RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3639
(113 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 104 bits (262), Expect = 1e-28
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 1 MGVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 58
V V SP ++ L+ S D T KLWD+ +G + T RGH+N V +VAFS P G + +
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS-PDGYLLAS 236
Query: 59 GSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
GS D T+++W EC+QT GH+ V + +SPD S S D T RI++
Sbjct: 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 101 bits (254), Expect = 1e-27
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V V +S +GS D+T +LWD+++G + T GH + V +VAFS P G + +
Sbjct: 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSS 111
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
S DKT+K+W +C+ T RGH+ V V FSPD + S S D T ++++
Sbjct: 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Score = 99.3 bits (248), Expect = 1e-26
Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
+ + TGS D T K+WD+++G + T +GH V VA S G + +GS DKT
Sbjct: 16 AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS-ADGTYLASGSSDKT 74
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
++LW EC++T GH++ V V FSPD S S D T ++++
Sbjct: 75 IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122
Score = 97.4 bits (243), Expect = 6e-26
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
+ + S D T KLWD+++G + T GH V +VAFS P G+K+L+ S D T
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGT 200
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+KLW + +C+ T RGH V V FSPD S S D T R+++
Sbjct: 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249
Score = 78.5 bits (194), Expect = 9e-19
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 32 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTF 91
T +GH V VAFS P G + TGS D T+K+W E ++T +GH+ V V
Sbjct: 1 LRRTLKGHTGGVTCVAFS-PDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 92 SPDQSTFCSCSMDHTARIFNTM 113
S D + S S D T R+++
Sbjct: 60 SADGTYLASGSSDKTIRLWDLE 81
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 72.0 bits (175), Expect = 4e-16
Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
+GS D T +LWD+ +G + T GH + V + +FS P G + +GS D T++
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFS-PDGSLLASGSSDGTIR 266
Query: 67 LW-ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
LW + ++T GHS+ V+ V FSPD S S D T R+++
Sbjct: 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313
Score = 70.1 bits (170), Expect = 2e-15
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 72
S D T KLWD+++G + T GH + V ++AFS G I +GS D T++LW +
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
Query: 73 EECIQ-TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ ++ T GHS VV FSPD S S S D T R+++
Sbjct: 231 GKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDL 270
Score = 69.0 bits (167), Expect = 6e-15
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
+ +GS D T +LWD++S + T GH + V +VAFS P G + +GS D T
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS-PDGKLLASGSSDGT 307
Query: 65 LKLWASAKEECIQ--TYRGHSAEVVGVTFSPDQSTF-CSCSMDHTARIFNT 112
++LW + + T +GH V ++FSPD S S D T R+++
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358
Score = 64.3 bits (155), Expect = 2e-13
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 3/109 (2%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEIC--TYRGHQNVVYAVAFSEPYGDKILTGSFDK 63
+ + +GS D T +LWD+++G + T +GH+ V +++FS + GS D
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
T++LW + ++T GHS V+ V+FSPD S S D T R+++
Sbjct: 352 TIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Score = 59.3 bits (142), Expect = 1e-11
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 11 QRCLTGSYDRTCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYGDKILT--GSFDKTLK 66
+ L+GS D T KLWD+ +G I + G H + V +A S P G+ IL S D T+K
Sbjct: 78 ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137
Query: 67 LWASAKE-ECIQTYRGHSAEVVGVTFSPDQSTFCSCS-MDHTARIFNT 112
LW + + I+T GHS V + FSPD S S +D T ++++
Sbjct: 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Score = 56.6 bits (135), Expect = 1e-10
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 3 VPRVTSSPQRC---LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 59
V ++ SP GS D T +LWD+++G + T GH NV +V+FS P G + +G
Sbjct: 331 VSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFS-PDGRVVSSG 388
Query: 60 SFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S D T++LW + ++ GH++ V + FSPD + S S D+T R+++
Sbjct: 389 STDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440
Score = 45.5 bits (106), Expect = 1e-06
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+GS D T +LWD+ +G + GH + V ++ FS P G + +GS D T++LW
Sbjct: 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFS-PDGKSLASGSSDNTIRLWDLKTSL 445
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTA 107
V+FSPD S S D +
Sbjct: 446 KS------------VSFSPDGKVLASKSSDLSV 466
Score = 38.9 bits (89), Expect = 2e-04
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S L D L D+ S RGH++ + ++AFS P G+ +L+GS D T+KLW
Sbjct: 38 SGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAFS-PDGELLLSGSSDGTIKLW 92
Query: 69 A-SAKEECIQTYRG-HSAEVVGVTF-SPDQSTF--CSCSMDHTARIFN 111
E+ I++ G H + V + SPD ++ S S+D T ++++
Sbjct: 93 DLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD 140
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 45.4 bits (108), Expect = 4e-08
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
E ++T +GH+ V V FSPD S S D T ++++
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 43.8 bits (104), Expect = 2e-07
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 29 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
SG + T +GH V +VAFS P G + +GS D T+KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLW 39
Score = 26.1 bits (58), Expect = 1.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 11 QRCLTGSYDRTCKLWD 26
+ +GS D T KLWD
Sbjct: 25 KYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 45.0 bits (107), Expect = 5e-08
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 73 EECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ ++T +GH+ V V FSPD + S S D T R+++
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 41.6 bits (98), Expect = 1e-06
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 30 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
G + T +GH V +VAFS P G+ + +GS D T+++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVW 38
Score = 26.5 bits (59), Expect = 0.66
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWD 26
+ +GS D T ++WD
Sbjct: 18 AFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 37.0 bits (85), Expect = 0.001
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 7 TSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
++ P +GS D + KLW I G I T + N+ V F G + GS D +
Sbjct: 585 SADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVY 643
Query: 67 LWASAKEEC-IQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + + T GHS V V F D ST S S D+T ++++
Sbjct: 644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688
Score = 30.8 bits (69), Expect = 0.13
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ +++ ++WD+ + + H+ V+++ +S + +GS D ++KLW+ +
Sbjct: 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV 609
Query: 75 CIQTYRGHSAEVVGVTFSPDQS-TFCSCSMDH 105
I T + A + V F + + S DH
Sbjct: 610 SIGTIKT-KANICCVQFPSESGRSLAFGSADH 640
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 35.3 bits (81), Expect = 0.003
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 10 PQRCLTGSYDRTCKLWDIKS-------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
PQ+ T S D T W I I +GH V V+F + + + D
Sbjct: 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+ +W + + ++ + HS ++ + ++ D S C+ S D I
Sbjct: 148 MVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI 194
>gnl|CDD|153348 cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexin 2. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. SNX2 is a component of the retromer
complex, a membrane coat multimeric complex required for
endosomal retrieval of lysosomal hydrolase receptors to
the Golgi. The retromer consists of a cargo-recognition
subcomplex and a subcomplex formed by a dimer of sorting
nexins (SNX1 and/or SNX2), which ensures effcient cargo
sorting by facilitating proper membrane localization of
the cargo-recognition subcomplex. BAR domains form
dimers that bind to membranes, induce membrane bending
and curvature, and may also be involved in
protein-protein interactions.
Length = 234
Score = 28.1 bits (62), Expect = 1.0
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 39 HQNVVYA--VAFSEPYGDKI-----LTGSFDKTLKLWASAKEECIQTYRGHSAEV-VGVT 90
HQ+ +A FSE GD I + G FD+ +K W ++ + + AE +
Sbjct: 96 HQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA 155
Query: 91 FSPDQ 95
PD+
Sbjct: 156 NKPDK 160
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 27.2 bits (60), Expect = 2.1
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW------ASAKE----ECIQTYRGHSAEV 86
+GH + + + F+ + + + +GS D T+++W S KE +CI +GH ++
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI--LKGHKKKI 128
Query: 87 VGVTFSP-DQSTFCSCSMDHTARIFN 111
+ ++P + CS D I++
Sbjct: 129 SIIDWNPMNYYIMCSSGFDSFVNIWD 154
>gnl|CDD|220625 pfam10191, COG7, Golgi complex component 7 (COG7). COG7 is a
component of the conserved oligomeric Golgi complex
which is required for normal Golgi morphology and
localisation. Mutation in COG7 causes a congenital
disorder of glycosylation.
Length = 768
Score = 27.1 bits (60), Expect = 2.7
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 47 AFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV---TFSPDQSTFCSCS 102
A SE LT +D+ L+ + + C Q + V + T + SC
Sbjct: 244 AGSESLPLASQLTEFYDELLEYLHTQLKWCSQVFPEPYEVVTVLLVETLGALVPSRPSCV 303
Query: 103 MDHTAR 108
R
Sbjct: 304 NLALKR 309
>gnl|CDD|225752 COG3211, PhoX, Predicted phosphatase [General function prediction
only].
Length = 616
Score = 26.7 bits (59), Expect = 3.5
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 81 GHSAEVVGVTFSPDQSTF 98
E G FSPD T
Sbjct: 551 PIGCEFTGPCFSPDGKTL 568
>gnl|CDD|218159 pfam04586, Peptidase_U35, Caudovirus prohead protease. Family of
Caudovirus prohead proteases also found in a number of
bacteria possibly as the result of horizontal transfer.
Length = 159
Score = 26.1 bits (58), Expect = 4.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 44 YAVAFSEP--YGDKILTGSFDKTLKLWA 69
YA F+ +G+ I G+FD TL
Sbjct: 19 YASVFNVVSEFGEVIAPGAFDNTLASRD 46
>gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
Length = 442
Score = 25.9 bits (57), Expect = 5.4
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 21 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR 80
TCK W I+ +Q VVY V E D+ L D + C+Q
Sbjct: 242 TCKAWGIR------ATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAV 295
Query: 81 GHSAEVVG 88
GH V G
Sbjct: 296 GHPLTVYG 303
>gnl|CDD|218748 pfam05787, DUF839, Bacterial protein of unknown function (DUF839).
This family consists of several bacterial proteins of
unknown function that contain a predicted beta-propeller
repeats.
Length = 515
Score = 26.0 bits (57), Expect = 6.0
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 78 TYRGHSAEVVGVTFSPDQSTF 98
+E G TFSPD T
Sbjct: 487 LTGPEGSEFTGPTFSPDGRTL 507
>gnl|CDD|181800 PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Reviewed.
Length = 238
Score = 25.5 bits (57), Expect = 6.1
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 21 TCKLWDIKSG 30
TC+LWD ++
Sbjct: 198 TCRLWDKETN 207
>gnl|CDD|133470 cd01415, SAICAR_synt_PurC, bacterial and archaeal
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. A subfamily of SAICAR
synthetases represented by the Thermotoga maritima (Tm)
enzyme and E. coli PurC. SAICAR synthetase catalyzes the
seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 230
Score = 25.5 bits (57), Expect = 6.9
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 21 TCKLWDIKSG 30
TC+LWD ++G
Sbjct: 193 TCRLWDKETG 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.132 0.425
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,400,613
Number of extensions: 417654
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 37
Length of query: 113
Length of database: 10,937,602
Length adjustment: 77
Effective length of query: 36
Effective length of database: 7,522,344
Effective search space: 270804384
Effective search space used: 270804384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)