RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3639
(113 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 87.1 bits (214), Expect = 2e-22
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
L+GS D+T K+WD+ +G + T GH N V V F G IL+ + DKTL++
Sbjct: 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-SGGKFILSCADDKTLRV 273
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
W + C++T H V + F + S+D T +++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 64.0 bits (154), Expect = 6e-14
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 19/131 (14%)
Query: 1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF------------ 48
+ + R + S D+T ++W + + R H++VV +++
Sbjct: 146 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEA 205
Query: 49 -------SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSC 101
S G +L+GS DKT+K+W + C+ T GH V GV F SC
Sbjct: 206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 102 SMDHTARIFNT 112
+ D T R+++
Sbjct: 266 ADDKTLRVWDY 276
Score = 56.3 bits (134), Expect = 3e-11
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 23 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
K W + E GH++ V V F P +++ S D T+K+W + +T +GH
Sbjct: 1 KEWIPRPP-EKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 83 SAEVVGVTFSPDQSTFCSCSMDH 105
+ V ++F SCS D
Sbjct: 59 TDSVQDISFDHSGKLLASCSADM 81
Score = 51.7 bits (122), Expect = 1e-09
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 41/143 (28%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-------------------- 50
++ S D T K+WD ++G T +GH + V ++F
Sbjct: 30 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89
Query: 51 ---------------------PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV 89
P GD I++ S DKT+K+W C++T+ GH V V
Sbjct: 90 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 149
Query: 90 TFSPDQSTFCSCSMDHTARIFNT 112
+ D + SCS D T R++
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVV 172
Score = 47.8 bits (112), Expect = 3e-08
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 70
++ S D+T K+W++++G+ + T+ GH+ V V + G I + S D+T+++W
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 172
Query: 71 AKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
A +EC R H V ++++P+ S + +
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Score = 40.9 bits (94), Expect = 9e-06
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
K W E GH + V V F P S S S D T ++++
Sbjct: 1 KEWIPRPPE-KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 72.1 bits (175), Expect = 7e-17
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV--VYAVAFSEPYGDKILTGSFDKTLKLW 68
TGS D TC+L+D+++ E+ TY + + +V+FS G +L G D +W
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVW 297
Query: 69 ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ K + GH V + + D + S D +I+N
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 66.7 bits (161), Expect = 5e-15
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL--W 68
+ ++G+ D + KLWD++ G T+ GH++ + A+ F P G+ TGS D T +L
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDL 255
Query: 69 ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ +E ++ + V+FS + D +++
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299
Score = 50.5 bits (119), Expect = 3e-09
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 18 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ 77
D TC LWDI++G + T+ GH V ++ P ++G+ D + KLW + C Q
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSL-SLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
T+ GH +++ + F P+ + F + S D T R+F+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Score = 49.0 bits (115), Expect = 1e-08
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T RGH +YA+ + +++ S D L +W S + S+ V+ ++P
Sbjct: 50 TLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 95 QSTFCSCSMDHTARIFN 111
+ +D+ I+N
Sbjct: 109 GNYVACGGLDNICSIYN 125
Score = 37.8 bits (86), Expect = 1e-04
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+ +T RGH A++ + + D S S D I+++
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85
Score = 28.9 bits (63), Expect = 0.12
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS 49
+ ++ S D +WD + +++ + V A++
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 66.7 bits (161), Expect = 6e-15
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEI------------CTYRGHQNVVYAVAFSEPY 52
T Q ++GS DR+ KLW++++ + TY GH++ V +VA +
Sbjct: 261 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QN 319
Query: 53 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGV------TFSPDQSTFCSCSMDHT 106
+ IL+GS D+ + W + +GH V+ V + P+ + F + S D
Sbjct: 320 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 379
Query: 107 ARIFN 111
ARI+
Sbjct: 380 ARIWK 384
Score = 54.4 bits (129), Expect = 1e-10
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTY-------RGHQNVVYAVAFSEPYGDKILTGS 60
+ GS DR ++WD ++G + GH++ VY+V F+ G +++GS
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGS 273
Query: 61 FDKTLKLW------------ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTAR 108
D+++KLW C TY GH V+ V + + S S D
Sbjct: 274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 333
Query: 109 IFNT 112
++
Sbjct: 334 FWDK 337
Score = 44.4 bits (103), Expect = 5e-07
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 24/122 (19%)
Query: 14 LTGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
L + L++ E+ H +VV V FS G+ + TG +KT +++
Sbjct: 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLATGC-NKTTQVYR 89
Query: 70 SAKEECIQTYRGHSAE------------------VVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + SA + V FSPD + + D RI++
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 112 TM 113
Sbjct: 150 IE 151
Score = 44.0 bits (102), Expect = 6e-07
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
S + ++GS DRT ++WD+++G T V G I GS D+ +++W
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP-GDGKYIAAGSLDRAVRVW 232
Query: 69 ASAKEECIQTY-------RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
S ++ GH V V F+ D + S S+D + +++N
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282
Score = 29.4 bits (64), Expect = 0.083
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 56 ILTGSFDKTLKLWASAKEECI----QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
L + L+ A I H++ V V FS D + + T +++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 112 T 112
Sbjct: 90 V 90
Score = 27.8 bits (60), Expect = 0.28
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRG------------------HQNVVYAVAFS 49
S+ L ++T +++ + G + + +V FS
Sbjct: 71 SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 130
Query: 50 EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
P G + TG+ D+ +++W + + +GH ++ + + P S S D T RI
Sbjct: 131 -PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 110 FNTM 113
++
Sbjct: 190 WDLR 193
Score = 25.9 bits (55), Expect = 1.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 11 QRCLTGSYDRTCKLWDIK 28
TGS D ++W K
Sbjct: 369 NVFATGSGDCKARIWKYK 386
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 60.2 bits (144), Expect = 1e-12
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 25 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
W +GH + V G++I++GS D TLK+W++ +C++T GH+
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 85 EVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
V + S T
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETG 87
Score = 59.4 bits (142), Expect = 2e-12
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
+ ++G+ D T K+WDIK+G + T +G AV + + ++T S D
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279
Query: 63 KTLKLWASAKEECIQTYR-----GHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
T+KLW E I+ G V + S + S + T
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332
Score = 50.2 bits (118), Expect = 5e-09
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
+R ++G+YD K+WD ++ + T +GH N VY++ F G +++GS D ++++W
Sbjct: 147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWD 203
Query: 70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
CI T GH + G+ + S + D T +I++
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIK 245
Score = 49.8 bits (117), Expect = 5e-09
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
++GS D + ++WD+++G+ I T GHQ++ + + +++G+ D T+K+W
Sbjct: 186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIW 242
Query: 69 ASAKEECIQTYRGHSAEVV-GVTFSPDQSTFCSCSMDHTARIFNT 112
+C+QT +G + +++ + S D T ++++
Sbjct: 243 DIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Score = 47.5 bits (111), Expect = 4e-08
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 52
+ R ++GS D T K+W +G + T GH V++ +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69
Score = 39.0 bits (89), Expect = 4e-05
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 62
V + +R ++GS D T ++WDI++G + GH AV + G ++++G++D
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYD 156
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+K+W E C+ T +GH+ + D S S+D + R+++
Sbjct: 157 FMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGSLDTSIRVWD 203
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 58.3 bits (139), Expect = 7e-12
Identities = 12/81 (14%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW--ASAKEECIQTYRGHSAEVVGVTFS 92
+ + A++ +I + + ++ + K + + H+ +V GV ++
Sbjct: 2 YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 93 PDQSTFCSCSMDHTARIFNTM 113
PD + +C D A ++
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLK 81
Score = 49.5 bits (116), Expect = 8e-09
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 11 QRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+ + +++ ++ + H V V ++ P ++I+T D+ +W
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIVTCGTDRNAYVW 78
Score = 46.4 bits (108), Expect = 9e-08
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
+ + +D L+ S ++ G +V + + K
Sbjct: 252 ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPD----QSTFCSCSMDHTARIFN 111
++A + + H V ++ S FC+ MD I++
Sbjct: 312 GSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
Score = 34.1 bits (76), Expect = 0.002
Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 10/76 (13%)
Query: 15 TGSYDRTCKLWDIK------SGHEICTYRGHQNVVYAVAFSEPYGD---KILTGSFDKTL 65
+ + D K + H+N V ++ + T D +
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353
Query: 66 KLW-ASAKEECIQTYR 80
+W + E ++ +
Sbjct: 354 SIWDVRSLESALKDLK 369
Score = 27.9 bits (60), Expect = 0.26
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 2/103 (1%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
R S+D T L D + T + AV F ++ D L+
Sbjct: 213 GSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFI--TESSLVAAGHDCFPVLFT 270
Query: 70 SAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
++ G + + ++D A +
Sbjct: 271 YDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 313
Score = 26.0 bits (55), Expect = 1.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 4 PRVTSSPQRCLTGSYDRTCKLWDIKSG 30
+ + T D +WD++S
Sbjct: 335 SGGKAKCSQFCTTGMDGGMSIWDVRSL 361
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 57.5 bits (137), Expect = 1e-11
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
L + + + + H++ V ++ F+ G ++ D L
Sbjct: 233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA-YCGKWFVSTGKDNLLNA 291
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
W + I S+ V+ S D + S D A ++ +
Sbjct: 292 WRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 43.3 bits (100), Expect = 1e-06
Identities = 15/81 (18%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-----YRGHSAEVVGVTFS 92
H VV AV S + TG +K+W + +
Sbjct: 49 NHGEVVCAVTIS-NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 93 PDQSTFCSCSMDHTARIFNTM 113
PD T T I++
Sbjct: 107 PDGCTLIVGGEASTLSIWDLA 127
Score = 30.2 bits (66), Expect = 0.049
Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
Y+ + + + D + I T H V VT S +
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG 70
Query: 103 MDHTARIFNT 112
++++
Sbjct: 71 -KGCVKVWDI 79
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 55.6 bits (132), Expect = 5e-11
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 60
G+ + + ++GS D T +LWDI+ G + GH+ +V +I++G+
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGA 235
Query: 61 FDKTLKLW---------ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+D +K+W A A C++T HS V + F S S D T I++
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
Score = 46.4 bits (108), Expect = 1e-07
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 31 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVT 90
I VY + + KI++G D T+K+W EC + GH+ V+ +
Sbjct: 6 QRIHCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62
Query: 91 FSPDQSTFCSCSMDH 105
+ S
Sbjct: 63 YDERVIITGSSDSTV 77
Score = 44.5 bits (103), Expect = 4e-07
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 9 SPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+ ++ S DRT K+W+ + + T GH+ + + + +++GS D T++LW
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 203
Query: 69 ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
C++ GH E + D S + D ++++
Sbjct: 204 DIECGACLRVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDL 245
Score = 41.4 bits (95), Expect = 6e-06
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 52
GV + Q+ ++G D T K+WD + GH V + + E
Sbjct: 17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
Score = 36.7 bits (83), Expect = 2e-04
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 20 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY 79
R+ +WD+ S +I R AV + I++ S D+T+K+W ++ E ++T
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 80 RGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
GH + + + S S D+T R+++
Sbjct: 175 NGHKRGIACLQYRDRL--VVSGSSDNTIRLWDI 205
Score = 31.0 bits (68), Expect = 0.025
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 73 EECIQTYRGHSAEVVGVT-FSPDQSTFCSCSMDHTARIFNT 112
+Q S GV D S D+T +I++
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK 42
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 52.2 bits (123), Expect = 1e-09
Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 12/120 (10%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR------------GHQNVVYAVAFSEPYG 53
V++ ++ S D K+WD K H +V+ A+
Sbjct: 20 VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79
Query: 54 DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+ T SF L + +E+ + +++ + + + +
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Score = 44.5 bits (103), Expect = 4e-07
Identities = 10/91 (10%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC------IQTYRGHSAEVVG 88
+ H +++V+ + ++ S D LK+W + + ++ H + +
Sbjct: 9 AGKAHDADIFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 89 VTF-------SPDQSTFCSCSMDHTARIFNT 112
V + + + S +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRI 96
Score = 44.5 bits (103), Expect = 4e-07
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 25 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
S H + V +++F+ G+ + + +D L+ W +E I T H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFN-DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332
Query: 85 EV----VGVTFSPDQSTFCSCSMDHTARI 109
++ + + + +
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGVFDVKFL 361
Score = 43.3 bits (100), Expect = 1e-06
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 20/104 (19%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY----AVAFSEPYGDKILTGSFDKTLK 66
+ + +D + WD+K+ I T H + + +A +GD +
Sbjct: 302 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVD-EHGDSLAEPGVFDVKF 360
Query: 67 LWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIF 110
L + + + C +D + R F
Sbjct: 361 LKKGWR---------------SGMGADLNESLCCVCLDRSIRWF 389
Score = 35.2 bits (79), Expect = 9e-04
Identities = 13/143 (9%), Positives = 31/143 (21%), Gaps = 33/143 (23%)
Query: 3 VPRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------VYAVAFS--- 49
+ R T S+ + I E + +A+ +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 131
Query: 50 -EPYGDKILTGSFDKTLKLW------------------ASAKEECIQTYRGHSAEVVGVT 90
+++ T +W + +++ S V
Sbjct: 132 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD 191
Query: 91 FSPDQSTFCSCSMDHTARIFNTM 113
S + + T +I
Sbjct: 192 ISER-GLIATGFNNGTVQISELS 213
Score = 32.9 bits (73), Expect = 0.005
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ H A++ V+ SCS D ++++
Sbjct: 6 TANAGKAHDADIFSVSACNS--FTVSCSGDGYLKVWDN 41
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 49.9 bits (117), Expect = 5e-09
Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS--FDK 63
+ +TG+ D+ +++D + + GH V+A+ ++ G +++GS
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTV 76
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + + + + + + S D+T ++
Sbjct: 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Score = 43.7 bits (101), Expect = 8e-07
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 8 SSPQRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
L + +++++SG + + +++V F + D
Sbjct: 291 YVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT--LVAAVEKDGQSF 348
Query: 67 LW 68
L
Sbjct: 349 LE 350
Score = 39.1 bits (89), Expect = 3e-05
Identities = 8/89 (8%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 22 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYR 80
+ + + H + A+ D IL + ++ + +
Sbjct: 263 GSIRGWDANDYSRKFSYHHTNLSAITTFYV-SDNILVSGSENQFNIYNLRSGKLVHANIL 321
Query: 81 GHSAEVVGVTFSPDQSTFCSCSMDHTARI 109
+ ++ V F + + D + +
Sbjct: 322 KDADQIWSVNFKGK-TLVAAVEKDGQSFL 349
Score = 29.9 bits (65), Expect = 0.065
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 78 TYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
T RGH V+ + + + + D R++++
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDS 40
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 49.5 bits (116), Expect = 7e-09
Identities = 6/79 (7%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 38 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVVGVTFSPD 94
++ + + P +L S+D +L ++ + + ++ F +
Sbjct: 9 APKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 95 QSTFCSCSMDHTARIFNTM 113
+ +
Sbjct: 68 TDLQIYVGTVQGEILKVDL 86
Score = 46.4 bits (108), Expect = 1e-07
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 69
+ T D W++++ +I + V + + + + D T K
Sbjct: 263 HKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-VVKIA-CSDNILCLATSDDTFKTN- 319
Query: 70 SAKEECIQTYRGHSAEV 86
QT +++ +
Sbjct: 320 ---AAIDQTIELNASSI 333
Score = 44.5 bits (103), Expect = 4e-07
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 23 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 82
K + + V ++ FS P + T D + W + I+ +
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 83 SAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+ + V V + + C + D T + +
Sbjct: 293 NEDSV-VKIACSDNILCLATSDDTFKTNAAI 322
Score = 41.8 bits (96), Expect = 4e-06
Identities = 7/75 (9%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKL 67
L S+D + ++ + +++ + F + +I G+ +
Sbjct: 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83
Query: 68 WASAKEECIQTYRGH 82
Q +
Sbjct: 84 VDLIGSPSFQALTNN 98
Score = 38.7 bits (88), Expect = 5e-05
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ +Q + + + P +S S D + ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
Score = 34.1 bits (76), Expect = 0.002
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 18/121 (14%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEI---CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
R + G + + + + + G + + VA + S D +
Sbjct: 160 SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVA 219
Query: 67 LWASAKEECIQT---------------YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + + V + FSP + D +N
Sbjct: 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN 279
Query: 112 T 112
Sbjct: 280 L 280
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 49.5 bits (116), Expect = 8e-09
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY--AVAFSEPYGDKILTGSFDKTLKLW 68
Q+ T D T ++WD+ + + + + + V +I++ S D TL +
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 40.7 bits (93), Expect = 9e-06
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 3/90 (3%)
Query: 25 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
+ A S K T D T+++W +C+Q +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 85 EVVGVTFS---PDQSTFCSCSMDHTARIFN 111
++ S S+D T +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 32.6 bits (72), Expect = 0.006
Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 12/109 (11%)
Query: 15 TGSYDRTCKLWDIKSG--HEICTYRGHQ-NVVYAVAFS-EPYGDKILTGSFDKTLKLWAS 70
+ D + + GH +VV V FS + +G + +W
Sbjct: 35 PCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 94
Query: 71 AKEECIQT--------YRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
++ + ++ + + +++ + C
Sbjct: 95 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143
Score = 31.0 bits (68), Expect = 0.021
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 37 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECIQTYRGHSAEVV-GVTFS 92
+N +++ P + I +K + + GH + VV V FS
Sbjct: 14 STQRNFTTHLSYD-PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 93 PDQSTFCSCSMDHTARIFNTM 113
P + + CS D + ++
Sbjct: 73 PIKGSQYLCSGDESGKVIVWG 93
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 48.0 bits (112), Expect = 3e-08
Identities = 7/58 (12%), Positives = 20/58 (34%)
Query: 11 QRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 68
+ + S D+T K+W++ + T + +++ S + +
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
Score = 44.1 bits (102), Expect = 6e-07
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 40 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFC 99
+ + + P GDKI + ++ + Y HS + SP
Sbjct: 17 RGTAVVLGNT-PAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74
Query: 100 SCSMDHTARIFNTM 113
S + RI++T
Sbjct: 75 SGDVHGNVRIWDTT 88
Score = 43.4 bits (100), Expect = 1e-06
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 7/109 (6%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE------PYGDKILTGSFDK 63
+ D T L++ G + + A + S P G KI + S DK
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260
Query: 64 TLKLWASAKEECIQTYRGHSAEVVGVT-FSPDQSTFCSCSMDHTARIFN 111
T+K+W A + +T + + S S + N
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 41.0 bits (94), Expect = 6e-06
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 3/97 (3%)
Query: 19 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECI 76
+ + S + Y H + S P G +G +++W + +
Sbjct: 37 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILK 95
Query: 77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
T S V +++ + + +
Sbjct: 96 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 47.3 bits (110), Expect = 4e-08
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 1 MGVPRVTSSPQRCLTGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYGDKILTG 59
G TGS D ++ +K + I H++ V + + +++
Sbjct: 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSS 275
Query: 60 SFDKTLKLW 68
D +K W
Sbjct: 276 GADACIKRW 284
Score = 46.1 bits (107), Expect = 1e-07
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 18 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW-ASAKEECI 76
R K + E D + TGS D + ++ + I
Sbjct: 192 QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII 251
Query: 77 QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
+ H V + + ST S D + +N +
Sbjct: 252 KALNAHKDGVNNLLWETP-STLVSSGADACIKRWNVV 287
Score = 43.4 bits (100), Expect = 1e-06
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 33 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFS 92
+ T GH + A+ + +++GS+D + W+S+ ++ HS +V + S
Sbjct: 6 LKTISGHNKGITALTVN-----PLISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55
Query: 93 PDQSTFCSCSMDHTARIFNTM 113
Q D T
Sbjct: 56 KAQEYSSISWDDTLKVNGITK 76
Score = 33.4 bits (74), Expect = 0.003
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 72 KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+E ++T GH+ + +T +P S S D +++
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSS 38
Score = 32.2 bits (71), Expect = 0.009
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 50
++GSYD W S H+ H N++ ++ S+
Sbjct: 25 ISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK 56
Score = 25.7 bits (54), Expect = 1.7
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 8 SSPQRCLTGSYDRTCKLWDI 27
+P ++ D K W++
Sbjct: 267 ETPSTLVSSGADACIKRWNV 286
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 47.1 bits (110), Expect = 5e-08
Identities = 12/93 (12%), Positives = 25/93 (26%), Gaps = 6/93 (6%)
Query: 6 VTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 65
+P + + +D++ I + Y+V S G + G L
Sbjct: 246 TAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVS-TDGSTVWLGGALGDL 303
Query: 66 KLWASAKEECIQTYR----GHSAEVVGVTFSPD 94
+ + E + F+ D
Sbjct: 304 AAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336
Score = 40.9 bits (94), Expect = 8e-06
Identities = 12/107 (11%), Positives = 23/107 (21%), Gaps = 9/107 (8%)
Query: 14 LTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWAS 70
L + + D + + P G T + ++L
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDL 63
Query: 71 AKEECIQTYRGHSAEVVG-----VTFSPDQSTFCSCSMDHTARIFNT 112
E + + E SPD T + +
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110
Score = 40.9 bits (94), Expect = 8e-06
Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 3/98 (3%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+Y D+++G +V Y P + L+ + K
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNA 271
Query: 75 CIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
I+ V S D ST ++
Sbjct: 272 SIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Score = 34.0 bits (76), Expect = 0.002
Identities = 7/62 (11%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 54 DKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVVGVTFSPDQST-FCSCSMDHTARIF 110
D IL + L + + K + A + +P + + + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 111 NT 112
+
Sbjct: 62 DL 63
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 45.5 bits (106), Expect = 2e-07
Identities = 15/108 (13%), Positives = 26/108 (24%), Gaps = 2/108 (1%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 64
R Q T D+K+G +Y P + G +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R 273
Query: 65 LKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
L + + + I+ V F + +FN
Sbjct: 274 LAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNP 320
Score = 40.5 bits (93), Expect = 1e-05
Identities = 8/116 (6%), Positives = 24/116 (20%), Gaps = 9/116 (7%)
Query: 4 PRVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKIL-TGSF 61
P + + + + +Y + D+ S + + + P +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-PDNRTAYVLNNH 60
Query: 62 DKTLKLWASAKEECI------QTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ + + SPD + +
Sbjct: 61 YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 44.8 bits (104), Expect = 4e-07
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL--TGSFDKTLKLWASAK 72
+ R + D K+G + + + ++ S +L + DKTL + +
Sbjct: 275 HKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVS-QDEKPLLYALSTGDKTLYIHDAES 332
Query: 73 EECIQTYRGHSAEVVGVTFSPD 94
E +++ +T +
Sbjct: 333 GEELRSVNQLGHGPQVITTADM 354
Score = 38.2 bits (87), Expect = 6e-05
Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 24/134 (17%)
Query: 2 GVPRVTSSPQRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAF----------- 48
P + R + +Y D+ SG + A +
Sbjct: 198 NHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257
Query: 49 --------SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST--F 98
D+ + + + + + E + + + + S D+ +
Sbjct: 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKPLLY 316
Query: 99 CSCSMDHTARIFNT 112
+ D T I +
Sbjct: 317 ALSTGDKTLYIHDA 330
Score = 27.8 bits (60), Expect = 0.28
Identities = 7/71 (9%), Positives = 15/71 (21%), Gaps = 8/71 (11%)
Query: 43 VYAVAFSEPYGDKIL-----TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQST 97
A + P ++ + + I G + + D S
Sbjct: 4 RILEAPA-PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSF 60
Query: 98 FCSCSMDHTAR 108
S +
Sbjct: 61 IAHASTVFSRI 71
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 44.6 bits (103), Expect = 4e-07
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAEVVGVTFSP 93
GH + A++ S G + + + + W + + + H+ + G+ +
Sbjct: 7 VRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65
Query: 94 DQSTFCSCSMDH 105
F DH
Sbjct: 66 KGDLFTVSWDDH 77
Score = 41.9 bits (96), Expect = 4e-06
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 2/104 (1%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW- 68
S A P ++ TGS D ++ +W
Sbjct: 193 FLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 252
Query: 69 -ASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
+ I H+ V +++T S D + +N
Sbjct: 253 MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 38.8 bits (88), Expect = 5e-05
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
Q GH+ + ++ S D T S + ++
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 34.2 bits (76), Expect = 0.002
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 2/111 (1%)
Query: 5 RVTSSPQRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFD- 62
++ + + + WDI +G + H ++ + + ++
Sbjct: 19 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHL 78
Query: 63 KTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
K + S + S++ +G+ S D + H A +
Sbjct: 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Score = 24.2 bits (50), Expect = 5.0
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 8 SSPQRCLTGSYDRTCKLWDI 27
+ ++ D K W++
Sbjct: 278 LNETTIVSAGQDSNIKFWNV 297
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 44.5 bits (103), Expect = 5e-07
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+D+K+ +N + + S ++ D + + K E
Sbjct: 293 GAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLS-ADRKTVMVRKDDGKIYTFPLEKPE 347
Query: 75 CIQT 78
+T
Sbjct: 348 DERT 351
Score = 44.1 bits (102), Expect = 6e-07
Identities = 8/88 (9%), Positives = 15/88 (17%), Gaps = 5/88 (5%)
Query: 25 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 84
D I + + L + +
Sbjct: 261 VDPGDYRMIIPLESSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKT----RKVTEVKN 315
Query: 85 EVVGVTFSPDQSTFCSCSMDHTARIFNT 112
+ + S D+ T D F
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPL 343
Score = 37.1 bits (84), Expect = 2e-04
Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 3/68 (4%)
Query: 43 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCS 102
+A FS GD I S + + + ++ + V D
Sbjct: 5 KFAEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHG 61
Query: 103 MDHTARIF 110
+
Sbjct: 62 TREGDFLG 69
Score = 36.4 bits (82), Expect = 3e-04
Identities = 5/97 (5%), Positives = 16/97 (16%), Gaps = 9/97 (9%)
Query: 17 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA----- 71
+ ++D++ + + + + S+
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAP--AFDADSKNLYYLSYRSLDPSPDRVVLNFS 213
Query: 72 --KEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHT 106
P T + D
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLN 250
Score = 27.1 bits (58), Expect = 0.44
Identities = 3/36 (8%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 2 GVPRVTSSP--QRCLTGSYDRTCKLWDIKSGHEICT 35
+ + S + + D + ++ + T
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 34.5 bits (77), Expect = 0.001
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKE 73
S + D+ S T N S P G K+ + + + +A
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVIS-PDGTKVYVANAHSNDVSIIDTATN 64
Query: 74 ECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNTM 113
I T S+ + + + T + +T
Sbjct: 65 NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104
Score = 31.4 bits (69), Expect = 0.018
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 10 PQRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLW 68
Y T + D + + +A + P G K+ SF T+ +
Sbjct: 214 AYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVT-PDGKKVYVALSFCNTVSVI 271
Query: 69 ASAKEECIQT 78
+A T
Sbjct: 272 DTATNTITAT 281
Score = 28.7 bits (62), Expect = 0.15
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 68 WASAKEECIQTYRGHSAEVVGVTFSPDQST-FCSCSMDHTARIFNT 112
+ + + G+ +PD + + S +T + +T
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDT 273
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 33.4 bits (75), Expect = 0.004
Identities = 6/54 (11%), Positives = 13/54 (24%), Gaps = 1/54 (1%)
Query: 58 TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFN 111
T + L ++ ++ A V S D + +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89
Score = 28.4 bits (62), Expect = 0.17
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 23/90 (25%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNV---------VYAVAFSEPYGDKILTGSF---- 61
++ ++D+K+ V ++ GD++ +
Sbjct: 327 DARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYN-KRGDEVWFSVWNGKN 385
Query: 62 ---------DKTLKLWASAKEECIQTYRGH 82
DKTLKL A K+ + T G
Sbjct: 386 DSSALVVVDDKTLKLKAVVKDPRLITPTGK 415
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 31.7 bits (71), Expect = 0.012
Identities = 7/55 (12%), Positives = 11/55 (20%), Gaps = 1/55 (1%)
Query: 58 TGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPDQSTFCSCSMDHTARIFNT 112
T + L + E A V S D + +
Sbjct: 37 TLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDL 90
Score = 31.7 bits (71), Expect = 0.013
Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 17/81 (20%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF------------- 61
D K I I G VV F+ G ++ +
Sbjct: 345 GDGSDPEFKTLPIAEWAGIT--EGQPRVVQ-GEFN-KDGTEVWFSVWNGKDQESALVVVD 400
Query: 62 DKTLKLWASAKEECIQTYRGH 82
DKTL+L K+E + T G
Sbjct: 401 DKTLELKHVIKDERLVTPTGK 421
Score = 27.8 bits (61), Expect = 0.27
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 5/60 (8%)
Query: 35 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVVGVTFSPD 94
T + +VA + D K A+ I VV F+ D
Sbjct: 324 TLNPEAEISGSVAV--FDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQPRVVQGEFNKD 378
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 31.9 bits (71), Expect = 0.012
Identities = 6/118 (5%), Positives = 28/118 (23%), Gaps = 21/118 (17%)
Query: 15 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 74
+ G+++ A F G +++ + + + +
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFR-SAGFQMVAKLKNTDGIMILTVEHS 286
Query: 75 CIQTYRG------------------HSAEVVGVTFSPDQST--FCSCSMDHTARIFNT 112
+ + + + D ++ + + + I++
Sbjct: 287 RSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 27.6 bits (61), Expect = 0.30
Identities = 12/109 (11%), Positives = 25/109 (22%), Gaps = 29/109 (26%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS-- 70
G T + I + + + + G L +FD + +
Sbjct: 273 IANGKLSPTVSVIAIDKLDD--LFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330
Query: 71 --------AKEECIQTYR-----------------GHSAEVVGVTFSPD 94
+ I+ Y GH+ + + D
Sbjct: 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDAD 379
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 27.5 bits (59), Expect = 0.42
Identities = 6/58 (10%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 58 TGSFDKTLKLW---ASAKEECIQTYRGHSAEVVGVTFSPDQST-FCSCSMDHTARIFN 111
+ + +W Q +V + SPD+ + + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65
>d1myna_ g.3.7.4 (A:) Drosomycin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 44
Score = 25.3 bits (55), Expect = 0.44
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 13 CLTGSYDRTCKLWDIKSGHEICTYRGH 39
CL+G Y C +WD ++ +C G
Sbjct: 2 CLSGRYKGPCAVWDNETCRRVCKEEGR 28
>d2nojb1 a.7.17.1 (B:52-109) Uncharacterized protein SAV1155
{Staphylococcus aureus [TaxId: 1280]}
Length = 58
Score = 25.8 bits (56), Expect = 0.48
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 28 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 66
K + T+R Q V + F Y K L D LK
Sbjct: 15 KRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLK 53
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein
6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 465
Score = 24.9 bits (53), Expect = 2.5
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 66 KLWASAKEECIQTYRGHSAEVVGVTFSPDQSTF 98
+ +C+ + +FS F
Sbjct: 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia
coli [TaxId: 562]}
Length = 759
Score = 24.4 bits (53), Expect = 4.9
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 51 PY-GDK-ILTGSFDKTLKLWASAKE 73
PY GD+ L G+ + T LW E
Sbjct: 35 PYEGDESFLAGATEATTTLWDKVME 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.425
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,941
Number of extensions: 17193
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 121
Length of query: 113
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 42
Effective length of database: 1,432,766
Effective search space: 60176172
Effective search space used: 60176172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.8 bits)