56.5 3.0 28 54-81 9-36 (233)
234 2cvh_A DNA repair and recombin 97.8 1.2E-05 4.2E-10 53.8 3.8 27 50-76 16-42 (220)
235 3euj_A Chromosome partition pr 97.8 1.2E-05 4E-10 61.1 4.0 36 50-86 26-61 (483)
236 2dpy_A FLII, flagellum-specifi 97.8 1.4E-05 4.7E-10 60.0 4.4 41 44-85 146-188 (438)
237 1rz3_A Hypothetical protein rb 97.8 1.4E-05 4.7E-10 53.6 3.9 29 53-81 21-49 (201)
238 1sq5_A Pantothenate kinase; P- 97.8 1.7E-05 5.8E-10 56.7 4.5 26 54-79 80-105 (308)
239 1uf9_A TT1252 protein; P-loop, 97.8 1.2E-05 4E-10 53.3 3.5 27 54-81 8-34 (203)
240 2i3b_A HCR-ntpase, human cance 97.8 1.3E-05 4.5E-10 53.6 3.7 24 56-79 3-26 (189)
241 4a82_A Cystic fibrosis transme 97.8 3.9E-06 1.3E-10 64.8 1.2 42 45-86 356-399 (578)
242 1w5s_A Origin recognition comp 97.8 4E-05 1.4E-09 55.8 6.5 51 20-79 23-77 (412)
243 1cr0_A DNA primase/helicase; R 97.8 1.3E-05 4.4E-10 56.6 3.7 33 49-81 30-62 (296)
244 1n0w_A DNA repair protein RAD5 97.8 1.1E-05 3.8E-10 54.8 3.3 28 50-77 20-47 (243)
245 2yl4_A ATP-binding cassette SU 97.8 5E-06 1.7E-10 64.4 1.7 42 45-86 359-402 (595)
246 2qt1_A Nicotinamide riboside k 97.8 1.1E-05 3.6E-10 54.1 3.0 25 54-78 21-45 (207)
247 2oap_1 GSPE-2, type II secreti 97.8 2E-05 6.7E-10 60.2 4.6 33 52-84 258-290 (511)
248 1tf7_A KAIC; homohexamer, hexa 97.8 8.1E-06 2.8E-10 62.3 2.3 36 50-85 35-72 (525)
249 1lw7_A Transcriptional regulat 97.8 1.6E-05 5.6E-10 57.9 3.8 29 54-82 170-198 (365)
250 3qf4_A ABC transporter, ATP-bi 97.8 6.8E-06 2.3E-10 63.6 1.9 36 51-86 366-401 (587)
251 1vma_A Cell division protein F 97.8 2.3E-05 7.7E-10 56.2 4.4 32 52-83 102-133 (306)
252 1ex7_A Guanylate kinase; subst 97.8 1.5E-05 5.3E-10 53.3 3.2 24 56-79 3-26 (186)
253 1a5t_A Delta prime, HOLB; zinc 97.8 1.9E-05 6.7E-10 56.8 3.9 28 53-80 23-50 (334)
254 1uj2_A Uridine-cytidine kinase 97.8 1.7E-05 5.9E-10 54.8 3.5 28 54-81 22-49 (252)
255 1vht_A Dephospho-COA kinase; s 97.8 1.5E-05 5.1E-10 53.7 3.0 26 55-81 5-30 (218)
256 1odf_A YGR205W, hypothetical 3 97.8 9.8E-06 3.3E-10 57.7 2.1 28 53-80 30-57 (290)
257 1yqt_A RNAse L inhibitor; ATP- 97.7 1.7E-05 5.9E-10 60.8 3.6 34 51-84 44-77 (538)
258 3cmu_A Protein RECA, recombina 97.7 5.5E-05 1.9E-09 65.5 6.9 40 42-81 1412-1454(2050)
259 2fna_A Conserved hypothetical 97.7 6.1E-05 2.1E-09 53.6 6.2 44 20-81 14-57 (357)
260 2npi_A Protein CLP1; CLP1-PCF1 97.7 1.8E-05 6.1E-10 59.7 3.2 32 49-80 133-164 (460)
261 3kta_A Chromosome segregation 97.7 3.1E-05 1.1E-09 50.6 4.0 26 56-81 28-53 (182)
262 2obl_A ESCN; ATPase, hydrolase 97.7 2.5E-05 8.5E-10 56.9 3.8 41 44-85 60-102 (347)
263 1q3t_A Cytidylate kinase; nucl 97.7 2.1E-05 7.3E-10 53.8 3.2 28 54-81 16-43 (236)
264 1nlf_A Regulatory protein REPA 97.7 2.1E-05 7.3E-10 55.1 3.2 30 50-79 26-55 (279)
265 2qm8_A GTPase/ATPase; G protei 97.7 3.8E-05 1.3E-09 55.6 4.5 40 45-84 44-85 (337)
266 3tqc_A Pantothenate kinase; bi 97.7 3.1E-05 1.1E-09 55.9 3.9 25 56-80 94-118 (321)
267 3crm_A TRNA delta(2)-isopenten 97.7 2.6E-05 8.9E-10 56.4 3.5 27 55-81 6-32 (323)
268 3ozx_A RNAse L inhibitor; ATP 97.7 1.5E-05 5E-10 61.3 2.3 33 53-85 293-325 (538)
269 1gtv_A TMK, thymidylate kinase 97.7 9.3E-06 3.2E-10 54.3 1.1 24 57-80 3-26 (214)
270 1yqt_A RNAse L inhibitor; ATP- 97.7 1.8E-05 6.2E-10 60.7 2.4 32 53-84 311-342 (538)
271 3j16_B RLI1P; ribosome recycli 97.6 2.7E-05 9.2E-10 60.6 3.4 33 53-85 102-134 (608)
272 2dr3_A UPF0273 protein PH0284; 97.6 3.4E-05 1.2E-09 52.4 3.3 29 50-78 19-47 (247)
273 3bk7_A ABC transporter ATP-bin 97.6 2.1E-05 7.2E-10 61.2 2.5 33 53-85 381-413 (607)
274 1ltq_A Polynucleotide kinase; 97.6 3.5E-05 1.2E-09 54.3 3.4 24 55-78 3-26 (301)
275 3zvl_A Bifunctional polynucleo 97.6 2.7E-05 9.1E-10 57.9 2.9 28 54-81 258-285 (416)
276 3ozx_A RNAse L inhibitor; ATP 97.6 2.6E-05 9E-10 59.9 2.9 30 56-85 27-56 (538)
277 2h92_A Cytidylate kinase; ross 97.6 3.1E-05 1.1E-09 52.1 3.0 27 55-81 4-30 (219)
278 2gno_A DNA polymerase III, gam 97.6 5.5E-05 1.9E-09 54.1 4.3 25 54-78 18-42 (305)
279 2qen_A Walker-type ATPase; unk 97.6 0.00017 5.8E-09 51.2 6.8 44 20-79 13-56 (350)
280 1pzn_A RAD51, DNA repair and r 97.6 3.6E-05 1.2E-09 56.0 3.2 29 50-78 127-155 (349)
281 2f1r_A Molybdopterin-guanine d 97.6 1.6E-05 5.3E-10 52.5 1.1 26 56-81 4-29 (171)
282 3cr8_A Sulfate adenylyltranfer 97.6 3.2E-05 1.1E-09 59.6 2.9 32 52-83 367-398 (552)
283 3bk7_A ABC transporter ATP-bin 97.6 3.4E-05 1.2E-09 60.0 3.1 33 52-84 115-147 (607)
284 3hr8_A Protein RECA; alpha and 97.6 4E-05 1.4E-09 56.1 3.2 31 50-80 57-87 (356)
285 1qhl_A Protein (cell division 97.6 1.7E-05 5.7E-10 54.7 0.9 30 57-86 30-59 (227)
286 2f6r_A COA synthase, bifunctio 97.5 4.2E-05 1.4E-09 53.9 2.8 26 55-81 76-101 (281)
287 1tq4_A IIGP1, interferon-induc 97.5 5.2E-05 1.8E-09 56.5 3.1 29 56-84 71-99 (413)
288 4edh_A DTMP kinase, thymidylat 97.5 0.00012 4.1E-09 49.8 4.7 28 55-82 7-34 (213)
289 3gmt_A Adenylate kinase; ssgci 97.5 6.5E-05 2.2E-09 51.9 3.3 27 56-82 10-36 (230)
290 1u0l_A Probable GTPase ENGC; p 97.5 4.3E-05 1.5E-09 54.4 2.3 32 54-85 169-200 (301)
291 1nij_A Hypothetical protein YJ 97.5 8.9E-05 3.1E-09 53.1 4.0 23 56-78 6-28 (318)
292 3d3q_A TRNA delta(2)-isopenten 97.5 7.1E-05 2.4E-09 54.5 3.5 25 55-79 8-32 (340)
293 1np6_A Molybdopterin-guanine d 97.5 9.4E-05 3.2E-09 48.8 3.8 25 55-79 7-31 (174)
294 1x6v_B Bifunctional 3'-phospho 97.5 0.00018 6.2E-09 56.2 5.8 29 54-82 52-83 (630)
295 3fdi_A Uncharacterized protein 97.5 6.4E-05 2.2E-09 50.6 2.9 27 56-82 8-34 (201)
296 3g5u_A MCG1178, multidrug resi 97.5 4E-05 1.4E-09 64.1 2.3 42 45-86 405-448 (1284)
297 2qmh_A HPR kinase/phosphorylas 97.5 6.4E-05 2.2E-09 51.0 2.8 26 54-79 34-59 (205)
298 2qag_B Septin-6, protein NEDD5 97.5 6.8E-05 2.3E-09 56.1 3.2 29 49-77 35-65 (427)
299 4f4c_A Multidrug resistance pr 97.5 4.5E-05 1.5E-09 64.0 2.4 42 45-86 433-476 (1321)
300 4f4c_A Multidrug resistance pr 97.4 3.9E-05 1.3E-09 64.3 1.7 42 45-86 1094-1137(1321)
301 3a8t_A Adenylate isopentenyltr 97.4 6.9E-05 2.3E-09 54.5 2.8 26 55-80 41-66 (339)
302 2zr9_A Protein RECA, recombina 97.4 8.5E-05 2.9E-09 54.1 3.3 29 50-78 57-85 (349)
303 3j16_B RLI1P; ribosome recycli 97.4 3.8E-05 1.3E-09 59.8 1.4 27 57-83 381-407 (608)
304 1a7j_A Phosphoribulokinase; tr 97.4 3.7E-05 1.3E-09 54.6 1.2 24 56-79 7-30 (290)
305 2px0_A Flagellar biosynthesis 97.4 0.00011 3.7E-09 52.3 3.6 27 54-80 105-131 (296)
306 2yv5_A YJEQ protein; hydrolase 97.4 0.0001 3.4E-09 52.6 3.3 31 54-85 165-195 (302)
307 1zu4_A FTSY; GTPase, signal re 97.4 0.00012 4.2E-09 52.7 3.8 33 52-84 103-135 (320)
308 1ls1_A Signal recognition part 97.4 0.00024 8.3E-09 50.5 5.1 33 52-84 96-128 (295)
309 2rcn_A Probable GTPase ENGC; Y 97.4 9.2E-05 3.1E-09 54.2 3.0 30 55-84 216-246 (358)
310 1oix_A RAS-related protein RAB 97.4 0.00011 3.6E-09 48.5 3.0 24 56-79 31-54 (191)
311 3lda_A DNA repair protein RAD5 97.4 8.8E-05 3E-09 55.0 2.9 27 50-76 174-200 (400)
312 3foz_A TRNA delta(2)-isopenten 97.4 0.00012 4.2E-09 52.7 3.5 27 54-80 10-36 (316)
313 2ffh_A Protein (FFH); SRP54, s 97.4 0.00032 1.1E-08 52.4 5.8 32 53-84 97-128 (425)
314 2f9l_A RAB11B, member RAS onco 97.4 0.00012 4.2E-09 48.4 3.2 23 56-78 7-29 (199)
315 2iw3_A Elongation factor 3A; a 97.4 2.8E-05 9.5E-10 63.4 0.0 35 52-86 697-731 (986)
316 3exa_A TRNA delta(2)-isopenten 97.4 0.00012 4.2E-09 52.8 3.3 25 56-80 5-29 (322)
317 1xjc_A MOBB protein homolog; s 97.4 0.00014 4.9E-09 47.8 3.4 25 56-80 6-30 (169)
318 2vp4_A Deoxynucleoside kinase; 97.3 8E-05 2.7E-09 50.8 2.3 24 54-77 20-43 (230)
319 3g5u_A MCG1178, multidrug resi 97.3 7.3E-05 2.5E-09 62.6 2.2 36 51-86 1056-1091(1284)
320 2axn_A 6-phosphofructo-2-kinas 97.3 0.00014 4.7E-09 55.6 3.5 29 54-82 35-63 (520)
321 3upu_A ATP-dependent DNA helic 97.3 0.00033 1.1E-08 52.5 5.5 26 56-81 47-72 (459)
322 1v5w_A DMC1, meiotic recombina 97.3 0.0002 6.7E-09 51.9 4.0 29 50-78 118-146 (343)
323 2zts_A Putative uncharacterize 97.3 0.00015 5.2E-09 49.2 3.2 27 50-76 26-52 (251)
324 3tqf_A HPR(Ser) kinase; transf 97.3 0.00016 5.5E-09 48.0 3.0 24 54-77 16-39 (181)
325 1pui_A ENGB, probable GTP-bind 97.3 5.9E-05 2E-09 50.1 0.9 30 49-78 21-50 (210)
326 2z43_A DNA repair and recombin 97.3 0.00016 5.4E-09 51.9 3.2 29 50-78 103-131 (324)
327 1u94_A RECA protein, recombina 97.3 0.00018 6.1E-09 52.6 3.5 29 50-78 59-87 (356)
328 1g8f_A Sulfate adenylyltransfe 97.3 0.00017 5.7E-09 55.2 3.4 26 55-80 396-421 (511)
329 4i1u_A Dephospho-COA kinase; s 97.3 0.00012 4.2E-09 49.8 2.4 25 56-81 11-35 (210)
330 3eph_A TRNA isopentenyltransfe 97.3 0.00019 6.4E-09 53.4 3.5 26 55-80 3-28 (409)
331 2ocp_A DGK, deoxyguanosine kin 97.3 0.00018 6.2E-09 49.2 3.2 25 55-79 3-27 (241)
332 3kl4_A SRP54, signal recogniti 97.2 0.00021 7.3E-09 53.5 3.7 28 54-81 97-124 (433)
333 1tf7_A KAIC; homohexamer, hexa 97.2 0.00019 6.5E-09 54.7 3.4 32 50-81 277-308 (525)
334 4tmk_A Protein (thymidylate ki 97.2 0.0003 1E-08 47.8 3.9 27 55-81 4-30 (213)
335 3lv8_A DTMP kinase, thymidylat 97.2 0.00029 1E-08 48.6 3.8 28 54-81 27-54 (236)
336 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00025 8.7E-09 45.4 3.3 23 56-78 25-47 (149)
337 1t9h_A YLOQ, probable GTPase E 97.2 4.9E-05 1.7E-09 54.6 -0.3 29 53-81 172-200 (307)
338 3v9p_A DTMP kinase, thymidylat 97.2 0.00022 7.5E-09 49.0 3.0 27 54-80 25-51 (227)
339 3bh0_A DNAB-like replicative h 97.2 0.00035 1.2E-08 50.0 4.1 30 50-79 64-93 (315)
340 2i1q_A DNA repair and recombin 97.2 0.00021 7.3E-09 51.0 2.8 28 50-77 94-121 (322)
341 1bif_A 6-phosphofructo-2-kinas 97.1 0.00027 9.3E-09 53.1 3.4 29 54-82 39-67 (469)
342 3hdt_A Putative kinase; struct 97.1 0.0002 7E-09 49.0 2.5 26 56-81 16-41 (223)
343 2iw3_A Elongation factor 3A; a 97.1 0.00018 6E-09 58.8 2.4 24 53-76 460-483 (986)
344 1w1w_A Structural maintenance 97.1 0.00032 1.1E-08 52.1 3.7 30 52-81 24-53 (430)
345 4aby_A DNA repair protein RECN 97.1 7.7E-05 2.6E-09 54.8 0.2 35 45-79 50-85 (415)
346 1p5z_B DCK, deoxycytidine kina 97.1 0.00013 4.3E-09 50.7 1.3 26 54-79 24-49 (263)
347 2r6a_A DNAB helicase, replicat 97.1 0.00041 1.4E-08 52.0 4.1 30 50-79 199-228 (454)
348 2wji_A Ferrous iron transport 97.1 0.00027 9.1E-09 45.3 2.7 22 56-77 5-26 (165)
349 4akg_A Glutathione S-transfera 97.1 0.00084 2.9E-08 59.7 6.3 36 54-90 645-680 (2695)
350 2zej_A Dardarin, leucine-rich 97.1 0.00023 7.7E-09 46.5 2.2 22 56-77 4-25 (184)
351 1m8p_A Sulfate adenylyltransfe 97.1 0.00035 1.2E-08 54.1 3.6 25 55-79 397-421 (573)
352 3tmk_A Thymidylate kinase; pho 97.1 0.00049 1.7E-08 46.9 3.9 27 54-80 5-31 (216)
353 3e1s_A Exodeoxyribonuclease V, 97.1 0.00037 1.2E-08 53.9 3.7 27 55-81 205-231 (574)
354 3dm5_A SRP54, signal recogniti 97.1 0.00069 2.3E-08 50.9 5.0 28 54-81 100-127 (443)
355 1xp8_A RECA protein, recombina 97.1 0.00035 1.2E-08 51.2 3.3 29 50-78 70-98 (366)
356 3szr_A Interferon-induced GTP- 97.1 0.00018 6.1E-09 55.9 1.7 24 57-80 48-71 (608)
357 3hjn_A DTMP kinase, thymidylat 97.0 0.00064 2.2E-08 45.5 4.1 26 57-82 3-28 (197)
358 2wjg_A FEOB, ferrous iron tran 97.0 0.00039 1.3E-08 45.1 2.9 23 55-77 8-30 (188)
359 2dyk_A GTP-binding protein; GT 97.0 0.0005 1.7E-08 43.2 3.3 22 56-77 3-24 (161)
360 3ld9_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 47.0 3.6 27 54-80 21-47 (223)
361 1z2a_A RAS-related protein RAB 97.0 0.0005 1.7E-08 43.5 3.2 23 55-77 6-28 (168)
362 2www_A Methylmalonic aciduria 97.0 0.00055 1.9E-08 49.7 3.8 26 54-79 74-99 (349)
363 2r2a_A Uncharacterized protein 97.0 0.00053 1.8E-08 46.1 3.3 22 56-77 7-28 (199)
364 2ged_A SR-beta, signal recogni 97.0 0.00067 2.3E-08 44.2 3.7 25 54-78 48-72 (193)
365 4b3f_X DNA-binding protein smu 97.0 0.0005 1.7E-08 53.6 3.5 24 56-79 207-231 (646)
366 3qf7_A RAD50; ABC-ATPase, ATPa 97.0 0.00054 1.9E-08 50.0 3.5 23 56-78 25-47 (365)
367 1nrj_B SR-beta, signal recogni 97.0 0.00064 2.2E-08 45.3 3.6 25 54-78 12-36 (218)
368 2o5v_A DNA replication and rep 97.0 0.00065 2.2E-08 49.7 3.9 24 56-79 28-51 (359)
369 2gj8_A MNME, tRNA modification 97.0 0.00046 1.6E-08 44.6 2.8 24 55-78 5-28 (172)
370 1kao_A RAP2A; GTP-binding prot 97.0 0.00059 2E-08 42.9 3.3 22 56-77 5-26 (167)
371 1j8m_F SRP54, signal recogniti 96.9 0.00061 2.1E-08 48.5 3.6 28 54-81 98-125 (297)
372 2ce2_X GTPase HRAS; signaling 96.9 0.00054 1.9E-08 43.0 3.0 22 56-77 5-26 (166)
373 2orw_A Thymidine kinase; TMTK, 96.9 0.00058 2E-08 45.2 3.2 23 56-78 5-27 (184)
374 3qks_A DNA double-strand break 96.9 0.00064 2.2E-08 45.6 3.4 26 55-80 24-49 (203)
375 1u8z_A RAS-related protein RAL 96.9 0.00065 2.2E-08 42.8 3.2 23 55-77 5-27 (168)
376 2p5s_A RAS and EF-hand domain 96.9 0.00066 2.3E-08 44.7 3.3 25 53-77 27-51 (199)
377 2qnr_A Septin-2, protein NEDD5 96.9 0.00034 1.2E-08 49.8 2.0 22 56-77 20-41 (301)
378 2q6t_A DNAB replication FORK h 96.9 0.00073 2.5E-08 50.5 3.9 30 50-79 196-225 (444)
379 1ek0_A Protein (GTP-binding pr 96.9 0.00068 2.3E-08 42.9 3.2 23 56-78 5-27 (170)
380 1z0j_A RAB-22, RAS-related pro 96.9 0.0007 2.4E-08 42.9 3.3 23 56-78 8-30 (170)
381 1c9k_A COBU, adenosylcobinamid 96.9 0.00043 1.5E-08 46.0 2.3 24 57-81 2-25 (180)
382 1wms_A RAB-9, RAB9, RAS-relate 96.9 0.00071 2.4E-08 43.3 3.3 23 55-77 8-30 (177)
383 1wb9_A DNA mismatch repair pro 96.9 0.00059 2E-08 54.7 3.4 25 54-78 607-631 (800)
384 1z08_A RAS-related protein RAB 96.9 0.00074 2.5E-08 42.8 3.3 23 55-77 7-29 (170)
385 1ky3_A GTP-binding protein YPT 96.9 0.00073 2.5E-08 43.3 3.3 23 55-77 9-31 (182)
386 2nzj_A GTP-binding protein REM 96.9 0.00057 1.9E-08 43.6 2.8 23 55-77 5-27 (175)
387 2erx_A GTP-binding protein DI- 96.9 0.00066 2.3E-08 43.0 3.0 22 56-77 5-26 (172)
388 1upt_A ARL1, ADP-ribosylation 96.9 0.00096 3.3E-08 42.3 3.7 24 54-77 7-30 (171)
389 1g16_A RAS-related protein SEC 96.9 0.0007 2.4E-08 42.9 3.0 22 56-77 5-26 (170)
390 4ag6_A VIRB4 ATPase, type IV s 96.9 0.0013 4.4E-08 48.1 4.7 27 53-79 34-60 (392)
391 2v3c_C SRP54, signal recogniti 96.9 0.00055 1.9E-08 51.2 2.8 26 54-79 99-124 (432)
392 2wsm_A Hydrogenase expression/ 96.9 0.00074 2.5E-08 45.1 3.2 26 54-79 30-55 (221)
393 2qag_C Septin-7; cell cycle, c 96.8 0.00048 1.6E-08 51.4 2.4 23 57-79 34-56 (418)
394 3io5_A Recombination and repai 96.8 0.00079 2.7E-08 48.7 3.4 28 50-78 25-52 (333)
395 1c1y_A RAS-related protein RAP 96.8 0.00082 2.8E-08 42.4 3.2 22 56-77 5-26 (167)
396 3bc1_A RAS-related protein RAB 96.8 0.00081 2.8E-08 43.4 3.2 23 55-77 12-34 (195)
397 1r2q_A RAS-related protein RAB 96.8 0.00084 2.9E-08 42.4 3.2 22 56-77 8-29 (170)
398 2p67_A LAO/AO transport system 96.8 0.001 3.4E-08 48.1 3.9 26 54-79 56-81 (341)
399 1ewq_A DNA mismatch repair pro 96.8 0.00079 2.7E-08 53.7 3.6 25 54-78 576-600 (765)
400 3ux8_A Excinuclease ABC, A sub 96.8 0.00049 1.7E-08 53.9 2.4 26 46-71 34-61 (670)
401 2lkc_A Translation initiation 96.8 0.00094 3.2E-08 42.7 3.4 24 54-77 8-31 (178)
402 3k53_A Ferrous iron transport 96.8 0.00064 2.2E-08 47.3 2.7 24 55-78 4-27 (271)
403 4hlc_A DTMP kinase, thymidylat 96.8 0.0019 6.5E-08 43.5 4.9 25 56-80 4-28 (205)
404 2hxs_A RAB-26, RAS-related pro 96.8 0.00087 3E-08 42.9 3.1 23 55-77 7-29 (178)
405 2gks_A Bifunctional SAT/APS ki 96.8 0.00082 2.8E-08 51.7 3.5 26 55-80 373-398 (546)
406 3q85_A GTP-binding protein REM 96.8 0.00085 2.9E-08 42.6 3.1 21 56-76 4-24 (169)
407 3thx_B DNA mismatch repair pro 96.8 0.0006 2.1E-08 55.4 2.8 25 53-77 672-696 (918)
408 3clv_A RAB5 protein, putative; 96.8 0.0012 4.1E-08 42.8 3.8 24 54-77 7-30 (208)
409 4dsu_A GTPase KRAS, isoform 2B 96.8 0.00095 3.2E-08 43.0 3.3 23 56-78 6-28 (189)
410 4a1f_A DNAB helicase, replicat 96.8 0.0011 3.7E-08 48.2 3.9 30 50-79 42-71 (338)
411 1f6b_A SAR1; gtpases, N-termin 96.8 0.0011 3.7E-08 43.8 3.6 22 55-76 26-47 (198)
412 3con_A GTPase NRAS; structural 96.8 0.00094 3.2E-08 43.4 3.2 22 56-77 23-44 (190)
413 2fn4_A P23, RAS-related protei 96.8 0.00089 3E-08 42.8 3.0 23 55-77 10-32 (181)
414 1r8s_A ADP-ribosylation factor 96.8 0.001 3.5E-08 42.0 3.2 22 56-77 2-23 (164)
415 1svi_A GTP-binding protein YSX 96.8 0.00099 3.4E-08 43.4 3.2 24 54-77 23-46 (195)
416 2y8e_A RAB-protein 6, GH09086P 96.8 0.00091 3.1E-08 42.7 3.0 23 55-77 15-37 (179)
417 2oil_A CATX-8, RAS-related pro 96.8 0.001 3.4E-08 43.4 3.2 23 55-77 26-48 (193)
418 2a9k_A RAS-related protein RAL 96.8 0.001 3.5E-08 42.8 3.2 23 55-77 19-41 (187)
419 1z0f_A RAB14, member RAS oncog 96.8 0.001 3.5E-08 42.4 3.2 24 55-78 16-39 (179)
420 3q72_A GTP-binding protein RAD 96.8 0.0008 2.8E-08 42.5 2.7 21 56-76 4-24 (166)
421 2atv_A RERG, RAS-like estrogen 96.8 0.0012 4E-08 43.3 3.5 24 54-77 28-51 (196)
422 3ux8_A Excinuclease ABC, A sub 96.7 0.0003 1E-08 55.1 0.7 22 54-75 348-369 (670)
423 2efe_B Small GTP-binding prote 96.7 0.0011 3.8E-08 42.5 3.3 23 55-77 13-35 (181)
424 3lxx_A GTPase IMAP family memb 96.7 0.00092 3.2E-08 45.5 3.0 24 55-78 30-53 (239)
425 2b8t_A Thymidine kinase; deoxy 96.7 0.0012 4E-08 45.3 3.5 23 56-78 14-36 (223)
426 3tw8_B RAS-related protein RAB 96.7 0.001 3.4E-08 42.6 3.0 23 55-77 10-32 (181)
427 3t1o_A Gliding protein MGLA; G 96.7 0.0011 3.8E-08 42.9 3.2 24 55-78 15-38 (198)
428 1m7b_A RND3/RHOE small GTP-bin 96.7 0.001 3.5E-08 43.1 3.0 23 55-77 8-30 (184)
429 1moz_A ARL1, ADP-ribosylation 96.7 0.0011 3.8E-08 42.6 3.2 24 53-76 17-40 (183)
430 2hf9_A Probable hydrogenase ni 96.7 0.0013 4.6E-08 44.0 3.6 26 54-79 38-63 (226)
431 1w36_D RECD, exodeoxyribonucle 96.7 0.0011 3.8E-08 51.4 3.6 25 55-79 165-189 (608)
432 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0013 4.5E-08 48.1 3.8 23 56-78 181-203 (364)
433 3qkt_A DNA double-strand break 96.7 0.0013 4.3E-08 47.4 3.6 23 56-78 25-47 (339)
434 2bme_A RAB4A, RAS-related prot 96.7 0.0011 3.7E-08 42.8 3.0 23 55-77 11-33 (186)
435 1m2o_B GTP-binding protein SAR 96.7 0.0011 3.7E-08 43.5 3.0 21 56-76 25-45 (190)
436 1z6t_A APAF-1, apoptotic prote 96.7 0.0031 1.1E-07 48.2 6.0 46 20-77 125-170 (591)
437 3p32_A Probable GTPase RV1496/ 96.7 0.0012 4.1E-08 47.9 3.5 25 54-78 79-103 (355)
438 2gk6_A Regulator of nonsense t 96.7 0.0011 3.8E-08 51.5 3.5 23 56-78 197-219 (624)
439 2g6b_A RAS-related protein RAB 96.7 0.0012 4.2E-08 42.2 3.2 24 55-78 11-34 (180)
440 3llm_A ATP-dependent RNA helic 96.7 0.0018 6.1E-08 44.1 4.1 23 54-76 76-98 (235)
441 2gf9_A RAS-related protein RAB 96.7 0.0013 4.3E-08 42.8 3.2 24 55-78 23-46 (189)
442 3thx_A DNA mismatch repair pro 96.7 0.00098 3.4E-08 54.3 3.2 23 54-76 662-684 (934)
443 3tkl_A RAS-related protein RAB 96.7 0.0013 4.4E-08 42.8 3.2 24 55-78 17-40 (196)
444 2j37_W Signal recognition part 96.7 0.0013 4.6E-08 50.1 3.7 26 54-79 101-126 (504)
445 1ko7_A HPR kinase/phosphatase; 96.7 0.0011 3.8E-08 47.7 3.1 24 54-77 144-167 (314)
446 3kkq_A RAS-related protein M-R 96.7 0.0013 4.5E-08 42.3 3.2 23 55-77 19-41 (183)
447 3ihw_A Centg3; RAS, centaurin, 96.7 0.0013 4.6E-08 42.8 3.3 22 56-77 22-43 (184)
448 1mh1_A RAC1; GTP-binding, GTPa 96.7 0.0013 4.5E-08 42.2 3.2 22 56-77 7-28 (186)
449 2cxx_A Probable GTP-binding pr 96.7 0.00088 3E-08 43.3 2.3 22 56-77 3-24 (190)
450 2r8r_A Sensor protein; KDPD, P 96.6 0.0015 5E-08 45.0 3.5 26 56-81 8-33 (228)
451 2b6h_A ADP-ribosylation factor 96.6 0.0015 5.2E-08 42.8 3.5 24 53-76 28-51 (192)
452 1e69_A Chromosome segregation 96.6 0.00084 2.9E-08 48.0 2.3 23 56-78 26-48 (322)
453 1fzq_A ADP-ribosylation factor 96.6 0.0019 6.4E-08 41.9 3.8 24 54-77 16-39 (181)
454 3pqc_A Probable GTP-binding pr 96.6 0.00098 3.4E-08 43.2 2.5 24 55-78 24-47 (195)
455 2bov_A RAla, RAS-related prote 96.6 0.0014 4.7E-08 43.0 3.2 23 55-77 15-37 (206)
456 1vg8_A RAS-related protein RAB 96.6 0.0014 4.9E-08 43.0 3.3 24 55-78 9-32 (207)
457 3ice_A Transcription terminati 96.6 0.0017 5.8E-08 48.3 3.9 26 53-78 173-198 (422)
458 2fg5_A RAB-22B, RAS-related pr 96.6 0.0013 4.6E-08 42.9 3.0 23 55-77 24-46 (192)
459 3bwd_D RAC-like GTP-binding pr 96.6 0.0015 5.2E-08 41.9 3.2 23 55-77 9-31 (182)
460 3bgw_A DNAB-like replicative h 96.6 0.0017 5.8E-08 48.7 3.9 30 50-79 193-222 (444)
461 1z06_A RAS-related protein RAB 96.6 0.0015 5.3E-08 42.4 3.3 23 55-77 21-43 (189)
462 3dz8_A RAS-related protein RAB 96.6 0.0014 4.7E-08 42.8 3.0 23 56-78 25-47 (191)
463 1x3s_A RAS-related protein RAB 96.6 0.0015 5.3E-08 42.3 3.2 23 55-77 16-38 (195)
464 1knx_A Probable HPR(Ser) kinas 96.6 0.0011 3.9E-08 47.6 2.7 23 54-76 147-169 (312)
465 3c5c_A RAS-like protein 12; GD 96.6 0.0016 5.5E-08 42.5 3.3 22 56-77 23-44 (187)
466 2a5j_A RAS-related protein RAB 96.6 0.0016 5.5E-08 42.4 3.2 22 56-77 23-44 (191)
467 1zd9_A ADP-ribosylation factor 96.6 0.0016 5.5E-08 42.4 3.2 23 55-77 23-45 (188)
468 2fz4_A DNA repair protein RAD2 96.6 0.0015 5.1E-08 44.8 3.1 29 56-84 110-138 (237)
469 1zbd_A Rabphilin-3A; G protein 96.6 0.0014 4.8E-08 43.0 2.9 23 55-77 9-31 (203)
470 3reg_A RHO-like small GTPase; 96.6 0.0017 5.7E-08 42.4 3.2 24 55-78 24-47 (194)
471 3oes_A GTPase rhebl1; small GT 96.6 0.0015 5.1E-08 43.0 3.0 25 54-78 24-48 (201)
472 3t5g_A GTP-binding protein RHE 96.6 0.0015 5.2E-08 41.9 3.0 22 55-76 7-28 (181)
473 2a5y_B CED-4; apoptosis; HET: 96.5 0.0048 1.6E-07 47.1 6.1 43 23-76 132-174 (549)
474 2gf0_A GTP-binding protein DI- 96.5 0.0016 5.4E-08 42.4 3.0 23 55-77 9-31 (199)
475 2bcg_Y Protein YP2, GTP-bindin 96.5 0.0016 5.4E-08 42.9 3.0 23 55-77 9-31 (206)
476 3cph_A RAS-related protein SEC 96.5 0.0018 6E-08 42.7 3.2 24 54-77 20-43 (213)
477 1ega_A Protein (GTP-binding pr 96.5 0.0014 4.8E-08 46.5 2.8 22 56-77 10-31 (301)
478 2iwr_A Centaurin gamma 1; ANK 96.5 0.0013 4.4E-08 42.2 2.4 23 55-77 8-30 (178)
479 1gwn_A RHO-related GTP-binding 96.5 0.0017 5.7E-08 43.3 3.0 23 55-77 29-51 (205)
480 1ni3_A YCHF GTPase, YCHF GTP-b 96.5 0.0019 6.6E-08 47.8 3.6 24 54-77 20-43 (392)
481 2ew1_A RAS-related protein RAB 96.5 0.0017 5.8E-08 43.1 3.0 23 55-77 27-49 (201)
482 1ksh_A ARF-like protein 2; sma 96.5 0.0016 5.3E-08 42.1 2.6 25 53-77 17-41 (186)
483 3b1v_A Ferrous iron uptake tra 96.5 0.0016 5.4E-08 45.7 2.8 22 56-77 5-26 (272)
484 2fh5_B SR-beta, signal recogni 96.5 0.0021 7.1E-08 42.6 3.2 23 55-77 8-30 (214)
485 2o8b_B DNA mismatch repair pro 96.4 0.0022 7.4E-08 52.8 3.8 23 54-77 789-811 (1022)
486 3iby_A Ferrous iron transport 96.4 0.0017 5.9E-08 45.0 2.7 22 56-77 3-24 (256)
487 2fv8_A H6, RHO-related GTP-bin 96.4 0.0021 7.2E-08 42.5 3.0 23 55-77 26-48 (207)
488 2wjy_A Regulator of nonsense t 96.4 0.0021 7.2E-08 51.5 3.5 23 56-78 373-395 (800)
489 3cmw_A Protein RECA, recombina 96.4 0.0028 9.6E-08 54.5 4.4 38 43-80 718-758 (1706)
490 1zj6_A ADP-ribosylation factor 96.4 0.0018 6.3E-08 42.0 2.7 23 54-76 16-38 (187)
491 1q57_A DNA primase/helicase; d 96.4 0.0018 6.2E-08 49.0 2.9 31 50-80 238-268 (503)
492 2cjw_A GTP-binding protein GEM 96.4 0.0025 8.5E-08 41.9 3.2 22 56-77 8-29 (192)
493 1udx_A The GTP-binding protein 96.4 0.00073 2.5E-08 50.4 0.7 24 54-77 157-180 (416)
494 2fu5_C RAS-related protein RAB 96.4 0.0012 4.1E-08 42.5 1.6 23 55-77 9-31 (183)
495 1dek_A Deoxynucleoside monopho 96.4 0.0026 8.9E-08 44.0 3.4 25 57-81 4-28 (241)
496 2atx_A Small GTP binding prote 96.4 0.0023 8E-08 41.6 3.0 22 56-77 20-41 (194)
497 3a1s_A Iron(II) transport prot 96.4 0.0021 7.2E-08 44.6 3.0 22 56-77 7-28 (258)
498 4bas_A ADP-ribosylation factor 96.4 0.0022 7.6E-08 41.7 2.9 24 54-77 17-40 (199)
499 2f7s_A C25KG, RAS-related prot 96.4 0.0024 8.4E-08 42.3 3.1 23 55-77 26-48 (217)
500 2q3h_A RAS homolog gene family 96.4 0.002 7E-08 42.2 2.7 24 54-77 20-43 (201)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-27 Score=175.26 Aligned_cols=104 Identities=38% Similarity=0.691 Sum_probs=96.8
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+.+|+.+|++|+++|+++++|+||+||||||||++|+++|++++.+++. ++++
T Consensus 141 ~~p~v~~~--dIgGl~~~k~~l-~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~-v~~s 216 (405)
T 4b4t_J 141 KVPDSTYD--MVGGLTKQIKEI-KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR-VSGA 216 (405)
T ss_dssp CSCSCCGG--GSCSCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred CCCCCCHH--HhCCHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE-EEhH
Confidence 34677777 699999999998 9999999999999999999999999999999999999999999999999766 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++++|+.|++++|.+
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~I 244 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSI 244 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEE
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCce
Confidence 9999999999999999999999988754
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-26 Score=171.22 Aligned_cols=104 Identities=32% Similarity=0.634 Sum_probs=97.1
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+.+++.+++.|+.+|+++++|+|||||||||||++|+++|++++.+++. ++.+
T Consensus 175 ~~p~v~~~--DIgGld~~k~~L-~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~-v~~s 250 (437)
T 4b4t_I 175 KSPTESYS--DIGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR-IVGS 250 (437)
T ss_dssp SSCCCCGG--GTCSCHHHHHHH-HHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE-EESG
T ss_pred cCCCCcce--ecCcHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE-EEHH
Confidence 45778887 599999999998 9999999999999999999999999999999999999999999999999766 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++.+|+.|++++|.+
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~I 278 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSI 278 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcE
Confidence 9999999999999999999999988754
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5e-26 Score=170.33 Aligned_cols=104 Identities=36% Similarity=0.596 Sum_probs=96.6
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+++. ++++
T Consensus 174 ~~p~~t~~--digGl~~~k~~l-~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~-v~~s 249 (434)
T 4b4t_M 174 EKPTETYS--DVGGLDKQIEEL-VEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK-LAAP 249 (434)
T ss_dssp SSCSCCGG--GSCSCHHHHHHH-HHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred CCCCCChH--hcCcHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE-Eehh
Confidence 45677777 699999999998 9999999999999999999999999999999999999999999999999766 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++.+|+.|+.++|.+
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~I 277 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTI 277 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEE
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999999999998754
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-26 Score=170.49 Aligned_cols=104 Identities=37% Similarity=0.664 Sum_probs=96.9
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+.+|+.+|++|..+|+++++|+|||||||||||++|+++|++++.+++. ++++
T Consensus 174 ~~p~v~~~--digGl~~~k~~l-~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~-v~~s 249 (437)
T 4b4t_L 174 EQGEITFD--GIGGLTEQIREL-REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF-SPAS 249 (437)
T ss_dssp ESCSSCSG--GGCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred cCCCCChh--HhCChHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-Eehh
Confidence 46777787 599999999998 9999999999999999999999999999999999999999999999999765 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++.+|..|+.++|.+
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~I 277 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCI 277 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEE
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999987754
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6.1e-26 Score=169.66 Aligned_cols=104 Identities=35% Similarity=0.638 Sum_probs=96.4
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++. ++.+
T Consensus 165 ~~p~v~~~--digGl~~~k~~l-~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~-v~~~ 240 (428)
T 4b4t_K 165 EKPDVTYA--DVGGLDMQKQEI-REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR-VNGS 240 (428)
T ss_dssp SSCSCCGG--GSCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred CCCCCCHH--HhccHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE-Eecc
Confidence 45667777 699999999998 9999999999999999999999999999999999999999999999999766 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++.+|+.|++++|.+
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~I 268 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSI 268 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEE
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999988754
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.9e-26 Score=170.90 Aligned_cols=104 Identities=37% Similarity=0.637 Sum_probs=96.7
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|++.|+ ||+|++++++++ ++.+.+++.+++.|..+|+++++|+||+||||||||++|+++|++++.+++. ++.+
T Consensus 202 e~P~vt~~--DIgGl~~~k~~L-~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~-vs~s 277 (467)
T 4b4t_H 202 EKPDVTYS--DVGGCKDQIEKL-REVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR-VIGS 277 (467)
T ss_dssp SSCSCCCS--SCTTCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred CCCCCCHH--HhccHHHHHHHH-HHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE-EEhH
Confidence 45777777 699999999998 9999999999999999999999999999999999999999999999999766 7899
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.++|+|++++.++.+|+.|+.++|.+
T Consensus 278 ~L~sk~vGesek~ir~lF~~Ar~~aP~I 305 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEMARTKKACI 305 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred HhhcccCCHHHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999988753
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.86 E-value=3.5e-23 Score=164.16 Aligned_cols=103 Identities=36% Similarity=0.662 Sum_probs=94.3
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|.+.|+ ||+|++++++++ ++.+.+++.+|++|..+++.+++|+||+||||||||++|+++|++++.+++. +++.+
T Consensus 198 ~~~v~~~--dIgGl~~~~~~l-~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~-v~~~~ 273 (806)
T 3cf2_A 198 LNEVGYD--DIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPE 273 (806)
T ss_dssp SSSCCGG--GCCSCCTTHHHH-HHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE-EEHHH
T ss_pred CCCCChh--hhcCHHHHHHHH-HHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE-EEhHH
Confidence 3456666 699999999998 9999999999999999999999999999999999999999999999998665 78999
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
+.++|.|+++++++.+|+.|+.++|.+
T Consensus 274 l~sk~~gese~~lr~lF~~A~~~~PsI 300 (806)
T 3cf2_A 274 IMSKLAGESESNLRKAFEEAEKNAPAI 300 (806)
T ss_dssp HHSSCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred hhcccchHHHHHHHHHHHHHHHcCCeE
Confidence 999999999999999999999887653
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.84 E-value=4.9e-22 Score=157.65 Aligned_cols=103 Identities=36% Similarity=0.628 Sum_probs=94.5
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|.+.|+ +|+|++++++++ .+.+.+++.+++.|.++++.+++|+||+||||||||++|+++|++++.+++. ++.++
T Consensus 471 ~p~v~w~--diggl~~~k~~l-~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~-v~~~~ 546 (806)
T 3cf2_A 471 VPQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPE 546 (806)
T ss_dssp CCCCCST--TCCSCHHHHHHH-TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE-CCHHH
T ss_pred CCCCCHH--HhCCHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEE-eccch
Confidence 4555555 699999999998 9999999999999999999999999999999999999999999999999766 78999
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++++|+|+++++++++|+.|++.+|.+
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEE
T ss_pred hhccccchHHHHHHHHHHHHHHcCCce
Confidence 999999999999999999999987754
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.82 E-value=9.6e-21 Score=134.43 Aligned_cols=104 Identities=35% Similarity=0.569 Sum_probs=85.4
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|.+.|+ ||+|++++++++ ++.+..++.+++.++.+++..++|++|+||||||||++++++|+.++..++. +++.
T Consensus 3 ~~~~~~~~--di~g~~~~~~~l-~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~-i~g~ 78 (274)
T 2x8a_A 3 TVPNVTWA--DIGALEDIREEL-TMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS-VKGP 78 (274)
T ss_dssp -----------CCHHHHHHHHH-HHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE-EETT
T ss_pred CCCCCCHH--HhCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE-EEcH
Confidence 34666666 699999999988 8888999999999999999999999999999999999999999999886544 6788
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
++.+.+.++.++.++.+|+.|+...+.+
T Consensus 79 ~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 79 ELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp TTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 8888889999999999999997765543
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.77 E-value=2.7e-19 Score=128.20 Aligned_cols=102 Identities=35% Similarity=0.622 Sum_probs=90.3
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|.+.|+ +|+|++++++++ ++.+..++.+++.+..+++.++.+++|+||||||||++|+++|+.++.+++. +++.
T Consensus 8 ~~~~~~~~--di~G~~~~~~~l-~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~-v~~~ 83 (301)
T 3cf0_A 8 EVPQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGP 83 (301)
T ss_dssp ECCCCCGG--GSCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE-ECHH
T ss_pred cCCCCCHH--HhCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE-EEhH
Confidence 34666666 599999999988 8889899999999999999999999999999999999999999999877655 6788
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
++.+.++|+.++.++.+|+.|+...+
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p 109 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAP 109 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCC
Confidence 88889999999999999999987654
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=125.03 Aligned_cols=101 Identities=29% Similarity=0.510 Sum_probs=85.7
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh-cCCCCeeecC
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML-NAREPKIVNG 88 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~-~~~~~~~~~~ 88 (121)
..|.+.|+ ||+|++++++.+ ++.+.+++.+++++.. +..++++++|+||||||||++|+++|+++ +.+++. ++.
T Consensus 5 ~~~~~~~~--di~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~-i~~ 79 (322)
T 1xwi_A 5 ERPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-ISS 79 (322)
T ss_dssp ECCCCCGG--GSCSCHHHHHHH-HHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE-EEC
T ss_pred cCCCCCHH--HhcCHHHHHHHH-HHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE-EEh
Confidence 45666777 599999999988 8888899988888874 35677899999999999999999999998 555444 788
Q ss_pred cccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 89 PQVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
+++.+.|.++.++.++.+|+.|+...+
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~~~~ 106 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLARENKP 106 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHHTSS
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence 889999999999999999999987654
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=9.4e-18 Score=118.50 Aligned_cols=102 Identities=38% Similarity=0.686 Sum_probs=90.0
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|+..|+ +++|++++++++ .+.+..++..++.++.+++..+.+++|+||||||||++++++|+.++.++.. +...
T Consensus 10 ~~~~~~~~--~i~G~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~-v~~~ 85 (285)
T 3h4m_A 10 ERPNVRYE--DIGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR-VVGS 85 (285)
T ss_dssp SSCCCCGG--GSCSCHHHHHHH-HHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE-EEGG
T ss_pred CCCCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-EehH
Confidence 45566666 599999999998 8888888899999999999999999999999999999999999999888655 6778
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
++...+.++.+..++.+|..++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (285)
T 3h4m_A 86 ELVKKFIGEGASLVKDIFKLAKEKAP 111 (285)
T ss_dssp GGCCCSTTHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhccchHHHHHHHHHHHHHHcCC
Confidence 88888999999999999999887654
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.72 E-value=4.5e-18 Score=122.76 Aligned_cols=101 Identities=33% Similarity=0.551 Sum_probs=86.9
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
..|.+.|+ +|+|++.+++++ ++.+..++..++.+.. +..++.+++|+||||||||++|+++|++++.+++. +++.
T Consensus 11 ~~~~~~~~--di~G~~~~~~~l-~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~-v~~~ 85 (322)
T 3eie_A 11 EKPNVKWE--DVAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSS 85 (322)
T ss_dssp ECCCCCGG--GSCSCHHHHHHH-HHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE-EEHH
T ss_pred cCCCCCHH--HhcChHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE-EchH
Confidence 45666676 599999999998 8888888888888776 44667899999999999999999999999988665 7788
Q ss_pred ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
++.+.|.++.+..++.+|+.|+...+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~ 111 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKP 111 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSS
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999987654
No 14
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.68 E-value=7.7e-17 Score=112.25 Aligned_cols=97 Identities=30% Similarity=0.490 Sum_probs=75.9
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
..+|+ +++|++++++++ ++.+.. +..++.+..++...+.+++|+||||||||++|+++|+.++.+++. ++..++.
T Consensus 2 ~~~~~--~i~G~~~~~~~l-~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFK--DVAGMHEAKLEV-REFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA-MAGAEFV 76 (262)
T ss_dssp CCCTT--SSCSCHHHHHHH-HHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE-EETTTTS
T ss_pred CCCHH--HhCCHHHHHHHH-HHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-echHHHH
Confidence 45555 599999999988 555543 556778888898999999999999999999999999999988655 6777888
Q ss_pred hhhhchhHHHHHHHHHHHHHHH
Q psy3632 93 DKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
..+.+..+..++.+|+.|+...
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~~~ 98 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARARA 98 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTC
T ss_pred hhccChhHHHHHHHHHHHHhcC
Confidence 8888888999999999988654
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.68 E-value=1.9e-17 Score=121.11 Aligned_cols=100 Identities=33% Similarity=0.566 Sum_probs=81.5
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.+...|+ +|+|++.+++.+ ++.+.+++..++.+.. +..++.+++|+||||||||++|+++|+.++.+++. ++..+
T Consensus 45 ~~~~~~~--di~G~~~~~~~l-~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~-v~~~~ 119 (355)
T 2qp9_X 45 KPNVKWE--DVAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSD 119 (355)
T ss_dssp --CCCGG--GSCCGGGHHHHH-HHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE-EEHHH
T ss_pred CCCCCHH--HhCCHHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-eeHHH
Confidence 3455666 699999999988 8888888888888876 55778899999999999999999999999988655 67788
Q ss_pred cchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
+...|.++.+..++.+|+.|+...+
T Consensus 120 l~~~~~g~~~~~~~~~f~~a~~~~~ 144 (355)
T 2qp9_X 120 LVSKWMGESEKLVKQLFAMARENKP 144 (355)
T ss_dssp HHSCC---CHHHHHHHHHHHHHTSS
T ss_pred HhhhhcchHHHHHHHHHHHHHHcCC
Confidence 8888999999999999999987544
No 16
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=5.3e-17 Score=113.40 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=77.3
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+...|+ +|+|++.+++++ .+.+.. +.+++.+..++...+.+++|+||||||||++++++|+.++.+++. +++.++
T Consensus 7 ~~~~~~--~i~G~~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFA--DVAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDF 81 (257)
T ss_dssp SCCCGG--GSCSCHHHHHHT-HHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE-ECSCSS
T ss_pred CCCCHH--HhcCcHHHHHHH-HHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEE-EeHHHH
Confidence 445555 699999999988 555543 556777888888889999999999999999999999999887654 778888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
...+.++.++.++.+|+.|+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~ 105 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAP 105 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCS
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCC
Confidence 888888899999999999876543
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.67 E-value=1.5e-16 Score=120.50 Aligned_cols=99 Identities=32% Similarity=0.586 Sum_probs=84.7
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+...|+ ||+|++.+++++ ++.+. .+..++.+.+++...+++++|+||||||||++++++|++++.+++. +++.++
T Consensus 11 ~~~~f~--di~G~~~~~~~l-~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~-is~~~~ 85 (476)
T 2ce7_A 11 KRVTFK--DVGGAEEAIEEL-KEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFH-ISGSDF 85 (476)
T ss_dssp CCCCGG--GCCSCHHHHHHH-HHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGT
T ss_pred CCCCHH--HhCCcHHHHHHH-HHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee-CCHHHH
Confidence 345555 699999999998 55554 4567888999999999999999999999999999999999988665 678888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
...+.|..+..++.+|+.|+..+|
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~~p 109 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAHAP 109 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhcccHHHHHHHHHHHHhcCC
Confidence 888999999999999999987654
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.65 E-value=1.1e-16 Score=121.49 Aligned_cols=94 Identities=39% Similarity=0.700 Sum_probs=86.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES 99 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 99 (121)
+|+|++.+++++ ++.+..++.+++++..++..++.+++|+||||||||++|++++..++.+++. +++.++.+.+.++.
T Consensus 205 ~i~G~~~~~~~l-~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~-vn~~~l~~~~~g~~ 282 (489)
T 3hu3_A 205 DIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPEIMSKLAGES 282 (489)
T ss_dssp GCCSCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE-EEHHHHHTSCTTHH
T ss_pred HcCCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE-EEchHhhhhhcchh
Confidence 699999999998 8889999999999999999999999999999999999999999999887655 78888889999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3632 100 EANVRRLFADAEEEEK 115 (121)
Q Consensus 100 ~~~i~~~f~~a~~~~~ 115 (121)
+..++.+|+.|+...+
T Consensus 283 ~~~~~~~f~~A~~~~p 298 (489)
T 3hu3_A 283 ESNLRKAFEEAEKNAP 298 (489)
T ss_dssp HHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999987643
No 19
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.65 E-value=5.1e-17 Score=121.98 Aligned_cols=101 Identities=29% Similarity=0.510 Sum_probs=75.1
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh-cCCCCeeecC
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML-NAREPKIVNG 88 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~-~~~~~~~~~~ 88 (121)
..|.+.|+ +|+|++.+++.+ .+.+..++..++++.. +..++++++|+||||||||++|+++|..+ +.+++. ++.
T Consensus 127 ~~~~~~~~--di~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~-v~~ 201 (444)
T 2zan_A 127 ERPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-ISS 201 (444)
T ss_dssp CCCCCCGG--GSCSCHHHHHHH-HHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE-ECC
T ss_pred cCCCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE-EeH
Confidence 34566666 599999999988 7888888877777764 34567899999999999999999999998 655444 788
Q ss_pred cccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632 89 PQVLDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
+++.+.|.|+.+..++.+|+.|+...+
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~ 228 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKP 228 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCS
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCC
Confidence 889899999999999999999987544
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.63 E-value=9.3e-17 Score=127.98 Aligned_cols=100 Identities=36% Similarity=0.679 Sum_probs=89.1
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
.+.|+ +|+|++.+++++ ++.+..++.++++++.+++.++.+++|+||||||||++++++|+.++.+++. +++.++.
T Consensus 200 ~v~~~--di~G~~~~~~~l-~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~-v~~~~l~ 275 (806)
T 1ypw_A 200 EVGYD--DVGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPEIM 275 (806)
T ss_dssp SCCGG--GCCSCSGGGGHH-HHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE-EEHHHHS
T ss_pred CCCHH--HhCChHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE-EEchHhh
Confidence 45555 699999999998 8889999999999999999999999999999999999999999999877554 7788888
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHh
Q psy3632 93 DKYVGESEANVRRLFADAEEEEKR 116 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~~~ 116 (121)
+.+.++.+..++.+|+.++.+.+.
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHCSE
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCc
Confidence 889999999999999999887543
No 21
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.62 E-value=2e-16 Score=126.11 Aligned_cols=102 Identities=36% Similarity=0.638 Sum_probs=90.9
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+.+.|+ +++|++++++.+ .+.+.+++.+++.+.++++.++.+++|+||||||||++++++|+.++.+++. ++++++
T Consensus 472 ~~v~~~--di~gl~~vk~~l-~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~-v~~~~l 547 (806)
T 1ypw_A 472 PQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPEL 547 (806)
T ss_dssp CCCSSC--SSSCCCCHHHHH-HTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC-CCCSSS
T ss_pred cccccc--ccccchhhhhhH-HHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE-EechHh
Confidence 445555 699999999988 8888899999999989999999999999999999999999999999988766 788999
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEKRV 117 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~~~ 117 (121)
.+.|+++.+..++.+|+.|+...+.+
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~v 573 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCV 573 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999887643
No 22
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.62 E-value=4.6e-16 Score=110.47 Aligned_cols=99 Identities=33% Similarity=0.540 Sum_probs=81.7
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
++..|+ +++|.+.+++.+ .+.+..+..+++++..++ .++.+++|+||||||||++|+++|+.++.+++. +++.++
T Consensus 16 ~~~~~~--~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~l 90 (297)
T 3b9p_A 16 AKVEWT--DIAGQDVAKQAL-QEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLN-ISAASL 90 (297)
T ss_dssp SCCCGG--GSCCCHHHHHHH-HHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE-EESTTT
T ss_pred CCCCHH--HhCChHHHHHHH-HHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE-eeHHHH
Confidence 455565 699999999988 777877777777776655 457789999999999999999999999877555 678888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
...+.++.+..++.+|..++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~ 114 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQP 114 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCS
T ss_pred hhcccchHHHHHHHHHHHHHHcCC
Confidence 888899999999999999886543
No 23
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.60 E-value=8.8e-16 Score=107.00 Aligned_cols=98 Identities=28% Similarity=0.524 Sum_probs=77.7
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.|...|+ +++|+++.+.++ +... ..+..+..+..+++..+.|++|+||||||||++++++++.++..++. +++.+
T Consensus 10 ~~~~~~~--~i~g~~~~~~~l-~~l~-~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~-~~~~~ 84 (254)
T 1ixz_A 10 APKVTFK--DVAGAEEAKEEL-KEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSD 84 (254)
T ss_dssp CCSCCGG--GCCSCHHHHHHH-HHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHH
T ss_pred CCCCCHH--HhCCcHHHHHHH-HHHH-HHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE-eeHHH
Confidence 4555666 699999998887 4433 33456788999999999999999999999999999999999866443 55666
Q ss_pred cchhhhchhHHHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
+...+.++..+.++.+|+.++..
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~ 107 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRH 107 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhHHHHHHHHHHHHHHhc
Confidence 66667777888899999998643
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.60 E-value=3.7e-16 Score=118.88 Aligned_cols=99 Identities=27% Similarity=0.513 Sum_probs=81.6
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+...|+ +++|++.++.++ ++.+. .+..+..+.+++++.+.|++|+||||||||++++++|+.++.+++. +++.++
T Consensus 26 ~~~~f~--dv~G~~~~k~~l-~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~-i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFK--DVAGAEEAKEEL-KEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDF 100 (499)
T ss_dssp CCCCTT--SSCSCHHHHHHH-HHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE-EEGGGG
T ss_pred CCCCHH--HcCCcHHHHHHH-HHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-EehhHH
Confidence 455555 699999999988 54443 4567788889999999999999999999999999999999877655 678888
Q ss_pred chhhhchhHHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
...+.+.....++.+|+.|+...+
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~~~~p 124 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAKRHAP 124 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSSSSSS
T ss_pred HHhhhhhHHHHHHHHHHHHHhcCC
Confidence 888889999999999998865433
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=111.56 Aligned_cols=98 Identities=34% Similarity=0.563 Sum_probs=81.8
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+...|+ +|+|++.+++++ .+.+..++..++.+...+ .++.+++|+||||||||++|+++|..++.+++. ++..++
T Consensus 79 ~~~~~~--~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~-i~~~~l 153 (357)
T 3d8b_A 79 PPVNWE--DIAGVEFAKATI-KEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS-ISASSL 153 (357)
T ss_dssp CCCCGG--GSCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE-EEGGGG
T ss_pred CCCCHH--HhCChHHHHHHH-HHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE-EehHHh
Confidence 445555 699999999988 777877777777766654 567889999999999999999999999887655 778888
Q ss_pred chhhhchhHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
...+.++.+..++.+|..|+...
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~ 176 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQ 176 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTC
T ss_pred hccccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999988654
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.59 E-value=1.8e-16 Score=111.06 Aligned_cols=99 Identities=29% Similarity=0.517 Sum_probs=81.3
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
.+...|+ ++.|.+.+++++ .+.+. .+..++.+.+++...+.+++|+||||||||++|+++|..++.+++. ++...
T Consensus 5 ~~~~~~~--~i~G~~~~~~~l-~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-v~~~~ 79 (268)
T 2r62_A 5 KPNVRFK--DMAGNEEAKEEV-VEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS-MGGSS 79 (268)
T ss_dssp CCCCCST--TSSSCTTTHHHH-HHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC-CCSCT
T ss_pred CCCCCHH--HhCCcHHHHHHH-HHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-echHH
Confidence 3455565 599999999988 55554 3667889999999999999999999999999999999999988766 67777
Q ss_pred cchhhhchhHHHHHHHHHHHHHHH
Q psy3632 91 VLDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 91 ~~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
+...+.+..+..++.+|+.|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~a~~~~ 103 (268)
T 2r62_A 80 FIEMFVGLGASRVRDLFETAKKQA 103 (268)
T ss_dssp TTTSCSSSCSSSSSTTHHHHHHSC
T ss_pred HHHhhcchHHHHHHHHHHHHHhcC
Confidence 777777777777888999887643
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.58 E-value=3.5e-15 Score=105.42 Aligned_cols=98 Identities=28% Similarity=0.521 Sum_probs=77.4
Q ss_pred CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
+...|+ +++|++++++++ +... ..+..+..+..+++..+.|++|+|||||||||+++++++.+...++. +++.++
T Consensus 35 ~~~~~~--~i~g~~~~~~~l-~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~-~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFK--DVAGAEEAKEEL-KEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDF 109 (278)
T ss_dssp CCCCGG--GSSSCHHHHHHH-HHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHH
T ss_pred CCCCHH--HhCChHHHHHHH-HHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEE-ecHHHH
Confidence 455555 699999999888 4433 34456788899999999999999999999999999999999865443 556666
Q ss_pred chhhhchhHHHHHHHHHHHHHHH
Q psy3632 92 LDKYVGESEANVRRLFADAEEEE 114 (121)
Q Consensus 92 ~~~~~~~~~~~i~~~f~~a~~~~ 114 (121)
...+.++....++.+|+.++...
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHHHhhHHHHHHHHHHHHHHhcC
Confidence 66677777888999999987543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=111.00 Aligned_cols=98 Identities=35% Similarity=0.564 Sum_probs=75.8
Q ss_pred CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632 13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92 (121)
Q Consensus 13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~ 92 (121)
...|+ +|.|.+.+++.+ .+.+..+..+++++..++ .++.+++|+||||||||++|+++|..++.+++. +++.++.
T Consensus 111 ~~~~~--~iiG~~~~~~~l-~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~-v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFD--DIAGQDLAKQAL-QEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFN-ISAASLT 185 (389)
T ss_dssp CCCGG--GSCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE-ECSCCC-
T ss_pred CCChH--HhCCHHHHHHHH-HHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEE-eeHHHhh
Confidence 34455 699999999988 777777777777777666 456789999999999999999999999988655 7888999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHH
Q psy3632 93 DKYVGESEANVRRLFADAEEEEK 115 (121)
Q Consensus 93 ~~~~~~~~~~i~~~f~~a~~~~~ 115 (121)
..+.++.+..++.+|+.|+...+
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~ 208 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQP 208 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSS
T ss_pred ccccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987543
No 29
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.46 E-value=9.8e-14 Score=104.19 Aligned_cols=94 Identities=30% Similarity=0.384 Sum_probs=70.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG 97 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~ 97 (121)
+|.|+++.++.+ ...+..++..+.++..+... ++.+++|+||||||||++++++|+.++.+++. ++...+.+ .|+|
T Consensus 16 ~IvGqe~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~-v~~~~~~~~g~vG 93 (444)
T 1g41_A 16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG 93 (444)
T ss_dssp TCCSCHHHHHHH-HHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEGGGGC----CC
T ss_pred HhCCHHHHHHHH-HHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCcee-ecchhhcccceee
Confidence 589999999887 66665554444444433332 46789999999999999999999999998665 66667776 5888
Q ss_pred h-hHHHHHHHHHHHHHHHH
Q psy3632 98 E-SEANVRRLFADAEEEEK 115 (121)
Q Consensus 98 ~-~~~~i~~~f~~a~~~~~ 115 (121)
+ .+..++.+|+.|+...+
T Consensus 94 ~d~e~~lr~lf~~a~~~~~ 112 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKLVR 112 (444)
T ss_dssp CCTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcch
Confidence 5 79999999999976643
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.44 E-value=2.3e-13 Score=102.31 Aligned_cols=87 Identities=25% Similarity=0.273 Sum_probs=68.3
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc--CCCCeeecC
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN--AREPKIVNG 88 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~--~~~~~~~~~ 88 (121)
.|...|+ ++.|.+..++.+ ...+... ..+..++++++|+||||||||++|+++|+.++ .++.. +++
T Consensus 31 ~~~~~~~--~iiG~~~~~~~l-~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~-~~~ 98 (456)
T 2c9o_A 31 LAKQAAS--GLVGQENAREAC-GVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP-MVG 98 (456)
T ss_dssp CBCSEET--TEESCHHHHHHH-HHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE-EEG
T ss_pred Chhhchh--hccCHHHHHHHH-HHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE-EeH
Confidence 3444444 699999998877 4433211 23555678999999999999999999999998 55544 788
Q ss_pred cccchhhhchhHHHHHHHHHHH
Q psy3632 89 PQVLDKYVGESEANVRRLFADA 110 (121)
Q Consensus 89 ~~~~~~~~~~~~~~i~~~f~~a 110 (121)
+++.+.+.++++. ++++|+.|
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a 119 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRA 119 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHT
T ss_pred HHHHHHhhhhhHH-HHHHHHHH
Confidence 8999999999987 99999987
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.41 E-value=2e-13 Score=97.39 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=53.9
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
.+.+++.+++|+||||||||++|+++|+.++.+++. ++.+++.+.|.|+++..++++|+.|.+.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~-v~~~~l~~~~~g~~~~~i~~~f~~a~~~ 94 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAAEI 94 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE-EEHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE-EeHHHhhhccCchhHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999998765 7788889999999999999999999543
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.34 E-value=1.8e-12 Score=92.20 Aligned_cols=88 Identities=24% Similarity=0.368 Sum_probs=68.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCC---ccEEEEcCCCCcHHHHHHHHHHHhcC-------CCCeeecCc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHV---KGILLYGPPGTGKTLMARQIGQMLNA-------REPKIVNGP 89 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~---~~vll~Gp~G~GKT~l~~~la~~~~~-------~~~~~~~~~ 89 (121)
++.|++++++.+ .+.+.... .+..+.++|+... .+++|+||||||||++|+++|+.+.. ++ ..++..
T Consensus 32 ~i~G~~~~~~~l-~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRI-RETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL-VSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHH-HHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE-EEECGG
T ss_pred HccChHHHHHHH-HHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE-EEEcHH
Confidence 489999999988 55555443 3566666666553 35999999999999999999999844 32 336777
Q ss_pred ccchhhhchhHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADA 110 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a 110 (121)
++.+.+.+.....++.+|+.+
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~ 129 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA 129 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH
T ss_pred HhhhhcccccHHHHHHHHHhc
Confidence 888888999988899999876
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.13 E-value=1.3e-10 Score=81.54 Aligned_cols=89 Identities=21% Similarity=0.248 Sum_probs=56.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES 99 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 99 (121)
.+.|.+..+++++...-.. .+.+...+...+.+++|+||||||||++|+++|..++.+++.+.....+.....+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l----~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELL----VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHH----HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred CCCCccHHHHHHHHHHHHH----HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3667777766663321100 123333345667889999999999999999999999888665433333332222334
Q ss_pred HHHHHHHHHHHHH
Q psy3632 100 EANVRRLFADAEE 112 (121)
Q Consensus 100 ~~~i~~~f~~a~~ 112 (121)
...++.+|+.+..
T Consensus 110 ~~~~~~~~~~~~~ 122 (272)
T 1d2n_A 110 CQAMKKIFDDAYK 122 (272)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 4668888887754
No 34
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.12 E-value=4.4e-11 Score=87.27 Aligned_cols=89 Identities=24% Similarity=0.365 Sum_probs=58.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHH-hCC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQ-LGC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYV 96 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~-~~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~ 96 (121)
.|.|.+..++.+ ...+............ ... .++.+++|+||||||||++|+++|..++.+++. +++..+.. .|+
T Consensus 16 ~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~-~~~~~l~~~~~~ 93 (363)
T 3hws_A 16 YVIGQEQAKKVL-AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM-ADATTLTEAGYV 93 (363)
T ss_dssp HCCSCHHHHHHH-HHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHHTTCHHH
T ss_pred hccCHHHHHHHH-HHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE-echHHhcccccc
Confidence 378999988887 4444322111000000 011 246689999999999999999999999888665 55656553 477
Q ss_pred chh-HHHHHHHHHHH
Q psy3632 97 GES-EANVRRLFADA 110 (121)
Q Consensus 97 ~~~-~~~i~~~f~~a 110 (121)
|.. ...++.+|+.+
T Consensus 94 g~~~~~~~~~~~~~~ 108 (363)
T 3hws_A 94 GEDVENIIQKLLQKC 108 (363)
T ss_dssp HHHHTHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHh
Confidence 776 56677787765
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.96 E-value=4.3e-10 Score=79.52 Aligned_cols=88 Identities=31% Similarity=0.396 Sum_probs=55.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHh-CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQL-GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG 97 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~ 97 (121)
++.|.+.+++.+ ...+...+....+...+ .-..+.+++|+||||||||++|++++..++.+++. +++..+.. .+.+
T Consensus 16 ~i~G~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~-i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG 93 (310)
T ss_dssp TCCSCHHHHHHH-HHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGGSSCCSGG
T ss_pred hcCChHHHHHHH-HHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-EcchhcccCCccC
Confidence 488999988887 44443321111110000 01245689999999999999999999999877554 55555544 4554
Q ss_pred hh-HHHHHHHHHH
Q psy3632 98 ES-EANVRRLFAD 109 (121)
Q Consensus 98 ~~-~~~i~~~f~~ 109 (121)
.. ...++.+|+.
T Consensus 94 ~~~~~~~~~~~~~ 106 (310)
T 1ofh_A 94 KEVDSIIRDLTDS 106 (310)
T ss_dssp GSTTHHHHHHHHT
T ss_pred ccHHHHHHHHHHH
Confidence 33 3456666653
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.93 E-value=4.1e-09 Score=76.38 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=41.6
Q ss_pred CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|...|+ ++.|.+..++.+ .... +... .+..++.+++|+||||||||++|+++|..++..
T Consensus 38 ~p~~~~~--~ivG~~~~~~~l-~~l~-------~~~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 38 EPRQASQ--GMVGQLAARRAA-GVVL-------EMIR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp CBCSEET--TEESCHHHHHHH-HHHH-------HHHH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred CcCcchh--hccChHHHHHHH-HHHH-------HHHH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3444455 589999887765 2221 1111 133445789999999999999999999999753
No 37
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.91 E-value=2.2e-09 Score=78.49 Aligned_cols=87 Identities=26% Similarity=0.342 Sum_probs=50.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHH------------------HHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEV------------------VEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~------------------~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|++.+++.+ ...+...+..... ... ...++.+++|+||||||||++|+++|..++.+
T Consensus 22 ~viGq~~ak~~l-~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 22 YVIGQEQAKKVF-SVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp TCCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HccCcHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 478999988887 4444222111111 001 12345679999999999999999999999877
Q ss_pred CCeeecCcccc-hhhhchh-HHHHHHHHHH
Q psy3632 82 EPKIVNGPQVL-DKYVGES-EANVRRLFAD 109 (121)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~~-~~~i~~~f~~ 109 (121)
++. ++...+. ..+.|+. +..+..+|+.
T Consensus 100 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~ 128 (376)
T 1um8_A 100 IAI-SDATSLTEAGYVGEDVENILTRLLQA 128 (376)
T ss_dssp EEE-EEGGGCC--------CTHHHHHHHHH
T ss_pred EEE-ecchhhhhcCcCCccHHHHHHHHHhh
Confidence 654 4444443 3455543 3445555543
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.91 E-value=5.9e-09 Score=68.17 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=51.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC---------CCCeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA---------REPKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---------~~~~~~~~~~ 90 (121)
++.|.+++++++ ...+. ...+.+++|+||+|+|||+++++++..+.. ..+..++...
T Consensus 23 ~~~g~~~~~~~l-~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 23 PVIGRDEEIRRT-IQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp CCCSCHHHHHHH-HHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred ccccchHHHHHH-HHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 588999888877 32221 133567999999999999999999998732 1111233333
Q ss_pred cc--hhhhchhHHHHHHHHHHHHH
Q psy3632 91 VL--DKYVGESEANVRRLFADAEE 112 (121)
Q Consensus 91 ~~--~~~~~~~~~~i~~~f~~a~~ 112 (121)
+. ..+.+.....++.+|+.+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~ 112 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAK 112 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HhccCCccccHHHHHHHHHHHHhh
Confidence 33 23455666777788876543
No 39
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.89 E-value=7.5e-10 Score=85.01 Aligned_cols=82 Identities=29% Similarity=0.344 Sum_probs=48.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc------
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL------ 92 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~------ 92 (121)
++.|+++.++.+ .+.+. ...+... .+..++|+||||||||++++++|+.++.+++.+ +.....
T Consensus 82 di~G~~~vk~~i-~~~~~--------l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i-~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERI-LEYLA--------VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI-SLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHH-HHHHH--------HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE-CCCC--------
T ss_pred HhccHHHHHHHH-HHHHH--------HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE-Eecccchhhhhh
Confidence 578999888776 33322 1122222 355799999999999999999999998876664 222221
Q ss_pred ---hhhhchhHHHHHHHHHHHH
Q psy3632 93 ---DKYVGESEANVRRLFADAE 111 (121)
Q Consensus 93 ---~~~~~~~~~~i~~~f~~a~ 111 (121)
..|.|.....+...|..|.
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~ 173 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAG 173 (543)
T ss_dssp ------------CHHHHHHTTC
T ss_pred hHHHHHhccCchHHHHHHHHhh
Confidence 1455555556666666553
No 40
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.86 E-value=7.9e-10 Score=93.51 Aligned_cols=100 Identities=16% Similarity=0.175 Sum_probs=63.2
Q ss_pred CcccccccCCcHHHHHHHHHHHhhccCCC----------hHHHHH------hCCC----------CCcc--EEEEcCCCC
Q psy3632 14 FDFNKMGIGGLDKEFTAIFRRAFASRVFP----------PEVVEQ------LGCQ----------HVKG--ILLYGPPGT 65 (121)
Q Consensus 14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--vll~Gp~G~ 65 (121)
..|+ +++|++..+.+. .+.+.+++.. ++.++. .|+. +|+| ++++|||||
T Consensus 1017 ~~~~--~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1017 SSTG--SMSAIDENKQKA-LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ---------CTTHHHHHH-HHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred ceee--ecCCccHHHHHH-HHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 4555 699999988887 6666666622 334443 2222 3444 999999999
Q ss_pred cHHHHHHHHHHHhcCCC--CeeecCcc----c--------chhhhch----hHHHHHHHHHHHHHHHHh
Q psy3632 66 GKTLMARQIGQMLNARE--PKIVNGPQ----V--------LDKYVGE----SEANVRRLFADAEEEEKR 116 (121)
Q Consensus 66 GKT~l~~~la~~~~~~~--~~~~~~~~----~--------~~~~~~~----~~~~i~~~f~~a~~~~~~ 116 (121)
|||++|++++.+..... +..++... + +++|+++ .|+.++.+|..||+.++.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 99999999998764441 11122222 2 2567777 899999999999876653
No 41
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.83 E-value=1e-08 Score=67.02 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=50.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-------C--CeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-------E--PKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-------~--~~~~~~~~ 90 (121)
++.|.+..++.+ .+.+. -....+++|+||+|+|||+++++++..+... . +..++...
T Consensus 23 ~~~g~~~~~~~l-~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (187)
T 2p65_A 23 PVIGRDTEIRRA-IQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS 88 (187)
T ss_dssp CCCSCHHHHHHH-HHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred hhhcchHHHHHH-HHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence 588888888777 32221 1335679999999999999999999987331 1 11122222
Q ss_pred cc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 91 VL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 91 ~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
+. ..+.+.....++.+++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (187)
T 2p65_A 89 LIAGAKYRGDFEERLKSILKEVQDA 113 (187)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCchhHHHHHHHHHHHHHHhc
Confidence 22 124455566677777776543
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.81 E-value=2.5e-09 Score=80.70 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=48.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc----------CCCCeeecCc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN----------AREPKIVNGP 89 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~----------~~~~~~~~~~ 89 (121)
++.|.++.++.+ ...+. -....+++|+||||||||++++++|..+. .+++. ++.+
T Consensus 181 ~iiGr~~~i~~l-~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-l~~~ 245 (468)
T 3pxg_A 181 PVIGRSKEIQRV-IEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDMG 245 (468)
T ss_dssp CCCCCHHHHHHH-HHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C---
T ss_pred CccCcHHHHHHH-HHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-eeCC
Confidence 488888888876 32221 13355799999999999999999999972 22222 2222
Q ss_pred ccchhhhchhHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
..+.|+.+..++.+|+.++..
T Consensus 246 ---~~~~g~~e~~~~~~~~~~~~~ 266 (468)
T 3pxg_A 246 ---TKYRGEFEDRLKKVMDEIRQA 266 (468)
T ss_dssp ----------CTTHHHHHHHHHTC
T ss_pred ---ccccchHHHHHHHHHHHHHhc
Confidence 566777777889999988753
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=3.4e-09 Score=80.74 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=48.0
Q ss_pred ccCCcHHHHHHHHHHHhhccC-CChHHHHHhCCC---CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 20 GIGGLDKEFTAIFRRAFASRV-FPPEVVEQLGCQ---HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~-~~~~~~~~~~~~---~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
++.|.+..++++ ...+.... ..+..+...+.. .+++++|+||||||||++|+++|+.++..++. +++++...
T Consensus 40 dliG~~~~~~~L-~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~-in~s~~~~ 115 (516)
T 1sxj_A 40 QVCGNKGSVMKL-KNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE-QNASDVRS 115 (516)
T ss_dssp GCCSCHHHHHHH-HHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE-ECTTSCCC
T ss_pred HhcCCHHHHHHH-HHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE-EeCCCcch
Confidence 599999998887 55543311 111122222222 45689999999999999999999999776544 45555443
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.77 E-value=3.6e-09 Score=83.82 Aligned_cols=76 Identities=24% Similarity=0.395 Sum_probs=48.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGP 89 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~ 89 (121)
++.|.++.++.+ ...+ ......+++|+||||||||++|+++|..+ +..++. ++.
T Consensus 181 ~iiG~~~~i~~l-~~~l-------------~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~-~~~- 244 (758)
T 3pxi_A 181 PVIGRSKEIQRV-IEVL-------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDM- 244 (758)
T ss_dssp CCCCCHHHHHHH-HHHH-------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C---
T ss_pred CccCchHHHHHH-HHHH-------------hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE-ecc-
Confidence 588898888877 3222 11345679999999999999999999997 222111 111
Q ss_pred ccchhhhchhHHHHHHHHHHHHHH
Q psy3632 90 QVLDKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~i~~~f~~a~~~ 113 (121)
...|.|+.+..++.+|+.+...
T Consensus 245 --g~~~~G~~e~~l~~~~~~~~~~ 266 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVMDEIRQA 266 (758)
T ss_dssp ----------CTTHHHHHHHHHTC
T ss_pred --cccccchHHHHHHHHHHHHHhc
Confidence 3457788888899999988753
No 45
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.68 E-value=4.6e-08 Score=64.42 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+++....+.+++|+||||||||++++++++.+.
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555577899999999999999999999884
No 46
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.67 E-value=5.2e-09 Score=66.99 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=37.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
++.|.+..++++ .+.+... .....+++|+||||||||++|++++.... +++. +++..
T Consensus 5 ~~iG~s~~~~~l-~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~-~~~~~ 61 (143)
T 3co5_A 5 DKLGNSAAIQEM-NREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVS-PARVE 61 (143)
T ss_dssp ---CCCHHHHHH-HHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC-CSSTT
T ss_pred CceeCCHHHHHH-HHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEE-echhh
Confidence 477888888887 4433211 12345799999999999999999998876 4332 44444
No 47
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.67 E-value=6.1e-08 Score=72.89 Aligned_cols=73 Identities=29% Similarity=0.500 Sum_probs=50.3
Q ss_pred ccCCcHHHH---HHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhh
Q psy3632 20 GIGGLDKEF---TAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYV 96 (121)
Q Consensus 20 ~i~Gl~~~~---~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~ 96 (121)
++.|.++.+ +.+ +..+... ...+++|+||||||||++++++++.++.++..+ +. .
T Consensus 27 ~ivGq~~~~~~~~~L-~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l-~a-------~ 84 (447)
T 3pvs_A 27 QYIGQQHLLAAGKPL-PRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERI-SA-------V 84 (447)
T ss_dssp TCCSCHHHHSTTSHH-HHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE-ET-------T
T ss_pred HhCCcHHHHhchHHH-HHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE-Ee-------c
Confidence 588998877 333 3333211 124799999999999999999999998776553 22 1
Q ss_pred chhHHHHHHHHHHHHHHH
Q psy3632 97 GESEANVRRLFADAEEEE 114 (121)
Q Consensus 97 ~~~~~~i~~~f~~a~~~~ 114 (121)
......++.+|+.|....
T Consensus 85 ~~~~~~ir~~~~~a~~~~ 102 (447)
T 3pvs_A 85 TSGVKEIREAIERARQNR 102 (447)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhh
Confidence 123445788888877654
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=2.6e-08 Score=66.84 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+.....++|+|||||||||+++.+|..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 33455799999999999999999999998764
No 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.66 E-value=5.6e-08 Score=69.79 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=41.8
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
++.|.+..++++ ...+.... . .-.+..+++|+||||||||++|++++..++.++..
T Consensus 30 ~iiG~~~~~~~l-~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 30 GYIGQESIKKNL-NVFIAAAK-------K-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp GCCSCHHHHHHH-HHHHHHHH-------H-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HhCChHHHHHHH-HHHHHHHH-------h-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 599999988887 44432211 0 11345679999999999999999999999877544
No 50
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.65 E-value=5e-08 Score=78.28 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=50.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGP 89 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~ 89 (121)
++.|.++.++.+ ...+ .-....+++|+||||||||++++++|..+ +..++ .++.+
T Consensus 171 ~viGr~~~i~~l-~~~l-------------~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~-~l~~~ 235 (854)
T 1qvr_A 171 PVIGRDEEIRRV-IQIL-------------LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV-SLQMG 235 (854)
T ss_dssp CCCSCHHHHHHH-HHHH-------------HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE-EECC-
T ss_pred ccCCcHHHHHHH-HHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE-EeehH
Confidence 477888777766 2222 11335679999999999999999999987 33322 24555
Q ss_pred ccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632 90 QVL--DKYVGESEANVRRLFADAEEE 113 (121)
Q Consensus 90 ~~~--~~~~~~~~~~i~~~f~~a~~~ 113 (121)
.+. ..+.|+.+..++.+|+.+...
T Consensus 236 ~l~~g~~~~g~~~~~l~~~~~~~~~~ 261 (854)
T 1qvr_A 236 SLLAGAKYRGEFEERLKAVIQEVVQS 261 (854)
T ss_dssp ----------CHHHHHHHHHHHHHTT
T ss_pred HhhccCccchHHHHHHHHHHHHHHhc
Confidence 555 457788888999999988753
No 51
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.64 E-value=4.7e-08 Score=62.59 Aligned_cols=47 Identities=30% Similarity=0.429 Sum_probs=33.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|-+..++++ .+.+.. +. .....++|+||||||||++|++++...
T Consensus 2 ~iiG~s~~~~~~-~~~~~~----------~a-~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQY-RRRLQQ----------LS-ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHH-HHHHHH----------HT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHH-HHHHHH----------Hh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 366777777777 332221 11 234569999999999999999999976
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.57 E-value=1.7e-07 Score=74.22 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=52.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC---------CeeecCcc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE---------PKIVNGPQ 90 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~---------~~~~~~~~ 90 (121)
++.|.+..++.+ .+. +......+++|+||||||||+++++++..+.... +..++...
T Consensus 187 ~~iGr~~~i~~l-~~~-------------l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~ 252 (758)
T 1r6b_X 187 PLIGREKELERA-IQV-------------LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_dssp CCCSCHHHHHHH-HHH-------------HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred CccCCHHHHHHH-HHH-------------HhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH
Confidence 467777776665 222 2223466899999999999999999999873210 11123333
Q ss_pred cc--hhhhchhHHHHHHHHHHHHH
Q psy3632 91 VL--DKYVGESEANVRRLFADAEE 112 (121)
Q Consensus 91 ~~--~~~~~~~~~~i~~~f~~a~~ 112 (121)
+. ..+.|+.+..++.+|+.++.
T Consensus 253 l~~~~~~~g~~e~~l~~~~~~~~~ 276 (758)
T 1r6b_X 253 LLAGTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_dssp --CCCCCSSCHHHHHHHHHHHHSS
T ss_pred HhccccccchHHHHHHHHHHHHHh
Confidence 33 35677888899999988764
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.56 E-value=2e-07 Score=66.69 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...+++|+||||||||++++++++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34679999999999999999999988
No 54
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.52 E-value=1.6e-07 Score=66.79 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=40.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
++.|.+..++++ ...+... ...+ ..+.+++|+||+|||||++|++++..++.++.
T Consensus 13 ~~ig~~~~~~~l-~~~l~~~-------~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 13 EYIGQERLKQKL-RVYLEAA-------KARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp TCCSCHHHHHHH-HHHHHHH-------HHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred HhhCHHHHHHHH-HHHHHHH-------HccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 599999988877 4433211 1111 24567999999999999999999999887644
No 55
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.51 E-value=1.2e-07 Score=62.46 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=29.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY 95 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~ 95 (121)
...++|+||+||||||+++.+|..++..+ ++...++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~---i~~d~~~~~~ 43 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL---YDSDKEIEKR 43 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCE---EEHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCE---EEChHHHHHH
Confidence 44689999999999999999999998764 3344444433
No 56
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.48 E-value=6.5e-08 Score=69.37 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+++|+||||||||++++++|..++.++..
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~ 76 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR 76 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 3579999999999999999999998776443
No 57
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.5e-07 Score=67.92 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=25.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
-..+.+++|+||||||||++++.++.++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34677899999999999999999999984
No 58
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.46 E-value=1.7e-07 Score=67.32 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=37.7
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..++.+|+ ++.|.+..++.+ ...... ....+++|+||||||||++|++++..++
T Consensus 17 ~~~~~~f~--~i~G~~~~~~~l-~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 17 TRPVFPFS--AIVGQEDMKLAL-LLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp -CCCCCGG--GSCSCHHHHHHH-HHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCch--hccChHHHHHHH-HHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556666 599999866544 221111 1234699999999999999999999886
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.45 E-value=5.8e-07 Score=64.15 Aligned_cols=52 Identities=21% Similarity=0.084 Sum_probs=39.3
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
++.|.++.++.+ +..+.. -..+..++++||||||||++++++|+.++.++..
T Consensus 27 ~ivg~~~~~~~l-~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 27 ECILPAFDKETF-KSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp TSCCCHHHHHHH-HHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred HHhCcHHHHHHH-HHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 588999988877 544431 1234557888999999999999999999776544
No 60
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.44 E-value=5.3e-07 Score=60.00 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=34.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+..++.+ ...+.. ....+++|+||+|+|||+++++++..+
T Consensus 18 ~~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 18 EVVGQDEVIQRL-KGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GCCSCHHHHHHH-HHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 588999888877 444321 122349999999999999999999976
No 61
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.43 E-value=1.1e-07 Score=65.79 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
+.....+.|.||+||||||+++++++.+.+..+.+...+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 66 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN 66 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence 444555889999999999999999999988777764333
No 62
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.42 E-value=3.8e-07 Score=59.32 Aligned_cols=27 Identities=44% Similarity=0.789 Sum_probs=24.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..++|+|||||||||+++.+|+.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999998753
No 63
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.41 E-value=3.7e-07 Score=59.60 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=28.9
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.+...+.|.||+|+||||+++++++.+ +..+.+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 444555568899999999999999999998 555554
No 64
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.37 E-value=2.8e-07 Score=66.55 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=35.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++.|.+..++.+ ...+... ..-+ .++..++|+||||+||||+++++|+.++..
T Consensus 26 ~~~g~~~~~~~l-~~~i~~~-------~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 26 EFIGQENVKKKL-SLALEAA-------KMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp GCCSCHHHHHHH-HHHHHHH-------HHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred HccCcHHHHHHH-HHHHHHH-------HhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 366777766665 3333211 0001 234679999999999999999999998654
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.36 E-value=5.8e-07 Score=63.53 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=37.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|.+..++.+ ...+.... ..+. -.+...++|+||||||||++|+++++.+...
T Consensus 18 ~i~G~~~~~~~l-~~~i~~~~------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAV-ADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHH-HHHHHHHH------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHH-HHHHHHHh------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 477888888877 43332210 0000 1223469999999999999999999998543
No 66
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.36 E-value=1.1e-06 Score=59.11 Aligned_cols=49 Identities=29% Similarity=0.451 Sum_probs=36.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++.|.+..++.+ ...+.. + ..+..++|+||+|+|||++++.+++.+...
T Consensus 24 ~~~g~~~~~~~l-~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 24 DVVGQEHVLTAL-ANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp GCCSCHHHHHHH-HHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred HHhCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 588999888877 433321 1 223468999999999999999999988653
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=5.6e-07 Score=64.53 Aligned_cols=46 Identities=30% Similarity=0.572 Sum_probs=34.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.++.++.+ ...+.. ....+++|+||||+|||++++++++.+.
T Consensus 38 ~i~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 38 EVTAQDHAVTVL-KKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TCCSCCTTHHHH-HHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHH-HHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588888887776 433321 1123499999999999999999999864
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.35 E-value=5.2e-07 Score=62.73 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=33.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++++ .+.+... . ..+.+++|+||||||||++|++++....
T Consensus 7 ~~ig~~~~~~~~-~~~~~~~----------~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 7 NLLGEANSFLEV-LEQVSHL----------A-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ---CCCHHHHHH-HHHHHHH----------T-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cceeCCHHHHHH-HHHHHHH----------h-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 478888888877 3322211 1 2345799999999999999999999875
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.34 E-value=1.5e-06 Score=58.75 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
...+++|+||||||||+++++++..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999998753
No 70
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.34 E-value=6.8e-07 Score=64.54 Aligned_cols=49 Identities=29% Similarity=0.391 Sum_probs=37.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+++++++ ...+...+ .-..+.+++|+||||||||++++++++.+
T Consensus 20 ~~~gr~~~~~~l-~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 20 VLPHREAELRRL-AEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCTTCHHHHHHH-HHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 689999998887 43332211 12345689999999999999999999988
No 71
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.33 E-value=2.5e-07 Score=61.17 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=24.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+..+..++|.|||||||||+++++++.++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~ 35 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGV 35 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCC
Confidence 344556889999999999999999998543
No 72
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.32 E-value=2.6e-07 Score=65.05 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=31.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
+..+.-+.|.||+|+||||+++++++.+.+..+.+...+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 344455889999999999999999999988777764333
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.32 E-value=1.8e-06 Score=62.49 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=41.0
Q ss_pred cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+...++ ++.|-+++++++ ...+.... . + ..+. .++|+||+|+|||++++++++.+...
T Consensus 10 l~~~~~p~--~l~gr~~~~~~l-~~~l~~~~------~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 10 FSPSYVPK--RLPHREQQLQQL-DILLGNWL------R--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp GSTTCCCS--CCTTCHHHHHHH-HHHHHHHH------H--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred cCCccCCC--CCCChHHHHHHH-HHHHHHHH------c--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 33444333 599999988887 43332111 0 1 2233 79999999999999999999998543
No 74
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.31 E-value=4.1e-07 Score=60.06 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=25.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+..++|.|+|||||||+++.++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 345568999999999999999999998755
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.31 E-value=4.7e-07 Score=70.21 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=35.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
++.|.+..++.+ ...+ .....++|+|||||||||+++++++.+....
T Consensus 42 ~i~G~~~~l~~l-~~~i---------------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 42 QVIGQEHAVEVI-KTAA---------------NQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HCCSCHHHHHHH-HHHH---------------HTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred eEECchhhHhhc-cccc---------------cCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 477888777666 3222 2235799999999999999999999986653
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.31 E-value=6.5e-07 Score=70.94 Aligned_cols=66 Identities=21% Similarity=0.397 Sum_probs=41.6
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC----CCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCeeecCcccc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ----HVKGILLYGPPGTGKTLMARQIGQMLN---AREPKIVNGPQVL 92 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~----~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~~~~~~~~ 92 (121)
.+.|.+..++.+ .+.+.... .+.. +..+++|+||||||||++|+++|..+. .+++. ++.+.+.
T Consensus 492 ~viGq~~a~~~l-~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~-i~~s~~~ 561 (758)
T 3pxi_A 492 RVIGQDEAVVAV-AKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR-IDMSEYM 561 (758)
T ss_dssp TSCSCHHHHHHH-HHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE-EEGGGGC
T ss_pred cCcChHHHHHHH-HHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEE-Eechhcc
Confidence 467888877776 33332211 1111 223699999999999999999999973 33332 5555555
Q ss_pred hhh
Q psy3632 93 DKY 95 (121)
Q Consensus 93 ~~~ 95 (121)
..+
T Consensus 562 ~~~ 564 (758)
T 3pxi_A 562 EKH 564 (758)
T ss_dssp SSC
T ss_pred ccc
Confidence 433
No 77
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.31 E-value=4.1e-07 Score=59.45 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=25.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
..++++|+||+||||+++.++..++.+++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 45889999999999999999999876543
No 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.5e-06 Score=61.47 Aligned_cols=46 Identities=28% Similarity=0.480 Sum_probs=35.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++.|.+..++.+ ...+.. + ...+++|+||+|+|||++++++++.+.
T Consensus 26 ~~~g~~~~~~~l-~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 26 DIVGQEHIVKRL-KHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp TCCSCHHHHHHH-HHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHH-HHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 589999988877 443321 1 122499999999999999999999864
No 79
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.30 E-value=3.6e-07 Score=62.30 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=25.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++...+++++||||||||++|.++|+.+..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333457999999999999999999999853
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.6e-06 Score=62.49 Aligned_cols=47 Identities=30% Similarity=0.560 Sum_probs=34.4
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+.+++.+ ...+.. + ..+ +++|+||||||||++++++|+.+..
T Consensus 26 ~~~g~~~~~~~L-~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 26 EVYGQNEVITTV-RKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp GCCSCHHHHHHH-HHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHH-HHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 477888877776 443321 1 112 3999999999999999999998743
No 81
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.29 E-value=2.4e-07 Score=63.56 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+..+..+.|.||+|||||||++++++.+.+..+.+.
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~ 62 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 344455889999999999999999999887766653
No 82
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.29 E-value=3.6e-07 Score=63.86 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
...++|+|++||||||+++.+|+.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~ 76 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF 76 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 45699999999999999999999998653
No 83
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.28 E-value=6.9e-07 Score=59.61 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=24.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+++|+||+|||||+++++++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999988543
No 84
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.28 E-value=1.3e-06 Score=63.29 Aligned_cols=49 Identities=22% Similarity=0.143 Sum_probs=37.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+++++++ ...+.... .-..+.+++|+||||+|||++++++++.+
T Consensus 21 ~l~gr~~~~~~l-~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 21 EIPFREDILRDA-AIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SCTTCHHHHHHH-HHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 689999998887 43332211 11345679999999999999999999987
No 85
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=1.7e-06 Score=64.83 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=23.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++|+||||+|||++++++++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999988
No 86
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.27 E-value=5e-07 Score=58.49 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=24.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.|+|.|+|||||||+++.++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~ 29 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPI 29 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence 478999999999999999999988653
No 87
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.26 E-value=1.4e-06 Score=68.98 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=28.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV 91 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~ 91 (121)
..+++|+||||||||++|+++|..++.+++. ++.+++
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~~~-i~~s~~ 524 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLR-FDMSEY 524 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTCEEEE-EEGGGC
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCEEE-Eechhh
Confidence 3469999999999999999999999766443 444443
No 88
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.26 E-value=4.8e-07 Score=66.48 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 46 VEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
++++.++. ..-+.|.||+||||||+++++++.+.+..+.+...+
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 44444443 445889999999999999999999988777764333
No 89
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.25 E-value=1.9e-06 Score=62.12 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=37.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+++++.+ ...+...+ .-..+..++|+||+|+|||++++++++.+
T Consensus 21 ~~~gr~~e~~~l-~~~l~~~~---------~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 21 ELPHREDQIRKI-ASILAPLY---------REEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCTTCHHHHHHH-HHSSGGGG---------GTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHHHHH---------cCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999988887 43332111 11345679999999999999999999987
No 90
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.25 E-value=1.5e-06 Score=61.71 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+..++|.|||||||||+++.++..++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~ 59 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQG 59 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 556889999999999999999998753
No 91
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.24 E-value=4.1e-07 Score=63.10 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=29.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 59 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 44455688999999999999999999987766665
No 92
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.24 E-value=2.6e-06 Score=61.45 Aligned_cols=48 Identities=29% Similarity=0.458 Sum_probs=36.7
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++.|.+..++.+ ...+.. + ..+..++|+||+|+|||++++++++.+..
T Consensus 17 ~~vg~~~~~~~L-~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 17 DVVGQEHVLTAL-ANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TSCSCHHHHHHH-HHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred hccCcHHHHHHH-HHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 589999988877 444321 1 22346899999999999999999998864
No 93
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.24 E-value=4.4e-07 Score=67.03 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=29.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.....+.|.||+||||||++++||+...+..+.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 61 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence 34445889999999999999999999887766653
No 94
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.24 E-value=3.4e-07 Score=67.09 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=29.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
....-+.|.||+||||||++++||+...+..+.+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 33445889999999999999999999887766653
No 95
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.23 E-value=2.4e-06 Score=60.30 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=34.2
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+..++.+ ...+.. ....+++|+||+|+|||++++++++.+
T Consensus 18 ~~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 18 EVVGQDEVIQRL-KGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GSCSCHHHHHHH-HTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHH-HHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 588999888876 333221 112249999999999999999999986
No 96
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.23 E-value=2.1e-06 Score=57.44 Aligned_cols=28 Identities=36% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+..+.|.||+||||||+++++++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455688999999999999999999986
No 97
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.22 E-value=9.4e-07 Score=62.01 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=31.1
Q ss_pred HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-CCee
Q psy3632 45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-EPKI 85 (121)
Q Consensus 45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-~~~~ 85 (121)
.++++.+.+...++++||+||||||+++++++.+... .+.+
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I 57 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 57 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence 3444445556668999999999999999999988654 4544
No 98
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=1.5e-06 Score=62.46 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=32.9
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+..++.+ +..+. . .+ ..+. ++|+||+|+||||+++++++.+
T Consensus 15 ~~vg~~~~~~~l-~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 15 ALSHNEELTNFL-KSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp GCCSCHHHHHHH-HTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HhcCCHHHHHHH-HHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 588999887766 33220 0 01 1233 9999999999999999999954
No 99
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.22 E-value=3.6e-07 Score=64.17 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+..+..+.|.||+|||||||++++++.+.+..+.+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~ 64 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 344445889999999999999999999887766653
No 100
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.22 E-value=2.9e-06 Score=60.59 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=40.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCeeecCccc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKIVNGPQV 91 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~~~~~~~ 91 (121)
++.|.+..++++ .+.+... . ....+++|+||||||||++|++++.... .+++. +++..+
T Consensus 3 ~iig~s~~~~~~-~~~~~~~----------a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~-v~~~~~ 64 (304)
T 1ojl_A 3 HMIGSSPAMQHL-LNEIAMV----------A-PSDATVLIHGDSGTGKELVARALHACSARSDRPLVT-LNCAAL 64 (304)
T ss_dssp CCCCCSHHHHHH-HHHHHHH----------C-STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE-EECSSC
T ss_pred CcEECCHHHHHH-HHHHHHH----------h-CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE-EeCCCC
Confidence 477888888877 3332211 1 3355799999999999999999999753 34444 444443
No 101
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.22 E-value=3.6e-07 Score=63.96 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=32.0
Q ss_pred HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.++. +..+.|.||+||||||+++++++.+.+..+.+.
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~ 65 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 65 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 344444444 445889999999999999999999887766653
No 102
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.22 E-value=4.9e-07 Score=62.75 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=29.6
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.. ..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 55 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEV 55 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 34556 6788999999999999999999987665554
No 103
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.21 E-value=5.5e-07 Score=68.63 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+++|+||||||||++|+++|..++.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 457999999999999999999998754
No 104
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.21 E-value=3.5e-07 Score=64.75 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 46 VEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 46 ~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
++++.+. .+.-+.|.||+||||||+++++++.+.+..+.+.
T Consensus 24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~ 66 (275)
T 3gfo_A 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66 (275)
T ss_dssp EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence 3444433 3445889999999999999999999887767663
No 105
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.20 E-value=4.7e-07 Score=63.86 Aligned_cols=42 Identities=26% Similarity=0.376 Sum_probs=32.1
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.....+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~ 77 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL 77 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 344444 344555889999999999999999999887766653
No 106
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.20 E-value=8.9e-07 Score=57.48 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=25.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
..++|.|++||||||+++.+|..++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~ 35 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEV 35 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3689999999999999999999998764
No 107
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.20 E-value=5.2e-07 Score=62.84 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+..+.-+.|.||+||||||+++++++.+.+..+.+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 344555889999999999999999999887766653
No 108
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.20 E-value=3.9e-07 Score=63.16 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+..+.-+.|.||+|+||||+++++++.+.+..+.+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 33444588999999999999999999987766665
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.20 E-value=7.2e-07 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.++|.|+|||||||+++.+|..++..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~ 32 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVF 32 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 488999999999999999999998653
No 110
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.20 E-value=1.1e-06 Score=58.54 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.-+.|.||+||||||+++++++.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345588999999999999999999863
No 111
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.19 E-value=4.4e-07 Score=63.85 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=31.5
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++.+ ..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 81 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 3444444 3444588999999999999999999987766665
No 112
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.19 E-value=1.2e-06 Score=58.55 Aligned_cols=28 Identities=21% Similarity=0.429 Sum_probs=24.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+..++|.||+||||||+++++++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3456889999999999999999999853
No 113
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.19 E-value=5.8e-07 Score=65.91 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+||||||++++||+...+..+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence 33445588999999999999999999987766665
No 114
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.19 E-value=6.1e-07 Score=65.85 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=28.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+||||||++++||+...+..+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE
Confidence 33444588999999999999999999987766665
No 115
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.18 E-value=6.2e-07 Score=62.57 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~ 87 (121)
+..+..+.|.||+|+|||||++++++.+.+. +.+..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 3445558899999999999999999998877 77643
No 116
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.18 E-value=4.9e-07 Score=61.80 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=28.9
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+....-+.|.||+|+||||+++++++.+.+..+.+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I 66 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence 34455588999999999999999999987766665
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.18 E-value=2.6e-06 Score=57.40 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=24.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+.-+.|.||+||||||++++|++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34556889999999999999999999873
No 118
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.18 E-value=1e-06 Score=57.79 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=25.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+..|+|+|+||+||||+++.++..++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 45699999999999999999999987653
No 119
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=1.2e-06 Score=58.13 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.++|+||+||||||+++++++.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999986
No 120
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.18 E-value=6.5e-07 Score=65.90 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=29.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.....+.|.||+||||||++++||+...+..+.+.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 69 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE
Confidence 334445889999999999999999999887766653
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=4.4e-06 Score=58.97 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=34.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++.|.+..++.+ ...+.. + ..+ +++|+||+|+|||++++++++.+
T Consensus 22 ~~~g~~~~~~~l-~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 22 DIVGNKETIDRL-QQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GCCSCTHHHHHH-HHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHH-HHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence 588999988877 444321 1 222 39999999999999999999986
No 122
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.17 E-value=5.6e-07 Score=65.86 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=28.7
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+||||||++++||+...+..+.+
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 72 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence 33445588999999999999999999987766665
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.17 E-value=2e-06 Score=59.70 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=25.5
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+..++|.|+|||||||+++.++..++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~ 59 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGN 59 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 345568999999999999999999998743
No 124
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.17 E-value=1.7e-06 Score=61.95 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
..+.-++++||+|+||||+++.+|+.+....+.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V 131 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 131 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3455688999999999999999999987665554
No 125
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.16 E-value=5.7e-07 Score=63.02 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34444588999999999999999999987766665
No 126
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.16 E-value=1.2e-06 Score=58.35 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+.-++|+||+||||||+++.+++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345568899999999999999999987
No 127
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.16 E-value=2e-06 Score=58.08 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=26.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++....-+.|+|||||||||+++.++.....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5666777999999999999999999986544
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.16 E-value=1.1e-06 Score=58.23 Aligned_cols=28 Identities=43% Similarity=0.495 Sum_probs=24.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH-hcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM-LNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~-~~~~ 81 (121)
+..++|+|++||||||+++.++.. ++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 446999999999999999999998 5644
No 129
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.15 E-value=1.3e-06 Score=59.45 Aligned_cols=28 Identities=18% Similarity=0.491 Sum_probs=23.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+..+.-+.|+||+|+||||+++++++.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3444558899999999999999999987
No 130
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.15 E-value=5.3e-07 Score=62.07 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=28.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+|+||||+++++++.+.+..+.+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 65 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence 34455588999999999999999999987765554
No 131
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.15 E-value=5.6e-07 Score=63.80 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=31.9
Q ss_pred HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++.+. ....+.|.||+|+|||||++++++.+.+..+.+.
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~ 79 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence 34444433 4445889999999999999999999887766653
No 132
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.15 E-value=5.5e-07 Score=65.76 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.....+.|.||+||||||++++||+...+..+.+.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 58 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Confidence 344455889999999999999999999887766653
No 133
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.15 E-value=6.5e-07 Score=65.89 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+||||||++++||+...+..+.+
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 33445588999999999999999999987776665
No 134
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.15 E-value=1.6e-06 Score=61.15 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++|+||||||||++++++|..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4579999999999999999999964
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.15 E-value=1.4e-06 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.|+|+|+|||||||+++.++..++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 489999999999999999999998663
No 136
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.14 E-value=4.1e-07 Score=62.98 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.....+.|.||+||||||+++++++.+.+..+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 344455688999999999999999999886654443
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.14 E-value=1.4e-06 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-++|+|++|+||||+++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 3468999999999999999999998754
No 138
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.14 E-value=5.9e-07 Score=64.52 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=29.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+...+.|+||+|+||||+++++++.+.+..+.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~ 112 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR 112 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE
Confidence 34455899999999999999999999887766653
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.14 E-value=3e-06 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|+|||||||+++.++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3458999999999999999999998744
No 140
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.14 E-value=6.6e-07 Score=62.92 Aligned_cols=35 Identities=14% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+..+..+.|.||+|+||||+++++++.+.+..+.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I 64 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV 64 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 34455588999999999999999999987766665
No 141
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.13 E-value=1.1e-06 Score=57.75 Aligned_cols=27 Identities=33% Similarity=0.714 Sum_probs=23.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..++|.|+|||||||+++.++..++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 458899999999999999999988744
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.12 E-value=1.7e-06 Score=58.17 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+..+.-+.|.||+||||||+++++++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 344555688999999999999999999874
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.12 E-value=1.2e-06 Score=56.45 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
....++|+||+|+|||++++++++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4557999999999999999999998843
No 144
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.11 E-value=1.9e-06 Score=57.85 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++..++|+||+|+||||+++.+++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345689999999999999999999874
No 145
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.11 E-value=2.2e-06 Score=55.88 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..++|+||||+||||+++.+++.++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 3458899999999999999999988643
No 146
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.11 E-value=3.1e-06 Score=60.60 Aligned_cols=26 Identities=35% Similarity=0.662 Sum_probs=24.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+++|+||||||||+++.++|..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999876
No 147
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.11 E-value=2.2e-06 Score=57.25 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|+|+|||||||+++.++..++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3458899999999999999999998765
No 148
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.11 E-value=2.4e-06 Score=62.63 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
..+.-++++||+|+||||+++.+|+.+....+.+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V 188 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV 188 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence 3455688999999999999999999987655554
No 149
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.10 E-value=5.4e-07 Score=65.91 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....+.|.||+||||||++++||+...+..+.+
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 62 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 34445588999999999999999999987766665
No 150
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.10 E-value=1.4e-06 Score=58.26 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|.||+||||||+++.+++ ++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~ 28 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVP 28 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 478999999999999999998 5544
No 151
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.10 E-value=2.4e-06 Score=57.06 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.++|++||||||+++.+++ ++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~ 27 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAY 27 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence 378999999999999999999 6543
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.09 E-value=1.9e-06 Score=60.01 Aligned_cols=26 Identities=46% Similarity=0.474 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-++++|||||||||+++.+|..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 37899999999999999999998765
No 153
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.09 E-value=7.3e-07 Score=62.32 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.6
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+..+.-+.|.||+|+||||+++++++.+.+..+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3444558899999999999999999998765444
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.09 E-value=2.5e-06 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.-++|+||+|+||||+++++++.+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34588999999999999999999764
No 155
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.09 E-value=2.7e-06 Score=58.67 Aligned_cols=28 Identities=29% Similarity=0.627 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..++|.|||||||||++++|+..++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4569999999999999999999887654
No 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.09 E-value=1.6e-06 Score=58.72 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+.|.||+||||||+++.+++.++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358899999999999999999988644
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.08 E-value=1.5e-06 Score=57.40 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|+|||||||+++.++..++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4468999999999999999999998754
No 158
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.08 E-value=2.8e-06 Score=61.01 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=28.5
Q ss_pred HHHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 44 EVVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 44 ~~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+++.+ .++++..+.|+||+|+|||||+++|++.+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345544 45556669999999999999999999998
No 159
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.08 E-value=1.4e-06 Score=59.56 Aligned_cols=26 Identities=42% Similarity=0.497 Sum_probs=23.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIG 75 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la 75 (121)
++..+.-++|.||||+||||++++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56667779999999999999999999
No 160
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.08 E-value=2.9e-06 Score=62.51 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=28.4
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++++.+..++++||||+||||+++++++.++..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 367777789999999999999999999987543
No 161
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.08 E-value=1.8e-06 Score=56.76 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=24.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..|+|.|+|||||||+++.++..++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 458899999999999999999988754
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.08 E-value=2.2e-06 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..++|.|+|||||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999887
No 163
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.07 E-value=2.7e-06 Score=58.69 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=23.4
Q ss_pred HHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 46 VEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
++++.+.. +.-+.|.||+||||||+++.+++.++.
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 44444444 344789999999999999999998764
No 164
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.07 E-value=2e-06 Score=58.24 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=24.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|+|||||||+++.+|..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 3468999999999999999999998754
No 165
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.07 E-value=2.1e-06 Score=58.17 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|||||||||+++.+|..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4469999999999999999999999854
No 166
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.07 E-value=2.2e-06 Score=57.68 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
|+|+|||||||||+++.++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999998765
No 167
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.07 E-value=2.5e-06 Score=56.52 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
-+.|.||+|+||||+++++++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999875
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.07 E-value=1.9e-06 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|+|+|++||||||+++.++..++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48999999999999999999998755
No 169
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.07 E-value=2.3e-06 Score=55.66 Aligned_cols=22 Identities=45% Similarity=0.576 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~ 76 (121)
..+++.|+|||||||+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999998
No 170
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.07 E-value=1.3e-06 Score=64.67 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=30.6
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. +.....+.|.||+||||||++++|++.+. ..+.+.
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~ 78 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ 78 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE
Confidence 344444 34455589999999999999999999876 556653
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.06 E-value=2.1e-06 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|+|+|||||||||+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999988754
No 172
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.06 E-value=2.4e-06 Score=58.55 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
..++-|+|.||||+||+|.|+.|+..++... ++.++++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h---IstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH---LSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE---ECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce---EcHHHHHH
Confidence 3455688899999999999999999997553 44444443
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.05 E-value=1.9e-06 Score=55.54 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=21.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-|+|+|||||||||+++.+ ..++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 4789999999999999999 776654
No 174
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.05 E-value=2.8e-06 Score=56.97 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.-+.|.||+||||||+++.+++.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999999887
No 175
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.05 E-value=2.4e-06 Score=56.15 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.|+|.|+|||||||+++.++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999998873
No 176
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.05 E-value=9.4e-07 Score=61.57 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.4
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHH--hcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQM--LNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~--~~~~~~~~ 85 (121)
+....-+.|.||+|+||||+++++++. +.+..+.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I 62 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI 62 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence 344555889999999999999999997 44433443
No 177
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.05 E-value=2.9e-06 Score=56.96 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|+|++||||||+++.++..++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 48899999999999999999987754
No 178
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.04 E-value=5.1e-06 Score=54.64 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy3632 57 ILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~ 78 (121)
++|.|++||||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988
No 179
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.04 E-value=7.7e-06 Score=59.24 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
|+.....++|+||||||||+++..+|...+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~ 150 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGK 150 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence 44555668999999999999999999875444
No 180
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.03 E-value=2.6e-06 Score=55.91 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|++||||||+++.++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3468899999999999999999988754
No 181
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.03 E-value=3.1e-06 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|+|.|++||||||+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999998865
No 182
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.03 E-value=1.6e-06 Score=60.78 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=29.9
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++. +..+..+.|.||+|+|||||++++++.+.. .+.+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I 76 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE
Confidence 344433 344555889999999999999999998764 4555
No 183
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.03 E-value=2.2e-06 Score=58.39 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|+|||||||+++.++..++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3468999999999999999999988754
No 184
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.03 E-value=1.7e-06 Score=56.60 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=20.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
..|+|+|+|||||||+++.++..++.++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~ 33 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSF 33 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 4588999999999999999999988663
No 185
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.03 E-value=2.4e-06 Score=57.98 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~ 93 (121)
++|.||||+||+|.|+.||..++... ++.++++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~---istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH---ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE---EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE---EcHHHHHH
Confidence 78899999999999999999997653 44455443
No 186
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.02 E-value=1.5e-06 Score=61.21 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=26.1
Q ss_pred HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+++++.+ ..+.-+.|.||+|+|||||++++++..
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444443 444558899999999999999999973
No 187
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.02 E-value=6e-06 Score=66.30 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=27.7
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh---cCCCCeeecCccc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML---NAREPKIVNGPQV 91 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~---~~~~~~~~~~~~~ 91 (121)
..++|+||||||||++|++++..+ +.+++. ++++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~-i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR-IDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEE-ECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEE-Eechhc
Confidence 479999999999999999999998 444333 444443
No 188
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.02 E-value=1.8e-06 Score=60.67 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=28.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+. ...+.+.||+|+||||+++++++.+ +..+.+.
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~ 61 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIF 61 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEE
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEE
Confidence 344 4558899999999999999999998 7766653
No 189
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.01 E-value=2.9e-06 Score=62.31 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=31.8
Q ss_pred HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-CCee
Q psy3632 45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-EPKI 85 (121)
Q Consensus 45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-~~~~ 85 (121)
.+.++.+.+...++++||+|+||||+++++++.+... .+.+
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I 168 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 168 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence 4555556666679999999999999999999988654 3443
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.01 E-value=3.3e-06 Score=58.37 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+..|+|+|||||||||+++.++..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45569999999999999999999988654
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.01 E-value=4e-06 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-++|+||+|+||||+++.++..+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 445889999999999999999998754
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.01 E-value=1.3e-05 Score=58.04 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
..+.-++|+||+|+||||+++.+|+.+....+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V 160 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV 160 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 3455688999999999999999999987665554
No 193
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.01 E-value=4.1e-06 Score=56.02 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
+.-|+|.|++||||||+++.++..++...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 445889999999999999999998876543
No 194
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.00 E-value=3.7e-06 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHH
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQ 73 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~ 73 (121)
+..+.-++++|||||||||++++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34455688999999999999994
No 195
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.00 E-value=2.9e-06 Score=57.45 Aligned_cols=27 Identities=26% Similarity=0.473 Sum_probs=24.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..|+|.|+|||||||+++.+|..++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 358899999999999999999999754
No 196
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.00 E-value=4.6e-06 Score=55.93 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=24.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+.-++|+||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455689999999999999999999874
No 197
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.00 E-value=3.8e-06 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-++|.||||+||||+++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999854
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.00 E-value=4.4e-06 Score=55.38 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=23.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|+|.|++||||||+++.++..++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 37899999999999999999998764
No 199
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.99 E-value=4.8e-06 Score=55.52 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.-|+|.|+|||||||+++.++..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358899999999999999999998764
No 200
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.99 E-value=1.3e-06 Score=62.28 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+++++.+. .+.-+.|.||+|+||||+++++++.+.+..+.+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 95 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence 44444444 344588999999999999999999886654544
No 201
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.99 E-value=2.5e-06 Score=64.97 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+..++|+||+|+||||+++.|++.+....+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V 324 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSV 324 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence 344588999999999999999999987655554
No 202
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.98 E-value=4.6e-06 Score=55.82 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=25.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+.-|+|.|++||||||+++.++..++...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4568999999999999999999988655433
No 203
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.98 E-value=4e-06 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..|+|.|+|||||||+++.||..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999998754
No 204
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.98 E-value=6.2e-06 Score=60.37 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=25.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
..++|+||+|+||||+++++|+.++.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3599999999999999999999987664
No 205
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.97 E-value=5.1e-06 Score=56.81 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+.-++|.||+|+|||||++++++...+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 44556889999999999999999998763
No 206
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.97 E-value=1.6e-06 Score=67.32 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+++|+||||||||++|+++|..++.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred CcceEEECCCchHHHHHHHHHHHhCCC
Confidence 347999999999999999999998753
No 207
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.96 E-value=4.3e-06 Score=56.42 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=23.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|+|.|+|||||||+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37899999999999999999988754
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.96 E-value=6.4e-06 Score=54.26 Aligned_cols=29 Identities=31% Similarity=0.522 Sum_probs=24.9
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+..++|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999998654
No 209
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.96 E-value=5.4e-06 Score=55.85 Aligned_cols=30 Identities=33% Similarity=0.298 Sum_probs=25.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++..+..++++||||+||||+++.++....
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456666789999999999999999997653
No 210
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.96 E-value=4.2e-06 Score=55.80 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|+|.|++||||||+++.++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~ 42 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFV 42 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 3458899999999999999999988753
No 211
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.95 E-value=2.5e-06 Score=58.23 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=17.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHH-HHh
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIG-QML 78 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la-~~~ 78 (121)
+..+.-+.|+||+||||||+++.++ +.+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445558899999999999999999 876
No 212
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=8.1e-06 Score=58.46 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=27.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+..++++||+||||||+++.+|+.+.+..+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V 133 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV 133 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 44588999999999999999999987765554
No 213
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.95 E-value=5.2e-06 Score=64.10 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=33.7
Q ss_pred HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+++++.+ +++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 34555444 44555899999999999999999999988777764
No 214
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.94 E-value=5.8e-06 Score=60.47 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=25.1
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+...++++||+||||||+++++++.+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 344468899999999999999999988654
No 215
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.94 E-value=2.1e-05 Score=54.75 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.-|+|+|+|||||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999984
No 216
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.94 E-value=7.4e-06 Score=56.88 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
...+.|.||+||||||+++.+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 345889999999999999999977664
No 217
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.93 E-value=7.6e-06 Score=55.28 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=24.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+....++-++|+||+|+||||++++|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3333455688999999999999999998865
No 218
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.93 E-value=4e-06 Score=61.29 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.+.....++++||+|+||||+++++++.+....+.+
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 3445666799999999999999999999987765554
No 219
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.92 E-value=2.8e-06 Score=57.73 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=26.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
....+.|.||+|||||||++++++. .+..+.+
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 3455889999999999999999998 6555553
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.91 E-value=1.8e-05 Score=54.29 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-++|.||+||||||+++.++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445889999999999999999999976
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.91 E-value=1.1e-05 Score=54.39 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=25.0
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...+..+++.|++|+||||+++.++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456688999999999999999999886
No 222
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.91 E-value=1e-05 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q psy3632 57 ILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|+|.|++||||||+++.++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 223
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.90 E-value=9e-06 Score=58.41 Aligned_cols=29 Identities=24% Similarity=0.181 Sum_probs=24.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..+.-+.|.||+||||||++++|++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34455889999999999999999999865
No 224
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.90 E-value=9.1e-06 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+..++|+|++||||||+++.++..+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458899999999999999999987
No 225
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.90 E-value=5.7e-06 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.++|.|+|||||||+++.++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37899999999999999999988743
No 226
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.89 E-value=1.6e-05 Score=59.32 Aligned_cols=32 Identities=38% Similarity=0.386 Sum_probs=26.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...++++||+|+||||+++++++.+....+.+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 34478999999999999999999997765544
No 227
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.89 E-value=4.9e-06 Score=64.23 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=32.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 444443 344555999999999999999999999987766653
No 228
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.89 E-value=7e-06 Score=57.82 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
.+++.||+|+||||++++|++...+..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G 31 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA 31 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4889999999999999999998865443
No 229
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.89 E-value=8.9e-06 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+..|+|.|++||||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999987
No 230
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.88 E-value=8.3e-06 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|.|++||||||+++.+|..++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 58899999999999999999998855
No 231
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.87 E-value=4.1e-06 Score=60.58 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
+.....++++||+|+||||+++++++.+.+..+.+
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i 202 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII 202 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence 34456799999999999999999999988766654
No 232
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.86 E-value=4.9e-06 Score=64.49 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP 89 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~ 89 (121)
.++++..+.++||+|+||||+++++++.+.+..+.+...+
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 3444556999999999999999999999988777764333
No 233
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.86 E-value=7.9e-06 Score=56.53 Aligned_cols=28 Identities=36% Similarity=0.588 Sum_probs=24.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..+.+.||+||||||+++.++..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3458899999999999999999998754
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.85 E-value=1.2e-05 Score=53.79 Aligned_cols=27 Identities=37% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
++....-++++||||+||||+++.++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 466667799999999999999999998
No 235
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.85 E-value=1.2e-05 Score=61.07 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
.+.. ..+.|.||+||||||+++++++.+.+..+.+.
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 61 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN 61 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 3455 57889999999999999999999988766653
No 236
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.84 E-value=1.4e-05 Score=59.96 Aligned_cols=41 Identities=15% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 44 EVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 44 ~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
..++.+ ++..+ .+.|.||+|||||||+++|++......+.+
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i 188 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV 188 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence 455555 55544 488999999999999999999988776554
No 237
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.84 E-value=1.4e-05 Score=53.56 Aligned_cols=29 Identities=28% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.-+.+.|++||||||+++.+++.+...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 34458899999999999999999987543
No 238
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.84 E-value=1.7e-05 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.-+.|.||+||||||+++++++.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999887
No 239
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.83 E-value=1.2e-05 Score=53.32 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..|.|+|++||||||+++.++.. +..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~ 34 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYP 34 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCE
Confidence 345889999999999999999997 433
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.83 E-value=1.3e-05 Score=53.61 Aligned_cols=24 Identities=38% Similarity=0.791 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.++||+|+||||+++.+++.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999885
No 241
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.83 E-value=3.9e-06 Score=64.81 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 344433 344555899999999999999999999988766663
No 242
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.83 E-value=4e-05 Score=55.82 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=36.0
Q ss_pred ccCCcHHHHHHHHHHHh-hccCCChHHHHHhCC-CCCccEEE--EcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAF-ASRVFPPEVVEQLGC-QHVKGILL--YGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i-~~~~~~~~~~~~~~~-~~~~~vll--~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.|-+++++++ ...+ ..... +. ..+..+++ +||+|+|||++++.+++.+.
T Consensus 23 ~l~gR~~el~~l-~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 23 ELRVRRGEAEAL-ARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCSSSCHHHHHH-HHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 588999988887 4333 21110 10 23456888 99999999999999998874
No 243
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.83 E-value=1.3e-05 Score=56.61 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+++.+..-++|.||||+||||+++.+|..+...
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 466667779999999999999999999987654
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=1.1e-05 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
+++...-++|+||||+|||++++.++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5666677999999999999999999985
No 245
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.82 E-value=5e-06 Score=64.37 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 444443 444556999999999999999999999887766653
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.81 E-value=1.1e-05 Score=54.08 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+.-+.++|++||||||+++.+++.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3457899999999999999999976
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.80 E-value=2e-05 Score=60.22 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=27.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+.++++.||+||||||+++++++.+......
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gi 290 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKV 290 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCE
Confidence 456679999999999999999999998765444
No 248
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.79 E-value=8.1e-06 Score=62.29 Aligned_cols=36 Identities=33% Similarity=0.527 Sum_probs=27.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHH--HHHHhcCCCCee
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQ--IGQMLNAREPKI 85 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~--la~~~~~~~~~~ 85 (121)
++.....++|.|||||||||+++. +++...+..+.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i 72 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV 72 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 445666799999999999999999 667765443443
No 249
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.78 E-value=1.6e-05 Score=57.90 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=25.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
...+.|+||+|||||||+++|++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 44589999999999999999999987765
No 250
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.78 E-value=6.8e-06 Score=63.60 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 344555999999999999999999999988777663
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.78 E-value=2.3e-05 Score=56.23 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=26.0
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
..+.-++++||+|+||||++..+|..+.....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 34556889999999999999999998865433
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.77 E-value=1.5e-05 Score=53.25 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
-|+|+||+|+||||+++.+.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 388999999999999999987754
No 253
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.76 E-value=1.9e-05 Score=56.83 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+..++|+||+|+|||++++++|+.+..
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 3456999999999999999999998754
No 254
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.76 E-value=1.7e-05 Score=54.82 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-|.|.|++||||||+++.++..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3458899999999999999999988754
No 255
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.75 E-value=1.5e-05 Score=53.74 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..|.|.|++||||||+++.++. ++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~ 30 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGIN 30 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence 4588999999999999999998 5543
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.75 E-value=9.8e-06 Score=57.66 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.-+.+.||+||||||+++.++..+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3455889999999999999999998864
No 257
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.75 E-value=1.7e-05 Score=60.83 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.2
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+.+...+.|+||+|||||||++++++.+.+..+.
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3445568999999999999999999988766555
No 258
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.75 E-value=5.5e-05 Score=65.49 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.5
Q ss_pred ChHHHHHhC---CCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 42 PPEVVEQLG---CQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 42 ~~~~~~~~~---~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.+..-++ ++.+.+++|+||||||||++|.+++......
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 355555566 8888899999999999999999998876544
No 259
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.75 E-value=6.1e-05 Score=53.58 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=34.5
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.|-+.+++.+ .. +.. ..++++||+|+|||++++.++......
T Consensus 14 ~~~gR~~el~~L-~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 14 DFFDREKEIEKL-KG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp GSCCCHHHHHHH-HH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred HhcChHHHHHHH-HH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 577888887776 32 321 369999999999999999999987654
No 260
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.72 E-value=1.8e-05 Score=59.73 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=26.6
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.+..+..++|.||+|||||||+|+|++.+..
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 44555667999999999999999999998743
No 261
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.71 E-value=3.1e-05 Score=50.60 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=22.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-.+|+||+||||||++++|+..++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 46789999999999999999887643
No 262
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.71 E-value=2.5e-05 Score=56.92 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 44 EVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 44 ~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...+.+ ++. +..+.|.||+|+||||+++.|++......+.+
T Consensus 60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i 102 (347)
T 2obl_A 60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL 102 (347)
T ss_dssp HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 344444 444 34488999999999999999999988765443
No 263
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.70 E-value=2.1e-05 Score=53.82 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+..+.|.|++||||||+++.++..++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 4458899999999999999999988744
No 264
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.70 E-value=2.1e-05 Score=55.10 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++....-++|+||||+||||+++.++..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 556666799999999999999999998664
No 265
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.70 E-value=3.8e-05 Score=55.65 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=28.9
Q ss_pred HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
+++.+.+. ....+.|.||||+||||+++++++.+....+.
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~ 85 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK 85 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence 44454433 34458899999999999999999887544333
No 266
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.69 E-value=3.1e-05 Score=55.93 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-+.|.||+||||||++++++..+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4889999999999999999999863
No 267
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.68 E-value=2.6e-05 Score=56.38 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=24.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..++++||+|||||++++.+|..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 468899999999999999999998744
No 268
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.68 E-value=1.5e-05 Score=61.27 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=28.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...-+.|.||+||||||++++|++.+.+..+.+
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 325 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEGSV 325 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 344588999999999999999999988776665
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.68 E-value=9.3e-06 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|+|.|++||||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999998864
No 270
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.65 E-value=1.8e-05 Score=60.73 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
.+..+.|.||+|||||||+++|++.+.+..+.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 34558899999999999999999988765444
No 271
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.65 E-value=2.7e-05 Score=60.64 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.-+.|.||+|+||||++++|++.+.+..+.+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 344588999999999999999999988877664
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=3.4e-05 Score=52.40 Aligned_cols=29 Identities=38% Similarity=0.477 Sum_probs=23.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|+..+.-+++.||||+|||+++..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56667779999999999999988776654
No 273
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.62 E-value=2.1e-05 Score=61.20 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=27.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
.+.-+.|.||+|+|||||+++|++.+.+..+.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 344588999999999999999999887655543
No 274
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.62 E-value=3.5e-05 Score=54.30 Aligned_cols=24 Identities=42% Similarity=0.468 Sum_probs=21.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.-+++.|+|||||||+++.++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999863
No 275
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.62 E-value=2.7e-05 Score=57.91 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-++++|+|||||||+++.++..++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 3448889999999999999999887643
No 276
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.62 E-value=2.6e-05 Score=59.85 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=26.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
-+.|.||+|+||||++++|++.+.+..+.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 488999999999999999999987776653
No 277
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.62 E-value=3.1e-05 Score=52.08 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=23.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+.|+|++||||||+++.++..++.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 358899999999999999999988754
No 278
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=5.5e-05 Score=54.10 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=22.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++|+||+|+|||++++++|+.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 3479999999999999999999864
No 279
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.60 E-value=0.00017 Score=51.15 Aligned_cols=44 Identities=18% Similarity=0.126 Sum_probs=34.0
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+.|-+..++.+ .+.+. . + ..++++||+|+|||++++.++...+
T Consensus 13 ~~~gR~~el~~L-~~~l~----------~-~----~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 13 DIFDREEESRKL-EESLE----------N-Y----PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GSCSCHHHHHHH-HHHHH----------H-C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred hcCChHHHHHHH-HHHHh----------c-C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 578888888877 33332 1 1 4699999999999999999998764
No 280
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.60 E-value=3.6e-05 Score=56.02 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=25.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+++...-+.|+||||+||||+++.++...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45556668899999999999999999987
No 281
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.59 E-value=1.6e-05 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+.++|++||||||+++.+++.+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 47899999999999999999998765
No 282
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.58 E-value=3.2e-05 Score=59.59 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
..+..+.|+|++||||||++++|++.+....+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 34556889999999999999999999976543
No 283
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.58 E-value=3.4e-05 Score=60.01 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=27.7
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+..+.|.||+|+||||+++++++.+.+..+.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 344558899999999999999999988776655
No 284
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.57 E-value=4e-05 Score=56.08 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=25.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|++...-++++||||+||||++..++..+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3566666889999999999999999987643
No 285
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.55 E-value=1.7e-05 Score=54.68 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
++|+||+||||||++++|+..+.+..+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~ 59 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLH 59 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence 567899999999999999999987766543
No 286
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.53 E-value=4.2e-05 Score=53.94 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=21.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.-|+|+|++||||||+++.++ .++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~ 101 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAY 101 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence 358899999999999999999 45543
No 287
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.51 E-value=5.2e-05 Score=56.50 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=24.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
.+.|.||+|+||||+++++++...+..+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~Gs 99 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGA 99 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCce
Confidence 58899999999999999999976555444
No 288
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.51 E-value=0.00012 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.-|+|.|++|+||||+++.++..+....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3478899999999999999999987543
No 289
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.50 E-value=6.5e-05 Score=51.86 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
.+.|.|||||||||+++.|+..++...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 478999999999999999999997653
No 290
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.49 E-value=4.3e-05 Score=54.41 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=24.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
..-+.+.||||+||||+++++++...+..+.+
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 34488999999999999999999876655443
No 291
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.49 E-value=8.9e-05 Score=53.15 Aligned_cols=23 Identities=39% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-++++|++|+||||+++.+++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999875
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.48 E-value=7.1e-05 Score=54.47 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.-+++.||+|+|||++++.||..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3588999999999999999999986
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.48 E-value=9.4e-05 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.-+++.|++|+||||+++.+...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4588999999999999999998764
No 294
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.47 E-value=0.00018 Score=56.23 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=24.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh---cCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML---NARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~---~~~~ 82 (121)
+..|+|+|.+||||||++++++..+ +.++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~ 83 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 83 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3458899999999999999999998 5553
No 295
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.47 E-value=6.4e-05 Score=50.59 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=24.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
-|.+.|++|||||++++.+|..++.++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~ 34 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPL 34 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence 488999999999999999999998774
No 296
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.47 E-value=4e-05 Score=64.11 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=32.8
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+||||||+++++++.+.+..+.+.
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~ 448 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 444443 444556999999999999999999999988767663
No 297
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.46 E-value=6.4e-05 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..+++|.||+|+|||+++..++....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45699999999999999999998754
No 298
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.46 E-value=6.8e-05 Score=56.10 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=23.2
Q ss_pred hCCCCCcc--EEEEcCCCCcHHHHHHHHHHH
Q psy3632 49 LGCQHVKG--ILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 49 ~~~~~~~~--vll~Gp~G~GKT~l~~~la~~ 77 (121)
+.+..+.. ++|+||+|+|||||+++|++.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34444555 889999999999999999986
No 299
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.45 E-value=4.5e-05 Score=63.96 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=33.0
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+||||||+++++.+.+.+..+.+.
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~ 476 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc
Confidence 344443 444556999999999999999999999988777763
No 300
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.43 E-value=3.9e-05 Score=64.34 Aligned_cols=42 Identities=19% Similarity=0.402 Sum_probs=33.5
Q ss_pred HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+++++. ++++..+.++||+||||||+++++.+.+.+..+.+.
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE
Confidence 444443 445556999999999999999999999988877763
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.43 E-value=6.9e-05 Score=54.50 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.-++|+||+|+|||+++..||..++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 35889999999999999999998863
No 302
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.42 E-value=8.5e-05 Score=54.11 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=24.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++...-++++||||+|||+++..++...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556669999999999999999988765
No 303
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.42 E-value=3.8e-05 Score=59.83 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAREP 83 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~~ 83 (121)
+.|.||+|+|||||+++|++.+.+..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 789999999999999999999876654
No 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.41 E-value=3.7e-05 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
-|.+.||+||||||+++.++..++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 488999999999999999999876
No 305
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.41 E-value=0.00011 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+..++++||+|+||||++..+|..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456889999999999999999998864
No 306
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=0.0001 Score=52.58 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=24.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI 85 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~ 85 (121)
...+.|.||||+||||++++++ ...+..+.+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i 195 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEV 195 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence 3458899999999999999999 776554443
No 307
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.40 E-value=0.00012 Score=52.69 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.3
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+..++++||+|+||||++..+|..+......
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k 135 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK 135 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 345568899999999999999999988654333
No 308
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.38 E-value=0.00024 Score=50.47 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=25.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
..+..++++|++|+||||++..+|..+......
T Consensus 96 ~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~ 128 (295)
T 1ls1_A 96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (295)
T ss_dssp CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 334557789999999999999999988654333
No 309
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=9.2e-05 Score=54.22 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=24.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc-CCCCe
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN-AREPK 84 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~-~~~~~ 84 (121)
..+.|.||||+|||||+++|++... ...+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~ 246 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTND 246 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCC
Confidence 3588999999999999999998876 54444
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.38 E-value=0.00011 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.+++.|++|+|||||++.+++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 488999999999999999998653
No 311
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.38 E-value=8.8e-05 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
|+....-++|+||||||||||++.++-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 566666699999999999999997653
No 312
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.37 E-value=0.00012 Score=52.65 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-++++||+|+|||+++..+|..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 345789999999999999999998764
No 313
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.36 E-value=0.00032 Score=52.42 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=26.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
.+..++++|++|+||||++..+|..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~ 128 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR 128 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 45568889999999999999999998655333
No 314
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.36 E-value=0.00012 Score=48.35 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+++.|++|+|||||++.+++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 315
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.36 E-value=2.8e-05 Score=63.43 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
..+..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus 697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 34445889999999999999999999877766653
No 316
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.35 E-value=0.00012 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-+++.||+|+|||+++..+|..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 4788999999999999999998753
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00014 Score=47.83 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.+.+.|++|+||||++..++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4789999999999999999988753
No 318
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.35 E-value=8e-05 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
+.-+.|.|++|+||||+++.+++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345889999999999999999987
No 319
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.33 E-value=7.3e-05 Score=62.55 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632 51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86 (121)
Q Consensus 51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~ 86 (121)
+.++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 344555999999999999999999999877766653
No 320
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.33 E-value=0.00014 Score=55.63 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+.-|+++|.||+||||+++.++..++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 34588999999999999999999986554
No 321
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.32 E-value=0.00033 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+++.|++|||||+++.+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999887543
No 322
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.31 E-value=0.0002 Score=51.90 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++...-++++||||+|||+++..+|...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56666668999999999999999999863
No 323
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.29 E-value=0.00015 Score=49.18 Aligned_cols=27 Identities=41% Similarity=0.458 Sum_probs=22.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
|+++..-+++.|+||+|||++|..+|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 567777799999999999999887654
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.28 E-value=0.00016 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++|.|+||+||||++..+...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 568999999999999999988874
No 325
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.28 E-value=5.9e-05 Score=50.06 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=24.2
Q ss_pred hCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 49 LGCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
+.+.....+++.|++|+|||||++++++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 555556669999999999999999988755
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.27 E-value=0.00016 Score=51.90 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++...-++++||||+|||+++..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 56666678999999999999999999865
No 327
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.00018 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++....++++|+||+|||++|..++...
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36667779999999999999999988765
No 328
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.27 E-value=0.00017 Score=55.16 Aligned_cols=26 Identities=8% Similarity=-0.000 Sum_probs=23.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..|.|.|.+||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45889999999999999999999985
No 329
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.27 E-value=0.00012 Score=49.77 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=22.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.|.|+|..||||||+++.++. ++.+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~ 35 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGAS 35 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 488999999999999999987 6654
No 330
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.26 E-value=0.00019 Score=53.44 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.-+++.||+|+|||+++..+|..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~ 28 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG 28 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC
Confidence 34789999999999999999998864
No 331
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.25 E-value=0.00018 Score=49.21 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=22.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..|++.|++|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999884
No 332
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.25 E-value=0.00021 Score=53.52 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=23.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-++++||+|+||||++..+|..+...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568889999999999999999887544
No 333
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.23 E-value=0.00019 Score=54.73 Aligned_cols=32 Identities=34% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++.....+++.||||+||||+++.++......
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 55666678999999999999999999987653
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.21 E-value=0.0003 Score=47.84 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.-|.|.|++|+||||.++.++..+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 347889999999999999999988654
No 335
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.20 E-value=0.00029 Score=48.65 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-|+|.|++|+||||+++.++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3458899999999999999999988654
No 336
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.20 E-value=0.00025 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-.+++||+|+|||+++.||.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998655
No 337
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.19 E-value=4.9e-05 Score=54.57 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
....+.|.||||+|||||+++|++.....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccccc
Confidence 34568899999999999999998876443
No 338
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.18 E-value=0.00022 Score=49.01 Aligned_cols=27 Identities=30% Similarity=0.217 Sum_probs=20.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-|+|.|++|+||||+++.++..+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344888999999999999999998854
No 339
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.00035 Score=50.00 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|+.+..-+++.|+||+|||+++..+|....
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577777799999999999999999887653
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.16 E-value=0.00021 Score=50.99 Aligned_cols=28 Identities=25% Similarity=0.189 Sum_probs=23.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
|++...-++++||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666899999999999999999875
No 341
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.14 E-value=0.00027 Score=53.14 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
+..|+++|.||+||||+++.++..++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 34588999999999999999999876443
No 342
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.14 E-value=0.0002 Score=49.01 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=23.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
-|.+.|++|||||++++.+|..++.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~ 41 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIH 41 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence 47889999999999999999999865
No 343
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.13 E-value=0.00018 Score=58.81 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=20.8
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
.+..+.|+||+|+|||||+++|++
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 344588999999999999999995
No 344
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.13 E-value=0.00032 Score=52.09 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+.-.+|+||+|+|||+++.+++..++..
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 334558899999999999999999987654
No 345
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.12 E-value=7.7e-05 Score=54.84 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=26.3
Q ss_pred HHHHhCCCCCc-cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 45 VVEQLGCQHVK-GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 45 ~~~~~~~~~~~-~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
.++.+.+.... -++|+||+|+||||++++|+..++
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 34444444433 577999999999999999988876
No 346
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.12 E-value=0.00013 Score=50.71 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.-|+|.|++|+||||+++.|+..+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34588999999999999999999874
No 347
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.11 E-value=0.00041 Score=51.99 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=25.8
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|+.++.-+++.|+||+|||+++..+|....
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567677799999999999999999988764
No 348
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.11 E-value=0.00027 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 349
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.09 E-value=0.00084 Score=59.73 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=30.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~ 90 (121)
..++++.||+|||||++++.+|+.++.+.+. +++.+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~-~nc~e 680 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVV-FNCDD 680 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEE-EETTS
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEE-EECCC
Confidence 4578999999999999999999999998655 44443
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.09 E-value=0.00023 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||+|++.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 351
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.09 E-value=0.00035 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
..|+|.|++||||||++++++..++
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999999987
No 352
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.09 E-value=0.00049 Score=46.93 Aligned_cols=27 Identities=33% Similarity=0.267 Sum_probs=24.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-|++.|++|+||||+++.++..+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 345889999999999999999999986
No 353
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.08 E-value=0.00037 Score=53.91 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
..+++.||||||||+++.+++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 458899999999999999999876543
No 354
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.08 E-value=0.00069 Score=50.93 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-++++|++|+||||++..+|..+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 4568899999999999999999877544
No 355
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.06 E-value=0.00035 Score=51.20 Aligned_cols=29 Identities=31% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++....++++||||+|||+++..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 46666678999999999999999888765
No 356
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.05 E-value=0.00018 Score=55.94 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.++||+|+||||++++|++...+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--
T ss_pred EEEECCCCChHHHHHHHHhCCCCC
Confidence 899999999999999999998644
No 357
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.03 E-value=0.00064 Score=45.50 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNARE 82 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~~ 82 (121)
|.|-|+-||||||.++.++..+....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 67889999999999999999886543
No 358
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.02 E-value=0.00039 Score=45.08 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999873
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.01 E-value=0.0005 Score=43.24 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 360
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.01 E-value=0.00053 Score=46.99 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+.-|.|.|++|+||||+++.++..+..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345788999999999999999998865
No 361
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.00 E-value=0.0005 Score=43.46 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||++++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 362
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.00 E-value=0.00055 Score=49.70 Aligned_cols=26 Identities=38% Similarity=0.680 Sum_probs=22.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...+.|+|+||+||||+.+++++.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 34588999999999999999998653
No 363
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.97 E-value=0.00053 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=18.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-++++|+||||||+.+..++..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999998776444
No 364
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00067 Score=44.19 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++++|++|+|||+++..+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4469999999999999999998753
No 365
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.96 E-value=0.0005 Score=53.62 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=17.2
Q ss_pred cEEEEcCCCCcHHHH-HHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLM-ARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l-~~~la~~~~ 79 (121)
-.+++||||||||+. +.+++..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 368899999999975 455554443
No 366
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.96 E-value=0.00054 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-.+|+||+|+||||+..+|+-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999998654
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.96 E-value=0.00064 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++++|++|+|||+++..+.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998764
No 368
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.96 E-value=0.00065 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
-.+|+||+|+|||+++++++....
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~~~ 51 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLALT 51 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHhcc
Confidence 467899999999999999997553
No 369
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.96 E-value=0.00046 Score=44.64 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||||++.+++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 370
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.96 E-value=0.00059 Score=42.94 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998864
No 371
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.95 E-value=0.00061 Score=48.53 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.-+++.|++|+||||++..+|..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4457789999999999999999887543
No 372
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.94 E-value=0.00054 Score=43.00 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 373
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.94 E-value=0.00058 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=18.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-++++||+|+||||++..++..+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999985555443
No 374
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.94 E-value=0.00064 Score=45.62 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=21.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
.-.+|+||+|+|||+++.||.-.+..
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34678999999999999999876653
No 375
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.92 E-value=0.00065 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999864
No 376
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.92 E-value=0.00066 Score=44.67 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
....+++.|++|+|||+|++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456999999999999999998764
No 377
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.91 E-value=0.00034 Score=49.81 Aligned_cols=22 Identities=18% Similarity=0.378 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.||+|+|||||++.+++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999998865
No 378
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.91 E-value=0.00073 Score=50.46 Aligned_cols=30 Identities=23% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|+.++.-+++.|+||+|||+++..+|....
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 566666799999999999999998887653
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.91 E-value=0.00068 Score=42.87 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+++.|++|+|||++++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999988643
No 380
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.90 E-value=0.0007 Score=42.87 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+++.|++|+|||++++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998754
No 381
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.90 E-value=0.00043 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
++++|++|||||++|..++.. +.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCC
Confidence 689999999999999999976 544
No 382
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.89 E-value=0.00071 Score=43.27 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999764
No 383
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.89 E-value=0.00059 Score=54.71 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++|+||+|+||||++|.++...
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3458899999999999999999863
No 384
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.89 E-value=0.00074 Score=42.83 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||++++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 385
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.89 E-value=0.00073 Score=43.28 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45999999999999999988764
No 386
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.88 E-value=0.00057 Score=43.57 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||+|++.+.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 35999999999999999998764
No 387
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.87 E-value=0.00066 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.87 E-value=0.00096 Score=42.31 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||+++..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999763
No 389
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.86 E-value=0.0007 Score=42.87 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998854
No 390
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.85 E-value=0.0013 Score=48.14 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...++++.||+|+|||++++.++..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 355799999999999999999988653
No 391
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.85 E-value=0.00055 Score=51.23 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=22.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+..++++|++|+||||++..+|..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.85 E-value=0.00074 Score=45.10 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...++++|++|+||||++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 393
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.85 E-value=0.00048 Score=51.37 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
++|+|++|+|||||++.+++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 79999999999999999998653
No 394
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.84 E-value=0.00079 Score=48.74 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
|++.. -++++||||+|||+++-.++...
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 46655 57899999999999977666544
No 395
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.84 E-value=0.00082 Score=42.41 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.83 E-value=0.00081 Score=43.45 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.83 E-value=0.00084 Score=42.41 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 398
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.83 E-value=0.001 Score=48.10 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=22.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...+.+.|+||+||||+++.++..+.
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999999998763
No 399
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.83 E-value=0.00079 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++|+||+|+||||++|.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4558899999999999999999864
No 400
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.83 E-value=0.00049 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=19.2
Q ss_pred HHHhCCCC--CccEEEEcCCCCcHHHHH
Q psy3632 46 VEQLGCQH--VKGILLYGPPGTGKTLMA 71 (121)
Q Consensus 46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~ 71 (121)
++++.++. ..-+.|.||+|||||||+
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 44444443 445889999999999997
No 401
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.81 E-value=0.00094 Score=42.71 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||++++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999998763
No 402
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.81 E-value=0.00064 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..++|.|++|+||||+++++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 403
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.81 E-value=0.0019 Score=43.50 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
-|.|-|+.||||||.++.++..+..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHC
Confidence 4788999999999999999999854
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.80 E-value=0.00087 Score=42.88 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||++++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998754
No 405
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.80 E-value=0.00082 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=23.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
..++|+|++|+||||+++.++..++.
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 45889999999999999999998764
No 406
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.80 E-value=0.00085 Score=42.55 Aligned_cols=21 Identities=33% Similarity=0.661 Sum_probs=18.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~ 76 (121)
.+++.|++|+|||++++.+.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 407
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.80 E-value=0.0006 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=21.1
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
....++|+||+|+||||++|.++..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHH
Confidence 3455889999999999999998753
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.79 E-value=0.0012 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.-.+++.|++|+|||+|++.+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999999875
No 409
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.79 E-value=0.00095 Score=43.05 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+++.|++|+|||++++.+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 410
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.79 E-value=0.0011 Score=48.17 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=25.7
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|+.+..-+++.|+||+|||+++..+|....
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577777799999999999999999887754
No 411
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.79 E-value=0.0011 Score=43.82 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~ 76 (121)
..+++.|++|+|||++++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3599999999999999999875
No 412
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.78 E-value=0.00094 Score=43.35 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.|++.|++|+|||+++..++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999865
No 413
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.78 E-value=0.00089 Score=42.82 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999875
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.76 E-value=0.001 Score=41.96 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3889999999999999999764
No 415
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.76 E-value=0.00099 Score=43.37 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||++++.+.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446999999999999999999764
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.76 E-value=0.00091 Score=42.68 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999853
No 417
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.76 E-value=0.001 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998874
No 418
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.76 E-value=0.001 Score=42.76 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..|++.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 35999999999999999999864
No 419
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.76 E-value=0.001 Score=42.42 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||++++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 420
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.75 E-value=0.0008 Score=42.55 Aligned_cols=21 Identities=48% Similarity=0.885 Sum_probs=19.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~ 76 (121)
.+++.|++|+|||++++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999864
No 421
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.0012 Score=43.32 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998864
No 422
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.74 E-value=0.0003 Score=55.08 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIG 75 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la 75 (121)
...+.|.||+||||||+++++.
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4458899999999999997653
No 423
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.74 E-value=0.0011 Score=42.49 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35999999999999999998864
No 424
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.72 E-value=0.00092 Score=45.48 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..|+|+|++|+|||++++++.+..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 459999999999999999998754
No 425
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.72 E-value=0.0012 Score=45.27 Aligned_cols=23 Identities=26% Similarity=0.098 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-++++||+|+||||++..++..+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 46779999999999888777766
No 426
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.001 Score=42.57 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.1
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998753
No 427
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.72 E-value=0.0011 Score=42.94 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 359999999999999999888754
No 428
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.71 E-value=0.001 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999874
No 429
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.71 E-value=0.0011 Score=42.61 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
....+++.|++|+|||++++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345699999999999999988873
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.70 E-value=0.0013 Score=43.96 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
...++++|.+|+||||++..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34688999999999999999998753
No 431
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.70 E-value=0.0011 Score=51.44 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+.+++.|+||||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4588999999999998887776653
No 432
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.70 E-value=0.0013 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.++++|+||+|||||++++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 38899999999999999998754
No 433
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.70 E-value=0.0013 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.4
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-.+|+||+|+|||+++.||.-.+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999986544
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.69 E-value=0.0011 Score=42.79 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999998864
No 435
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.69 E-value=0.0011 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~ 76 (121)
.+++.|++|+|||++++.+.+
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999987
No 436
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.69 E-value=0.0031 Score=48.18 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=32.1
Q ss_pred ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+.|-+..++++ .+.+... -...+-++++||+|.|||++|..++..
T Consensus 125 ~~vGR~~~l~~L-~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 125 VFVTRKKLVNAI-QQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCCCCHHHHHHH-HHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eecccHHHHHHH-HHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 477888888777 3333211 012345889999999999999998753
No 437
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.69 E-value=0.0012 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...++++|+||+||||++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458899999999999999999876
No 438
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.69 E-value=0.0011 Score=51.55 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..++.||||||||+++..+...+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999877666554
No 439
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.69 E-value=0.0012 Score=42.21 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||++++.+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 469999999999999999987643
No 440
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.0018 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
...+++.||+|||||+++..+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 45689999999999987665543
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.67 E-value=0.0013 Score=42.81 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||+|++.+.+..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 359999999999999999998653
No 442
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.67 E-value=0.00098 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.6
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
..-++|+||+|+||||++|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999843
No 443
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.67 E-value=0.0013 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||+|++.+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 459999999999999999998743
No 444
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.66 E-value=0.0013 Score=50.12 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.1
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
+..|+++|++|+||||++..+|..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999997764
No 445
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.66 E-value=0.0011 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++|.|++|+|||+++..+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 567999999999999999998874
No 446
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.66 E-value=0.0013 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998864
No 447
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.66 E-value=0.0013 Score=42.83 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=19.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999877664
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.66 E-value=0.0013 Score=42.22 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 449
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.65 E-value=0.00088 Score=43.32 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999998864
No 450
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.64 E-value=0.0015 Score=45.00 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
.+++.|++|+||||++-.+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999999988888876443
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.64 E-value=0.0015 Score=42.80 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.5
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
....+++.|++|+|||++++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345699999999999999998864
No 452
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.63 E-value=0.00084 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-.+|+||+|+|||+++.++.-.+
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred cEEEECCCCCcHHHHHHHHHHHh
Confidence 57789999999999999999665
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.63 E-value=0.0019 Score=41.92 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.8
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||++++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999998764
No 454
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.63 E-value=0.00098 Score=43.19 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||++++.+.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 359999999999999999988753
No 455
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.63 E-value=0.0014 Score=42.96 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..|++.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998864
No 456
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.63 E-value=0.0014 Score=43.00 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..+++.|++|+|||+|++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 459999999999999999988753
No 457
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.62 E-value=0.0017 Score=48.30 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.+..++++||+|+|||++++.+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34559999999999999999999875
No 458
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0013 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.|++.|++|+|||++++.+.+.
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 459
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.61 E-value=0.0015 Score=41.88 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||++++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999998753
No 460
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.60 E-value=0.0017 Score=48.69 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN 79 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~ 79 (121)
|+.++.-+++.|+||+|||+++-.+|....
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 577777799999999999999988887653
No 461
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.60 E-value=0.0015 Score=42.40 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998754
No 462
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0014 Score=42.79 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
.|++.|++|+|||+|++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 463
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.59 E-value=0.0015 Score=42.30 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999865
No 464
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.59 E-value=0.0011 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
..|++|.|+||+|||++|..+..
T Consensus 147 g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999888765
No 465
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.58 E-value=0.0016 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.|++.|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5999999999999999888764
No 466
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.58 E-value=0.0016 Score=42.44 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4999999999999999998864
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.57 E-value=0.0016 Score=42.37 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999864
No 468
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.57 E-value=0.0015 Score=44.77 Aligned_cols=29 Identities=24% Similarity=0.141 Sum_probs=23.6
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632 56 GILLYGPPGTGKTLMARQIGQMLNAREPK 84 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~ 84 (121)
.++++||+|+|||.++-+++...+...+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~li 138 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLI 138 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEE
Confidence 48999999999999998888877555433
No 469
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.57 E-value=0.0014 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999998764
No 470
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.56 E-value=0.0017 Score=42.42 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.0
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
-.+++.|++|+|||++++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 359999999999999999998753
No 471
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.56 E-value=0.0015 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.5
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
...+++.|++|+|||+|++.+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3459999999999999999998743
No 472
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.56 E-value=0.0015 Score=41.93 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred ccEEEEcCCCCcHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~ 76 (121)
..+++.|++|+|||+|++.+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3599999999999999999884
No 473
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.54 E-value=0.0048 Score=47.15 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632 23 GLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 23 Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
|-+..++++ .+.+.. -+-...+.+.++|+.|.|||++|+.+++
T Consensus 132 GR~~~~~~l-~~~L~~----------~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRV-IKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHH-HHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHH-HHHHhc----------ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 899888887 333311 1112245688999999999999999996
No 474
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.54 E-value=0.0016 Score=42.44 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 46999999999999999999873
No 475
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.53 E-value=0.0016 Score=42.93 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|+..+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 476
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.53 E-value=0.0018 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...|+++|++|+|||+|+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999998854
No 477
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.52 E-value=0.0014 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+.+.|+||+|||||++++.+.
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999875
No 478
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.51 E-value=0.0013 Score=42.20 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
-.+++.|++|+|||++++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999998874
No 479
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.51 E-value=0.0017 Score=43.27 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999875
No 480
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.51 E-value=0.0019 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.2
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+.|.|+||+||||+.+++.+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 445899999999999999999983
No 481
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.50 E-value=0.0017 Score=43.12 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.3
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||++++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35999999999999999998764
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.47 E-value=0.0016 Score=42.14 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.3
Q ss_pred CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 53 HVKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 53 ~~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
....+++.|++|+|||++++.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999998764
No 483
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.46 E-value=0.0016 Score=45.73 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.++|.|+||+|||||.+++.+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999874
No 484
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.45 E-value=0.0021 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.4
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|+..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999864
No 485
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.45 E-value=0.0022 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.9
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
+..++|+||+|+||||++|.+ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 356889999999999999999 54
No 486
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.42 E-value=0.0017 Score=45.04 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|.||+||||+..++.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999875
No 487
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0021 Score=42.52 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.5
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|+..+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 488
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.41 E-value=0.0021 Score=51.53 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=18.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632 56 GILLYGPPGTGKTLMARQIGQML 78 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~~ 78 (121)
..++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999877666654
No 489
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.41 E-value=0.0028 Score=54.46 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=30.1
Q ss_pred hHHHHHh---CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 43 PEVVEQL---GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 43 ~~~~~~~---~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
+++.+-+ |+.++..++|+||||+|||+++..+|.....
T Consensus 718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 3444444 4777888999999999999999999887654
No 490
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.41 E-value=0.0018 Score=41.96 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQ 76 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~ 76 (121)
...+++.|++|+|||++++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44699999999999999999984
No 491
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.40 E-value=0.0018 Score=48.96 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=25.9
Q ss_pred CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632 50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80 (121)
Q Consensus 50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~ 80 (121)
|+.+..-+++.|+||+|||+++..+|.....
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 5666667999999999999999998887654
No 492
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.38 E-value=0.0025 Score=41.87 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.8
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|.+|+|||+|+..+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4999999999999999998853
No 493
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.38 E-value=0.00073 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.3
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..-+.|+|+||+|||||++++++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Confidence 345899999999999999999886
No 494
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.38 E-value=0.0012 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=9.9
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..+++.|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988753
No 495
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.37 E-value=0.0026 Score=44.04 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632 57 ILLYGPPGTGKTLMARQIGQMLNAR 81 (121)
Q Consensus 57 vll~Gp~G~GKT~l~~~la~~~~~~ 81 (121)
+.|+|++||||||+++.++..++.+
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g~~ 28 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYSAV 28 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCe
Confidence 7799999999999999999876543
No 496
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0023 Score=41.63 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|++|+|||++++.+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999865
No 497
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.37 E-value=0.0021 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred cEEEEcCCCCcHHHHHHHHHHH
Q psy3632 56 GILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 56 ~vll~Gp~G~GKT~l~~~la~~ 77 (121)
.+++.|+||+|||++..++.+.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999873
No 498
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.36 E-value=0.0022 Score=41.73 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.4
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...|++.|++|+|||+|++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 335999999999999999988753
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.36 E-value=0.0024 Score=42.34 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.2
Q ss_pred ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 55 KGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 55 ~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
..|+++|++|+|||+|++.+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999998853
No 500
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=42.16 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.0
Q ss_pred CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632 54 VKGILLYGPPGTGKTLMARQIGQM 77 (121)
Q Consensus 54 ~~~vll~Gp~G~GKT~l~~~la~~ 77 (121)
...+++.|++|+|||++++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345999999999999999988753
Done!