BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3639
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DK
Sbjct: 22 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDK 79
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 80 TVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
Score = 74.3 bits (181), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DK
Sbjct: 145 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDK 202
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 203 TVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DK
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDK 161
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 162 TVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 73.9 bits (180), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
Q + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DKT+KLW
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR 332
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 333 NGQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V VAFS P G I + S DK
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDK 530
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 531 TVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V VAFS P G I + S DK
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDK 407
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 408 TVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 72.8 bits (177), Expect = 4e-14, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V VAFS P G I + S DK
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDK 120
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 121 TVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 71.6 bits (174), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/108 (42%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V+ VAFS P I + S DK
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDK 448
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 449 TVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/108 (42%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 6 VTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
V SP Q + S D+T KLW+ ++G + T GH + V VAF P G I + S DK
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDK 284
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T+KLW + + +QT GHS+ V GV FSPD T S S D T +++N
Sbjct: 285 TVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST 97
H + V VAFS P G I + S DKT+KLW + + +QT GHS+ V GV FSPD T
Sbjct: 14 AHSSSVRGVAFS-PDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 98 FCSCSMDHTARIFN 111
S S D T +++N
Sbjct: 72 IASASDDKTVKLWN 85
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 231 KCLKTYTGHKNE 242
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 89
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 83 SNLLVSASDDKTLKIWD 99
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 316
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 71 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 129
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 130 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 179
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 229
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 230 KCLKTYTGHKNE 241
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 273 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 310
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 88
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 23 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 82 SNLLVSASDDKTLKIWD 98
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 315
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 174
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 225 KCLKTYTGHKNE 236
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 83
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 18 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 77 SNLLVSASDDKTLKIWD 93
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 310
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFD 62
+ + + + L + D T KLWD G + TY GH+N Y + FS G I++GS D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+ +W +E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 228 KCLKTYTGHKNE 239
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 76
S D+ K+W G T GH+ + VA+S + +++ S DKTLK+W + +C+
Sbjct: 45 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCL 103
Query: 77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+T +GHS V F+P + S S D + RI++
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + S DK +K+W + + +T GH + V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 80 SNLLVSASDDKTLKIWD 96
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFD 62
+ + + + L + D T KLWD G + TY GH+N Y + FS G I++GS D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSM--DHTARIFNT 112
+ +W +E +Q +GH+ V+ P ++ S ++ D T ++F +
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 228 KCLKTYTGHKNE 239
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 86
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 80 SNLLVSASDDKTLKIWD 96
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 65 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 123
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 124 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 177
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 173
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 223
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 224 KCLKTYTGHKNE 235
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 267 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 304
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 82
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 17 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 76 SNLLVSASDDKTLKIWD 92
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 309
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 67 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 125
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 126 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 175
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 225
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 226 KCLKTYTGHKNE 237
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 269 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 306
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 84
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 19 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 78 SNLLVSASDDKTLKIWD 94
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 83 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 141
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 142 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 195
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 191
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 241
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 242 KCLKTYTGHKNE 253
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 285 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 322
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 100
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 35 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 94 SNLLVSASDDKTLKIWD 110
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 327
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 88 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 146
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 147 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 196
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 247 KCLKTYTGHKNE 258
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 290 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ S D+ K+W G T GH+ + VA+S + +++ S DKTLK+W + +
Sbjct: 62 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK 120
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
C++T +GHS V F+P + S S D + RI++
Sbjct: 121 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 40 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 99 SNLLVSASDDKTLKIWD 115
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 332
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 231 KCLKTYTGHKNE 242
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ S D+ K+W G T GH+ + VA+S + +++ S DKTLK+W + +
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK 104
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
C++T +GHS V F+P + S S D + RI++
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 83 SNLLVSASDDKTLKIWD 99
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 316
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 124
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 125 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 174
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 224
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 225 KCLKTYTGHKNE 236
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 83
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 18 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 77 SNLLVSASDDKTLKIWD 93
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 128 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 228 KCLKTYTGHKNE 239
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFD 62
+ + + + L + D T KLWD G + TY GH+N Y + FS G I++GS D
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+ +W +E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 262 NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 86
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 80 SNLLVSASDDKTLKIWD 96
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 72 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 130
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 131 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 180
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 230
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 231 KCLKTYTGHKNE 242
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 311
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ S D+ K+W G T GH+ + VA+S + +++ S DKTLK+W + +
Sbjct: 46 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK 104
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
C++T +GHS V F+P + S S D + RI++
Sbjct: 105 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 83 SNLLVSASDDKTLKIWD 99
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 316
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 90 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 148
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 149 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 198
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 248
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 249 KCLKTYTGHKNE 260
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 292 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 329
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ S D+ K+W G T GH+ + VA+S + +++ S DKTLK+W + +
Sbjct: 64 SSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGK 122
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
C++T +GHS V F+P + S S D + RI++
Sbjct: 123 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 42 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 101 SNLLVSASDDKTLKIWD 117
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 334
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 62 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 120
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W +C++T HS V V F+ D S S S D RI++T
Sbjct: 121 GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 170
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 220
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 221 KCLKTYTGHKNE 232
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 264 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 301
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 79
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 14 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 73 SNLLVSASDDKTLKIWD 89
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 306
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W C++T HS V V F+ D S S S D RI++T
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 86
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+ ++++
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D LKLW +K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 228 KCLKTYTGHKNE 239
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 80 SNLLVSASDDKTLKIWD 96
Score = 32.3 bits (72), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 313
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 1 MGVPRV--TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
+G+ V +S ++ S D+T K+WD+ SG + T +GH N V+ F+ P + I++
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVS 127
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GSFD+++++W C++T HS V V F+ D S S S D RI++T
Sbjct: 128 GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 9 SPQRCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+PQ L +GS+D + ++WD+K+G + T H + V AV F+ G I++ S+D +
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCR 177
Query: 67 LWASAKEECIQTY-RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +A +C++T + V V FSP+ + ++D+T ++++
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ SYD C++WD SG + T N + P G IL + D TLKLW +K
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 74 ECIQTYRGHSAE 85
+C++TY GH E
Sbjct: 228 KCLKTYTGHKNE 239
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV--AFSEPYGDKILTGSFDKTLKLWASA 71
L + D T KLWD G + TY GH+N Y + FS G I++GS D + +W
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+E +Q +GH+ V+ P ++ S ++++ I
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 308
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V SP + + S D+ K+W G T GH+ + VA+S + +++
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD-SNLLVSA 86
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DKTLK+W + +C++T +GHS V F+P + S S D + RI++
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T GH V +V FS P G+ + + S DK +K+W + + +T GH + V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 95 QSTFCSCSMDHTARIFN 111
+ S S D T +I++
Sbjct: 80 SNLLVSASDDKTLKIWD 96
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWAS 70
++GS D +W++++ + +GH +VV + A P + I + + DKT+KLW S
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLWKS 313
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTY-----RGHQNVVYAVAFSEPYGDKILTGS 60
V R +TGS D+TC LWD+ +G I + GH V +++ + + ++GS
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 61 FDKTLKLW-ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
D T++LW ++TY GH ++ V F PD F + S D T R+F+
Sbjct: 226 CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQN-------VVYAVAFSEPYGDKILTGSFDK 63
QR TGS D TC+L+D+++GH++ Y + +V +VAFS G + G +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS-GRLLFAGYSNG 320
Query: 64 TLKLWASAKEECIQTY----RGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+W + E + H + + S D S C+ S D +I+
Sbjct: 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T +GH VY++ ++ P + I++ S D L +W + + + H V+ F+P+
Sbjct: 61 TLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 95 QSTFCSCSMDHTARIFN 111
+ +D IFN
Sbjct: 120 GQSVACGGLDSACSIFN 136
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-----RGHSAEVVGVTF- 91
GH+ + + +++TGS D+T LW + I + GH+A+V+ ++
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 92 SPDQSTFCSCSMDHTARIFN 111
S + + F S S D T R+++
Sbjct: 215 SLNANMFISGSCDTTVRLWD 234
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGDKILTGSFDKTL 65
T+S + LT S D TC LWD++SG + ++ GH V + + G+ ++G DK
Sbjct: 163 TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+W +C+Q + H ++V V + P F S S D T R+++
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVY---AVAFSEPYGDKILTGSFDKTLKLWASA 71
+GS D TC+L+D+++ E+ Y +++++ +V FS G + G D T+ +W
Sbjct: 257 SGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLS-GRLLFAGYNDYTINVWDVL 314
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
K + GH V + SPD + FCS S DHT R++
Sbjct: 315 KGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S + G D T +WD+ G + GH+N V + S P G +GS+D TL++W
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS-PDGTAFCSGSWDHTLRVW 353
Query: 69 A 69
A
Sbjct: 354 A 354
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 76
S D T KLWD + I T GH + V +V+ P GD I++ S DKT+K+W C+
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCV 227
Query: 77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+T+ GH V V + D + SCS D T R++
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
L+GS D+T K+WD+ +G + T GH N V V F G IL+ + DKTL++W +
Sbjct: 312 LSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSG-GKFILSCADDKTLRVWDYKNK 370
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
C++T H V + F + S+D T +++
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ S D T K+WD ++G T +GH + V ++F G + + S D T+KLW
Sbjct: 124 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGF 182
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
ECI+T GH V V+ P+ S S D T +++
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ S D+T K+W++++G+ + T+ GH+ V V ++ G I + S D+T+++W A +
Sbjct: 208 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATK 266
Query: 74 ECIQTYRGHSAEVVGVTFSPDQS 96
EC R H V ++++P+ S
Sbjct: 267 ECKAELREHRHVVECISWAPESS 289
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF---------SEPYGDK----------IL 57
S D+T ++W + + R H++VV +++ SE G + +L
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312
Query: 58 TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+GS DKT+K+W + C+ T GH V GV F SC+ D T R+++
Sbjct: 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST 97
GH++ V V F P +++ S D T+K+W + +T +GH+ V ++F
Sbjct: 106 GHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 164
Query: 98 FCSCSMDHTARIFN 111
SCS D T ++++
Sbjct: 165 LASCSADMTIKLWD 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++S Q L+GS+D T +LWD+ +G + GH V +VAFS +I++GS DKT+
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI 152
Query: 66 KLWASAKEECIQTYR--GHSAEVVGVTFSPDQST--FCSCSMDHTARIFN 111
KLW + C T + HS V V FSP+ S SC D +++N
Sbjct: 153 KLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 3 VPRVTSSPQ---RCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGD 54
V ++ ++PQ L+ S D+T +W + G RGH + V V S G
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQ 99
Query: 55 KILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
L+GS+D TL+LW + + GH+ +V+ V FS D S S D T +++NT+
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SF 61
+S ++ ++GS D+T KLW+ +C Y H V V FS + I+ +
Sbjct: 137 SSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 193
Query: 62 DKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
DK +K+W A + + GH+ + VT SPD S S D A +++
Sbjct: 194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVVGV 89
T +GH V +A + + D IL+ S DKT+ +W ++E + RGHS V V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
S D S S D T R+++
Sbjct: 93 VISSDGQFALSGSWDGTLRLWD 114
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++S Q L+GS+D T +LWD+ +G + GH V +VAFS +I++GS DKT+
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD-NRQIVSGSRDKTI 129
Query: 66 KLWASAKEECIQTYR--GHSAEVVGVTFSPDQST--FCSCSMDHTARIFN 111
KLW + C T + HS V V FSP+ S SC D +++N
Sbjct: 130 KLWNTLG-VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 3 VPRVTSSPQ---RCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGD 54
V ++ ++PQ L+ S D+T +W + G RGH + V V S G
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD-GQ 76
Query: 55 KILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
L+GS+D TL+LW + + GH+ +V+ V FS D S S D T +++NT+
Sbjct: 77 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVVGV 89
T +GH V +A + + D IL+ S DKT+ +W ++E + RGHS V V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
S D S S D T R+++
Sbjct: 70 VISSDGQFALSGSWDGTLRLWD 91
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SF 61
+S ++ ++GS D+T KLW+ +C Y H V V FS + I+ +
Sbjct: 114 SSDNRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW 170
Query: 62 DKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
DK +K+W A + + GH+ + VT SPD S S D A +++
Sbjct: 171 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
T S D+ K+WD +G + TY H V F+ +L TGS D LKLW ++
Sbjct: 674 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 733
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
EC T GH+ V FSPD SCS D T R+++
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQS 96
R H + VY FS+ G +I + DKTL+++ + E + + H EV+ FS D S
Sbjct: 612 RPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 97 TFCSCSMDHTARIFNT 112
+CS D +I+++
Sbjct: 671 YIATCSADKKVKIWDS 686
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
QR + D+T +++ ++G ++ + H++ V AFS I T S DK +K+W S
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS 686
Query: 71 AKEECIQTYRGHSAEV 86
A + + TY HS +V
Sbjct: 687 ATGKLVHTYDEHSEQV 702
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 24 LWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
L+DI SG + GH + + FS PY + ++LW + RGH
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGH 881
Query: 83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ V GV FSPD S+F + S D T R++ T
Sbjct: 882 LSWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
+ T+ + ++ S D ++W+ ++G + + HQ V F ++L+ SFD T
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWNWQTG-DYVFLQAHQETVKD--FRLLQDSRLLSWSFDGT 1066
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W + + H V+ S D + F S S D TA+I++
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
R L+ S+D T K+W++ +G + HQ V + A S K + S DKT K+W+
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD-ATKFSSTSADKTAKIWSFD 1115
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ +GH+ V FS D + + RI+N
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 23 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
+LW+I S ++ RGH + V+ V FS P G LT S D+T+++W + K
Sbjct: 865 ELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKK 913
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++S + + S D+T K+W + +GH V AFS G + TG + +
Sbjct: 1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEI 1151
Query: 66 KLWASAKEECIQT---------YRGHSAEVVGVTFSPDQSTFCS 100
++W + + + + H V V FSPD T S
Sbjct: 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1195
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
T S D+ K+WD +G + TY H V F+ +L TGS D LKLW ++
Sbjct: 681 TCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK 740
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
EC T GH+ V FSPD SCS D T R+++
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQS 96
R H + VY FS+ G +I + DKTL+++ + E + + H EV+ FS D S
Sbjct: 619 RPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 97 TFCSCSMDHTARIFNT 112
+CS D +I+++
Sbjct: 678 YIATCSADKKVKIWDS 693
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
QR + D+T +++ ++G ++ + H++ V AFS I T S DK +K+W S
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS 693
Query: 71 AKEECIQTYRGHSAEV 86
A + + TY HS +V
Sbjct: 694 ATGKLVHTYDEHSEQV 709
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 24 LWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
L+DI SG + GH + + FS PY + ++LW + RGH
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGH 888
Query: 83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ V GV FSPD S+F + S D T R++ T
Sbjct: 889 LSWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
+ T+ + ++ S D ++W+ ++G + + HQ V F ++L+ SFD T
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWNWQTG-DYVFLQAHQETVKD--FRLLQDSRLLSWSFDGT 1073
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W + + H V+ S D + F S S D TA+I++
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
R L+ S+D T K+W++ +G + HQ V + A S K + S DKT K+W+
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD-ATKFSSTSADKTAKIWSFD 1122
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ +GH+ V FS D + + RI+N
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 23 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
+LW+I S ++ RGH + V+ V FS P G LT S D+T+++W + K
Sbjct: 872 ELWNIDSRLKVADCRGHLSWVHGVMFS-PDGSSFLTASDDQTIRVWETKK 920
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++S + + S D+T K+W + +GH V AFS G + TG + +
Sbjct: 1100 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEI 1158
Query: 66 KLWASAKEECIQTYRGHSAE---------VVGVTFSPDQSTFCS 100
++W + + + + S E V V FSPD T S
Sbjct: 1159 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1202
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 61.6 bits (148), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 60/112 (53%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++S Q L+GS+D +LWD+ +G + GH V +VAFS +I++ S D+T+
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD-NRQIVSASRDRTI 496
Query: 66 KLWASAKEECIQTY----RGHSAEVVGVTFSPD--QSTFCSCSMDHTARIFN 111
KLW + EC T GH V V FSP+ Q T S S D T +++N
Sbjct: 497 KLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 14 LTGSYDRTCKLWDIKS---GHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
++ S D++ LW + + + R GH + V V S G L+GS+D L+LW
Sbjct: 399 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLW 457
Query: 69 ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
A + + GH+ +V+ V FS D S S D T +++NT+
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTY------RGHQNVVYAVAFS-EPYGDKILTGSFDK 63
++ ++ S DRT KLW+ C Y GH++ V V FS I++ S+DK
Sbjct: 485 RQIVSASRDRTIKLWNTLGE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMD 104
T+K+W + + T GH+ V V SPD S S D
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEVVGV 89
T R H ++V A+A D I++ S DK++ LW K++ + GHS V V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
S D S S D R+++
Sbjct: 437 VLSSDGQFALSGSWDGELRLWD 458
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+R ++GS D T ++WDI++G + GH V V + G ++++G++D +K+W
Sbjct: 210 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDP 266
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
E C+ T +GH+ V + F D S S+D + R+++
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+R ++G+YD K+WD ++ + T +GH N VY++ F G +++GS D ++++W
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDV 306
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
CI T GH + G+ + S + D T +I++
Sbjct: 307 ETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWD 345
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
R ++GS D T K+W +G + T GH V++ S+ + I++GS D+TLK+W +
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS---SQMRDNIIISGSTDRTLKVWNA 186
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
ECI T GH++ V + + S S D T R+++
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWD 225
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++GS DRT K+W+ ++G I T GH + V + E ++++GS D TL++W
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETG 229
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+C+ GH A V V + D S + D ++++
Sbjct: 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++GS D + ++WD+++G+ I T GHQ++ + + + +++G+ D T+K+W
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTG 349
Query: 74 ECIQTYRGHSAEVVGVT-FSPDQSTFCSCSMDHTARIFN 111
+C+QT +G + VT +++ + S D T ++++
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWD 388
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 36 YRGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
+GH + V+ + F G++I++GS D TLK+W++ +C++T GH+ V +
Sbjct: 114 LKGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 95 QSTFCSCSMDHTARIFN 111
S S D T +++N
Sbjct: 171 --IIISGSTDRTLKVWN 185
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 14 LTGSYDRTCKLWDIKSGHEI 33
+T S D T KLWD+K+G I
Sbjct: 376 ITSSDDGTVKLWDLKTGEFI 395
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 88
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V+ V S S S D T +++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD 93
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 88
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V+ V S S S D T +++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD 93
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 88
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V+ V S S S D T +++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD 93
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 131
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 88
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V+ V S S S D T +++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD 93
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKK-ASMIISGSRDKTI 125
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 126 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 24 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 82
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V+ V S S S D T +++
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 116 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 66 TLTADGAYALSASWDKTLRLWD 87
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+T+ L+ S+D+T +LWD+ +G + GH++ V +V + I++GS DKT+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKK-ASXIISGSRDKTI 131
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSP------DQSTFCSCSMDHTARIFN 111
K+W + K +C+ T GH+ V V P D T S D + +N
Sbjct: 132 KVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 10 PQRCLTGSYDRTCKLW-----DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P L+ S D+T W D K G + +++GH ++V + G L+ S+DKT
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKT 88
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L+LW A E Q + GH ++V V S S S D T +++
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKL 67
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K
Sbjct: 122 IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + + + GH++ + +T SPD + S D ++N
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 37.0 bits (84), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEVVGV 89
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 90 TFSPDQSTFCSCSMDHTARIFN 111
T + D + S S D T R+++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD 93
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
T S D+ K+W+ +G + TY H V F+ +L TGS D LKLW ++
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQK 739
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
EC T GH+ V FSPD SCS D T ++++
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQS 96
R H + VY FSE G +I + DKTL+++ + E + + H EV+ FS D
Sbjct: 618 RPHTDAVYHACFSED-GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR 676
Query: 97 TFCSCSMDHTARIFNTM 113
+CS+D +I+N+M
Sbjct: 677 FIATCSVDKKVKIWNSM 693
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
R L+ S+D T K+W+I +G++ + HQ V + S K + S DKT K+W+
Sbjct: 1063 RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHD-ATKFSSTSADKTAKIWSFD 1121
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ RGH+ V FS D + + + RI+N
Sbjct: 1122 LLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWA 69
QR + D+T +++ ++G ++ + H++ V AFS D+ I T S DK +K+W
Sbjct: 634 QRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST--DDRFIATCSVDKKVKIWN 691
Query: 70 SAKEECIQTYRGHSAEV 86
S E + TY HS +V
Sbjct: 692 SMTGELVHTYDEHSEQV 708
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 36 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQ 95
+ GH + + FS P + ++LW + + RGH + V GV FSPD
Sbjct: 842 HTGHHSTIQYCDFS-PQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDG 900
Query: 96 STFCSCSMDHTARIFNT 112
S+F + S D T R++ T
Sbjct: 901 SSFLTSSDDQTIRLWET 917
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 23 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
+LW+ S ++ RGH + V+ V FS P G LT S D+T++LW + K
Sbjct: 871 ELWNTDSRSKVADCRGHLSWVHGVMFS-PDGSSFLTSSDDQTIRLWETKK 919
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+ +T S D TC LWDI++G + T+ GH V +++ + P ++G+ D + KLW
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 224
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ C QT+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 225 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 265
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D TC+L+D+++ E+ TY H N+ + +V+FS+ G +L G D +W +
Sbjct: 254 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 311
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
K + GH V + + D + S D +I+N
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L+ +
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRAD 269
Query: 74 ECIQTYRGHSAEVVGVT 90
+ + TY H + G+T
Sbjct: 270 QELMTY-SHDNIICGIT 285
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+ S + L G D C +WD GH N V + ++ G + TGS+D LK
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLK 348
Query: 67 LW 68
+W
Sbjct: 349 IW 350
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--------GDKILTGSFDKTLKL 67
G D C ++++K T G+ V +A Y ++I+T S D T L
Sbjct: 126 GGLDNICSIYNLK------TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + T+ GH+ +V+ ++ +PD F S + D +A++++
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+ +T S D TC LWDI++G + T+ GH V +++ + P ++G+ D + KLW
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ C QT+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D TC+L+D+++ E+ TY H N+ + +V+FS+ G +L G D +W +
Sbjct: 243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 300
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
K + GH V + + D + S D +I+N
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRAD 258
Query: 74 ECIQTYRGHSAEVVGVT 90
+ + TY H + G+T
Sbjct: 259 QELMTY-SHDNIICGIT 274
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+ S + L G D C +WD GH N V + ++ G + TGS+D LK
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLK 337
Query: 67 LW 68
+W
Sbjct: 338 IW 339
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--------GDKILTGSFDKTLKL 67
G D C ++++K T G+ V +A Y ++I+T S D T L
Sbjct: 115 GGLDNICSIYNLK------TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + T+ GH+ +V+ ++ +PD F S + D +A++++
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+ +T S D TC LWDI++G + T+ GH V +++ + P ++G+ D + KLW
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ C QT+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D TC+L+D+++ E+ TY H N+ + +V+FS+ G +L G D +W +
Sbjct: 243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 300
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
K + GH V + + D + S D +I+N
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRAD 258
Query: 74 ECIQTYRGHSAEVVGVT 90
+ + TY H + G+T
Sbjct: 259 QELMTY-SHDNIICGIT 274
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+ S + L G D C +WD GH N V + ++ G + TGS+D LK
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLK 337
Query: 67 LW 68
+W
Sbjct: 338 IW 339
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--------GDKILTGSFDKTLKL 67
G D C ++++K T G+ V +A Y ++I+T S D T L
Sbjct: 115 GGLDNICSIYNLK------TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + T+ GH+ +V+ ++ +PD F S + D +A++++
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+ +T S D TC LWDI++G + T+ GH V +++ + P ++G+ D + KLW
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ C QT+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D TC+L+D+++ E+ TY H N+ + +V+FS+ G +L G D +W +
Sbjct: 243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 300
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
K + GH V + + D + S D +I+N
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRAD 258
Query: 74 ECIQTYRGHSAEVVGVT 90
+ + TY H + G+T
Sbjct: 259 QELMTY-SHDNIICGIT 274
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+ S + L G D C +WD GH N V + ++ G + TGS+D LK
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLK 337
Query: 67 LW 68
+W
Sbjct: 338 IW 339
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--------GDKILTGSFDKTLKL 67
G D C ++++K T G+ V +A Y ++I+T S D T L
Sbjct: 115 GGLDNICSIYNLK------TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + T+ GH+ +V+ ++ +PD F S + D +A++++
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T RGH +YA+ + +L+ S D L +W S + S+ V+ ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 95 QSTFCSCSMDHTARIFN 111
+ +D+ I+N
Sbjct: 109 GNYVACGGLDNICSIYN 125
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+ +T S D TC LWDI++G + T+ GH V +++ + P ++G+ D + KLW
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFVSGACDASAKLWDV 213
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ C QT+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 214 REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D TC+L+D+++ E+ TY H N+ + +V+FS+ G +L G D +W +
Sbjct: 243 TGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDAL 300
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
K + GH V + + D + S D +I+N
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L+ +
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRAD 258
Query: 74 ECIQTYRGHSAEVVGVT 90
+ + TY H + G+T
Sbjct: 259 QELMTY-SHDNIICGIT 274
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+ S + L G D C +WD GH N V + ++ G + TGS+D LK
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD-GMAVATGSWDSFLK 337
Query: 67 LW 68
+W
Sbjct: 338 IW 339
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY--------GDKILTGSFDKTLKL 67
G D C ++++K T G+ V +A Y ++I+T S D T L
Sbjct: 115 GGLDNICSIYNLK------TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W + T+ GH+ +V+ ++ +PD F S + D +A++++
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T RGH +YA+ + +L+ S D L +W S + S+ V+ ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 95 QSTFCSCSMDHTARIFN 111
+ +D+ I+N
Sbjct: 109 GNYVACGGLDNICSIYN 125
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
TG+ DR ++WDI++ + +GH+ +Y++ + P GDK+++GS D+T+++W +
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQ 198
Query: 75 CIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFNT 112
C T V V SP D + S+D R++++
Sbjct: 199 CSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S + ++GS DRT ++WD+++G T ++ V VA S G I GS D+ +++W
Sbjct: 176 SGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 69 ASAKEECIQTYR-------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S ++ GH V V F+ D + S S+D + +++N
Sbjct: 235 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 19/122 (15%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEI------------CTYRGHQNVVYAVAFSEPYGD 54
T Q ++GS DR+ KLW++++ + TY GH++ V +VA ++ +
Sbjct: 265 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDE 323
Query: 55 KILTGSFDKTLKLWASAKEECIQTYRGHSAEVV------GVTFSPDQSTFCSCSMDHTAR 108
IL+GS D+ + W + +GH V+ G + P+ + F + S D AR
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 109 IF 110
I+
Sbjct: 384 IW 385
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-----PYGDKILTGSF 61
T + + L+GS DR WD KSG+ + +GH+N V +VA + P + TGS
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG 378
Query: 62 DKTLKLWASAK 72
D ++W K
Sbjct: 379 DCKARIWKYKK 389
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+ +V FS P G + TG+ D+ +++W + + +GH ++ + + P S S
Sbjct: 126 IRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 103 MDHTARIFN 111
D T RI++
Sbjct: 185 GDRTVRIWD 193
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 19 DRTCKLWDIKSGHEICTY---RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-- 73
DR ++W + IC GHQ V VA+S P G+ + + SFD T +W ++
Sbjct: 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS-PCGNYLASASFDATTCIWKKNQDDF 95
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
EC+ T GH EV V ++P + +CS D + ++
Sbjct: 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 15 TGSYDRTCKLWDIKSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
T S D++ +W++ E + H V V + P + + + S+D T+KL+
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-HPSQELLASASYDDTVKLYREE 180
Query: 72 KEE--CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+++ C T GH + V + F P SCS D T RI+
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 5 RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
+VT +P R + GS D ++++ +G ++ + H + + ++A ++PY
Sbjct: 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53 GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
+L+GS D T+KLW + QT+ GH V+ V F+P D STF S +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 111 N 111
+
Sbjct: 169 S 169
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 10 PQRCLTGSYDRTCKLWDI---------KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
P +G DRT K+W + +G E RG V Y +PY ++T S
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPY---MITAS 205
Query: 61 FDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
D T+K+W + C+ T GH + V F P S S D T +I+N+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 14 LTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA--- 69
L+GS D T KLW+ ++ + T+ GH++ V VAF+ +G D+T+K+W+
Sbjct: 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Query: 70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S + T + V PD+ + S D T +I++
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
+T S D T K+WD ++ + T GH NV +AV P I++GS D TLK+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSS 258
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 5 RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
+VT +P R + GS D ++++ +G ++ + H + + ++A ++PY
Sbjct: 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53 GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
+L+GS D T+KLW + QT+ GH V+ V F+P D STF S +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTY-----RGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P +G DRT K+W + T RG V Y +PY ++T S D T
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY---MITASDDLT 209
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+K+W + C+ T GH + V F P S S D T +I+N+
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 13 CLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA-- 69
L+GS D T KLW+ ++ + T+ GH++ V VAF+ +G D+T+K+W+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 70 -SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S + T + V PD+ + S D T +I++
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
+T S D T K+WD ++ + T GH NV +AV P I++GS D TLK+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSST 259
Query: 73 EECIQT 78
+ +T
Sbjct: 260 YKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 5 RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
+VT +P R + GS D ++++ +G ++ + H + + ++A ++PY
Sbjct: 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53 GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
+L+GS D T+KLW + QT+ GH V+ V F+P D STF S +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTY-----RGHQNVVYAVAFSEPYGDKILTGSFDKT 64
P +G DRT K+W + T RG V Y +PY ++T S D T
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY---MITASDDLT 209
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+K+W + C+ T GH + V F P S S D T +I+N+
Sbjct: 210 IKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 13 CLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA-- 69
L+GS D T KLW+ ++ + T+ GH++ V VAF+ +G D+T+K+W+
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 70 -SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S + T + V PD+ + S D T +I++
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
+T S D T K+WD ++ + T GH NV +AV P I++GS D TLK+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSST 259
Query: 73 EECIQT 78
+ +T
Sbjct: 260 YKVEKT 265
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 5 RVTSSPQRC----------LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPY 52
+VT +P R + GS D ++++ +G ++ + H + + ++A ++PY
Sbjct: 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY 111
Query: 53 GDKILTGSFDKTLKLWASAKEECI-QTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIF 110
+L+GS D T+KLW + QT+ GH V+ V F+P D STF S +D T +++
Sbjct: 112 ---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW 168
Query: 111 N 111
+
Sbjct: 169 S 169
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 10 PQRCLTGSYDRTCKLWDI---------KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
P +G DRT K+W + +G E RG V Y +PY ++T S
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPY---MITAS 205
Query: 61 FDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
D T+K+W + C+ T GH + V F P S S D T +I+N+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 14 LTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA--- 69
L+GS D T KLW+ ++ + T+ GH++ V VAF+ +G D+T+K+W+
Sbjct: 113 LSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172
Query: 70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S + T + V PD+ + S D T +I++
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
+T S D T K+WD ++ + T GH NV +AV P I++GS D TLK+W S+
Sbjct: 202 ITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIIISGSEDGTLKIWNSS 258
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 10/102 (9%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY---AVAFSEPYGDKILTGSFDKTLKLWA 69
++GS+D+T K+W K G + + H V+ V+FSE +K LT S DKT+KLW
Sbjct: 117 VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE---NKFLTASADKTIKLWQ 171
Query: 70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ K I+T+ G +VV D F SCS D ++ +
Sbjct: 172 NDK--VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVD 211
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKT 64
V+ S + LT S D+T KLW ++ I T+ G H +VV +A + ++ S D
Sbjct: 151 VSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDD--GHFISCSNDGL 206
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+KL + ++TY GH + V + P+ SC D T RI++
Sbjct: 207 IKLVDXHTGDVLRTYEGHESFVYCIKLLPN-GDIVSCGEDRTVRIWS 252
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG---VTF 91
T GHQ V +++F + +++GS+DKT K+W + + H+A V V+F
Sbjct: 99 TLIGHQGNVCSLSFQDGV---VISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSF 153
Query: 92 SPDQSTFCSCSMDHTARIFNT 112
S ++ F + S D T +++
Sbjct: 154 SENK--FLTASADKTIKLWQN 172
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEI--CTY-------RGHQNVVYAVAFSEP 51
+ P+ + + ++ S D+T W C+Y GH V VA S
Sbjct: 19 LACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSN- 77
Query: 52 YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
G+ ++ S+D +L+LW +C + GH+ +V+ V FSPD S D+ R++N
Sbjct: 78 NGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWN 137
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDK--ILTGSFDKTLKL 67
++ ++G D ++W++K RG H + V V FS P D I++G +D +K+
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS-PSLDAPVIVSGGWDNLVKV 180
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
W A + +GH+ V VT SPD S S D AR+++
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 14/109 (12%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW----- 68
++GS D T +LWDI+ G + GH+ +V + F +I++G++D +K+W
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLVAA 366
Query: 69 ----ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
A A C++T HS V + F D+ S S D T I++ +
Sbjct: 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 8/101 (7%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
+T S DR+ +WD+ S +I R GH+ V V F + Y I++ S D+T+K+W +
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNT 283
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ E ++T GH + + + S S D+T R+++
Sbjct: 284 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD 322
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
Q+ ++G D T K+WD + GH V + + E I+TGS D T+++W
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV---IITGSSDSTVRVWDV 200
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
E + T H V+ + F + +CS D + +++
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWD 239
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++ S DRT K+W+ + + T GH+ + + + + +++GS D T++LW
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIECG 326
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
C++ GH V + F D S + D ++++ +
Sbjct: 327 ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV 364
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
VY + + + KI++G D T+K+W EC + GH+ V+ + + D+ + S
Sbjct: 136 VYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS 190
Query: 103 MDHTARIFNT 112
D T R+++
Sbjct: 191 SDSTVRVWDV 200
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 12/67 (17%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHE-------IC--TYRGHQNVVYAVAFSEPYGDKILTGSF 61
+R ++G+YD K+WD+ + + +C T H V+ + F E +I++ S
Sbjct: 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSH 403
Query: 62 DKTLKLW 68
D T+ +W
Sbjct: 404 DDTILIW 410
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 13 CLTGSYDRTCKLWDI----KSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTL 65
++GS D+T +W + ++G+ ++ GH + V +A S+ I + S+DKTL
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI-SSSWDKTL 100
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+LW + + GH +EV V FSPD S + +++N +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Score = 33.5 bits (75), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 18 YDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 76
+D K+W+ + +I T++ H++ V ++ S P G I TG DK L +W
Sbjct: 192 WDGRLKVWN--TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYP 248
Query: 77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
Q + + + F+P + + + D +IFN M
Sbjct: 249 QREFDAGSTINQIAFNP-KLQWVAVGTDQGVKIFNLM 284
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 37 RGHQNVVYAV--AFSEPYGDK---ILTGSFDKTLKLWASAKEECI-------QTYRGHSA 84
GH + V ++ FS+ + +++GS DKT+ +W +EE + GH+
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77
Query: 85 EVVGVTFSPDQSTFCSCSMDHTARIFN 111
V + S + S S D T R+++
Sbjct: 78 FVSDLALSQENCFAISSSWDKTLRLWD 104
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 15 TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
TGS DR KL +K ++ H+ + +VA+ P+ + GSFD T+ +WA
Sbjct: 29 TGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPHTSLLAAGSFDSTVSIWAK 87
Query: 71 AKE-------ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ + + GH EV GV +S D +CS D + I+ T
Sbjct: 88 EESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 2 GVPRVTSSPQRCL--TGSYDRTCKLWDIKSGHE-------ICTYRGHQNVVYAVAFSEPY 52
+ V P L GS+D T +W + + + GH+N V VA+S
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND- 118
Query: 53 GDKILTGSFDKTLKLWASAKE----ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTAR 108
G + T S DK++ +W + + ECI + HS +V V + P ++ S S D T R
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVR 178
Query: 109 IF 110
I+
Sbjct: 179 IW 180
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 17 SYDRTCKLWDI-KSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
S D++ +W+ +SG E I + H V V + P + + S+D T+++W
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW-HPSEALLASSSYDDTVRIWKDYD 184
Query: 73 E--ECIQTYRGHSAEVVGVTFSPDQSTF--CSCSMDHTARIFNTM 113
+ EC+ GH V F + F CS S D T R++ M
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 14 LTGSYDRTCKLWDIKSGHEI-----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
L S +LW++ + C Y H ++V V+ G + ++GS D +K+W
Sbjct: 97 LVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLS-SGTQAVSGSKDICIKVW 154
Query: 69 ASAKEECIQTYRGHSAEVVGVTFSPDQ-STFCSCSMDHTARIFNT 112
A++ + +YR H+A+V V SP + S F SCS D+ +++T
Sbjct: 155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKT 64
V SS + ++GS D K+WD+ + +YR H V VA S P+ D + L+ S D
Sbjct: 135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS-PHKDSVFLSCSEDNR 193
Query: 65 LKLW 68
+ LW
Sbjct: 194 ILLW 197
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAK 72
++GS DRT ++WDIK G + GH + V + E K I+TGS D TL +W K
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTF 98
E + + G + V +P+++ +
Sbjct: 237 ESSVPDH-GEEHDYPLVFHTPEENPY 261
Score = 47.0 bits (110), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQS 96
RGH V V+ +G+ +++GS+D TL +W A+ +C+ GH+ + + ++
Sbjct: 267 RGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK 323
Query: 97 TFCSCSMDHTARIFN 111
S SMD T RI++
Sbjct: 324 RCISASMDTTIRIWD 338
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++GSYD T +WD+ + GH + +Y+ + + ++ S D T+++W
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENG 342
Query: 74 ECIQTYRGHSAEV 86
E + T +GH+A V
Sbjct: 343 ELMYTLQGHTALV 355
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
+TG+ D+ +++D + + GH V+A+ ++ +G +++GS D+T+++W K
Sbjct: 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKG 193
Query: 74 ECIQTYRGHSAEV 86
C + GH++ V
Sbjct: 194 CCTHVFEGHNSTV 206
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+RC++ S D T ++WD+++G + T +GH +V + S+ + +++ + D +++ W
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGW 377
Score = 31.6 bits (70), Expect = 0.11, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 35 TYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSP 93
T RGH +V+ + F + Y ++TG+ DK ++++ S ++ + GH V + ++
Sbjct: 116 TLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA- 171
Query: 94 DQSTFCSCSMDHTARIFN 111
S S D T R+++
Sbjct: 172 HGGILVSGSTDRTVRVWD 189
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAK 72
++GS DRT ++WDIK G + GH + V + E K I+TGS D TL +W K
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTF 98
E + + G + V +P+++ +
Sbjct: 237 ESSVPDH-GEEHDYPLVFHTPEENPY 261
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQS 96
RGH V V+ +G+ +++GS+D TL +W A+ +C+ GH+ + + ++
Sbjct: 267 RGHXASVRTVS---GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERK 323
Query: 97 TFCSCSMDHTARIFN 111
S S D T RI++
Sbjct: 324 RCISASXDTTIRIWD 338
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
++GSYD T +WD+ + GH + +Y+ + + ++ S D T+++W
Sbjct: 284 VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHER-KRCISASXDTTIRIWDLENG 342
Query: 74 ECIQTYRGHSAEV 86
E T +GH+A V
Sbjct: 343 ELXYTLQGHTALV 355
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
+TG+ D+ +++D + + GH V+A+ ++ +G +++GS D+T+++W K
Sbjct: 136 ITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKG 193
Query: 74 ECIQTYRGHSAEV 86
C + GH++ V
Sbjct: 194 CCTHVFEGHNSTV 206
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+RC++ S D T ++WD+++G T +GH +V + S+ + +++ + D +++ W
Sbjct: 323 KRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGW 377
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 35 TYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSP 93
T RGH +V+ + F + Y ++TG+ DK ++++ S ++ + GH V + ++
Sbjct: 116 TLRGHXTSVITCLQFEDNY---VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA- 171
Query: 94 DQSTFCSCSMDHTARIFN 111
S S D T R+++
Sbjct: 172 HGGILVSGSTDRTVRVWD 189
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 12 RCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLW 68
R T S DR+ K++D+++G + I RGH+ V+ VA++ P YG+ + + S+D+ + +W
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 69 --ASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSC 101
+ E + GH + V V ++P D +C
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
G+ DR ++W++ SG + H V ++ +S Y + I F + L +W
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 275
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+ +GH++ V+ +T SPD +T S + D T R++
Sbjct: 276 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
E + T GHS EV G+ ++PD S D+ ++
Sbjct: 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
G+ DR ++W++ SG + H V ++ +S Y + I F + L +W
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 355
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+ +GH++ V+ +T SPD +T S + D T R++
Sbjct: 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
E + T GHS EV G+ ++PD S D+ ++
Sbjct: 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT-LKLWASAKEE 74
G+ DR ++W++ SG + H V ++ +S Y + I F + L +W
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQLVIWKYPTMA 366
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
+ +GH++ V+ +T SPD +T S + D T R++
Sbjct: 367 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
E + T GHS EV G+ ++PD S D+ ++
Sbjct: 231 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ T+ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETILASSGTDRRLNVWDLSK 351
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +I+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A KE I + GHSA V V
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
+ +S F S + D I++T
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDT 259
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 14 LTGSYDRTCKLWDIKSGHE-------ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
L+ S D T LWDI +G + + GH VV VA+ + + + D+ L
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 67 LW---ASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFN 111
+W ++ + H+AEV ++F+P + + S D T +++
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ T+ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 293 TGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS-PHNETILASSGTDRRLNVWDLSK 351
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +I+
Sbjct: 352 IGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 31.6 bits (70), Expect = 0.12, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A KE I + GHSA V V
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
+ +S F S + D I++T
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDT 259
Score = 30.8 bits (68), Expect = 0.22, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 14 LTGSYDRTCKLWDIKSGHE-------ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
L+ S D T LWDI +G + + GH VV VA+ + + + D+ L
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 67 LW---ASAKEECIQTYRGHSAEVVGVTFSP-DQSTFCSCSMDHTARIFN 111
+W ++ + H+AEV ++F+P + + S D T +++
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
Q TG++ ++ ++SG + + + ++A+S P G + +G+ D + ++
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS-PDGKYLASGAIDGIINIFDI 193
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
A + + T GH+ + +TFSPD + S D +I++
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+G+ D ++DI +G + T GH + ++ FS P ++T S D +K++
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHAN 239
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTF 98
T GH++ V+ V F PD + F
Sbjct: 240 LAGTLSGHASWVLNVAFCPDDTHF 263
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 1 MGVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
M + +T SP Q +T S D K++D++ + T GH + V VAF P ++
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC-PDDTHFVS 265
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S DK++K+W C+ T+ H +V GV ++ + S S D I++
Sbjct: 266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 37 RGHQNVVYAVAFS---EPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVVGVTF 91
+ H + +++VA+ + + ++TGS D +K+W E + + GH VV V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 92 SPDQSTFCSCSMDHTARIFN 111
S S S+D R+++
Sbjct: 89 SHTLPIAASSSLDAHIRLWD 108
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ ++ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLNVWDLSK 349
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +++
Sbjct: 350 IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 19 DRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEE 74
D+ +WD +S + + H V ++F+ PY + IL TGS DKT+ LW +
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK 307
Query: 75 C-IQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+ ++ H E+ V +SP T + S
Sbjct: 308 LKLHSFESHKDEIFQVQWSPHNETILASS 336
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKE----ECIQTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A KE + + GH+A V V
Sbjct: 174 RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 233
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
++ +S F S + D I++T
Sbjct: 234 SWHLLHESLFGSVADDQKLMIWDT 257
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ ++ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 353
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +++
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 19 DRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEE 74
D+ +WD ++ + T H V ++F+ PY + IL TGS DKT+ LW +
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK 311
Query: 75 C-IQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+ ++ H E+ V +SP T + S
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASS 340
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V V
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
+ +S F S + D I++T
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDT 261
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ ++ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 357
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +++
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 19 DRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEE 74
D+ +WD ++ + T H V ++F+ PY + IL TGS DKT+ LW +
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK 315
Query: 75 C-IQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+ ++ H E+ V +SP T + S
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASS 344
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V V
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
+ +S F S + D I++T
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDT 265
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 15 TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK 72
TGS D+T LWD+++ ++ ++ H++ ++ V +S P+ + IL S D+ L +W +K
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLSK 355
Query: 73 --------------EECIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDHTARIF 110
E + + GH+A++ +++P++ CS S D+ +++
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 19 DRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEE 74
D+ +WD ++ + T H V ++F+ PY + IL TGS DKT+ LW +
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLK 313
Query: 75 C-IQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+ ++ H E+ V +SP T + S
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASS 342
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVVGV 89
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V V
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 90 TFS-PDQSTFCSCSMDHTARIFNT 112
+ +S F S + D I++T
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDT 263
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
S P R ++GS D T +++ T+ H V++V ++ P G + D T+ L
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVL 216
Query: 68 WASAKEECIQTYR-------GHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + HS V G+T+SPD + S S D T +I+N
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 39 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT--YRGHSAEVVGVTFSPDQS 96
H + +VAFS + T K + + E T + H+A+V V++SPD
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 97 TFCSCSMDHTARIFN 111
+ S+D++ ++N
Sbjct: 550 RLATGSLDNSVIVWN 564
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S + ++ S D K+W +K G T GH+ V +A + G +L+ S D T++LW
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLW 205
Query: 69 ASAKEECIQTY 79
I T+
Sbjct: 206 ECGTGTTIHTF 216
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 51 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
P G+ +++ S D LK+W+ +T GH A V + S S+D T R++
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S + ++ S D K+W +K G T GH+ V +A + G +L+ S D T++LW
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLW 208
Query: 69 ASAKEECIQTY 79
I T+
Sbjct: 209 ECGTGTTIHTF 219
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 51 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
P G+ +++ S D LK+W+ +T GH A V + S S+D T R++
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 12 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+ T S D+T K+WD+ S I + V P ++TGS+DKTLK W
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 14 LTGSYDRTCKLWDIK-SGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
+ GS+ + W+++ SG I + H V V +S+ G K+ T S DKT K+W +
Sbjct: 58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWDLS 116
Query: 72 KEECIQTYRGHSAEVVGVTF--SPDQSTFCSCSMDHTARIFNT 112
+ IQ + H A V + + +P+ S + S D T + ++T
Sbjct: 117 SNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQ-----NVVYAVA 47
+TGS+D+T K WD +S + + + + +V+Y +A
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMA 183
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGV 89
I Y GH N + + F + +L+ S D L+LW + + + GH EV+
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 90 TFSPDQSTFCSCSMDHTARIF 110
+ SC MDH+ +++
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLW 224
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGV 89
I Y GH N + + F + +L+ S D L+LW + + + GH EV+
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 90 TFSPDQSTFCSCSMDHTARIF 110
+ SC MDH+ +++
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLW 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
Y GH N + + F + +L+ S D L+LW + + + GH EV+ +
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 93 PDQSTFCSCSMDHTARIF 110
SC MDH+ +++
Sbjct: 171 LLGEKIMSCGMDHSLKLW 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
Y GH N + + F + +L+ S D L+LW + + + GH EV+ +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 93 PDQSTFCSCSMDHTARIF 110
SC MDH+ +++
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 36 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVVGVTFS 92
Y GH N + + F + +L+ S D L+LW + + + GH EV+ +
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 93 PDQSTFCSCSMDHTARIF 110
SC MDH+ +++
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVA-FSEPYGDKILTGSFDK 63
S + L S +LW+I + + H ++V ++ FS+ G + ++G D
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD--GTQAVSGGKDF 161
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST-FCSCSMDHTARIFNT 112
++K+W +++ +++Y HS+EV V P + T F SC D +++T
Sbjct: 162 SVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 9 SPQRCLT--GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
S + CL G+ +L D+KSG +GH+ + AV++S Y + T S D +K
Sbjct: 153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212
Query: 67 LW---------------ASAKEECIQTYR-GHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
LW K + +++ H+ +V G+ F+ D + D+ R++
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272
Query: 111 NT 112
N+
Sbjct: 273 NS 274
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST 97
GH + + F++ +L+ S D TL++W + GHS +V ++ D
Sbjct: 245 GHHGPISVLEFNDT-NKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 98 FCSCSMDHTARIFN 111
SCSMD + R+++
Sbjct: 304 I-SCSMDGSVRLWS 316
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
L+ S D T ++W +G+ + GH Q++V A + DK+++ S D +++LW+ +
Sbjct: 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD---DKVISCSMDGSVRLWSLKQ 319
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + S D + MD +++
Sbjct: 320 NTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLK 66
SS Q D+ W++ ++R H + + A+ ++ P YG I + S+DKT+K
Sbjct: 28 SSDQHIKVFKLDKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 82
Query: 67 LWAS--AKEEC 75
LW +EEC
Sbjct: 83 LWEEDPDQEEC 93
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 15 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 64
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 74 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 133
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPD---QSTFC 99
L+L+ + + ++++ ++E+ ++ P QS FC
Sbjct: 134 LRLYDALEPSDLRSWT-LTSEMKVLSIPPANHLQSDFC 170
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLK 66
SS Q D+ W++ ++R H + + A+ ++ P YG I + S+DKT+K
Sbjct: 30 SSDQHIKVFKLDKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 67 LWAS--AKEEC 75
LW +EEC
Sbjct: 85 LWEEDPDQEEC 95
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 15 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 64
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPD---QSTFC 99
L+L+ + + ++++ ++E+ ++ P QS FC
Sbjct: 136 LRLYDALEPSDLRSWT-LTSEMKVLSIPPANHLQSDFC 172
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLK 66
SS Q D+ W++ ++R H + + A+ ++ P YG I + S+DKT+K
Sbjct: 30 SSDQHIKVFKLDKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 67 LWAS--AKEEC 75
LW +EEC
Sbjct: 85 LWEEDPDQEEC 95
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 15 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 64
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPD---QSTFC 99
L+L+ + + ++++ S V ++ P QS FC
Sbjct: 136 LRLYDALEPSDLRSWTLTSEXKV-LSIPPANHLQSDFC 172
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 76
S D + +W +G + T GH ++++ + + +TGS D ++KLW + +C+
Sbjct: 51 SKDSSASVWYSLNGERLGTLDGHTGTIWSIDV-DCFTKYCVTGSADYSIKLWDVSNGQCV 109
Query: 77 QTYRGHSAEVVGVTFSP 93
T++ V V FSP
Sbjct: 110 ATWKS-PVPVKRVEFSP 125
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYR 37
C+TGS D + KLWD+ +G + T++
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWK 113
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 32.7 bits (73), Expect = 0.054, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT---GSFDKTLKLWASA 71
+G D ++WD +S T H V AVA+ P+ +L G+ DK + W +A
Sbjct: 234 SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAA 292
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCS 100
+ T S +V + +SP S
Sbjct: 293 TGARVNTVDAGS-QVTSLIWSPHSKEIMS 320
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 29 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVG 88
+ H+I T +GH + V +A+ G ++ +G D +++W + T H+A V
Sbjct: 206 ANHQIGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 89 VTFSPDQSTFCSC---SMDHTARIFN 111
V + P QS + +MD +N
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWN 290
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKT 64
V++S + +TG L ++ G E+ R H+ V VA + P D L T S D+T
Sbjct: 217 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALN-PCCDWFLATASVDQT 274
Query: 65 LKLWASAKEECIQTY---RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W + ++ H V FSPD + + R+++
Sbjct: 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKT 64
V++S + +TG L ++ G E+ R H+ V VA + P D L T S D+T
Sbjct: 217 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALN-PCCDWFLATASVDQT 274
Query: 65 LKLWASAKEECIQTY---RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W + ++ H V FSPD + + R+++
Sbjct: 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKT 64
V++S + +TG L ++ G E+ R H+ V VA + P D L T S D+T
Sbjct: 218 VSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKVTHVALN-PCCDWFLATASVDQT 275
Query: 65 LKLWASAKEECIQTY---RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W + ++ H V FSPD + + R+++
Sbjct: 276 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 7 TSSPQRCL-TGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPY-----GDKILTG 59
TS QR L TG + +W++++ + + +GH+ ++ A+ +I+TG
Sbjct: 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG 135
Query: 60 SFDKTLKLW 68
S D T+K+W
Sbjct: 136 SRDGTVKVW 144
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 504 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 552
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|1SR8|A Chain A, Structural Genomics, 1.9a Crystal Structure Of Cobalamin
Biosynthesis Protein (Cbid) From Archaeoglobus Fulgidus
Length = 298
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 39 HQNVVYAVAFSEPY---GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQ 95
+Q V+ V E G+KI+ G F LK+WA +++ + R VV + D
Sbjct: 230 YQPFVFGVHIDEALKHPGEKIIVG-FPGLLKIWAGSRDRIEERAREEGVRVVVIEDDMDS 288
Query: 96 STFCSCSMDH 105
+ DH
Sbjct: 289 WVWDVQGTDH 298
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 15 TGSYDRTCKLWDIKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
TG D +WD++ G + + H+ ++ V F + + T S D +L W ++ +
Sbjct: 254 TGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
>pdb|3ACZ|A Chain A, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|B Chain B, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|C Chain C, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3ACZ|D Chain D, Crystal Structure Of Entamoeba Histolytica Methionine
Gamma-Lyase 1
pdb|3AEJ|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEM|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
Length = 389
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
L + TCK+ DIK +C RG + VV A F+ P F K L+L A
Sbjct: 150 LESPANPTCKVSDIKGIAVVCHERGARLVVDAT-FTSP--------CFLKPLELGADIAL 200
Query: 74 ECIQTYRGHSAEVVG 88
+ Y +V+G
Sbjct: 201 HSVSXYINGHGDVIG 215
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 52 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVVGVTFSPDQ--STFCSCSMD 104
YG ++ T S DKT+K++ E + I T GH V V ++ + + SCS D
Sbjct: 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 82
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVVGVT 90
+ H +++ A + YG ++ T S DKT+K++ E + I T GH V V
Sbjct: 2 VVIANAHNEMIHD-AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 91 FSPDQ--STFCSCSMDHTARIF 110
++ + + SCS D I+
Sbjct: 61 WAHPKFGTILASCSYDGKVMIW 82
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVVGVT 90
+ H +++ A + YG ++ T S DKT+K++ E + I T GH V V
Sbjct: 2 VVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 91 FSPDQ--STFCSCSMDHTARIF 110
++ + + SCS D I+
Sbjct: 61 WAHPKFGTILASCSYDGKVLIW 82
>pdb|3AEJ|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEJ|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Tetramer Containing Michaelis
Complex And Methionine- Pyridoxal-5'-Phosphate
pdb|3AEL|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEL|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine
Imine-Pyridoxamine-5'-Phosphate And Alpha-Amino-Alpha,
Beta-Butenoic Acid-Pyridoxal-5'-Phosphate
pdb|3AEM|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEM|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Methionine Imine- Pyridoxamine-5'-Phosphate
pdb|3AEN|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEN|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Michaelis Complex
And Alpha-Amino-Alpha, Beta-Butenoic
Acid-Pyridoxal-5'-Phosphate
pdb|3AEO|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEO|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Methionine Alpha,
Beta-Enamine-Pyridoxamine- 5'-Phosphate
pdb|3AEP|A Chain A, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|B Chain B, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|C Chain C, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
pdb|3AEP|D Chain D, Reaction Intermediate Structure Of Entamoeba Histolytica
Methionine Gamma-Lyase 1 Containing Alpha-Amino-Alpha,
Beta-Butenoic Acid- Pyridoxal-5'-Phosphate
Length = 389
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 73
L + TCK+ DIK +C RG + VV A F+ P F K L+L A
Sbjct: 150 LESPANPTCKVSDIKGIAVVCHERGARLVVDAT-FTSP--------CFLKPLELGADIAL 200
Query: 74 ECIQTYRGHSAEVVG 88
+ Y +V+G
Sbjct: 201 HSVSKYINGHGDVIG 215
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 30 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVV 87
G + H +++ A + YG ++ T S DKT+K++ E + I T GH V
Sbjct: 1 GSMVVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW 59
Query: 88 GVTFSPDQ--STFCSCSMD 104
V ++ + + SCS D
Sbjct: 60 RVDWAHPKFGTILASCSYD 78
>pdb|1O94|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|C Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|E Chain E, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O96|A Chain A, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|C Chain C, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|E Chain E, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O96|Q Chain Q, Structure Of Electron Transferring Flavoprotein For
Methylophilus Methylotrophus.
pdb|1O97|C Chain C, Structure Of Electron Transferring Flavoprotein From
Methylophilus Methylotrophus, Recognition Loop Removed
By Limited Proteolysis
pdb|3CLR|C Chain C, Crystal Structure Of The R236a Etf Mutant From M.
Methylotrophus
pdb|3CLS|C Chain C, Crystal Structure Of The R236c Mutant Of Etf From
Methylophilus Methylotrophus
pdb|3CLT|C Chain C, Crystal Structure Of The R236e Mutant Of Methylophilus
Methylotrophus Etf
pdb|3CLU|C Chain C, Crystal Structure Of The R236k Mutant From Methylophilus
Methylotrophus Etf
Length = 264
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 2 GVPRVTSSPQRCLTGSYDRTCKLWD 26
G RV S ++CL DR ++WD
Sbjct: 65 GPDRVDESLRKCLAKGADRAVRVWD 89
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 47 AFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEVVGVTFSPDQ--STFCSCS 102
A + YG + T S DKT+K++ E + I T GH V V ++ + + SCS
Sbjct: 15 AVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 103 MDHTARIF 110
D I+
Sbjct: 75 YDGKVXIW 82
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD--KILTGSFDKTLK 66
S + +T DR +D KSG + Q V F+ + D K T D T++
Sbjct: 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 67 LWASAKEECIQTYRGHSAEV----VGVTFSPDQSTFCSCSMDHTARIF 110
+W +C+Q + ++ VGV + S S+D T +
Sbjct: 278 VWDVTTSKCVQKWTLDKQQLGNQQVGVV-ATGNGRIISLSLDGTLNFY 324
>pdb|1Q3U|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3U|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Pre-Cleavage Complex
pdb|1Q3V|A Chain A, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|B Chain B, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|E Chain E, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
pdb|1Q3V|F Chain F, Crystal Structure Of A Wild-Type Cre Recombinase-Loxp
Synapse: Phosphotyrosine Covalent Intermediate
Length = 347
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 245 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 297
>pdb|3CRX|A Chain A, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
pdb|3CRX|B Chain B, Cre RecombinaseDNA COMPLEX INTERMEDIATE I
Length = 343
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 293
>pdb|1KBU|A Chain A, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1KBU|B Chain B, Cre Recombinase Bound To A Loxp Holliday Junction
pdb|1MA7|A Chain A, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
pdb|1MA7|B Chain B, Crystal Structure Of Cre Site-Specific Recombinase
Complexed With A Mutant Dna Substrate, Loxp-A8T27
Length = 349
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 247 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 299
>pdb|2CRX|A Chain A, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|2CRX|B Chain B, Structure Of The Holliday Junction Intermediate In
Cre-Loxp Site-Specific Recombination
pdb|1NZB|A Chain A, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|B Chain B, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|E Chain E, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1NZB|F Chain F, Crystal Structure Of Wild Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|A Chain A, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|B Chain B, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|E Chain E, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|1OUQ|F Chain F, Crystal Structure Of Wild-Type Cre Recombinase-Loxp
Synapse
pdb|3MGV|A Chain A, Cre Recombinase-Dna Transition State
pdb|3MGV|B Chain B, Cre Recombinase-Dna Transition State
pdb|3MGV|C Chain C, Cre Recombinase-Dna Transition State
pdb|3MGV|D Chain D, Cre Recombinase-Dna Transition State
Length = 343
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 293
>pdb|5CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|5CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 343
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 293
>pdb|2HOF|A Chain A, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOF|B Chain B, Crystal Structure Of The Pre-Cleavage Synaptic Complex In
The Cre-Loxp Site-Specific Recombination
pdb|2HOI|A Chain A, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|B Chain B, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|G Chain G, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
pdb|2HOI|H Chain H, Crystal Structure Of The Tetrameric Pre-Cleavage Synaptic
Complex In The Cre-Loxp Site-Specific Recombination
Length = 343
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 241 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 293
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD--KILTGSFDKTLKLWASA 71
+T DR +D KSG + Q V F+ + D K T D T+++W
Sbjct: 223 ITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT 282
Query: 72 KEECIQTY 79
+C+Q +
Sbjct: 283 TSKCVQKW 290
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 15 TGS-YDRTCKLWDIKSGHEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 71
TGS D + +WD+++ + +GHQ + ++ + +L+ D T+ LW
Sbjct: 234 TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
E + + F+P+ +C+
Sbjct: 294 SAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
L+ D T LW+ +S ++ + N + F+ D SFD +++
Sbjct: 279 LSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-SulfoquinovoseUDP-Glucose
pdb|1I2C|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex
With Nad And Udp-Glucose
Length = 404
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR 80
TCK W I++ +Q VVY V E + L D + C+Q
Sbjct: 206 TCKAWGIRATDL------NQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAV 259
Query: 81 GHSAEVVG 88
GH V G
Sbjct: 260 GHPLTVYG 267
>pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein
Sqd1, With Nad And Udp-Glucose
Length = 404
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR 80
TCK W I++ +Q VVY V E + L D + C+Q
Sbjct: 206 TCKAWGIRATDL------NQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAV 259
Query: 81 GHSAEVVG 88
GH V G
Sbjct: 260 GHPLTVYG 267
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR 80
TCK W I++ +Q VVY V E + L D + C+Q
Sbjct: 196 TCKAWGIRATDL------NQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAV 249
Query: 81 GHSAEVVG 88
GH V G
Sbjct: 250 GHPLTVYG 257
>pdb|1F44|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 324
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 274
>pdb|1XO0|A Chain A, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
pdb|1XO0|B Chain B, High Resolution Structure Of The Holliday Junction
Intermediate In Cre-Loxp Site-Specific Recombination
Length = 324
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 274
>pdb|1XNS|A Chain A, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
pdb|1XNS|B Chain B, Peptide Trapped Holliday Junction Intermediate In Cre-Loxp
Recombination
Length = 324
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 274
>pdb|1DRG|A Chain A, Crystal Structure Of Trimeric Cre Recombinase-Lox Complex
Length = 323
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 221 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 273
>pdb|1CRX|A Chain A, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|1CRX|B Chain B, Cre RecombinaseDNA COMPLEX REACTION INTERMEDIATE I
pdb|3C28|A Chain A, Crystal Structure Of The Product Synapse Complex
pdb|3C28|B Chain B, Crystal Structure Of The Product Synapse Complex
pdb|3C29|A Chain A, Cre-Loxp Synaptic Structure
pdb|3C29|B Chain B, Cre-Loxp Synaptic Structure
pdb|3C29|G Chain G, Cre-Loxp Synaptic Structure
pdb|3C29|H Chain H, Cre-Loxp Synaptic Structure
Length = 322
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 274
>pdb|4CRX|A Chain A, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
pdb|4CRX|B Chain B, Asymmetric Dna-Bending In The Cre-Loxp Site-Specific
Recombination Synapse
Length = 322
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEV 86
R +N V A + + + L G F+ T +L AK++ Q Y GHSA V
Sbjct: 222 RVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARV 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,614,570
Number of Sequences: 62578
Number of extensions: 136606
Number of successful extensions: 1020
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 421
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)