RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3632
(121 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 75.6 bits (186), Expect = 2e-18
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+ G D+ + + P ++LG + KG+L+ GPPGTGKTL+A+ I
Sbjct: 14 VAGCDEAKEEV--AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71
Query: 81 REPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
P ++G ++ +VG + VR +F A++
Sbjct: 72 --PFFTISGSDFVEMFVGVGASRVRDMFEQAKK 102
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 73.7 bits (181), Expect = 8e-18
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+ G ++ + + + P ++G + KG+LL GPPG GKT +AR +
Sbjct: 11 VAGAEEAKEEL--KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 68
Query: 81 REPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
P I +G ++ +VG A VR LF A+
Sbjct: 69 --PFITASGSDFVEMFVGVGAARVRDLFETAKR 99
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 70.8 bits (173), Expect = 2e-16
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 43 PEVVEQLGCQHVKGILL-YGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESE 100
P V E G ++ G+++ G +GKT + +G+ L ++ V + L Y +
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFN 170
Query: 101 ANVRRLFADAEE 112
V + +
Sbjct: 171 VFVDDIARAMLQ 182
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 68.7 bits (167), Expect = 1e-15
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
IGGL+ + + V P+ + G KG+L YGPPG GKTL+A+ I A
Sbjct: 9 IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 67
Query: 81 REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSH 119
I GP++L + GESEANVR +F A + V
Sbjct: 68 NFISI-KGPELLTMWFGESEANVREIFDKARQAAPCVLF 105
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 59.7 bits (143), Expect = 2e-12
Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+GG K+ I + + P + + +G + +GILLYGPPGTGKTL+AR +
Sbjct: 6 VGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG- 63
Query: 81 REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
++NGP+++ K GESE+N+R+ F +AE+ +
Sbjct: 64 AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 100
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 52.4 bits (125), Expect = 9e-10
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY-VGESEANVRRLFADAEEE 113
+ L GP +GKT +A + ++ + VN P + +G + +F D +
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCG-GKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGT 213
Query: 114 EKRVSHK 120
Sbjct: 214 GGESRDL 220
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 48.4 bits (114), Expect = 2e-08
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANV 103
+ + + +LL GPP +GKT +A +I + N KI P + + ++
Sbjct: 30 QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI-CSPDKMIGFSETAKCQA 88
Query: 104 RR 105
+
Sbjct: 89 MK 90
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 46.9 bits (110), Expect = 8e-08
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP---QVLDKYVGESEANVRRLFADAE 111
LL G PG+GKT + I + +++ Q + + + +
Sbjct: 33 TAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT 91
Query: 112 EEEKRVSHKW 121
R++
Sbjct: 92 PYSNRMTEAI 101
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 42.1 bits (98), Expect = 4e-06
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNA 80
K IL+ GP G GKT +AR++ ++ NA
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANA 75
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 41.4 bits (96), Expect = 6e-06
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRR 105
K IL+ GP G GKT +AR++ ++ NA K+ YVG+ ++ R
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR 100
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 39.0 bits (89), Expect = 4e-05
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK---IVNGPQVLDKYVGESEANVRRLFA 108
H L G PGTGKT+ R++ ++ + +NG + E
Sbjct: 41 HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIP 100
Query: 109 DAEEEEKRVSHKW 121
R
Sbjct: 101 FPRRGLSRDEFLA 113
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 38.4 bits (88), Expect = 7e-05
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 48 QLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
+ + ++ +LL+GPPG GKT +A I L
Sbjct: 29 KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 61
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 38.0 bits (87), Expect = 9e-05
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 56 GILLYGPPGTGKTLMARQIGQML 78
G+L++G GTGK+ R + +L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALL 52
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 37.4 bits (85), Expect = 2e-04
Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 5/98 (5%)
Query: 23 GLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82
E A+ R + G G GKT +A+ + ++
Sbjct: 20 VRRGEAEALARIYLNRLLSGA-----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA 74
Query: 83 PKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSHK 120
K + + L + + +
Sbjct: 75 AKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR 112
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 35.5 bits (80), Expect = 6e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLN 79
+ +LYGPPG GKT A + Q L
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELG 77
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 34.6 bits (78), Expect = 0.001
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
+ + L GPPG GKT + + ++L + +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 34.2 bits (77), Expect = 0.002
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNA 80
+LL GPPG GKT +A I L
Sbjct: 36 DHVLLAGPPGLGKTTLAHIIASELQT 61
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 33.0 bits (74), Expect = 0.004
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNA-REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK 115
++ G G+GKT + + G+ L + VN + + E +VR E +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 116 RV 117
Sbjct: 63 GY 64
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 33.2 bits (74), Expect = 0.005
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 34 RAFASRVFPPEVVEQLGCQHVKG-----ILLYGPPGTGKTLMARQIGQMLN 79
++ + E+ L + +LLYGP GTGK + + +
Sbjct: 8 KSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 58
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 33.1 bits (74), Expect = 0.005
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLNAR 81
K + + G +GK+++ ++ + N
Sbjct: 7 AKTVAILGGESSGKSVLVNKLAAVFNTT 34
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 32.8 bits (73), Expect = 0.005
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 57 ILLYGPPGTGKTLMARQI 74
+L+ PG G + +
Sbjct: 27 LLIQALPGMGDDALIYAL 44
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.6 bits (74), Expect = 0.006
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 57 ILLYGPPGTGKTLMARQI 74
+L+ G G GK ++AR I
Sbjct: 26 VLITGESGVGKEVVARLI 43
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 32.3 bits (73), Expect = 0.008
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPK 84
IL+ G + ++ ++ + + PK
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 32.0 bits (71), Expect = 0.009
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81
+ I L GP G GK+ + RQ+ Q LN
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNME 29
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.009
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
ILL G PG GKT + +++
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSG 29
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.1 bits (71), Expect = 0.010
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
++G TGKT + + + + P G + Y+
Sbjct: 26 TEMFGEFRTGKTQICHTL--AVTCQLPIDRGGGEGKAMYIDTEGTF 69
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 32.0 bits (71), Expect = 0.011
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRR 105
L+G TGK+ + + + L + VR
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL 85
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.0 bits (71), Expect = 0.012
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR 116
L+ G TGK+ + + LN + Y+ S + + +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI--SYKDFLLELQKEINKLVK 89
Query: 117 VSHKW 121
Sbjct: 90 RLPSL 94
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 31.9 bits (71), Expect = 0.013
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
I++ G P GKT +++++ + LN
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLNFI 29
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.8 bits (71), Expect = 0.014
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 57 ILLYGPPGTGKTLMARQIGQML 78
IL G GTGKTL+ + +
Sbjct: 29 ILATGATGTGKTLLVSRFVENA 50
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.5 bits (70), Expect = 0.014
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
K +++ G PG G T ++ L
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 31.4 bits (70), Expect = 0.016
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+LL GPPG GK A ++ + L
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLG 25
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 31.7 bits (71), Expect = 0.017
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV-LDKYVGESEANVRRLFADA---- 110
ILL GP G+GKTLMA+ + + L+ + E + RL +
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 129
Query: 111 EEEEKRV 117
++ +K +
Sbjct: 130 QKAQKGI 136
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 31.1 bits (69), Expect = 0.018
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
++L GPPG GK A + + +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFH 27
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.0 bits (69), Expect = 0.019
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
++L G PG GK A +I
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYG 25
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 31.1 bits (69), Expect = 0.020
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81
+ I + G G G T + R++ + L
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYE 29
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 31.2 bits (69), Expect = 0.024
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREP 83
L P G GK+++A Q+ +
Sbjct: 32 GALVSPGGAGKSMLALQLAAQIAGGPD 58
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.025
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 57 ILLYGPPGTGKTLMARQI 74
L+ G GTGKTL + Q
Sbjct: 29 TLVSGTSGTGKTLFSIQF 46
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 30.7 bits (68), Expect = 0.025
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLN 79
K I+ G G+GK+ +AR + + L+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLD 25
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 30.9 bits (69), Expect = 0.026
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93
L G G GKT +AR + + LN V D
Sbjct: 37 YLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 73
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 30.7 bits (68), Expect = 0.026
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
+LL G PG+GK+ +A + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVP 31
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 30.6 bits (69), Expect = 0.026
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87
++ GP TGK+ + VN
Sbjct: 56 LVFCGPANTGKSYFGMSFIHFIQGAVISFVN 86
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.8 bits (68), Expect = 0.027
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR 81
H+ +L G G+GK+ +A ++ L+A
Sbjct: 6 HHI--YVLMGVSGSGKSAVASEVAHQLHAA 33
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 30.8 bits (68), Expect = 0.027
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
G G+GKT + Q L E + V A + ++ D E
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSK----GEVAQPKAVYIDTEG 88
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.8 bits (68), Expect = 0.029
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
I L G +GK +AR + LN +
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQ 33
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 30.6 bits (68), Expect = 0.029
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+++ G P +GK I
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQ 28
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.7 bits (68), Expect = 0.030
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
I+L G P GK A+ I +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYG 25
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 30.7 bits (68), Expect = 0.032
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+ + G PG+GK I +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFG 31
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 30.4 bits (67), Expect = 0.033
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
IL+ G PGTGKT MA I L+
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELD 30
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 30.3 bits (67), Expect = 0.036
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKI 85
I++ G PG GKT + ++I + L R
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.3 bits (67), Expect = 0.037
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+L GPPG GK A ++ +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFC 28
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 30.4 bits (67), Expect = 0.041
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
+ L G G GKT ++ + + L
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCH 46
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.041
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+ G PG+GK ++ +I +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFE 31
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 30.0 bits (66), Expect = 0.042
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAR 81
+ I+L G GK+ + R + +L
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEP 30
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.0 bits (66), Expect = 0.048
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAE 111
++G G+GKT +A + M+ + V+ E+ R+ A+
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIW-IDTENTFRPERIREIAQ 92
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.0 bits (66), Expect = 0.051
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 54 VKGILLYGPPGTGKTLMARQIGQMLN 79
V I + G PG GK ++ + +
Sbjct: 8 VSVIFVLGGPGAGKGTQCEKLVKDYS 33
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 30.0 bits (66), Expect = 0.053
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+L G PG+GK+ + R++ + L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALG 26
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.0 bits (66), Expect = 0.053
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
++ GP G GK+ +++ L+
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLD 27
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.9 bits (66), Expect = 0.056
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
I+L G PG GK A +I +
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG 25
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 29.6 bits (65), Expect = 0.063
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
I + GP G GK + + + + L
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQ 28
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.6 bits (65), Expect = 0.063
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+ + G PG GK +I +
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYG 26
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.5 bits (65), Expect = 0.065
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLN 79
K I + G PG+GK +I Q
Sbjct: 9 KIIFVVGGPGSGKGTQCEKIVQKYG 33
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.6 bits (65), Expect = 0.070
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
K ++ G PG GK+ + ++ ++L+ +
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 29.6 bits (65), Expect = 0.075
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
I++ G GK+ RQ K V
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKV 67
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.5 bits (65), Expect = 0.077
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNA 80
++ G PG GK+ ++
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGY 40
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.5 bits (65), Expect = 0.081
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPK 84
I + G +GK+ + +I Q+L E
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVD 32
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 0.086
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 34 RAFASRVFPPEVVEQLGCQHVKG----ILLYGPPGTGKTLMARQIGQMLNAREP 83
+ V L +L YGPPGTGKT + + L +
Sbjct: 9 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDL 62
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 29.1 bits (64), Expect = 0.089
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 42 PPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92
PP V + L+ P G+GK+ +V P V
Sbjct: 1 PPAVPQSFQV-----AHLHAPTGSGKSTKVPAA--YAAQGYKVLVLNPSVA 44
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 0.14
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 57 ILLYGPPGTGKTLMARQI 74
IL G PG+GK+ AR+
Sbjct: 5 ILTIGCPGSGKSTWAREF 22
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 28.6 bits (63), Expect = 0.15
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPK 84
I GP G+GK+ + QI L +
Sbjct: 30 IFFSGPQGSGKSFTSIQIYNHLMEKYGG 57
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 28.8 bits (64), Expect = 0.15
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82
++ L + LL G G GKT +A + + +
Sbjct: 29 RAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 67
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.4 bits (62), Expect = 0.18
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKI 85
+ GTGKT + +++ L AR +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRP 33
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 28.4 bits (63), Expect = 0.18
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 57 ILLYGPPGTGKTLMARQIGQML 78
I L+GP TGKT +A I +
Sbjct: 107 IWLFGPATTGKTNIAEAIAHTV 128
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.2 bits (61), Expect = 0.24
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYV-GESEANVRRLFADAEEEEK 115
+G TGKT ++ + + A+ P P ++ E+ RL A+
Sbjct: 40 TEAFGEFRTGKTQLSHTL--CVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNV 97
Query: 116 RVSHKW 121
Sbjct: 98 DHDAVL 103
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor
Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 28.1 bits (62), Expect = 0.25
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 54 VKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87
+G L+ PP GKT++ + I Q + P V
Sbjct: 41 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 76
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 28.2 bits (62), Expect = 0.25
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 57 ILLYGPPGTGKTLMARQI 74
+ L+G G+GK+++A Q
Sbjct: 47 LFLHGRAGSGKSVIASQA 64
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 0.28
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 55 KGILLYGPPGTGKT-LMARQIGQMLNAREPKIVNGP 89
+ +L+ G GTGK+ L+ L + ++ P
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 27.7 bits (60), Expect = 0.30
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
I + GP +GK+ +A+ I +
Sbjct: 6 IAIDGPASSGKSTVAKIIAKDFG 28
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.3 bits (59), Expect = 0.30
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 57 ILLYGPPGTGKTLMA 71
+L PG GKT
Sbjct: 10 TVLDFHPGAGKTRRF 24
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 27.8 bits (60), Expect = 0.31
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90
+ + G +GKT +A Q+ Q L + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 158
Score = 27.5 bits (61), Expect = 0.32
Identities = 5/40 (12%), Positives = 17/40 (42%)
Query: 82 EPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSHKW 121
+ K+ + D + ++ V+ +++ + +R W
Sbjct: 7 DVKLPQNVKTTDWFQEWPDSYVKHIYSSDDRNAQRHLSSW 46
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 27.3 bits (59), Expect = 0.49
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 40 VFPPEVVEQLGCQHVKG----ILLYGPPGTGKTLMARQIGQMLNA 80
V E +++L G +++ G PG GKT + L
Sbjct: 18 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 62
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 27.2 bits (59), Expect = 0.52
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
+L GPPG GKT A + + L
Sbjct: 48 LLFAGPPGVGKTTAALALARELF 70
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.2 bits (59), Expect = 0.58
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 61 GPPGTGKTLMARQIGQMLNAREPKI 85
G PG GK+ +G +L A K+
Sbjct: 58 GVPGVGKSTTIDALGSLLTAAGHKV 82
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.4 bits (58), Expect = 0.66
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL 92
G+LL G G GK+ A L + V +
Sbjct: 16 VGVLLTGRSGIGKSECALD----LINKNHLFVGDDAIE 49
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.8 bits (58), Expect = 0.66
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 57 ILLYGPPGTGKTLMA-RQIGQMLNAREPKIV 86
++ PG GKT I + R + +
Sbjct: 12 TIMDLHPGAGKTKRYLPAIVREAIKRGLRTL 42
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.7 bits (58), Expect = 0.71
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV------NGPQVLDKYVGESE----ANVRRL 106
I L G +GK+ +A ++ L N L+K +G SE N+RR+
Sbjct: 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRI 86
Query: 107 FADAEEEEKRVSHKW 121
A+ S
Sbjct: 87 AEVAKLFADSNSIAI 101
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 26.2 bits (57), Expect = 1.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 9/51 (17%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG--PQVL 92
V++ L + +L G PG GKT + + Q +IV G P+ L
Sbjct: 33 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQ-------RIVKGDVPEGL 76
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.8 bits (56), Expect = 1.2
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
L G G+GKT A ++ + + +
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPL 42
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator
SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Length = 123
Score = 25.6 bits (56), Expect = 1.3
Identities = 8/34 (23%), Positives = 9/34 (26%)
Query: 27 EFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLY 60
E+ R A A P V L Y
Sbjct: 57 EWAGCVRDAVARGEVPDGTDPHGVVAAVSAPLYY 90
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 25.7 bits (56), Expect = 1.3
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESE 100
G+L+ G G GK+ A + L R ++V V + + + E
Sbjct: 16 VGVLITGDSGIGKSETALE----LIKRGHRLVADDNVEIREISKDE 57
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 25.8 bits (56), Expect = 1.3
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREP 83
I + G GK+ AR + +L+
Sbjct: 83 ISIAGSVAVGKSTTARVLQALLSRWPE 109
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 25.7 bits (56), Expect = 1.4
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
I + G G G + + Q+ K V
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAV 36
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.8 bits (56), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 57 ILLYGPPGTGKTLMARQIGQ 76
+ L G G GKT + R + Q
Sbjct: 36 VYLNGDLGAGKTTLTRGMLQ 55
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 25.9 bits (55), Expect = 1.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87
L+ P G GKTL+A I + + V
Sbjct: 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVL 56
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.6 bits (55), Expect = 1.6
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 61 GPPGTGKTLMARQIGQMLNAREPKIV 86
G +GKT + + ++
Sbjct: 8 GYKHSGKTTLMEKWVAAAVREGWRVG 33
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.5 bits (55), Expect = 1.6
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
+L+ G G GKT ++G+ K++
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVM 38
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 25.3 bits (55), Expect = 1.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 55 KGILLYGPPGTGKTLMA 71
G+L+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.5 bits (55), Expect = 1.9
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
I+L G GTGK A ++ + K+
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVG 44
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 25.6 bits (55), Expect = 1.9
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKI 85
+ + G PG GK+ G +L K+
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKV 85
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 25.5 bits (56), Expect = 2.1
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 54 VKG--ILLYGPPGTGKT-LMARQIGQMLNAREPKIV 86
KG I L+G G GKT L+ I + A V
Sbjct: 66 AKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV 101
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 24.7 bits (53), Expect = 3.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
I++ G GTGKT ++ +M +V
Sbjct: 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVV 43
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 24.7 bits (52), Expect = 3.8
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 52 QHVKG-ILLYGPPGTGKT-LMARQIGQMLNAR 81
+ V G L+ G+GKT ++ +I ++
Sbjct: 11 EFVTGPCLVLAGAGSGKTRVITNKIAHLIRGC 42
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 24.4 bits (52), Expect = 4.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 44 EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN 87
E +E LG I +YG GTGKT + + G R +++
Sbjct: 27 EALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIY 69
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 24.2 bits (52), Expect = 4.9
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
IL+ G G GKT ++ + + ++
Sbjct: 12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVM 41
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 24.1 bits (52), Expect = 5.2
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFA 108
I GP G GK+ + + + +I Q +D S N R
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI---SLENWRSQIG 79
>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
[TaxId: 554]}
Length = 271
Score = 23.9 bits (51), Expect = 5.9
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 89 PQVLDKYVGESEANVRRLFADAEEEEKRVSHKW 121
P+++ E++A + L A ++ H W
Sbjct: 203 PRIVGFTDHETQAFFQELGAFLKQPRYYYKHFW 235
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 23.8 bits (50), Expect = 6.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 55 KGILLYGPPGTGKTLMARQI 74
+ +L G +GKTL+ ++
Sbjct: 1 RAVLFVGLCDSGKTLLFVRL 20
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 23.8 bits (50), Expect = 6.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 52 QHVKGILLYGPPGTGKTLMARQI 74
Q V+ ILL G GKT + +Q+
Sbjct: 15 QEVR-ILLLGLDNAGKTTLLKQL 36
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 24.2 bits (51), Expect = 6.4
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 52 QHVKG-ILLYGPPGTGKT-LMARQIGQMLNARE 82
+ +G +L+ G+GKT ++ +I ++ +
Sbjct: 21 RTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH 53
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 23.9 bits (50), Expect = 6.9
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 40 VFPPEVVEQLGCQHVKG----ILLYGPPGTGKTLMARQIGQMLNA 80
EV+ + +G +L YGPPGTGKT + + +
Sbjct: 17 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 24.0 bits (51), Expect = 7.5
Identities = 7/53 (13%), Positives = 13/53 (24%)
Query: 41 FPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD 93
+ L K ++ G + Q L +I+ V
Sbjct: 226 VTDTAYKALAQNGAKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQ 278
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 23.8 bits (50), Expect = 7.9
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 57 ILLYGPPGTGKTLMARQI 74
++L GP G GK+ + +++
Sbjct: 3 VVLSGPSGAGKSTLLKKL 20
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 23.4 bits (49), Expect = 8.1
Identities = 7/18 (38%), Positives = 14/18 (77%)
Query: 57 ILLYGPPGTGKTLMARQI 74
I++ GP GTGK+ + +++
Sbjct: 4 IVISGPSGTGKSTLLKKL 21
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 23.7 bits (50), Expect = 8.2
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)
Query: 55 KGILLYGPPGTGK-TLMAR 72
K ++L G G G+ +
Sbjct: 4 KTLVLLGAHGVGRRHIKNT 22
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 23.5 bits (49), Expect = 8.9
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 57 ILLYGPPGTGKTLMARQI 74
+L+ G GKT + ++
Sbjct: 5 LLMLGLDNAGKTTILKKF 22
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 23.4 bits (49), Expect = 8.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 57 ILLYGPPGTGKTLMARQI 74
++L GP GK+ + R +
Sbjct: 5 VVLSGPSAVGKSTVVRCL 22
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 23.5 bits (49), Expect = 9.2
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 57 ILLYGPPGTGKTLMARQI 74
IL+ G GKT + ++
Sbjct: 3 ILMVGLDAAGKTTILYKL 20
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 23.5 bits (49), Expect = 9.3
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK 84
++ G ++ G GKTL + L + P
Sbjct: 77 ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD 109
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 23.5 bits (50), Expect = 9.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 48 QLGCQHVKGI--LLYGPPGTGKTLMARQIGQMLNAR----EPKIVNGPQVLD 93
+ +++KG + G G GK+ + I L R K+ G
Sbjct: 87 EELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTT 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.405
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,240
Number of extensions: 19183
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 128
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)