BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3640
(616 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 245 bits (626), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 222/436 (50%), Gaps = 37/436 (8%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 239
+ L H + + F G + S D+T KLW+ ++G + T GH + V VAFS
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS- 230
Query: 240 PYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
P G + S D+T KLW+ ++G + T GH + V VAF P G I + S DKT+KL
Sbjct: 231 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKL 288
Query: 298 WASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
W + + +QT GHS+ V FSPD T S S D T +++N N GQ + TL H+
Sbjct: 289 W-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS 346
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
V + FS D + + S D ++ +W+ Q + LTGHS +
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGHSSSVR 389
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
F+ IAS+S D T KLW+ R TL H V +AF +A+AS D+
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
T LW G +LLQT GHS S V +AF G +A+AS D+T KLW G +LL
Sbjct: 449 TVKLWNRNG--QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 501
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
QT GHS+ V V+F P G+ + S S D T +LW+ +G+ +Q L H V+ F+ +
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 595 GDTIITASKDNTCCIW 610
G TI +AS D T +W
Sbjct: 561 GQTIASASSDKTVKLW 576
Score = 244 bits (624), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 224/433 (51%), Gaps = 37/433 (8%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
L++H + + F G + S D+T KLW+ ++G + T GH + V+ VAFS P G
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDG 69
Query: 243 --CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 300
+ S D+T KLW+ ++G + T GH + V VAFS P G I + S DKT+KLW +
Sbjct: 70 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLW-N 126
Query: 301 AKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS 357
+ +QT GHS+ V FSPD T S S D T +++N N GQ + TL H+ V
Sbjct: 127 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG 185
Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
+ FS D + + S D ++ +W+ Q + LTGHS +
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGHSSSVRGVA 228
Query: 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
F+ IAS+S D T KLW+ R TL H V +AF G +A+AS D+T
Sbjct: 229 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
LW G +LLQT GHS S V +AF G +A+AS D+T KLW G + LQT
Sbjct: 288 LWNRNG--QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QHLQTL 340
Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT 597
GHS+ V V+F P G+ + S S D T +LW+ +G+ +Q L H V F+ +G T
Sbjct: 341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 598 IITASKDNTCCIW 610
I +AS D T +W
Sbjct: 400 IASASDDKTVKLW 412
Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/436 (36%), Positives = 223/436 (51%), Gaps = 37/436 (8%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 239
+ L H + + F G + S D+T KLW+ ++G + T GH + V VAFS
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS- 107
Query: 240 PYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
P G + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DKT+KL
Sbjct: 108 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKL 165
Query: 298 WASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
W + + +QT GHS+ V FSPD T S S D T +++N N GQ + TL H+
Sbjct: 166 W-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 223
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
V + FS D + + S D ++ +W+ Q + LTGHS ++
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGHSSSVN 266
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
F IAS+S D T KLW+ R TL H V +AF G +A+AS D+
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 325
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
T LW G + LQT GHS S V +AF G +A+AS D+T KLW G +LL
Sbjct: 326 TVKLWNRNG--QHLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 378
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
QT GHS+ V V+F P G+ + S S D T +LW+ +G+ +Q L H V+ F+ +
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 437
Query: 595 GDTIITASKDNTCCIW 610
TI +AS D T +W
Sbjct: 438 DQTIASASDDKTVKLW 453
Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 161/460 (35%), Positives = 230/460 (50%), Gaps = 44/460 (9%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 239
+ L H + + F G + S D+T KLW+ ++G + T GH + V+ VAFS
Sbjct: 91 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS- 148
Query: 240 PYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
P G + S D+T KLW+ ++G + T GH + V+ VAFS P G I + S DKT+KL
Sbjct: 149 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKL 206
Query: 298 WASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
W + + +QT GHS+ V FSPD T S S D T +++N N GQ + TL H+
Sbjct: 207 W-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 264
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQF-GTRNAYAESTYRASHKP----------- 402
V + F D + + S D ++ +W+ Q T ++ S + + P
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324
Query: 403 ------------IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
+ LTGHS + F+ IAS+S D T KLW+ R TL
Sbjct: 325 KTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG 383
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG 510
H V +AF G +A+AS D+T LW G +LLQT GHS S V +AF
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHS---SSVWGVAFSPDD 438
Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570
+A+AS D+T KLW G +LLQT GHS+ V V+F P G+ + S S D T +LW+
Sbjct: 439 QTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN- 495
Query: 571 ESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+G+ +Q L H V F+ +G TI +AS D T +W
Sbjct: 496 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 135/268 (50%), Gaps = 26/268 (9%)
Query: 343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402
+E + L+AH+ V + FS D + + S D ++ +W+ Q
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----------------- 49
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ LTGHS + F+ IAS+S D T KLW+ R TL H V +AF
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
G +A+AS D+T LW G +LLQT GHS S V +AF G +A+AS D+T
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTV 163
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
KLW G +LLQT GHS+ V V+F P G+ + S S D T +LW+ +G+ +Q L H
Sbjct: 164 KLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 220
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
V F+ +G TI +AS D T +W
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLW 248
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 132/266 (49%), Gaps = 28/266 (10%)
Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
+ + L H + + F G + S D+T KLW+ ++G + T GH + V VAF
Sbjct: 335 QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAF 393
Query: 238 SEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 295
S P G + S D+T KLW+ ++G + T GH + V+ VAFS P I + S DKT+
Sbjct: 394 S-PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTV 450
Query: 296 KLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT 352
KLW + + +QT GHS+ V FSPD T S S D T +++N N GQ + TL H+
Sbjct: 451 KLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHS 508
Query: 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE 412
V + FS D + + S D ++ +W+ Q + LTGHS
Sbjct: 509 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGHSSS 551
Query: 413 ISNCLFNFSNSMIASSSLDGTAKLWD 438
+ F+ IAS+S D T KLW+
Sbjct: 552 VWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 14 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 133 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 235
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 236 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 294 ALENDKTIKLWKSD 307
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 74 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 178 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 233
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 294 ALENDKTIKLWKS 306
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 5 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 61 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 119
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 180 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 223
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 224 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 283 CHPTENIIASAALENDKTIKLW 304
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 57
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 58 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 118 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 173
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 174 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 233 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 67
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 17 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 136 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 238
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 239 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 297 ALENDKTIKLWKSD 310
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 77 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 181 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 236
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 237 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 297 ALENDKTIKLWKS 309
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 8 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 122
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 183 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 226
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 227 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 286 CHPTENIIASAALENDKTIKLW 307
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 60
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 61 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 121 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 176
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 177 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 70
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 18 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 137 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 239
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 240 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 298 ALENDKTIKLWKSD 311
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 78 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 182 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 298 ALENDKTIKLWKS 310
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 9 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 123
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 227
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 228 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 61
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 122 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 177
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 178 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 71
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 84 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 304 ALENDKTIKLWKS 316
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 15 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 233
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 234 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 67
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 183
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 184 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 18 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 137 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 239
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 240 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 298 ALENDKTIKLWKSD 311
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 78 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 182 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 298 ALENDKTIKLWKS 310
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 9 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 123
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 227
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 228 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 287 CHPTENIIASAALENDKTIKLW 308
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 61
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 122 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 177
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 178 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 71
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 19 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 138 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 240
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 241 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 299 ALENDKTIKLWKSD 312
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 79 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 183 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 238
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 299 ALENDKTIKLWKS 311
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 10 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 65
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 66 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 124
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 185 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 228
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 229 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 288 CHPTENIIASAALENDKTIKLW 309
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 62
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 63 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 123 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 178
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 179 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 72
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 35 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 154 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 256
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 257 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 315 ALENDKTIKLWKSD 328
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 95 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 199 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 254
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 315 ALENDKTIKLWKS 327
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 26 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 82 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 140
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 201 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 244
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 245 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 304 CHPTENIIASAALENDKTIKLW 325
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 78
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 79 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 139 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 194
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 195 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 253
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 88
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 84 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 304 ALENDKTIKLWKS 316
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 15 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 233
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 234 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 67
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 183
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 184 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 42/139 (30%)
Query: 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK------------------- 554
A SS +K V L T GH+ VS V F P G+
Sbjct: 2 AMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 555 -----------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
L++S S D T ++W SG+C++ LK H + VF C F
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 592 NYNGDTIITASKDNTCCIW 610
N + I++ S D + IW
Sbjct: 122 NPQSNLIVSGSFDESVRIW 140
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 23 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 142 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 244
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 245 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 303 ALENDKTIKLWKSD 316
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 83 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 187 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 242
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 303 ALENDKTIKLWKS 315
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 14 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 69
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 70 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 128
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 189 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 232
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 233 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 292 CHPTENIIASAALENDKTIKLW 313
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 66
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 67 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 127 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 182
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 183 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 76
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 24 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 84 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 304 ALENDKTIKLWKS 316
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 15 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 71 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 129
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 190 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 233
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 234 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 293 CHPTENIIASAALENDKTIKLW 314
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 67
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 68 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 128 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 183
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 184 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 40 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 159 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 261
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 262 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 320 ALENDKTIKLWKSD 333
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 100 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 204 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 259
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 320 ALENDKTIKLWKS 332
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 31 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 86
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 87 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 145
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 249
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 250 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 309 CHPTENIIASAALENDKTIKLW 330
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 83
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 84 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 144 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 199
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 200 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 93
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 138 bits (348), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 42 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 161 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 263
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 264 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 322 ALENDKTIKLWKSD 335
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 102 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 206 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 261
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 322 ALENDKTIKLWKS 334
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 158/322 (49%), Gaps = 33/322 (10%)
Query: 169 LKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH 228
+K +A ++ L H ++++ F G + S D+ K+W G T GH
Sbjct: 33 VKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 88
Query: 229 QNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F+ P + I+
Sbjct: 89 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIV 147
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+GSFD+++++W +C++T HS V+ F+ D S S S D RI++T SGQ
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 345 MHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ TL P +S ++FS + ++ + D+++ +WD Y G K +
Sbjct: 208 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCL 251
Query: 404 HILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
TGH E C+F NFS I S S D +W+++T L+ H D V+ A
Sbjct: 252 KTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Query: 460 FDYSGSKLATAS--SDQTANLW 479
+ + +A+A+ +D+T LW
Sbjct: 311 CHPTENIIASAALENDKTIKLW 332
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 85
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 86 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 146 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 201
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 202 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 260
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 95
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + S DK +K+W + + +T GH ++V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ + S D +I+ G+ T+ H + + +SSD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 81 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 301 ALENDKTIKLWKS 313
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/331 (28%), Positives = 161/331 (48%), Gaps = 33/331 (9%)
Query: 160 QSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG 219
Q + + + +K +A ++ L H ++++ F G S D+ K+W G
Sbjct: 3 QQMGRGSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG 58
Query: 220 HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 278
T GH+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 279 SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTAR 335
+ P + I++GSFD+++++W +C++T HS V+ F+ D S S S D R
Sbjct: 119 N-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 336 IFNTNSGQEMHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394
I++T SGQ + TL P +S ++FS + ++ + D+++ +WD Y G
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG-------- 227
Query: 395 TYRASHKPIHILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
K + TGH E C+F NFS I S S D +W+++T L+
Sbjct: 228 ------KCLKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 451 HEDEVLDIAFDYSGSKLATAS--SDQTANLW 479
H D V+ A + + +A+A+ +D+T LW
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 132/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L S D I +W G + E T +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW------GAYDGKFEKT----------I 64
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 180
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 181 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA +S+D+ +W G E +T GH +S D+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 154/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + L HS +S FN S+I SSS DG ++WD +
Sbjct: 140 KTGMCLKT----------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 81 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 301 ALENDKTIKLWKS 313
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 29/308 (9%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
L H ++++ F G + S D+ K+W G T GH+ + VA+S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 243 CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 301
L + S D+T K+WD+ SG + T +GH N V+ F+ P + I++GSFD+++++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK 140
Query: 302 KEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS- 357
C++T HS V+ F+ D S S S D RI++T SGQ + TL P +S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
++FS + ++ + D+++ +WD Y G K + TGH E C+
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWD--YSKG--------------KCLKTYTGHKNE-KYCI 243
Query: 418 F-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS-- 471
F NFS I S S D +W+++T L+ H D V+ A + + +A+A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 472 SDQTANLW 479
+D+T LW
Sbjct: 304 NDKTIKLW 311
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 25/276 (9%)
Query: 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
M TL HT V S++FS + L + S D I +W G + E T
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT--------- 63
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
++GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+
Sbjct: 64 -ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
+ + + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRI 178
Query: 525 WTVGGAVELLQTFYGHSN-EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
W + L+T N VS V F P GK +L+ + D T +LW G+C++ H+
Sbjct: 179 WDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 584 DDVFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
++ + N++ G I++ S+DN IW ++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 142/280 (50%), Gaps = 29/280 (10%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG 227
K+ + ++EK + H L ++++ + ++ S D+T K+WD+ SG + T +G
Sbjct: 51 KIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 228 HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI 286
H N V+ F+ + +GS+D + ++WD+K+G + T H + V AV F+ G I
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD-GSLI 167
Query: 287 LTGSFDKTLKLWASAKEECIQTY----RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG 342
++ S+D ++W +A +C++T + V FSP+ + ++D+T ++++ + G
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 227
Query: 343 QEMHTLKAHTGP--VISLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
+ + T H I FS + +++GS D+ + +W++Q +
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ----------------T 271
Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSL--DGTAKLW 437
+ + L GH+ + + + + ++IAS++L D T KLW
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 42/137 (30%)
Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK--------------------- 554
+SS +K V L+ T GH+ VS V F P G+
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 555 ---------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
L++S S D T ++W SG+C++ LK H + VF C FN
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 594 NGDTIITASKDNTCCIW 610
+ I++ S D + IW
Sbjct: 121 QSNLIVSGSFDESVRIW 137
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
+ D T +L+ ++
Sbjct: 301 ALENDKTIKLYKSD 314
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 26/304 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 81 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 SKDN 605
+ +N
Sbjct: 301 ALEN 304
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 162/331 (48%), Gaps = 33/331 (9%)
Query: 160 QSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG 219
Q + + + +K +A ++ L H ++++ F G + S D+ K+W G
Sbjct: 3 QQMGRGSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 58
Query: 220 HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 278
T GH+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 279 SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTAR 335
+ P + I++GSFD+++++W +C++T HS V+ F+ D S S S D R
Sbjct: 119 N-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 336 IFNTNSGQEMHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394
I++T SGQ + TL P +S ++FS + ++ + D+++ +WD Y G
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG-------- 227
Query: 395 TYRASHKPIHILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
K + TGH E C+F NFS I S S D +W+++T L+
Sbjct: 228 ------KCLKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 451 HEDEVLDIAFDYSGSKLATAS--SDQTANLW 479
H D V+ A + + +A+A+ +D+T L+
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 64
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 180
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 181 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K + L HS +S FN S+I SSS DG ++WD +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D T LW + L+T+ GH NE
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
+ D T +L+ ++
Sbjct: 301 ALENDKTIKLFKSD 314
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 26/304 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 81 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D T KLW + L+T+ GH NE
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 SKDN 605
+ +N
Sbjct: 301 ALEN 304
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 161/330 (48%), Gaps = 33/330 (10%)
Query: 160 QSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG 219
Q + + + +K +A ++ L H ++++ F G + S D+ K+W G
Sbjct: 3 QQMGRGSEFVKPNYALKF----TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 58
Query: 220 HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 278
T GH+ + VA+S L + S D+T K+WD+ SG + T +GH N V+ F
Sbjct: 59 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 118
Query: 279 SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTAR 335
+ P + I++GSFD+++++W +C++T HS V+ F+ D S S S D R
Sbjct: 119 N-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 336 IFNTNSGQEMHTLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394
I++T SGQ + TL P +S ++FS + ++ + D+++ +WD Y G
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD--YSKG-------- 227
Query: 395 TYRASHKPIHILTGHSQEISNCLF-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
K + TGH E C+F NFS I S S D +W+++T L+
Sbjct: 228 ------KCLKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 451 HEDEVLDIAFDYSGSKLATAS--SDQTANL 478
H D V+ A + + +A+A+ +D+T L
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 25/274 (9%)
Query: 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
TL HT V S++FS + L + S D I +W G + E T +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT----------I 64
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
+GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+ +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
+ + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++W
Sbjct: 125 IVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRIWD 180
Query: 527 VGGAVELLQTFYGHSNE-VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
+ L+T N VS V F P GK +L+ + D T +LW G+C++ H+++
Sbjct: 181 TASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 239
Query: 586 VFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
+ N++ G I++ S+DN IW ++
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
+TL H V + F +G LA++S+D+ +W G E +T GH +S D+
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
A+ + L +AS D+T K+W V + L+T GHSN V +F+P L++SGS D +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
R+W ++G+C++ L AH D V + FN +G I+++S D C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
T GH V +V FS P G+ + + S DK +K+W + + +T GH ++V +S D
Sbjct: 21 TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
+ S S D T +I++ +SG+ + TLK H+ V F+ N++++GSFD S+ +WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + L HS +S FN S+I SSS DG ++WD +
Sbjct: 140 KTGMCLKT----------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
C TL + ++ + + F +G + A+ D LW + L+T+ GH NE
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
+ F +G K + + S D +W + E++Q GH++ V + HPT ++ S
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
+ D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 150/313 (47%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
T GH+ + V FSP+ S S D +I+ G+ T+ H + + +SSD
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
N+L++ S D ++ +WD+ +S K + L GHS + C FN +++
Sbjct: 81 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
I S S D + ++WDV+T C TL H D V + F+ GS + ++S D +W
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+ L+T N V + F +G + A+ D KLW + L+T+ GH NE
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
+ +F T GK ++SGS+D +W+ ++ E +Q L+ H D V S + + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
+ D T +W+S
Sbjct: 301 ALENDKTIKLWKS 313
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 150/308 (48%), Gaps = 29/308 (9%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
L H ++++ F G + S D+ K+W G T GH+ + VA+S
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 243 CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 301
L + S D+T K+WD+ SG + T +GH N V+ F+ P + I++GSFD+++++W
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVK 140
Query: 302 KEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS- 357
C++T HS V+ F+ D S S S D RI++T SGQ + TL P +S
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
++FS + ++ + D+ + +WD Y G K + TGH E C+
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWD--YSKG--------------KCLKTYTGHKNE-KYCI 243
Query: 418 F-NFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS-- 471
F NFS I S S D +W+++T L+ H D V+ A + + +A+A+
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 472 SDQTANLW 479
+D+T LW
Sbjct: 304 NDKTIKLW 311
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 133/276 (48%), Gaps = 25/276 (9%)
Query: 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
M TL HT V S++FS + L + S D I +W G + E T
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW------GAYDGKFEKT--------- 63
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
++GH IS+ ++ ++++ S+S D T K+WDV + C TLK H + V F+
Sbjct: 64 -ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
+ + + S D++ +W V + L+T HS+ VS V F+ GS + ++S D ++
Sbjct: 123 NLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAV---HFNRDGSLIVSSSYDGLCRI 178
Query: 525 WTVGGAVELLQTFYGHSN-EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
W + L+T N VS V F P GK +L+ + D +LW G+C++ H+
Sbjct: 179 WDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 584 DDVFSCGFNYN---GDTIITASKDNTCCIWRSMNRD 616
++ + N++ G I++ S+DN IW ++
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 141/280 (50%), Gaps = 29/280 (10%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG 227
K+ + ++EK + H L ++++ + ++ S D+T K+WD+ SG + T +G
Sbjct: 51 KIWGAYDGKFEK--TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKG 108
Query: 228 HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI 286
H N V+ F+ + +GS+D + ++WD+K+G + T H + V AV F+ G I
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD-GSLI 167
Query: 287 LTGSFDKTLKLWASAKEECIQTY----RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG 342
++ S+D ++W +A +C++T + V FSP+ + ++D+ ++++ + G
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG 227
Query: 343 QEMHTLKAHTGP--VISLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
+ + T H I FS + +++GS D+ + +W++Q +
Sbjct: 228 KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ----------------T 271
Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSL--DGTAKLW 437
+ + L GH+ + + + + ++IAS++L D T KLW
Sbjct: 272 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 42/137 (30%)
Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK--------------------- 554
+SS +K V L+ T GH+ VS V F P G+
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 555 ---------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
L++S S D T ++W SG+C++ LK H + VF C FN
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 594 NGDTIITASKDNTCCIW 610
+ I++ S D + IW
Sbjct: 121 QSNLIVSGSFDESVRIW 137
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 36/319 (11%)
Query: 311 GHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML 367
GH + VT F P S S S D T ++++ +G TLK HT V + F +L
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 368 ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427
+ S D +I +WD Q + I + GH +S+ + I S
Sbjct: 166 ASCSADMTIKLWDFQ----------------GFECIRTMHGHDHNVSSVSIMPNGDHIVS 209
Query: 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG---- 483
+S D T K+W+V+T C T H + V + + G+ +A+ S+DQT +W V
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 484 --------AVELL----QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
VE + ++ Y +E + G L + S D+T K+W V +
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
L T GH N V V FH GK +LS + D T R+W ++ C++ L AHE V S F
Sbjct: 330 -CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 592 NYNGDTIITASKDNTCCIW 610
+ ++T S D T +W
Sbjct: 389 HKTAPYVVTGSVDQTVKVW 407
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 159/368 (43%), Gaps = 61/368 (16%)
Query: 155 ITQLEQSIMKLQKKL-------------------KEGFAQRYEKFKMLKSHLLPLTNITF 195
+ +L++ +M+L+ KL KE + EK+ L H P+T + F
Sbjct: 58 VIRLQKKVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKY-ALSGHRSPVTRVIF 116
Query: 196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKL 254
+ ++ S D T K+WD ++G T +GH + V ++F L S D T KL
Sbjct: 117 HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 176
Query: 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 314
WD + I T GH + V +V+ P GD I++ S DKT+K+W C++T+ GH
Sbjct: 177 WDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Query: 315 EVTF-SPDQ--STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRN------ 365
V P+Q + SCS D T R++ + + L+ H V + ++ + +
Sbjct: 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 366 --------------MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
L++GS D +I +WD+ ++ + L GH
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDV----------------STGMCLMTLVGHDN 339
Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
+ LF+ I S + D T ++WD + C TL HE V + F + + T S
Sbjct: 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 472 SDQTANLW 479
DQT +W
Sbjct: 400 VDQTVKVW 407
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 41/292 (14%)
Query: 344 EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
E + L H PV + F +++++ S D++I VWD Y+ G
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD--YETGDFE-------------- 143
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
L GH+ + + F+ S ++AS S D T KLWD + C T+ H+ V ++ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
G + +AS D+T +W V ++TF GH V V + G+ +A+ S+DQT +
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRP---NQDGTLIASCSNDQTVR 259
Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHP--------------------TGKLVLSGSQDT 563
+W V E H + V +S+ P G +LSGS+D
Sbjct: 260 VWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 564 TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615
T ++W +G C+ L H++ V F+ G I++ + D T +W N+
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 7/198 (3%)
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC 444
G + E R K + L+GH ++ +F+ S++ S+S D T K+WD T
Sbjct: 85 LGQKRDPKEWIPRPPEK--YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF 142
Query: 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504
TLK H D V DI+FD+SG LA+ S+D T LW G E ++T +GH + VS V
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG-FECIRTMHGHDHNVSSV--- 198
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
+ +G + +AS D+T K+W V ++TF GH V V + G L+ S S D T
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 565 CRLWSTESGECIQVLKAH 582
R+W + EC L+ H
Sbjct: 258 VRVWVVATKECKAELREH 275
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 112/230 (48%), Gaps = 25/230 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
Q +E + + H +++++ G ++ S D+T K+W++++G+ + T+ GH+ V
Sbjct: 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239
Query: 235 VAFSEPYGCLTGS--YDRTCKLWDIKSGHEICTYRGHQNVVYAVAF---------SEPYG 283
V ++ G L S D+T ++W + + R H++VV +++ SE G
Sbjct: 240 VRPNQD-GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG 298
Query: 284 DK----------ILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSM 330
+ +L+GS DKT+K+W + C+ T GH V F SC+
Sbjct: 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
D T R+++ + + M TL AH V SL F ++TGS D ++ VW+
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIK 217
K L +H +T++ F K +TGS D+T K+W+ +
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 30/285 (10%)
Query: 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK 258
G R ++GS D T K+W +G + T GH V++ + ++GS DRT K+W+ +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAE 187
Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT- 317
+G I T GH + V + E ++++GS D TL++W +C+ GH A V
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
D S + D ++++ + +HTL+ HT V SLQF D +++GS D+SI
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
VWD++ T N IH LTGH S ++++ S + D T K+W
Sbjct: 303 VWDVE----TGNC------------IHTLTGHQSLTSG--MELKDNILVSGNADSTVKIW 344
Query: 438 DVRTMCCFYTLK---NHEDEVLDIAFDYSGSKLATASSDQTANLW 479
D++T C TL+ H+ V + F+ + + T+S D T LW
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 157/317 (49%), Gaps = 37/317 (11%)
Query: 267 RGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQ-ST 324
+GH + V+ + F G++I++GS D TLK+W++ +C++T GH+ V S + +
Sbjct: 115 KGHDDHVITCLQFC---GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 171
Query: 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ 384
S S D T +++N +G+ +HTL HT V + R +++GS D+++ VWDI+
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIE-- 227
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC 444
+ + +H+L GH + C+ + + S + D K+WD T C
Sbjct: 228 --------------TGQCLHVLMGHVAAV-RCV-QYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504
+TL+ H + V + FD G + + S D + +W V + T GH + S
Sbjct: 272 LHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTS----- 323
Query: 505 AFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD 562
+ + L + ++D T K+W + G ++ LQ H + V+ + F+ V++ S D
Sbjct: 324 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDD 381
Query: 563 TTCRLWSTESGECIQVL 579
T +LW ++GE I+ L
Sbjct: 382 GTVKLWDLKTGEFIRNL 398
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 124/240 (51%), Gaps = 22/240 (9%)
Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE 262
++GS DRT K+W+ ++G I T GH + V + E ++GS D T ++WDI++G
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR-VVSGSRDATLRVWDIETGQC 231
Query: 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPD 321
+ GH V V + G ++++G++D +K+W E C+ T +GH+ V + D
Sbjct: 232 LHVLMGHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
S S+D + R+++ +G +HTL H ++ N+L++G+ DS++ +WDI
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDI 346
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ T + +K Q CL F+ + + +SS DGT KLWD++T
Sbjct: 347 ------KTGQCLQTLQGPNK--------HQSAVTCL-QFNKNFVITSSDDGTVKLWDLKT 391
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 63/401 (15%)
Query: 232 VYAVAFSEPYGCLTGSYDRTCKLWDIKSG-----HEICTYRG--------HQNVVYAVAF 278
+Y ++F EP L + +TC+ W I + E C G + V+
Sbjct: 28 LYVLSFLEPKDLLQAA--QTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFI 85
Query: 279 SEPYGDK-ILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC-----SCSMDH 332
P+ I D W + + + +GH V FC S S D+
Sbjct: 86 HSPWKSAYIRQHRIDTN---WRRGELKSPKVLKGHDDHVITCLQ---FCGNRIVSGSDDN 139
Query: 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA 392
T ++++ +G+ + TL HTG V S Q N++I+GS D ++ VW+ +
Sbjct: 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE---------- 187
Query: 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE 452
+ + IH L GH+ + C+ + + S S D T ++WD+ T C + L H
Sbjct: 188 ------TGECIHTLYGHTSTV-RCM-HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
V + +D G ++ + + D +W L T GH+N V + + G
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRV-----YSLQFDGIH 291
Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572
+ + S D + ++W V + T GH + S + +++SG+ D+T ++W ++
Sbjct: 292 VVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKT 348
Query: 573 GECIQVLKA---HEDDVFSCGFNYNGDTIITASKDNTCCIW 610
G+C+Q L+ H+ V FN N +IT+S D T +W
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLW 387
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 201 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSG 260
R ++GS D T ++WDI++G + GH V V + + ++G+YD K+WD ++
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETE 269
Query: 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT-FS 319
+ T +GH N VY++ F G +++GS D ++++W CI T GH + +
Sbjct: 270 TCLHTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Query: 320 PDQSTFCSCSMDHTARIFNTNSGQEMHTLKA---HTGPVISLQFSSDRNMLITGSFDSSI 376
+ S + D T +I++ +GQ + TL+ H V LQF ++N +IT S D ++
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTV 384
Query: 377 VVWDIQYQFGTRN 389
+WD++ RN
Sbjct: 385 KLWDLKTGEFIRN 397
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 113/226 (50%), Gaps = 35/226 (15%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 239
+L H+ + + +D G R ++G+YD K+WD ++ + T +GH N VY++ F
Sbjct: 232 LHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG 289
Query: 240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 299
+ ++GS D + ++WD+++G+ I T GHQ++ + + + +++G+ D T+K+W
Sbjct: 290 IH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWD 345
Query: 300 SAKEECIQTYRG---HSAEVT-FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+C+QT +G H + VT +++ + S D T ++++ +G+ +
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI---------- 395
Query: 356 ISLQFSSDRNMLITGSFDSSIVVWDIQYQ-------FGTRNAYAES 394
RN++ S S VVW I+ G+RN E+
Sbjct: 396 --------RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 577 QVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613
+VLK H+D V +C + G+ I++ S DNT +W ++
Sbjct: 112 KVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAV 147
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/480 (23%), Positives = 200/480 (41%), Gaps = 70/480 (14%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 241
+++ H + + F + G R + D+T +++ ++G ++ + H++ V AFS
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 242 GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA 299
+ T S D+ K+WD +G + TY H V F+ +L TGS D LKLW
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 300 SAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHT-------LK 349
++EC T GH+ V FSPD SCS D T R+++ S E + L
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 350 AHTGP------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ P V +S+D + +I + + ++++DI T AE
Sbjct: 790 SEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH----TSGLLAE---------- 834
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
I TGH I C F+ + + + +LW++ + + H V + F
Sbjct: 835 -IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893
Query: 464 GSKLATASSDQTANLWTV-----GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
GS TAS DQT +W A+ L Q E ++ + G +L +
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953
Query: 519 DQTAKLWTV-------------------GGAVELLQ--------TFYGHSNEVSKVSFHP 551
Q L GA+++++ + GH V + F
Sbjct: 954 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT-IITASKDNTCCIW 610
GK ++S S+D+ ++W+ ++G+ + L+AH++ V F D+ +++ S D T +W
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVW 1070
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 28/306 (9%)
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
FS D SC D T ++F +G+++ +KAH V+ FSSD + + T S D +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF-NFSNS-MIASSSLDGTAK 435
+WD A+ K +H HS++++ C F N SN ++A+ S D K
Sbjct: 683 IWD----------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 436 LWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL----LQTF 491
LWD+ C T+ H + V F LA+ S+D T LW V A E ++ F
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 492 YGHSNEVSKVLDI-----AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
+ S + + +++ ++ G K+ A+ ++ L+ + + L + GH + +
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQY 845
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
F P L + LW+ +S + + H V F+ +G + +TAS D T
Sbjct: 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 607 CCIWRS 612
+W +
Sbjct: 906 IRVWET 911
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 77/411 (18%)
Query: 213 LWDIK-SGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTC-KLWDIKSGHEICTYRGH 269
L+DI SG + GH + + FS PY L + + C +LW+I S ++ RGH
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGH 881
Query: 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-------------------------- 303
+ V+ V FS P G LT S D+T+++W + K
Sbjct: 882 LSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 940
Query: 304 ---ECIQTYRGHSAEVTFSPDQSTFCSCSMDH-----------TARIFNTNSGQEMHTLK 349
+Q G + ++ + P+ C C H +I + + +
Sbjct: 941 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1000
Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ---YQFGTRNAYAESTYR--------- 397
H V +QF++D LI+ S DS I VW+ Q Y F + +R
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 398 ----ASHKPIHILTG--------HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF 445
+ K +++TG H + +C + + +S+S D TAK+W +
Sbjct: 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL-----LQTFYGHSNEVSK 500
+ LK H V AF G LAT + +W V L + G +
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180
Query: 501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP 551
V D+ F L +A K W V + QTFY + + K+ P
Sbjct: 1181 VTDVCFSPDSKTLVSAGG--YLKWWNVATG-DSSQTFYTNGTNLKKIHVSP 1228
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/455 (23%), Positives = 167/455 (36%), Gaps = 66/455 (14%)
Query: 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKLWDIKSGHE 262
TGS D KLWD+ T GH N V FS L S D T +LWD++S +E
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 263 ICTYRGHQNV-VYAVAFSEPY---------------GDKILTGSFDKTLKLWASAKEECI 306
R NV + ++ +P GDKI+ + +K L
Sbjct: 778 ----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833
Query: 307 QTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+ + GH + + FSP + ++N +S ++ + H V + FS D
Sbjct: 834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893
Query: 364 RNMLITGSFDSSIVVW-----------------DIQYQFGTRNAYAESTYRASHKPIHIL 406
+ +T S D +I VW D+ +Q A R + ++
Sbjct: 894 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG----LQLI 949
Query: 407 TGHSQEI--------SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDI 458
G + +I S C + +A DG K+ ++ F + H+ V I
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1009
Query: 459 AFDYSGSKLATASSDQTANLWT--VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
F G L ++S D +W G V F E K + D S+L +
Sbjct: 1010 QFTADGKTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQD---SRLLSW 1061
Query: 517 SSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
S D T K+W V G +E + F H V + S S D T ++WS +
Sbjct: 1062 SFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ LK H V F+ +G + T + IW
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 168/415 (40%), Gaps = 56/415 (13%)
Query: 206 SYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEP-------YGCLTGSYD-------- 249
S D T +LWD++S +E R NV + ++ +P C + S D
Sbjct: 762 SADGTLRLWDVRSANE----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 250 -RTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ 307
L+DI SG + GH + + FS PY + ++LW +
Sbjct: 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVA 876
Query: 308 TYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNT-----NSG-----------QEMHTL 348
RGH + V FSPD S+F + S D T R++ T NS QE T+
Sbjct: 877 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 936
Query: 349 KAHTGPVISLQFSSDR----NMLITGSFDSSIVVWDIQY-QFGTRNAYAESTYRASHKPI 403
+ LQ + + + L + ++Y FG + + +++
Sbjct: 937 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 996
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
GH + + + F + SSS D ++W+ +T + L+ H++ V D
Sbjct: 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQ 1054
Query: 464 GSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
S+L + S D T +W V G +E + F H VL A +K ++ S+D+TA
Sbjct: 1055 DSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQG---TVLSCAISSDATKFSSTSADKTA 1109
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
K+W+ + L GH+ V +F G L+ +G + R+W+ G+ +
Sbjct: 1110 KIWSFD-LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 22/244 (9%)
Query: 205 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEI 263
G D K+ ++ + + GH+ V + F ++ ++ S D ++W+ ++G +
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG-DY 1037
Query: 264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSP 320
+ HQ V F ++L+ SFD T+K+W + + H V S
Sbjct: 1038 VFLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Query: 321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
D + F S S D TA+I++ + +H LK H G V FS D +L TG + I +W+
Sbjct: 1096 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Query: 381 IQYQFGTRNAYAESTYRASHKPIHILTG---HSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+ ++ S PI + G H +++ F+ + + S+ G K W
Sbjct: 1156 V----------SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWW 1203
Query: 438 DVRT 441
+V T
Sbjct: 1204 NVAT 1207
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKLWDIK 258
+R L+ S+D T K+W++ +G + HQ V + A S + S D+T K+W
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK------------EECI 306
+ +GH V AFS G + TG + +++W + EE
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1174
Query: 307 QTYRGHSAEVTFSPDQSTFCS 327
T+ G +V FSPD T S
Sbjct: 1175 ATHGGWVTDVCFSPDSKTLVS 1195
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 508 YSGSKLATASSDQTAKL---WTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQD 562
Y +KL T +L W ++ L H++ V F G+ + S D
Sbjct: 577 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 636
Query: 563 TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
T +++ E+GE + +KAHED+V C F+ + I T S D IW S
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 114/480 (23%), Positives = 200/480 (41%), Gaps = 70/480 (14%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 241
+++ H + + F + G R + D+T +++ ++G ++ + H++ V AFS
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 242 GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA 299
+ T S D+ K+WD +G + TY H V F+ +L TGS D LKLW
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 300 SAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHT-------LK 349
++EC T GH+ V FSPD SCS D T R+++ S E + L
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 350 AHTGP------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
+ P V +S+D + +I + + ++++DI T AE
Sbjct: 797 SEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH----TSGLLAE---------- 841
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
I TGH I C F+ + + + +LW++ + + H V + F
Sbjct: 842 -IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 900
Query: 464 GSKLATASSDQTANLWTV-----GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
GS TAS DQT +W A+ L Q E ++ + G +L +
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 960
Query: 519 DQTAKLWTV-------------------GGAVELLQ--------TFYGHSNEVSKVSFHP 551
Q L GA+++++ + GH V + F
Sbjct: 961 GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1020
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT-IITASKDNTCCIW 610
GK ++S S+D+ ++W+ ++G+ + L+AH++ V F D+ +++ S D T +W
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVW 1077
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 28/306 (9%)
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
FS D SC D T ++F +G+++ +KAH V+ FSSD + + T S D +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF-NFSNS-MIASSSLDGTAK 435
+WD A+ K +H HS++++ C F N SN ++A+ S D K
Sbjct: 690 IWD----------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 436 LWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL----LQTF 491
LWD+ C T+ H + V F LA+ S+D T LW V A E ++ F
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 492 YGHSNEVSKVLDI-----AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
+ S + + +++ ++ G K+ A+ ++ L+ + + L + GH + +
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQY 852
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
F P L + LW+ +S + + H V F+ +G + +TAS D T
Sbjct: 853 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 607 CCIWRS 612
+W +
Sbjct: 913 IRVWET 918
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 154/411 (37%), Gaps = 77/411 (18%)
Query: 213 LWDIK-SGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTC-KLWDIKSGHEICTYRGH 269
L+DI SG + GH + + FS PY L + + C +LW+I S ++ RGH
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGH 888
Query: 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-------------------------- 303
+ V+ V FS P G LT S D+T+++W + K
Sbjct: 889 LSWVHGVMFS-PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV 947
Query: 304 ---ECIQTYRGHSAEVTFSPDQSTFCSCSMDH-----------TARIFNTNSGQEMHTLK 349
+Q G + ++ + P+ C C H +I + + +
Sbjct: 948 DNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV 1007
Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ---YQFGTRNAYAESTYR--------- 397
H V +QF++D LI+ S DS I VW+ Q Y F + +R
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 398 ----ASHKPIHILTG--------HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF 445
+ K +++TG H + +C + + +S+S D TAK+W +
Sbjct: 1068 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL-----LQTFYGHSNEVSK 500
+ LK H V AF G LAT + +W V L + G +
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1187
Query: 501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP 551
V D+ F L +A K W V + QTFY + + K+ P
Sbjct: 1188 VTDVCFSPDSKTLVSAGG--YLKWWNVATG-DSSQTFYTNGTNLKKIHVSP 1235
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 108/455 (23%), Positives = 167/455 (36%), Gaps = 66/455 (14%)
Query: 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKLWDIKSGHE 262
TGS D KLWD+ T GH N V FS L S D T +LWD++S +E
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 263 ICTYRGHQNV-VYAVAFSEPY---------------GDKILTGSFDKTLKLWASAKEECI 306
R NV + ++ +P GDKI+ + +K L
Sbjct: 785 ----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 840
Query: 307 QTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+ + GH + + FSP + ++N +S ++ + H V + FS D
Sbjct: 841 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 900
Query: 364 RNMLITGSFDSSIVVW-----------------DIQYQFGTRNAYAESTYRASHKPIHIL 406
+ +T S D +I VW D+ +Q A R + ++
Sbjct: 901 GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG----LQLI 956
Query: 407 TGHSQEI--------SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDI 458
G + +I S C + +A DG K+ ++ F + H+ V I
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI 1016
Query: 459 AFDYSGSKLATASSDQTANLWT--VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
F G L ++S D +W G V F E K + D S+L +
Sbjct: 1017 QFTADGKTLISSSEDSVIQVWNWQTGDYV-----FLQAHQETVKDFRLLQD---SRLLSW 1068
Query: 517 SSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
S D T K+W V G +E + F H V + S S D T ++WS +
Sbjct: 1069 SFDGTVKVWNVITGRIE--RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ LK H V F+ +G + T + IW
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 168/415 (40%), Gaps = 56/415 (13%)
Query: 206 SYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEP-------YGCLTGSYD-------- 249
S D T +LWD++S +E R NV + ++ +P C + S D
Sbjct: 769 SADGTLRLWDVRSANE----RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 824
Query: 250 -RTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ 307
L+DI SG + GH + + FS PY + ++LW +
Sbjct: 825 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVA 883
Query: 308 TYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNT-----NSG-----------QEMHTL 348
RGH + V FSPD S+F + S D T R++ T NS QE T+
Sbjct: 884 DCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETM 943
Query: 349 KAHTGPVISLQFSSDR----NMLITGSFDSSIVVWDIQY-QFGTRNAYAESTYRASHKPI 403
+ LQ + + + L + ++Y FG + + +++
Sbjct: 944 VLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF 1003
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
GH + + + F + SSS D ++W+ +T + L+ H++ V D
Sbjct: 1004 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRL-LQ 1061
Query: 464 GSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
S+L + S D T +W V G +E + F H VL A +K ++ S+D+TA
Sbjct: 1062 DSRLLSWSFDGTVKVWNVITGRIE--RDFTCHQG---TVLSCAISSDATKFSSTSADKTA 1116
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
K+W+ + L GH+ V +F G L+ +G + R+W+ G+ +
Sbjct: 1117 KIWSFD-LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 22/244 (9%)
Query: 205 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEI 263
G D K+ ++ + + GH+ V + F ++ ++ S D ++W+ ++G +
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG-DY 1044
Query: 264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSP 320
+ HQ V F ++L+ SFD T+K+W + + H V S
Sbjct: 1045 VFLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Query: 321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
D + F S S D TA+I++ + +H LK H G V FS D +L TG + I +W+
Sbjct: 1103 DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Query: 381 IQYQFGTRNAYAESTYRASHKPIHILTG---HSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+ ++ S PI + G H +++ F+ + + S+ G K W
Sbjct: 1163 V----------SDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWW 1210
Query: 438 DVRT 441
+V T
Sbjct: 1211 NVAT 1214
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKLWDIK 258
+R L+ S+D T K+W++ +G + HQ V + A S + S D+T K+W
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK------------EECI 306
+ +GH V AFS G + TG + +++W + EE
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGT 1181
Query: 307 QTYRGHSAEVTFSPDQSTFCS 327
T+ G +V FSPD T S
Sbjct: 1182 ATHGGWVTDVCFSPDSKTLVS 1202
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 508 YSGSKLATASSDQTAKL---WTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQD 562
Y +KL T +L W ++ L H++ V F G+ + S D
Sbjct: 584 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 643
Query: 563 TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
T +++ E+GE + +KAHED+V C F+ + I T S D IW S
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V+ + D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + + L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 65 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + M+TL A V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F + AE
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 43/305 (14%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V+S+ +M+I+GS D +I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 466 KL--ATASSDQTANLWTVGGAVELLQTFYGHSNEVSK-VLDIAFDYSGSKLATASSDQTA 522
L ATA+ + +L +L F G+S + +A+ G L +D
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 523 KLWTV 527
++W V
Sbjct: 311 RVWQV 315
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH S V+ + D S + + S D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 23/224 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
+ Y++F KS ++ ++ DK + ++GS D+T K+W IK G + T GH + V
Sbjct: 98 ETYQRFVGHKSDVM---SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153
Query: 235 V-------AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
V A + ++ D+ K W++ + GH + + + S P G I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIA 212
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
+ D + LW A ++ + T + FSP++ + + ++F+ + +
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLV 271
Query: 346 HTL--------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
L KA +SL +S+D L G D+ I VW +
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 51
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V+ + D
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 112 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + + L
Sbjct: 170 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 229 SA-QDEVFSLAFSPN 242
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 59 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 117 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + M+TL A V
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 234
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F + AE
Sbjct: 235 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 280
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 43/305 (14%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V+S+ +M+I+GS D +I
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 186 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRY 244
Query: 466 KL--ATASSDQTANLWTVGGAVELLQTFYGHSNEVSK-VLDIAFDYSGSKLATASSDQTA 522
L ATA+ + +L +L F G+S + +A+ G L +D
Sbjct: 245 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 523 KLWTV 527
++W V
Sbjct: 305 RVWQV 309
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH S V+ + D S + + S D
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 122
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 123 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 23/224 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
+ Y++F KS ++ ++ DK + ++GS D+T K+W IK G + T GH + V
Sbjct: 92 ETYQRFVGHKSDVM---SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 147
Query: 235 V-------AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
V A + ++ D+ K W++ + GH + + + S P G I
Sbjct: 148 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIA 206
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
+ D + LW A ++ + T + FSP++ + + ++F+ + +
Sbjct: 207 SAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLV 265
Query: 346 HTL--------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
L KA +SL +S+D L G D+ I VW +
Sbjct: 266 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V+ + D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + + L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 65 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + M+TL A V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F + AE
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 40/247 (16%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V+S+ +M+I+GS D +I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 466 KLATASS 472
LA A++
Sbjct: 251 WLAAATA 257
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH S V+ + D S + + S D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 23/222 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
+ Y++F KS ++ ++ DK + ++GS D+T K+W IK G + T GH + V
Sbjct: 98 ETYQRFVGHKSDVM---SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153
Query: 235 V-------AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
V A + ++ D+ K W++ + GH + + + S P G I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIA 212
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
+ D + LW A ++ + T + FSP++ + + ++F+ + +
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLV 271
Query: 346 HTL--------KAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
L KA +SL +S+D L G D+ I VW
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V+ + D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + + L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 65 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + M+TL A V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F +A AE
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAE 286
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 40/247 (16%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V+S+ +M+I+GS D +I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 466 KLATASS 472
LA A++
Sbjct: 251 WLAAATA 257
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH S V+ + D S + + S D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 23/224 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
+ Y++F KS ++ ++ DK + ++GS D+T K+W IK G + T GH + V
Sbjct: 98 ETYQRFVGHKSDVM---SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153
Query: 235 V-------AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
V A + ++ D+ K W++ + GH + + + S P G I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIA 212
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
+ D + LW A ++ + T + FSP++ + + ++F+ + +
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLV 271
Query: 346 HTLK-------AHTGP-VISLQFSSDRNMLITGSFDSSIVVWDI 381
L+ A P +SL +S+D L G D+ I VW +
Sbjct: 272 DDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V+ + D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + + L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 65 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + M+TL A V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EV 240
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F + AE
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 130/305 (42%), Gaps = 43/305 (14%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V+S+ +M+I+GS D +I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL-SAQDEVFSLAFSPNRY 250
Query: 466 KL--ATASSDQTANLWTVGGAVELLQTFYGHSNEVSK-VLDIAFDYSGSKLATASSDQTA 522
L ATA+ + +L +L F G+S + +A+ G L +D
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 523 KLWTV 527
++W V
Sbjct: 311 RVWQV 315
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH S V+ + D S + + S D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 23/224 (10%)
Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
+ Y++F KS ++ ++ DK + ++GS D+T K+W IK G + T GH + V
Sbjct: 98 ETYQRFVGHKSDVM---SVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ 153
Query: 235 V-------AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
V A + ++ D+ K W++ + GH + + + S P G I
Sbjct: 154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIA 212
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
+ D + LW A ++ + T + FSP++ + + ++F+ + +
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLV 271
Query: 346 HTL--------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
L KA +SL +S+D L G D+ I VW +
Sbjct: 272 DDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 25/285 (8%)
Query: 202 CLTGSYDRTCKLWDIKSGHEICTY--RGHQNVVYAVAFSE--PYGCLTGSYDRTCKLWDI 257
+TGS D K+W + + GHQ V +V S P + S D +LWD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAA-SSSLDAHIRLWDL 109
Query: 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECIQTYRGHSA 314
++G +I + + +AFS P + TG+ + ++ + KE + T
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
+ +SPD S ++D IF+ +G+ +HTL+ H P+ SL FS D +L+T S D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
I ++D+Q+ A T L+GH+ + N F ++ SSS D +
Sbjct: 229 YIKIYDVQH------ANLAGT----------LSGHASWVLNVAFCPDDTHFVSSSSDKSV 272
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
K+WDV T C +T +H+D+V + ++ +GSK+ + DQ +++
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 35/307 (11%)
Query: 226 RGHQNVVYAVAFS-----EPYGCLTGSYDRTCKLWDIKSGHEICTY--RGHQNVVYAVAF 278
+ H + +++VA+ +TGS D K+W + + GHQ V +V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 279 SE--PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHT 333
S P + S D ++LW + I++ + + FSPD + +
Sbjct: 89 SHTLPIA---ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393
IF SG++ ++L ++S+ +S D L +G+ D I ++DI
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI------------ 193
Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
A+ K +H L GH+ I + F+ + ++ ++S DG K++DV+ TL H
Sbjct: 194 ----ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
VL++AF + ++SSD++ +W V G + TF+ H ++V V ++ +GSK+
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTCVHTFFDHQDQVWGV---KYNGNGSKI 305
Query: 514 ATASSDQ 520
+ DQ
Sbjct: 306 VSVGDDQ 312
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 125/292 (42%), Gaps = 25/292 (8%)
Query: 151 TASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRT 210
+ +V+T ++K+ K E ++ L+ H L + ++ + S D
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWS----LEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 211 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGH 269
+LWD+++G +I + + +AFS L TG++ ++ ++SG + +
Sbjct: 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR 163
Query: 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFC 326
+ ++A+S P G + +G+ D + ++ A + + T GH+ + TFSPD
Sbjct: 164 GKFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG 386
+ S D +I++ TL H V+++ F D ++ S D S+ VWD+ G
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV----G 278
Query: 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
TR +H H ++ +N + S I S D ++D
Sbjct: 279 TRTC------------VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 61/347 (17%)
Query: 267 RGHQNVVYAVAFS---EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQS 323
+ H + +++VA+ + + ++TGS D +K+W +R ++ +S
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW---------KWRDERLDLQWS---- 75
Query: 324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY 383
L+ H V+S+ S + + S D+ I +WD++
Sbjct: 76 ------------------------LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE- 110
Query: 384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC 443
+ K I + + F+ + +A+ + G ++ V +
Sbjct: 111 ---------------NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLD 503
Y+L +L IA+ G LA+ + D N++ + +LL T GH+ +
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRS--- 211
Query: 504 IAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDT 563
+ F L TAS D K++ V A L T GH++ V V+F P +S S D
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK 270
Query: 564 TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ ++W + C+ H+D V+ +N NG I++ D I+
Sbjct: 271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+T RGH A++ + D S S D I+++ + ++H + + V++ ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
N + G D+ + Y TR E R S + L GH+ +S C F ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
I +SS D T LWD+ T T H +V+ ++ + + D +A LW V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
+ QTF GH ++++ I F +G+ AT S D T +L+ + EL+ Y H N
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
++ VSF +G+L+L+G D C +W + VL H++ V G +G + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
S D+ IW
Sbjct: 330 GSWDSFLKIW 339
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 28/312 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPD 321
T RGH +YA+ + +++ S D L +W S + S+ V ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 322 QSTFCSCSMDHTARIFN--TNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
+ +D+ I+N T G + L HTG + +F D N ++T S D++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCA 167
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WDI+ T H+ ++ + + S + D +AKLW
Sbjct: 168 LWDIETGQQTTTFTG----------------HTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497
DVR C T HE ++ I F +G+ AT S D T L+ + EL+ Y H N
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVL 557
+ + ++F SG L D +W A + GH N VS + G V
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 558 SGSQDTTCRLWS 569
+GS D+ ++W+
Sbjct: 329 TGSWDSFLKIWN 340
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 35/278 (12%)
Query: 177 YEKFKMLKSHLLPLTN-----ITFDKFGTRCLTGSYDRTCKLWDIKSGH-EICTYR---G 227
++ + K H +PL + + G G D C ++++K+ + R G
Sbjct: 82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
H + F + +T S D TC LWDI++G + T+ GH V +++ + P +
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV 200
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+G+ D + KLW + C QT+ GH +++ F P+ + F + S D T R+F+ + QE
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 345 MHTLKAHTG---PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ T +H + S+ FS +L+ G D + VWD A RA
Sbjct: 261 LMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-----------ALKADRAG-- 306
Query: 402 PIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWD 438
+L GH +S CL + M +A+ S D K+W+
Sbjct: 307 ---VLAGHDNRVS-CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+T GH ++ + + +L++S SQD +W + + + + V +C + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 595 GDTIITASKDNTCCIWRSMNRD 616
G+ + DN C I+ R+
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+T RGH A++ + D S S D I+++ + ++H + + V++ ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
N + G D+ + Y TR E R S + L GH+ +S C F ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
I +SS D T LWD+ T T H +V+ ++ + + D +A LW V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
+ QTF GH ++++ I F +G+ AT S D T +L+ + EL+ Y H N
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
++ VSF +G+L+L+G D C +W + VL H++ V G +G + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
S D+ IW
Sbjct: 330 GSWDSFLKIW 339
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 28/312 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPD 321
T RGH +YA+ + +++ S D L +W S + S+ V ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 322 QSTFCSCSMDHTARIFN--TNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
+ +D+ I+N T G + L HTG + +F D N ++T S D++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCA 167
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WDI+ T H+ ++ + + S + D +AKLW
Sbjct: 168 LWDIETGQQTTTFTG----------------HTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497
DVR C T HE ++ I F +G+ AT S D T L+ + EL+ Y H N
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVL 557
+ + ++F SG L D +W A + GH N VS + G V
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 558 SGSQDTTCRLWS 569
+GS D+ ++W+
Sbjct: 329 TGSWDSFLKIWN 340
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 35/278 (12%)
Query: 177 YEKFKMLKSHLLPLTN-----ITFDKFGTRCLTGSYDRTCKLWDIKSGH-EICTYR---G 227
++ + K H +PL + + G G D C ++++K+ + R G
Sbjct: 82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
H + F + +T S D TC LWDI++G + T+ GH V +++ + P +
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV 200
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+G+ D + KLW + C QT+ GH +++ F P+ + F + S D T R+F+ + QE
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 345 MHTLKAHTG---PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ T +H + S+ FS +L+ G D + VWD A RA
Sbjct: 261 LMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-----------ALKADRAG-- 306
Query: 402 PIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWD 438
+L GH +S CL + M +A+ S D K+W+
Sbjct: 307 ---VLAGHDNRVS-CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+T GH ++ + + +L++S SQD +W + + + + V +C + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 595 GDTIITASKDNTCCIWRSMNRD 616
G+ + DN C I+ R+
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+T RGH A++ + D S S D I+++ + ++H + + V++ ++
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
N + G D+ + Y TR E R S + L GH+ +S C F ++
Sbjct: 120 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 166
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
I +SS D T LWD+ T T H +V+ ++ + + D +A LW V
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
+ QTF GH ++++ I F +G+ AT S D T +L+ + EL+ Y H N
Sbjct: 227 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 280
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
++ VSF +G+L+L+G D C +W + VL H++ V G +G + T
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 340
Query: 601 ASKDNTCCIW 610
S D+ IW
Sbjct: 341 GSWDSFLKIW 350
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 129/312 (41%), Gaps = 28/312 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPD 321
T RGH +YA+ + +++ S D L +W S + S+ V ++P
Sbjct: 61 TLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 322 QSTFCSCSMDHTARIFN--TNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
+ +D+ I+N T G + L HTG + +F D N ++T S D++
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCA 178
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WDI+ T H+ ++ + + S + D +AKLW
Sbjct: 179 LWDIETGQQTTTFTG----------------HTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497
DVR C T HE ++ I F +G+ AT S D T L+ + EL+ Y H N
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 280
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVL 557
+ + ++F SG L D +W A + GH N VS + G V
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 339
Query: 558 SGSQDTTCRLWS 569
+GS D+ ++W+
Sbjct: 340 TGSWDSFLKIWN 351
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 35/278 (12%)
Query: 177 YEKFKMLKSHLLPLTN-----ITFDKFGTRCLTGSYDRTCKLWDIKSGH-EICTYR---G 227
++ + K H +PL + + G G D C ++++K+ + R G
Sbjct: 93 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 152
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
H + F + +T S D TC LWDI++G + T+ GH V +++ + P +
Sbjct: 153 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV 211
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+G+ D + KLW + C QT+ GH +++ F P+ + F + S D T R+F+ + QE
Sbjct: 212 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
Query: 345 MHTLKAHTG---PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ T +H + S+ FS +L+ G D + VWD A RA
Sbjct: 272 LMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-----------ALKADRAG-- 317
Query: 402 PIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWD 438
+L GH +S CL + M +A+ S D K+W+
Sbjct: 318 ---VLAGHDNRVS-CLGVTDDGMAVATGSWDSFLKIWN 351
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+T GH ++ + + +L++S SQD +W + + + + V +C + +
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 595 GDTIITASKDNTCCIWRSMNRD 616
G+ + DN C I+ R+
Sbjct: 120 GNYVACGGLDNICSIYNLKTRE 141
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+T RGH A++ + D S S D I+++ + ++H + + V++ ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
N + G D+ + Y TR E R S + L GH+ +S C F ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
I +SS D T LWD+ T T H +V+ ++ + + D +A LW V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
+ QTF GH ++++ I F +G+ AT S D T +L+ + EL+ Y H N
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
++ VSF +G+L+L+G D C +W + VL H++ V G +G + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
S D+ IW
Sbjct: 330 GSWDSFLKIW 339
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 129/312 (41%), Gaps = 28/312 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPD 321
T RGH +YA+ + +L+ S D L +W S + S+ V ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 322 QSTFCSCSMDHTARIFN--TNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
+ +D+ I+N T G + L HTG + +F D N ++T S D++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCA 167
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WDI+ T H+ ++ + + S + D +AKLW
Sbjct: 168 LWDIETGQQTTTFTG----------------HTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497
DVR C T HE ++ I F +G+ AT S D T L+ + EL+ Y H N
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVL 557
+ + ++F SG L D +W A + GH N VS + G V
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 558 SGSQDTTCRLWS 569
+GS D+ ++W+
Sbjct: 329 TGSWDSFLKIWN 340
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 35/278 (12%)
Query: 177 YEKFKMLKSHLLPLTN-----ITFDKFGTRCLTGSYDRTCKLWDIKSGH-EICTYR---G 227
++ + K H +PL + + G G D C ++++K+ + R G
Sbjct: 82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
H + F + +T S D TC LWDI++G + T+ GH V +++ + P +
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV 200
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+G+ D + KLW + C QT+ GH +++ F P+ + F + S D T R+F+ + QE
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 345 MHTLKAHTG---PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ T +H + S+ FS +L+ G D + VWD A RA
Sbjct: 261 LMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-----------ALKADRAG-- 306
Query: 402 PIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWD 438
+L GH +S CL + M +A+ S D K+W+
Sbjct: 307 ---VLAGHDNRVS-CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+T GH ++ + + +L+LS SQD +W + + + + V +C + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 595 GDTIITASKDNTCCIWRSMNRD 616
G+ + DN C I+ R+
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
+T RGH A++ + D S S D I+++ + ++H + + V++ ++
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
N + G D+ + Y TR E R S + L GH+ +S C F ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
I +SS D T LWD+ T T H +V+ ++ + + D +A LW V
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
+ QTF GH ++++ I F +G+ AT S D T +L+ + EL+ Y H N
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
++ VSF +G+L+L+G D C +W + VL H++ V G +G + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
S D+ IW
Sbjct: 330 GSWDSFLKIW 339
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 129/312 (41%), Gaps = 28/312 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPD 321
T RGH +YA+ + +L+ S D L +W S + S+ V ++P
Sbjct: 50 TLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 322 QSTFCSCSMDHTARIFN--TNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
+ +D+ I+N T G + L HTG + +F D N ++T S D++
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCA 167
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WDI+ T H+ ++ + + S + D +AKLW
Sbjct: 168 LWDIETGQQTTTFTG----------------HTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497
DVR C T HE ++ I F +G+ AT S D T L+ + EL+ Y H N
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVL 557
+ + ++F SG L D +W A + GH N VS + G V
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 558 SGSQDTTCRLWS 569
+GS D+ ++W+
Sbjct: 329 TGSWDSFLKIWN 340
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 35/278 (12%)
Query: 177 YEKFKMLKSHLLPLTN-----ITFDKFGTRCLTGSYDRTCKLWDIKSGH-EICTYR---G 227
++ + K H +PL + + G G D C ++++K+ + R G
Sbjct: 82 WDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG 141
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287
H + F + +T S D TC LWDI++G + T+ GH V +++ + P +
Sbjct: 142 HTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA-PDTRLFV 200
Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQE 344
+G+ D + KLW + C QT+ GH +++ F P+ + F + S D T R+F+ + QE
Sbjct: 201 SGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Query: 345 MHTLKAHTG---PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ T +H + S+ FS +L+ G D + VWD A RA
Sbjct: 261 LMTY-SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-----------ALKADRAG-- 306
Query: 402 PIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWD 438
+L GH +S CL + M +A+ S D K+W+
Sbjct: 307 ---VLAGHDNRVS-CLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+T GH ++ + + +L+LS SQD +W + + + + V +C + +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 595 GDTIITASKDNTCCIWRSMNRD 616
G+ + DN C I+ R+
Sbjct: 109 GNYVACGGLDNICSIYNLKTRE 130
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
TL+ H G V SL S+ + N+L++ S D +++ W + +FG P
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
+ GHS + +C + S+S D T +LWDV T + H+ +V + D
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
S + + S D+T +WT+ G + L T GH++ VS+V + D + +A +D
Sbjct: 118 KASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
+ K W + ++ F GH++ ++ ++ P G L+ S +D LW+ + + L
Sbjct: 176 KXVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
A +D+VFS F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C 243
SH++ +T D G L+ S+D+T +LWD+ +G + GH++ V +V +
Sbjct: 65 SHIVQDCTLTAD--GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDK---ILTGSFDKTLKLW 298
++GS D+T K+W IK G + T GH + V V +E D I++ DK +K W
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAW 181
Query: 299 ASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
+ + + GH++ + T SPD + S D ++N + + +TL A V
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EV 240
Query: 356 ISLQFSSDRNMLITG--------SFDSSIVVWDIQYQFGTRNAYAE 393
SL FS +R L S D +V D++ +F + AE
Sbjct: 241 FSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAE 286
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 129/308 (41%), Gaps = 43/308 (13%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAEV--- 316
T GH V ++A S + +L+ S DKTL W ++ +++++GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
T + D + S S D T R+++ +G+ H V S+ + +I+GS D +I
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 377 VVWDIQYQ-----FGTRNAYAE----STYRASHKPIHILT-------------------- 407
VW I+ Q G + ++ +A + I++
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEAD 191
Query: 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
GH+ I+ + ++IAS+ DG LW++ YTL + +DEV +AF +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL-SAQDEVFSLAFSPNRY 250
Query: 466 KL--ATASSDQTANLWTVGGAVELLQTFYGHSNEVSK-VLDIAFDYSGSKLATASSDQTA 522
L ATA+ + +L +L F G+S + +A+ G L +D
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 523 KLWTVGGA 530
++W V A
Sbjct: 311 RVWQVXTA 318
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
L GH+ +++ + +++ S+S D T W D + + K H V D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ +AS D+T LW V E Q F GH ++V V DI D S + + S D
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVXSV-DI--DKKASXIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
+T K+WT+ G + L T GH++ VS+V P K ++S D + W+
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+ H ++ + + +G I +A KD +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 20/221 (9%)
Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV-- 235
E ++ H + ++ DK + ++GS D+T K+W IK G + T GH + V V
Sbjct: 98 ETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRV 156
Query: 236 -----AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 290
A + ++ D+ K W++ + GH + + + S P G I +
Sbjct: 157 VPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASAG 215
Query: 291 FDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL 348
D + LW A ++ T + FSP++ + + ++F+ + + L
Sbjct: 216 KDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGI-KVFSLDPQYLVDDL 274
Query: 349 --------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
KA +SL +S+D L G D+ I VW +
Sbjct: 275 RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 34/273 (12%)
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
+S Q +H + V LQ+ D +++G D++I +WD + +
Sbjct: 121 HSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD----------------KNT 162
Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
+ ILTGH+ + CL + +I + S D T ++WDV T TL +H + VL +
Sbjct: 163 LECKRILTGHTGSVL-CL-QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 460 FDYSGSKLATASSDQTANLWTVGGA--VELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS 517
F+ + T S D++ +W + + L + GH V+ V D+ + +AS
Sbjct: 221 FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-----DFDDKYIVSAS 273
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
D+T K+W E ++T GH ++ + + +LV+SGS D T RLW E G C++
Sbjct: 274 GDRTIKVWNTS-TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 330
Query: 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
VL+ HE ++ C ++ I++ + D +W
Sbjct: 331 VLEGHE-ELVRC-IRFDNKRIVSGAYDGKIKVW 361
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 43/307 (14%)
Query: 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT-FSPDQSTFCSCSMD 331
VY + + + KI++G D T+K+W EC + GH+ V D+ + S D
Sbjct: 136 VYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSD 192
Query: 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY 391
T R+++ N+G+ ++TL H V+ L+F++ M++T S D SI VWD+ +
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMA-------SP 243
Query: 392 AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH 451
+ T R +L GH ++ + +F + I S+S D T K+W+ T TL H
Sbjct: 244 TDITLR------RVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 295
Query: 452 EDEVLDIAFDYSGSKLATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFDYS 509
+ + Y + + SSD T LW + G + +L+ GH V I FD
Sbjct: 296 KRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRC---IRFD-- 345
Query: 510 GSKLATASSDQTAKLWTVGGAVE--------LLQTFYGHSNEVSKVSFHPTGKLVLSGSQ 561
++ + + D K+W + A++ L+T HS V ++ F ++S S
Sbjct: 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSH 403
Query: 562 DTTCRLW 568
D T +W
Sbjct: 404 DDTILIW 410
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 19/240 (7%)
Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE 262
+TGS D T ++WD+ +G + T H V + F+ +T S DR+ +WD+ S +
Sbjct: 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM-MVTCSKDRSIAVWDMASPTD 245
Query: 263 ICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT-F 318
I R GH+ V V F + Y I++ S D+T+K+W ++ E ++T GH +
Sbjct: 246 ITLRRVLVGHRAAVNVVDFDDKY---IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 302
Query: 319 SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV 378
S S D+T R+++ G + L+ H V ++F + R +++G++D I V
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKV 360
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
WD+ R R L HS + F I SSS D T +WD
Sbjct: 361 WDLVAALDPRAPAGTLCLRT-------LVEHSGRVFR--LQFDEFQIVSSSHDDTILIWD 411
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE 262
++GS D T +LWDI+ G + GH+ +V + F ++G+YD K+WD+ + +
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR-IVSGAYDGKIKVWDLVAALD 368
Query: 263 -------IC--TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS 313
+C T H V+ + F E +I++ S D T+ +W + Q S
Sbjct: 369 PRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWDFLNDPAAQAEPPRS 425
Query: 314 AEVTFS 319
T++
Sbjct: 426 PSRTYT 431
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 88/352 (25%), Positives = 161/352 (45%), Gaps = 33/352 (9%)
Query: 265 TYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV--TFSPD 321
T RGH +V+ + F + Y ++TG+ DK ++++ S ++ + GH V
Sbjct: 116 TLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM--LITGSFDSSIVVW 379
S S D T R+++ G H + H V L +N+ ++TGS D+++ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 380 DIQYQFGTRNAYAESTYR-ASHKP------IHILTGHSQEISNCLFNFSNSMIASSSLDG 432
+ + + E Y H P + +L GH + + +++ S S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290
Query: 433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492
T +WDV M C Y L H D + +D+ + +AS D T +W + EL+ T
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQ 349
Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF-YGHSNEVSKVSFHP 551
GH+ V S L +A++D + + W A + + F Y H+N + +F+
Sbjct: 350 GHTALVG-----LLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYV 401
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITA 601
+ +++SGS++ +++ SG+ + +LK D ++S N+ G T++ A
Sbjct: 402 SDNILVSGSEN-QFNIYNLRSGKLVHANILK-DADQIWSV--NFKGKTLVAA 449
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 147/322 (45%), Gaps = 46/322 (14%)
Query: 202 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH 261
+TG+ D+ +++D + + GH V+A+ ++ ++GS DRT ++WDIK G
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 262 EICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAKEECIQTY-RGHSAEVTF- 318
+ GH + V + E K I+TGS D TL +W KE + + H + F
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 319 SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV 378
+P+++ + + L+ H V ++ S N++++GS+D++++V
Sbjct: 255 TPEENPYF------------------VGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIV 294
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
WD+ A K ++IL+GH+ I + +++ S+S+D T ++WD
Sbjct: 295 WDV----------------AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Query: 439 VRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498
+ YTL+ H L S L +A++D + W A + + F H +
Sbjct: 339 LENGELMYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNL 393
Query: 499 SKVLDIAFDYSGSKLATASSDQ 520
S + F S + L + S +Q
Sbjct: 394 SAI--TTFYVSDNILVSGSENQ 413
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 50/268 (18%)
Query: 347 TLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
TL+ H VI+ LQF + N +ITG+ D I V+D + K +
Sbjct: 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYD----------------SINKKFLLQ 157
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV--LDIAFDYS 463
L+GH + L ++ S S D T ++WD++ CC + + H V LDI +Y
Sbjct: 158 LSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV-EYK 215
Query: 464 GSK-LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
K + T S D T ++W + + H E DY L + ++
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKE----SSVPDHGEE--------HDYP---LVFHTPEENP 260
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
+ VG GH V VS H G +V+SGS D T +W +C+ +L H
Sbjct: 261 --YFVG-------VLRGHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
D ++S +++ I+AS D T IW
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIW 337
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EP 240
+L+ H+ + ++ G ++GSYD T +WD+ + GH + +Y+ + E
Sbjct: 265 VLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER 322
Query: 241 YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 300
C++ S D T ++WD+++G + T +GH +V + S+ + +++ + D +++ W +
Sbjct: 323 KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGWDA 379
Query: 301 AKEECIQTYR--GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH 346
+Y SA TF + S S ++ I+N SG+ +H
Sbjct: 380 NDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
T GH V L +Y + T + D+ +++ LLQ GH V + +
Sbjct: 116 TLRGHMTSVITCLQFEDNY----VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 550 HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF--NYNGDTIITASKDNTC 607
G LV SGS D T R+W + G C V + H V N I+T S+DNT
Sbjct: 171 AHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 608 CIWR 611
+W+
Sbjct: 230 HVWK 233
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/470 (23%), Positives = 189/470 (40%), Gaps = 50/470 (10%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EP 240
+++ H + + F + G R + D+T +++ ++G ++ + H++ V AFS +
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 241 YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA 299
T S D+ K+W+ +G + TY H V F+ +L TGS D LKLW
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 300 SAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVI 356
++EC T GH+ V FSPD SCS D T ++++ S E ++ +
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLN 795
Query: 357 SLQFSSDRNMLI---TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413
D +++ + S D + ++ +N S I TGH I
Sbjct: 796 LEDPQEDMEVIVKCCSWSADGARIM------VAAKNKIFLFDIHTSGLLGEIHTGHHSTI 849
Query: 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD 473
C F+ N + + +LW+ + + H V + F GS T+S D
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDD 909
Query: 474 QTANLWTV-----GGAVELLQTFYGHSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTV 527
QT LW AV L Q E ++V+ +A D+ +L + Q L
Sbjct: 910 QTIRLWETKKVCKNSAVMLKQEVDVVFQE-NEVMVLAVDHIRRLQLINGRTGQIDYLTEA 968
Query: 528 -------------------GGAVELL--------QTFYGHSNEVSKVSFHPTGKLVLSGS 560
GA+E+L Q+ + H V + F K ++S S
Sbjct: 969 QVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSS 1028
Query: 561 QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
D ++W+ + +CI L+ H++ V N +++ S D T +W
Sbjct: 1029 DDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNS-RLLSWSFDGTVKVW 1076
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 138/317 (43%), Gaps = 31/317 (9%)
Query: 310 RGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM 366
R H+ V FS D SC D T ++F +G+++ +KAH V+ FS+D
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS--M 424
+ T S D + +W+ + + +H HS++++ C F S+ +
Sbjct: 678 IATCSVDKKVKIWN----------------SMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
+A+ S D KLWD+ C T+ H + V F LA+ S+D T LW A
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 485 VEL----LQTFYGHSNEVSKVLDI-----AFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535
E ++ F+ + + + +++ ++ G+++ A+ ++ L+ + + L +
Sbjct: 782 NERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGE 840
Query: 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNG 595
GH + + F P L + LW+T+S + + H V F+ +G
Sbjct: 841 IHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDG 900
Query: 596 DTIITASKDNTCCIWRS 612
+ +T+S D T +W +
Sbjct: 901 SSFLTSSDDQTIRLWET 917
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 31/357 (8%)
Query: 225 YRGHQNVVYAVAFSEPYGCLTGSYDRTC-KLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 283
+ GH + + FS + + C +LW+ S ++ RGH + V+ V FS P G
Sbjct: 842 HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFS-PDG 900
Query: 284 DKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQ 343
LT S D+T++LW + K+ C + EV ++ ++DH R
Sbjct: 901 SSFLTSSDDQTIRLWET-KKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRR-------- 951
Query: 344 EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY-QFGTRNAYAESTYRASHKP 402
+ + TG + + L + +QY FG N E +++
Sbjct: 952 -LQLINGRTGQI---------DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI 1001
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
H + + + F + SSS D ++W+ + C + L+ H++ V D
Sbjct: 1002 FQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL-L 1059
Query: 463 SGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT 521
S+L + S D T +W + G E + F H VL + +K ++ S+D+T
Sbjct: 1060 KNSRLLSWSFDGTVKVWNIITGNKE--KDFVCHQ---GTVLSCDISHDATKFSSTSADKT 1114
Query: 522 AKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQV 578
AK+W+ + L GH+ V +F L+ +G + R+W+ +GE + +
Sbjct: 1115 AKIWSFDLLLPL-HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHL 1170
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 540 HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTII 599
H++ V F G+ + S D T +++ E+GE + +KAHED+V C F+ + I
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 600 TASKDNTCCIWRSM 613
T S D IW SM
Sbjct: 680 TCSVDKKVKIWNSM 693
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTG-SYDRTCKLWDI 257
+R L+ S+D T K+W+I +G++ + HQ V + S + S D+T K+W
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF 1120
Query: 258 KSGHEICTYRGHQNVVYAVAFSE-----PYGD-----KILTGSFDKTLKLWASAKEECIQ 307
+ RGH V AFS GD +I S + L L A EE
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 308 TYRGHSAEVTFSPDQSTFCS 327
T+ G ++ FSPD S
Sbjct: 1181 THGGWVTDLCFSPDGKMLIS 1200
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 33/352 (9%)
Query: 265 TYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV--TFSPD 321
T RGH +V+ + F + Y ++TG+ DK ++++ S ++ + GH V
Sbjct: 116 TLRGHXTSVITCLQFEDNY---VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM--LITGSFDSSIVVW 379
S S D T R+++ G H + H V L +N+ ++TGS D+++ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 380 DIQYQFGTRNAYAESTYR-ASHKP------IHILTGHSQEISNCLFNFSNSMIASSSLDG 432
+ + + E Y H P + +L GH + + +++ S S D
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDN 290
Query: 433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492
T +WDV C Y L H D + +D+ + +AS D T +W + EL T
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG-ELXYTLQ 349
Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF-YGHSNEVSKVSFHP 551
GH+ V S L +A++D + + W A + + F Y H+N + +F+
Sbjct: 350 GHTALVG-----LLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYV 401
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITA 601
+ +++SGS++ +++ SG+ + +LK D ++S N+ G T++ A
Sbjct: 402 SDNILVSGSEN-QFNIYNLRSGKLVHANILKD-ADQIWSV--NFKGKTLVAA 449
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/322 (24%), Positives = 146/322 (45%), Gaps = 46/322 (14%)
Query: 202 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH 261
+TG+ D+ +++D + + GH V+A+ ++ ++GS DRT ++WDIK G
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC 194
Query: 262 EICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKTLKLWASAKEECIQTY-RGHSAEVTF- 318
+ GH + V + E K I+TGS D TL +W KE + + H + F
Sbjct: 195 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254
Query: 319 SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV 378
+P+++ + + L+ H V ++ S N++++GS+D++++V
Sbjct: 255 TPEENPYF------------------VGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIV 294
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
WD+ A K ++IL+GH+ I + +++ S+S D T ++WD
Sbjct: 295 WDV----------------AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Query: 439 VRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498
+ YTL+ H L S L +A++D + W A + + F H +
Sbjct: 339 LENGELXYTLQGH--TALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNL 393
Query: 499 SKVLDIAFDYSGSKLATASSDQ 520
S + F S + L + S +Q
Sbjct: 394 SAI--TTFYVSDNILVSGSENQ 413
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 50/268 (18%)
Query: 347 TLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
TL+ H VI+ LQF + N +ITG+ D I V+D + K +
Sbjct: 116 TLRGHXTSVITCLQF--EDNYVITGADDKXIRVYD----------------SINKKFLLQ 157
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV--LDIAFDYS 463
L+GH + L ++ S S D T ++WD++ CC + + H V LDI +Y
Sbjct: 158 LSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV-EYK 215
Query: 464 GSK-LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
K + T S D T ++W + + H E DY L + ++
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKE----SSVPDHGEE--------HDYP---LVFHTPEENP 260
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
+ VG GH V VS H G +V+SGS D T +W +C+ +L H
Sbjct: 261 --YFVG-------VLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
D ++S +++ I+AS D T IW
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIW 337
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGCLTGSYDRTCKLWDI 257
G ++GSYD T +WD+ + GH + +Y+ + E C++ S D T ++WD+
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR--GHSAE 315
++G T +GH +V + S+ + +++ + D +++ W + +Y SA
Sbjct: 340 ENGELXYTLQGHTALVGLLRLSDKF---LVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 396
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMH 346
TF + S S ++ I+N SG+ +H
Sbjct: 397 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
T GH V L +Y + T + D+ +++ LLQ GH V + +
Sbjct: 116 TLRGHXTSVITCLQFEDNY----VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 550 HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF--NYNGDTIITASKDNTC 607
G LV SGS D T R+W + G C V + H V N I+T S+DNT
Sbjct: 171 AHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 608 CIWR 611
+W+
Sbjct: 230 HVWK 233
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 241
+L H + + +D RC++ S D T ++WD+++G T +GH +V + S+ +
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF 364
Query: 242 GCLTGSYDRTCKLWD 256
++ + D + + WD
Sbjct: 365 -LVSAAADGSIRGWD 378
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
T++AHT V ++ D +++++ S D SI++W + AY + R
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD---DKAYGVAQRR-------- 425
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
LTGHS + + + + S S DG +LWD+ H +VL +AF
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 466 KLATASSDQTANLWTVGGAVE--LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
++ +AS D+T LW G + + + GH + VS V + + + +AS D+T K
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV-RFSPNTLQPTIVSASWDKTVK 544
Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
+W + +L T GH+ VS V+ P G L SG +D LW G+ + L+A+
Sbjct: 545 VWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 36/256 (14%)
Query: 148 PLITASVITQL--EQSIM--KLQKKLKE-GFAQRYEKFKMLKSHLLPLTNITFDKFGTRC 202
P+ A +I ++SI+ KL K K G AQR L H + ++ G
Sbjct: 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQR-----RLTGHSHFVEDVVLSSDGQFA 445
Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGCLTGSYDRTCKLWD----- 256
L+GS+D +LWD+ +G + GH V +VAFS + ++ S DRT KLW+
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 257 ---IKSGHEICTYRGHQNVVYAVAFS----EPYGDKILTGSFDKTLKLWASAKEECIQTY 309
I G E GH++ V V FS +P I++ S+DKT+K+W + + T
Sbjct: 506 KYTISEGGE-----GHRDWVSCVRFSPNTLQP---TIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 310 RGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM 366
GH+ + V SPD S S D +++ G+++++L+A++ + +L FS +R
Sbjct: 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYW 616
Query: 367 LITGSFDSSIVVWDIQ 382
L + + I +WD++
Sbjct: 617 LCAAT-EHGIKIWDLE 631
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 92/225 (40%), Gaps = 23/225 (10%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHS---AEV 316
T R H ++V A+A D I++ S DK++ LW K++ + GHS +V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
S D S S D R+++ +G HT V+S+ FS D +++ S D +I
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTA 434
+W N E Y S GH +S F N I S+S D T
Sbjct: 497 KLW---------NTLGECKYTISEGG----EGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
K+W++ TL H V +A GS A+ D LW
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 14/215 (6%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFY-----TLKNHEDEVLDIA 459
+ H+ ++ N+ +I S+S D + LW + Y L H V D+
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G + S D LW + V + F GH+ +V L +AF ++ +AS D
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVST-RRFVGHTKDV---LSVAFSLDNRQIVSASRD 493
Query: 520 QTAKLWTVGGAVE--LLQTFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGEC 575
+T KLW G + + + GH + VS V F P ++S S D T ++W+ + +
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
L H V + + +G + KD +W
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 447 TLKNHEDEVLDIAFDYSGSKL-ATASSDQTANLWTVG------GAVELLQTFYGHSNEVS 499
T++ H D V IA + + +AS D++ LW + G + + GHS+ V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ--RRLTGHSHFVE 434
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
D+ G + S D +LW + V + F GH+ +V V+F + ++S
Sbjct: 435 ---DVVLSSDGQFALSGSWDGELRLWDLAAGVST-RRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 560 SQDTTCRLWSTESGECIQVL----KAHEDDVFSCGFNYN--GDTIITASKDNTCCIWRSM 613
S+D T +LW+T GEC + + H D V F+ N TI++AS D T +W
Sbjct: 491 SRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 614 N 614
N
Sbjct: 550 N 550
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 36/328 (10%)
Query: 305 CIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS 361
C +T +GHS +V ++P+++ S S D ++N + Q+ H +K H V+ F+
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI-HILTGHSQEISNCLF-N 419
+ + G DS+ ++++ Q R + P+ +LTGH S+C +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQ----------ADRDGNMPVSRVLTGHKGYASSCQYVP 167
Query: 420 FSNSMIASSSLDGTAKLWDVRT---MCCFYT--LKNHEDEVLDIAFD-YSGSKLATASSD 473
+ + + S D T LWDV T + F + H +VL ++ + + + + S D
Sbjct: 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533
T LW + ++T++GH +++ V F G + T S D T +L+ + +
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHEGDINSV---KFFPDGQRFGTGSDDGTCRLFDMRTGHQ- 283
Query: 534 LQTFYGHSNE-------VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL----KAH 582
LQ + + V+ V+F +G+L+ +G + C +W T E + L +H
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
E + G + +G + T S D IW
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 33/325 (10%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECIQTYRGHSAEVTFSPD 321
T +GH VY++ ++ P + I++ S D L +W S K I+ + E F+P+
Sbjct: 61 TLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 322 QSTFCSCSMDHTARIFNTNSGQEM-------HTLKAHTGPVISLQFSSDRNM-LITGSFD 373
+ +D IFN +S + L H G S Q+ D+ LITGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDG 432
+ V+WD+ G R + S + +GH+ ++ + N N+ M S S D
Sbjct: 180 QTCVLWDVTT--GQRISIFGSEFP---------SGHTADVLSLSINSLNANMFISGSCDT 228
Query: 433 TAKLWDVR-TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF 491
T +LWD+R T T HE ++ + F G + T S D T L+ + +L Q +
Sbjct: 229 TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL-QVY 287
Query: 492 YG----HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT--VGGAVELLQTFYG-HSNEV 544
+ NE+ V +AF SG L S+ +W + V L T H +
Sbjct: 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347
Query: 545 SKVSFHPTGKLVLSGSQDTTCRLWS 569
S + G + +GS D ++W+
Sbjct: 348 SCLGLSSDGSALCTGSWDKNLKIWA 372
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 138/336 (41%), Gaps = 41/336 (12%)
Query: 224 TYRGHQNVVYAVAFS-EPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 282
T +GH VY++ ++ E ++ S D +W+ + + + H V AF+ P
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA-PN 119
Query: 283 GDKILTGSFDKTLKLWASAKE----------ECIQTYRGHSAEVTFSPDQST-FCSCSMD 331
G + G D ++ + + + ++G+++ + PDQ T + S D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 332 HTARIFNTNSGQEMHTL-----KAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQF 385
T +++ +GQ + HT V+SL +S + NM I+GS D+++ +WD+
Sbjct: 180 QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL---- 235
Query: 386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF 445
R + + + GH +I++ F + S DGT +L+D+RT
Sbjct: 236 -----------RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 446 YTLKNHEDE-------VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498
D V +AF SG L S+ +W A +L ++
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHE 344
Query: 499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
++ + GS L T S D+ K+W G +++
Sbjct: 345 GRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
Query: 200 TRCLTGSYDRTCKLWDIKSGHEICTY-----RGHQNVVYAVAFSEPYGCL--TGSYDRTC 252
TR +TGS D+TC LWD+ +G I + GH V +++ + + +GS D T
Sbjct: 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTV 230
Query: 253 KLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG 311
+LWD++ + + TY GH+ + +V F P G + TGS D T +L+ +Q Y
Sbjct: 231 RLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289
Query: 312 HS----------AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL----KAHTGPVIS 357
V FS + + +++T + + L +H G +
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349
Query: 358 LQFSSDRNMLITGSFDSSIVVW 379
L SSD + L TGS+D ++ +W
Sbjct: 350 LGLSSDGSALCTGSWDKNLKIW 371
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQN-------VVYAVAFS 238
H + ++ F G R TGS D TC+L+D+++GH++ Y + +V +VAFS
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS 307
Query: 239 EPYGCLTGSY-DRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTGSFDK 293
L Y + C +WD + H+ + + S G + TGS+DK
Sbjct: 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD-GSALCTGSWDK 366
Query: 294 TLKLWA 299
LK+WA
Sbjct: 367 NLKIWA 372
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 414 SNCLF---NFSNSMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDYSGSKL 467
S C F N + +++AS D ++W +C + H+ V +A+ G+ L
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 468 ATASSDQTANLWTVG-GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
A+AS D T +W E + T GH NEV V A+ SG+ LAT S D++ +W
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV---AWAPSGNLLATCSRDKSVWVWE 133
Query: 527 VG--GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE--CIQVLKAH 582
V E + H+ +V V +HP+ +L+ S S D T +L+ E + C L+ H
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIWR 611
E V+S F+ +G + + S D T IWR
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/328 (24%), Positives = 143/328 (43%), Gaps = 50/328 (15%)
Query: 281 PYGDKILTGSFDKTLKLWASAKEECI------QTYRGHSAEVTFSPDQSTFCSCSMDHTA 334
P G + + D+ +++W + + I + ++ +V +SP + S S D T
Sbjct: 26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85
Query: 335 RIFNTNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA 392
I+ N + + TL+ H V S+ ++ N+L T S D S+ VW++
Sbjct: 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD---------E 136
Query: 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW--DVRTMCCFYTLKN 450
E Y + +L H+Q++ + +++ S ++AS+S D T KL+ + C TL+
Sbjct: 137 EDEYEC----VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG 192
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWT--------------VGGAVELLQTFYG-HS 495
HE V +AFD SG +LA+ S D+T +W + + + T G HS
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY--------GHSNEVSKV 547
+ DIA+ LATA D +++ + Q + HS +V+ V
Sbjct: 253 R---TIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 548 SFHPTGK-LVLSGSQDTTCRLWSTESGE 574
+++P L+ S S D W + E
Sbjct: 310 AWNPKEPGLLASCSDDGEVAFWKYQRPE 337
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 9/165 (5%)
Query: 458 IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY--GHSNEVSKVLDIAFDYSGSKLAT 515
+A++ +G+ LA+ D+ +W G + ++ GH V KV A+ G+ LA+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV---AWSPCGNYLAS 78
Query: 516 ASSDQTAKLWTVG-GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG- 573
AS D T +W E + T GH NEV V++ P+G L+ + S+D + +W +
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 574 --ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
EC+ VL +H DV ++ + + + +AS D+T ++R D
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD 183
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 22/142 (15%)
Query: 176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC--TYRGHQNVVY 233
YE +L SH + ++ + + SYD T KL+ + +C T GH++ V+
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 234 AVAFSEPYG--CLTGSYDRTCKLW-DIKSGHE--------------ICTYRG-HQNVVYA 275
++AF +P G + S DRT ++W G+E ICT G H +Y
Sbjct: 199 SLAF-DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYD 257
Query: 276 VAFSEPYGDKILTGSFDKTLKL 297
+A+ + G + T D +++
Sbjct: 258 IAWCQLTG-ALATACGDDAIRV 278
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 123/285 (43%), Gaps = 52/285 (18%)
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
+ S+ FS D L TG+ D I +WDI+ + K + IL GH Q+I
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE----------------NRKIVMILQGHEQDIY 169
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATASSD 473
+ + S + S S D T ++WD+RT C TL + ED V +A K +A S D
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLD 228
Query: 474 QTANLW--TVGGAVELL----QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527
+ +W G VE L ++ GH + V V+ F G + + S D++ KLW +
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV---FTRDGQSVVSGSLDRSVKLWNL 285
Query: 528 -------------GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574
G E+ T+ GH + V V+ + +LSGS+D W +SG
Sbjct: 286 QNANNKSDSKTPNSGTCEV--TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 575 CIQVLKAHEDDVFSC--------GFNYNGDTIITASKDNTCCIWR 611
+ +L+ H + V S G YN T S D IW+
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYN--VFATGSGDCKARIWK 386
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 131/303 (43%), Gaps = 52/303 (17%)
Query: 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLT 245
L + ++ F G TG+ DR ++WDI++ + +GH+ +Y++ + P G ++
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVS 182
Query: 246 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC 305
GS DRT ++WD+++G T ++ V VA S G I GS D+ +++W S
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS----- 236
Query: 306 IQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRN 365
++ F +D E + H V S+ F+ D
Sbjct: 237 ----------------ETGFLVERLD-----------SENESGTGHKDSVYSVVFTRDGQ 269
Query: 366 MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNS 423
+++GS D S+ +W++Q NA +S + + +T GH + + ++
Sbjct: 270 SVVSGSLDRSVKLWNLQ------NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL-------ATASSDQTA 476
I S S D WD ++ L+ H + V+ +A +GS L AT S D A
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV-ANGSSLGPEYNVFATGSGDCKA 382
Query: 477 NLW 479
+W
Sbjct: 383 RIW 385
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 31/290 (10%)
Query: 344 EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
E+H HT V ++FS+D L TG ++ V + G+ A A+ P
Sbjct: 56 ELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV---YRVSDGSLVARLSDDSAANKDPE 112
Query: 404 HILTGHSQE----ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
++ T S I + F+ +A+ + D ++WD+ L+ HE ++ +
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 172
Query: 460 FDYSGSKLATASSDQTANLWTVG-GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
+ SG KL + S D+T +W + G L + + V+ V D G +A S
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGD--GKYIAAGSL 227
Query: 519 DQTAKLW--TVGGAVELL----QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE- 571
D+ ++W G VE L ++ GH + V V F G+ V+SGS D + +LW+ +
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Query: 572 -----------SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
SG C H+D V S N + I++ SKD W
Sbjct: 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 30/227 (13%)
Query: 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEP 240
+L+ H + ++ + G + ++GS DRT ++WD+++G T V AV+ +
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 241 YGCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 293
GS DR ++WD ++G E + GH++ VY+V F+ G +++GS D+
Sbjct: 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD-GQSVVSGSLDR 278
Query: 294 TLKLW----ASAKEE--------CIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFN 338
++KLW A+ K + C TY GH V + + S S D ++
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 339 TNSGQEMHTLKAHTGPVISLQFSS------DRNMLITGSFDSSIVVW 379
SG + L+ H VIS+ ++ + N+ TGS D +W
Sbjct: 339 KKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 455 VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY--SGSK 512
+ + F G LAT + D+ +W + +++ GH ++ + DY SG K
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDI-----YSLDYFPSGDK 179
Query: 513 LATASSDQTAKLWTVG-GAVELLQTFYGHSNEVSKVSFHP-TGKLVLSGSQDTTCRLWST 570
L + S D+T ++W + G L + + V+ V+ P GK + +GS D R+W +
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 571 ESGECIQVLKA-------HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
E+G ++ L + H+D V+S F +G ++++ S D + +W N
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 193 ITFDKFGTRCLTGSYDRTCKLWDIK------------SGHEICTYRGHQNVVYAVAFSEP 240
+ F + G ++GS DR+ KLW+++ SG TY GH++ V +VA ++
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 321
Query: 241 YG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-----PYGDKILTGSFDKT 294
L+GS DR WD KSG+ + +GH+N V +VA + P + TGS D
Sbjct: 322 DEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK 381
Query: 295 LKLWASAK 302
++W K
Sbjct: 382 ARIWKYKK 389
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 27/288 (9%)
Query: 323 STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ 382
S S S D T R+++ + + G + S+ + S++ +L+ G D+ I +
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI---NGV 86
Query: 383 YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM 442
F T + P++ L GH + C +F + ++ S S D TAK+W ++
Sbjct: 87 PLFAT----------SGEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDKTAKVWKEGSL 134
Query: 443 CCFYTLKNHEDEVLDI-AFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKV 501
Y L+ H V D +S +K TAS+D+T LW ++++TF G N+V +
Sbjct: 135 V--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ---NDKVIKTFSGIHNDVVRH 189
Query: 502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ 561
L + D + S+D KL ++L+T+ GH + V + P G +V G +
Sbjct: 190 LAVVDD---GHFISCSNDGLIKLVDXHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCG-E 244
Query: 562 DTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCI 609
D T R+WS E+G QV+ ++S NGD II S DN I
Sbjct: 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGD-IIVGSSDNLVRI 291
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 15/162 (9%)
Query: 224 TYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY---AVAFSE 280
T GHQ V +++F + ++GS+D+T K+W K G + + H V+ V+FSE
Sbjct: 99 TLIGHQGNVCSLSFQDGV-VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIF 337
+K LT S DKT+KLW + K I+T+ G +V D F SCS D ++
Sbjct: 156 ---NKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV 210
Query: 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
+ ++G + T + H V ++ + +++ G D ++ +W
Sbjct: 211 DXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIW 251
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVY---AVAFSEPYGCLTGSYDRTCKLWDIKS 259
++GS+D+T K+W K G + + H V+ V+FSE LT S D+T KLW ++
Sbjct: 118 ISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK-FLTASADKTIKLW--QN 172
Query: 260 GHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-- 316
I T+ G H +VV +A + ++ S D +KL + ++TY GH + V
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDD--GHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 317 -TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
P+ SC D T RI++ +G + + S+ S+ ++++ GS D+
Sbjct: 231 IKLLPN-GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIV-GSSDNL 288
Query: 376 IVV 378
+ +
Sbjct: 289 VRI 291
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 511 SKLATASSDQTAKLWT-----VGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC 565
SK+A+ S D T +LW+ +G V Q F ++ V + +L+L G +DT
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF------LNSVCYDSEKELLLFGGKDTXI 83
Query: 566 R---LWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
L++T + + L H+ +V C ++ +I+ S D T +W+
Sbjct: 84 NGVPLFATSGEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDKTAKVWK 130
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SE 239
+ L+ H ++++ G L+GS+D T +LWD+ +G + GH V +VAF S+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 240 PYGCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SFDKT 294
++GS D+T KLW+ +C Y H V V FS + I+ +DK
Sbjct: 140 NRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196
Query: 295 LKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
+K+W A + + GH+ VT SPD S S D A +++ N G+ ++TL
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG- 255
Query: 352 TGPVI-SLQFSSDRNMLITGSFDSSIVVWDIQ 382
G +I +L FS +R L + SI +WD++
Sbjct: 256 -GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 285
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 347 TLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
TLK H G V + + +M+++ S D +I++W + TR+ E+ Y P
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-----TRD---ETNYGI---PQRA 81
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
L GHS +S+ + + S S DGT +LWD+ T H +VL +AF
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
++ + S D+T LW G + HS VS V + + S + + D+ K+W
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNPIIVSCGWDKLVKVW 200
Query: 526 TVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
+ +L GH+ ++ V+ P G L SG +D LW G+ + L +
Sbjct: 201 NLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 138/328 (42%), Gaps = 41/328 (12%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHS---AEV 316
T +GH V +A + + D IL+ S DKT+ +W ++E + RGHS ++V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
S D S S D T R+++ +G HT V+S+ FSSD +++GS D +I
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTA 434
+W N Y + HS+ +S F N SN +I S D
Sbjct: 153 KLW---------NTLGVCKYTVQDE------SHSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494
K+W++ H + + GS A+ D A LW + L +
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------Y 251
Query: 495 SNEVSKVLDIAFDYSGSK-LATASSDQTAKLWTVGGAV---ELLQTFYGHSNEV-----S 545
+ + +++ A +S ++ A++ + K+W + G + EL Q S++ +
Sbjct: 252 TLDGGDIIN-ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310
Query: 546 KVSFHPTGKLVLSGSQDTTCRLWSTESG 573
+++ G+ + +G D R+W G
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG------GAVELLQTFYGH 540
L T GH+ V+++ + +AS D+T +W + G + + GH
Sbjct: 30 LRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGH 85
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
S+ VS V G+ LSGS D T RLW +G + H DV S F+ + I++
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 601 ASKDNTCCIWRSM 613
S+D T +W ++
Sbjct: 146 GSRDKTIKLWNTL 158
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SE 239
+ L+ H ++++ G L+GS+D T +LWD+ +G + GH V +VAF S+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 240 PYGCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SFDKT 294
++GS D+T KLW+ +C Y H V V FS + I+ +DK
Sbjct: 117 NRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 173
Query: 295 LKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
+K+W A + + GH+ VT SPD S S D A +++ N G+ ++TL
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG- 232
Query: 352 TGPVI-SLQFSSDRNMLITGSFDSSIVVWDIQ 382
G +I +L FS +R L + SI +WD++
Sbjct: 233 -GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 262
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 347 TLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
TLK H G V + + +M+++ S D +I++W + TR+ E+ Y P
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-----TRD---ETNYGI---PQRA 58
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
L GHS +S+ + + S S DGT +LWD+ T H +VL +AF
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
++ + S D+T LW G + HS VS V + + S + + D+ K+W
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNPIIVSCGWDKLVKVW 177
Query: 526 TVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
+ +L GH+ ++ V+ P G L SG +D LW G+ + L +
Sbjct: 178 NLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 138/328 (42%), Gaps = 41/328 (12%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHS---AEV 316
T +GH V +A + + D IL+ S DKT+ +W ++E + RGHS ++V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 317 TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
S D S S D T R+++ +G HT V+S+ FSSD +++GS D +I
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTA 434
+W N Y + HS+ +S F N SN +I S D
Sbjct: 130 KLW---------NTLGVCKYTVQDE------SHSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494
K+W++ H + + GS A+ D A LW + L +
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL------Y 228
Query: 495 SNEVSKVLDIAFDYSGSK-LATASSDQTAKLWTVGGAV---ELLQTFYGHSNEV-----S 545
+ + +++ A +S ++ A++ + K+W + G + EL Q S++ +
Sbjct: 229 TLDGGDIIN-ALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 287
Query: 546 KVSFHPTGKLVLSGSQDTTCRLWSTESG 573
+++ G+ + +G D R+W G
Sbjct: 288 SLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG------GAVELLQTFY 538
+ L T GH+ V+++ + +AS D+T +W + G + +
Sbjct: 5 MTLRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALR 60
Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI 598
GHS+ VS V G+ LSGS D T RLW +G + H DV S F+ + I
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 599 ITASKDNTCCIWRSM 613
++ S+D T +W ++
Sbjct: 121 VSGSRDKTIKLWNTL 135
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 25/202 (12%)
Query: 203 LTGSYDRTCKLWDI----KSGHEICTYR---GHQNVVYAVAFS-EPYGCLTGSYDRTCKL 254
++GS D+T +W + ++G+ ++ GH + V +A S E ++ S+D+T +L
Sbjct: 43 ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102
Query: 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW--------ASAKEE-- 304
WD+++G + GHQ+ VY+VAFS P +IL+ ++ +KLW +SA++E
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 305 -----CIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ 359
C++ + P F S D +++NTN Q +T KAH V L
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLS 220
Query: 360 FSSDRNMLITGSFDSSIVVWDI 381
S + + TG D +++WDI
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDI 242
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 19/216 (8%)
Query: 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420
+ D +LI+GS D ++++W + + +N Y ++A LTGH+ +S+ +
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEE--EQNGYFGIPHKA-------LTGHNHFVSDLALSQ 86
Query: 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT 480
N SSS D T +LWD+RT + H+ EV +AF ++ +A +++ LW
Sbjct: 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 481 VGGAVELLQTFY-GHSNEVSKVLDIAFDYSGSKL-------ATASSDQTAKLWTVGGAVE 532
+ G + HS+ VS V S +K+ A+ D K+W +
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQ 204
Query: 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
+ TF H + V+ +S P GK + +G +D +W
Sbjct: 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 29/234 (12%)
Query: 405 ILTGHSQEISNCLFNFS------NSMIASSSLDGTAKLWDV--RTMCCFY-----TLKNH 451
IL GHS +++ + FS + ++ S S D T +W + ++ L H
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS 511
V D+A ++S D+T LW + + F GH +EV +AF
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEV---YSVAFSPDNR 131
Query: 512 KLATASSDQTAKLWTVGGAVELLQTFY-GHSNEVSKVSFHPTGK----------LVLSGS 560
++ +A +++ KLW + G + HS+ VS V + P K S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 561 QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
D ++W+T + + KAHE +V + NG I T KD IW +N
Sbjct: 192 WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 28/233 (12%)
Query: 268 GHQNVVYAV--AFSEPYGDK---ILTGSFDKTLKLWASAKEE-------CIQTYRGHS-- 313
GH + V ++ FS+ + +++GS DKT+ +W +EE + GH+
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 314 -AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372
+++ S + S S D T R+++ +G H V S+ FS D +++
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138
Query: 373 DSSIVVWDI----QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS 428
+ I +W+I ++ + +++ + PI Q + AS
Sbjct: 139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFA--------PYFASV 190
Query: 429 SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481
DG K+W+ YT K HE V ++ +G +AT D+ +W +
Sbjct: 191 GWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 129/302 (42%), Gaps = 43/302 (14%)
Query: 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD-----------IQYQFGTRNAYAES 394
TLK H V+ + + D+ +++ S D ++VWD + + AYA S
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 395 ---------TYRASHKPIHI------------LTGHSQEISNCLFNFSNSMIASSSLDGT 433
+ S P+ + H+ +S C F S+ I ++S DGT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 434 AKLWDVRTMCCFYTLKNHEDEVL--DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF 491
LWDV + + H +VL D+A +G+ + D+ A +W + + +Q F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF 236
Query: 492 YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV---SKVS 548
H ++V+ V + SG A+ S D T +L+ + E+ Y + + S V
Sbjct: 237 ETHESDVNSV---RYYPSGDAFASGSDDATCRLYDLRADREV--AIYSKESIIFGASSVD 291
Query: 549 FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCC 608
F +G+L+ +G D T +W G + +L HE+ V + + +G + S D+T
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 609 IW 610
+W
Sbjct: 352 VW 353
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 37/319 (11%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS---AKEECIQTYRGHSAEVTFSPD 321
T +GH N V + + + +I++ S D + +W S KE + ++P
Sbjct: 59 TLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 322 QSTFCSCSMDHTARIF------NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
+D+ ++ N N + ++ HT + + F++ ++T S D +
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL---FNFSNSMIASSSLDG 432
+WD++ S + + GH ++ CL + + + S D
Sbjct: 178 CALWDVE----------------SGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDK 220
Query: 433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492
A +WD+R+ C + HE +V + + SG A+ S D T L+ + E+ Y
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV--AIY 278
Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSNEVSKVSFH 550
+ + + F SG L +D T +W V G V +L +GH N VS +
Sbjct: 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL---FGHENRVSTLRVS 335
Query: 551 PTGKLVLSGSQDTTCRLWS 569
P G SGS D T R+W+
Sbjct: 336 PDGTAFCSGSWDHTLRVWA 354
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 95/224 (42%), Gaps = 31/224 (13%)
Query: 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE-----DEV 455
K L GH ++ + I SSS DG +WD F T K H V
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD-----SFTTNKEHAVTMPCTWV 109
Query: 456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---------- 505
+ A+ SG +A D +++ + TF + N +K +A
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPL--------TFDKNENMAAKKKSVAMHTNYLSACS 161
Query: 506 FDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP--TGKLVLSGSQDT 563
F S ++ TAS D T LW V +LLQ+F+GH +V + P TG +SG D
Sbjct: 162 FTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 564 TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTC 607
+W SG+C+Q + HE DV S + +GD + S D TC
Sbjct: 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATC 264
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 98/209 (46%), Gaps = 9/209 (4%)
Query: 179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA--VA 236
K K + H L+ +F + LT S D TC LWD++SG + ++ GH V +A
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205
Query: 237 FSEPYGC-LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 295
SE ++G D+ +WD++SG + + H++ V +V + P GD +GS D T
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATC 264
Query: 296 KLWASAKEECIQTYRGHS-----AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350
+L+ + + Y S + V FS + D+T +++ G + L
Sbjct: 265 RLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG 324
Query: 351 HTGPVISLQFSSDRNMLITGSFDSSIVVW 379
H V +L+ S D +GS+D ++ VW
Sbjct: 325 HENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 142/322 (44%), Gaps = 46/322 (14%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
MKL +K+ F+ R ++ K I F LT Y +LW+ ++ E+
Sbjct: 1 MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
+ + + V A F + + GS D ++++ +G ++ + H + + ++A +
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
+PY +L+GS D T+KLW + QT+ GH V F+P D STF S +D T
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
++++ GQ TG + + D+ +IT S D +I +WD Q T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449
A L GH +S +F+ + +I S S DGT K+W+ T TL
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 450 NHEDEVLDIAFDYSGSKLATAS 471
+ IA +G K AS
Sbjct: 268 VGLERSWCIATHPTGRKNYIAS 289
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
+ F P + + ++N + E+ +++ PV + +F + +N +I GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
I V++ Y G + E+ H I + + + + S S D T K
Sbjct: 79 IRVFN--YNTGEKVVDFEA--------------HPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
LW+ T + HE V+ +AF+ S A+ D+T +W++G + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
V+ V DY + TAS D T K+W + T GH + VS F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
HPT +++SGS+D T ++W++ E CI + + GF+ NG
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
T+++ D
Sbjct: 296 TVLSLGND 303
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
H D + IA + + + S D T LW L QTF GH + V+ +AF+
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
S A+ D+T K+W++G + G V+ V ++P +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
W ++ C+ L+ H +V F+ II+ S+D T IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCG 590
+++ +TF S+ V + FHPT VL+ LW+ E+ ++ ++ E V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 591 FNYNGDTIITASKD 604
F + II S D
Sbjct: 63 FIARKNWIIVGSDD 76
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+++ +TF SN +V I F + + T +LW VE+ ++ V
Sbjct: 3 LDIKKTF---SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-RSIQVTETPV 58
Query: 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD 604
F ++ GS D R+++ +GE + +AH D + S + +++ S D
Sbjct: 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 605 NTCCIWRSMN 614
T +W N
Sbjct: 119 LTVKLWNWEN 128
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 142/322 (44%), Gaps = 46/322 (14%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
MKL +K+ F+ R ++ K I F LT Y +LW+ ++ E+
Sbjct: 1 MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
+ + + V A F + + GS D ++++ +G ++ + H + + ++A +
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
+PY +L+GS D T+KLW + QT+ GH V F+P D STF S +D T
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
++++ GQ TG + + D+ +IT S D +I +WD Q T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449
A L GH +S +F+ + +I S S DGT K+W+ T TL
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 450 NHEDEVLDIAFDYSGSKLATAS 471
+ IA +G K AS
Sbjct: 268 VGLERSWCIATHPTGRKNYIAS 289
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
+ F P + + ++N + E+ +++ PV + +F + +N +I GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
I V++ Y G + E+ H I + + + + S S D T K
Sbjct: 79 IRVFN--YNTGEKVVDFEA--------------HPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
LW+ T + HE V+ +AF+ S A+ D+T +W++G + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
V+ V DY + TAS D T K+W + T GH + VS F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
HPT +++SGS+D T ++W++ E CI + + GF+ NG
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
T+++ D
Sbjct: 296 TVLSLGND 303
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
H D + IA + + + S D T LW L QTF GH + V+ +AF+
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
S A+ D+T K+W++G + G V+ V ++P +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
W ++ C+ L+ H +V F+ II+ S+D T IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCG 590
+++ +TF S+ V + FHPT VL+ LW+ E+ ++ ++ E V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 591 FNYNGDTIITASKD 604
F + II S D
Sbjct: 63 FIARKNWIIVGSDD 76
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+++ +TF SN +V I F + + T +LW VE+ ++ V
Sbjct: 3 LDIKKTF---SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-RSIQVTETPV 58
Query: 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD 604
F ++ GS D R+++ +GE + +AH D + S + +++ S D
Sbjct: 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 605 NTCCIWRSMN 614
T +W N
Sbjct: 119 LTVKLWNWEN 128
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 46/299 (15%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
MKL +K+ F+ R ++ K I F LT Y +LW+ ++ E+
Sbjct: 1 MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
+ + + V A F + + GS D ++++ +G ++ + H + + ++A +
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
+PY +L+GS D T+KLW + QT+ GH V F+P D STF S +D T
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
++++ GQ TG + + D+ +IT S D +I +WD Q T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
A L GH +S +F+ + +I S S DGT K+W+ T TL
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 125/308 (40%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
+ F P + + ++N + E+ +++ PV + +F + +N +I GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
I V++ Y K + H I + + + + S S D T K
Sbjct: 79 IRVFN---------------YNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
LW+ T + HE V+ +AF+ S A+ D+T +W++G + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
V+ V DY + TAS D T K+W + T GH + VS F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
HPT +++SGS+D T ++W++ E CI + + GF+ NG
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
T+++ D
Sbjct: 296 TVLSLGND 303
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
H D + IA + + + S D T LW L QTF GH + V+ +AF+
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
S A+ D+T K+W++G + G V+ V ++P +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
W ++ C+ L+ H +V F+ II+ S+D T IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/352 (21%), Positives = 138/352 (39%), Gaps = 44/352 (12%)
Query: 224 TYRGHQNVVYAVAF--SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
T+ + V + F +EP+ LT Y +LW+ ++ E+ + + + V A F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA- 65
Query: 282 YGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFN 338
+ I+ GS D ++++ E + + H + P + S S D T +++N
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 339 -TNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
N+ T + H V+ + F+ D + +G D ++ VW + +ST
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL----------GQST- 174
Query: 397 RASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
P LT + N + + + ++S D T K+WD +T C TL+ H
Sbjct: 175 -----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
V F + + + S D T +W + +V K L++ + S
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWN------------SSTYKVEKTLNVGLERS---- 273
Query: 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC 565
++ T + + + T N+ +S P GKLV SG ++
Sbjct: 274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCG 590
+++ +TF S+ V + FHPT VL+ LW+ E+ ++ ++ E V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGK 62
Query: 591 FNYNGDTIITASKD 604
F + II S D
Sbjct: 63 FIARKNWIIVGSDD 76
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+++ +TF SN +V I F + + T +LW VE+ ++ V
Sbjct: 3 LDIKKTF---SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV-RSIQVTETPV 58
Query: 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD 604
F ++ GS D R+++ +GE + +AH D + S + +++ S D
Sbjct: 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 605 NTCCIWRSMN 614
T +W N
Sbjct: 119 LTVKLWNWEN 128
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 46/299 (15%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
MKL +K+ F+ R ++ K I F LT Y ++W+ ++ E+
Sbjct: 1 MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVEIWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
+ + + V A F + + GS D ++++ +G ++ + H + + ++A +
Sbjct: 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
+PY +L+GS D T+KLW + QT+ GH V F+P D STF S +D T
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
++++ GQ TG + + D+ +IT S D +I +WD Q
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------- 216
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ + L GH +S +F+ + +I S S DGT K+W+ T TL
Sbjct: 217 ---------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
+ F P + + I+N + E+ +++ PV + +F + +N +I GS D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
I V++ Y K + H I + + + + S S D T K
Sbjct: 79 IRVFN---------------YNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
LW+ T + HE V+ +AF+ S A+ D+T +W++G + G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
V+ V DY + TAS D T K+W + T GH + VS F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
HPT +++SGS+D T ++W++ E CI + + GF+ NG
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
T+++ D
Sbjct: 296 TVLSLGND 303
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
H D + IA + + + S D T LW L QTF GH + V+ +AF+
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
S A+ D+T K+W++G + G V+ V ++P +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
W ++ C+ L+ H +V F+ II+ S+D T IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 44/352 (12%)
Query: 224 TYRGHQNVVYAVAF--SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
T+ + V + F +EP+ LT Y ++W+ ++ E+ + + + V A F
Sbjct: 8 TFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI-A 65
Query: 282 YGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFN 338
+ I+ GS D ++++ E + + H + P + S S D T +++N
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 339 -TNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
N+ T + H V+ + F+ D + +G D ++ VW + +ST
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL----------GQST- 174
Query: 397 RASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
P LT + N + + + ++S D T K+WD +T C TL+ H
Sbjct: 175 -----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS 229
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
V F + + + S D T +W + +V K L++ + S
Sbjct: 230 NVSFAVFHPTLPIIISGSEDGTLKIWN------------SSTYKVEKTLNVGLERS---- 273
Query: 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC 565
++ T + + + T N+ +S P GKLV SG ++
Sbjct: 274 WCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAA 325
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCG 590
+++ +TF S+ V + FHPT VL+ +W+ E+ ++ ++ E V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGK 62
Query: 591 FNYNGDTIITASKD 604
F + II S D
Sbjct: 63 FIARKNWIIVGSDD 76
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
+++ +TF SN +V I F + + T ++W VE+ ++ V
Sbjct: 3 LDIKKTF---SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV-RSIQVTETPV 58
Query: 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD 604
F ++ GS D R+++ +GE + +AH D + S + +++ S D
Sbjct: 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 605 NTCCIWRSMN 614
T +W N
Sbjct: 119 LTVKLWNWEN 128
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 35/230 (15%)
Query: 268 GHQNVVYAVAFSE--PYGDKILTGSFDKTLKLWASAKE----ECI-----QTYRGHSA-- 314
GH+ V ++A + K+++ S DKTL W + EC + GHSA
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 315 -EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD 373
+V S + + S S DH+ R++N +GQ + HT V+S+ FS D +++G D
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFS--NSMIASSS 429
+++ VW+++ + +H L+ H+ +S F+ S +I S
Sbjct: 131 NALRVWNVKGEC-----------------MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
D K+WD+ T LK H + V + GS A++ D A LW
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 14/211 (6%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFS 238
+ L+ H ++++ G ++ S+D + +LW++++G C Y+ GH V +VAFS
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ--CQYKFLGHTKDVLSVAFS 118
Query: 239 -EPYGCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDK--ILTGSFDKT 294
+ ++G D ++W++K RG H + V V FS P D I++G +D
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFS-PSLDAPVIVSGGWDNL 177
Query: 295 LKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
+K+W A + +GH+ VT SPD S S D AR+++ G+ + + A
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA- 236
Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQ 382
P+ + FS +R + + + I ++D++
Sbjct: 237 GAPINQICFSPNRYWMCAAT-EKGIRIFDLE 266
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 12/237 (5%)
Query: 348 LKAHTGPVISL---QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
L H G V SL Q +++ S D +++ W N S+ + P
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWG-------PNPDRHSSECSYGLPDR 61
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
L GHS +S+ + + + S+S D + +LW+++ C Y H +VL +AF
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
++ + D +W V G + H++ VS V + + + D K+
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR-FSPSLDAPVIVSGGWDNLVKV 180
Query: 525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA 581
W + L+ GH+N V+ V+ P G L S +D RLW GE + + A
Sbjct: 181 WDLATG-RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 15/197 (7%)
Query: 425 IASSSLDGTAKLW----DVRTMCCFYTLKN-----HEDEVLDIAFDYSGSKLATASSDQT 475
+ S+S D T W D + C Y L + H V D+A +G+ +AS D +
Sbjct: 31 VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 476 ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535
LW + + F GH+ +V L +AF ++ + D ++W V G
Sbjct: 91 LRLWNLQNG-QCQYKFLGHTKDV---LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 536 TFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
+ H++ VS V F P+ +++SG D ++W +G + LK H + V S +
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 594 NGDTIITASKDNTCCIW 610
+G ++ KD +W
Sbjct: 207 DGSLCASSDKDGVARLW 223
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG---- 539
AV GH V+ + + +K+ + S D+T W + YG
Sbjct: 2 AVAYEGQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDR 61
Query: 540 ----HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNG 595
HS VS V+ G +S S D + RLW+ ++G+C H DV S F+ +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 596 DTIITASKDNTCCIW 610
I++ +DN +W
Sbjct: 122 RQIVSGGRDNALRVW 136
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLK-AHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
+ ++D++ +++ +SG + L+ G IS + + + N L G+ + + +WD+Q Q
Sbjct: 131 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 190
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
RN +T HS + + +N + +++S S G DVR
Sbjct: 191 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 232
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
TL H EV + + G LA+ +D N+W GG V L QTF H V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 291
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
V + + +SD+ ++W V GA L HS +V + + P K ++S
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 348
Query: 559 GSQDTTCRL--WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
G +L W + + LK H V S + +G T+ +A+ D T +WR D
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 408
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 70/301 (23%)
Query: 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYD 249
++++ + K G G+ +LWD++ + H V +++++ Y +GS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 219
Query: 250 RTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---- 304
D++ + H + T GH V + ++ P G + +G D + +W SA E
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 305 CIQTYRGHSAEV---TFSPDQSTFCSC---SMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
+QT+ H V + P QS + + D RI+N SG + + AH+
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------ 332
Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
Q S ++W Y+ +++GH
Sbjct: 333 QVCS--------------ILWSPHYK-------------------ELISGH--------- 350
Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
F+ + + +W TM LK H VL + G+ +A+A++D+T L
Sbjct: 351 GFAQNQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 401
Query: 479 W 479
W
Sbjct: 402 W 402
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
L ++S+ + + +LD + LW + + ++ + + +A+ G+ LA +S
Sbjct: 121 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 180
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
LW V + L+ HS V + ++ L++ S V A +
Sbjct: 181 EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 234
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFS-- 588
T GHS EV + + P G+ + SG D +W + GE +Q H+ V +
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 589 -CGFNYNGDTIITASKDNTCCIW 610
C + N + D IW
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIW 317
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLK-AHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
+ ++D++ +++ +SG + L+ G IS + + + N L G+ + + +WD+Q Q
Sbjct: 120 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
RN +T HS + + +N + +++S S G DVR
Sbjct: 180 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 221
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
TL H EV + + G LA+ +D N+W GG V L QTF H V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 280
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
V + + +SD+ ++W V GA L HS +V + + P K ++S
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 337
Query: 559 GS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
G +W + + LK H V S + +G T+ +A+ D T +WR D
Sbjct: 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 70/301 (23%)
Query: 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYD 249
++++ + K G G+ +LWD++ + H V +++++ Y +GS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 208
Query: 250 RTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---- 304
D++ + H + T GH V + ++ P G + +G D + +W SA E
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 305 CIQTYRGHSAEV---TFSPDQSTFCSC---SMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
+QT+ H V + P QS + + D RI+N SG + + AH+
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------ 321
Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
Q S ++W Y+ +++GH
Sbjct: 322 QVCS--------------ILWSPHYK-------------------ELISGH--------- 339
Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
F+ + + +W TM LK H VL + G+ +A+A++D+T L
Sbjct: 340 GFAQNQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 390
Query: 479 W 479
W
Sbjct: 391 W 391
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
L ++S+ + + +LD + LW + + ++ + + +A+ G+ LA +S
Sbjct: 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
LW V + L+ HS V + ++ L++ S V A +
Sbjct: 170 EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 223
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFS-- 588
T GHS EV + + P G+ + SG D +W + GE +Q H+ V +
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 589 -CGFNYNGDTIITASKDNTCCIW 610
C + N + D IW
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIW 306
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLKA-HTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
+ ++D++ +++ +SG + L+ G IS + + + N L G+ + + +WD+Q Q
Sbjct: 40 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
RN +T HS + + +N + +++S S G DVR
Sbjct: 100 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 141
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
TL H EV + + G LA+ +D N+W GG V L QTF H V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 200
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
V + + +SD+ ++W V GA L HS +V + + P K ++S
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 257
Query: 559 GS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
G +W + + LK H V S + +G T+ +A+ D T +WR D
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 115/301 (38%), Gaps = 70/301 (23%)
Query: 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYD 249
++++ + K G G+ +LWD++ + H V +++++ Y +GS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 128
Query: 250 RTCKLWDIK-SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---- 304
D++ + H + T GH V + ++ P G + +G D + +W SA E
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 305 CIQTYRGHSAEV---TFSPDQSTFCSC---SMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
+QT+ H V + P QS + + D RI+N SG + + AH+
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS------ 241
Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
Q S ++W Y+ +++GH
Sbjct: 242 QVCS--------------ILWSPHYK-------------------ELISGH--------- 259
Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
F+ + + +W TM LK H VL + G+ +A+A++D+T L
Sbjct: 260 GFAQNQLV---------IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRL 310
Query: 479 W 479
W
Sbjct: 311 W 311
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKLATASSDQ 474
L ++S+ + + +LD + LW + L+ + + + +A+ G+ LA +S
Sbjct: 30 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
LW V + L+ HS V + ++ L++ S V A +
Sbjct: 90 EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 143
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFSCG 590
T GHS EV + + P G+ + SG D +W + GE +Q H+ V +
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 591 F 591
+
Sbjct: 204 W 204
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
+ +LK + + S FS + +L TGS D I + ++Y T I
Sbjct: 7 IKSLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDFT--------------LID 50
Query: 405 IL--TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV-----RT--MCCFYTLKNHEDEV 455
+L T H + I + + S++A+ S D T +W RT M ++ HE+EV
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 456 LDIAFDYSGSKLATASSDQTANLWTV---GGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
+A+ G LAT S D++ +W G E + HS +V V+ + S +
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI---WHPSEAL 167
Query: 513 LATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPTGKL--VLSGSQDTTCRLW- 568
LA++S D T ++W E + GH V F T + + SGS D+T R+W
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 569 -------STESGECIQVL-KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
+ C +L H+ V++ + +NG I + D ++ ++
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 121/273 (44%), Gaps = 47/273 (17%)
Query: 222 ICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAV 276
I + + ++ +++ FS+ G L TGS DR KL +K ++ H+ + +V
Sbjct: 7 IKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 277 AFSEPYGDKILTGSFDKTLKLWASAKE-------ECIQTYRGHSAE---VTFSPDQSTFC 326
A+ P+ + GSFD T+ +WA + + + GH E V +S D
Sbjct: 65 AW-RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 327 SCSMDHTARIFNTN-SGQE---MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ 382
+CS D + I+ T+ SG+E + L+ H+ V + + +L + S+D ++ +W
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW--- 180
Query: 383 YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM--IASSSLDGTAKLW--- 437
Y + + +L GH + + F+ + + + S S D T ++W
Sbjct: 181 -----------KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229
Query: 438 -----DVRTMCCFYTLKN-HEDEVLDIAFDYSG 464
D + C L + H+ +V ++A+ ++G
Sbjct: 230 GDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 459 AFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
+FD+S LAT S+D+ L +V L + + +A+ S LA S
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 519 DQTAKLWTVGGA------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST-E 571
D T +W + ++LL GH NEV V++ G + + S+D + +W T E
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 572 SGE---CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
SGE CI VL+ H DV ++ + + ++S D+T IW+ + D
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 174 AQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLW-DIKSGHE-ICTYRGHQNV 231
+ YE +L+ H + ++ + + SYD T ++W D E + GH+
Sbjct: 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT 199
Query: 232 VYAVAFSEPYGCL---TGSYDRTCKLW 255
V++ F + G +GS D T ++W
Sbjct: 200 VWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 41/273 (15%)
Query: 360 FSSDRNMLITGSFDSSIVVWDIQ-YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
+ D M + SFD ++ VWD Q + E+ Y P+ +CL
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPV--------STKHCL- 158
Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA----FDYSGSKLATASSDQ 474
+A + +L D+++ C + L+ H E+L ++ +DY LATAS+D
Sbjct: 159 ------VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY---ILATASADS 209
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIA------------FDYSGSKLATASSDQTA 522
LW V A L T H+ + S+ ++ A F G L T +D
Sbjct: 210 RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRM 269
Query: 523 KLWTVGGAVELLQTFYGHSNEVSK-----VSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
+LW L + N K VS + + V +T +++ SGE I
Sbjct: 270 RLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQIT 328
Query: 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
+LK H V C F N + + S+D W
Sbjct: 329 MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 108/296 (36%), Gaps = 57/296 (19%)
Query: 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAY 391
T R+ ++ + H G + +L + +++G D IV++D++ +R +Y
Sbjct: 24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS--SRQSY 81
Query: 392 ----AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT 447
A + H +H + + + + M SSS D T K+WD T+
Sbjct: 82 YTCKAVCSIGRDHPDVHRYSVETVQ----WYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL--------QTFYGHSNEVS 499
N E+ V YS ++ + T G V+L GH E+
Sbjct: 138 F-NFEETV------YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190
Query: 500 KV-LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
V +DY LATAS+D KLW V A L T H+ + S+
Sbjct: 191 AVSWSPRYDY---ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ------------ 235
Query: 559 GSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
+ ES AH V F +G ++T DN +W S N
Sbjct: 236 ----------AVESAN-----TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 30/182 (16%)
Query: 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE--PYGCLT--GSYDRTCKLWDIKS 259
+ S+D+T K+WD + + + VY+ S CL G+ +L D+KS
Sbjct: 117 SSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAEVTF 318
G +GH+ + AV++S Y + T S D +KLW + C+ T H+ + +
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235
Query: 319 SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV 378
+ + + NT AH G V L F+SD L+T D+ + +
Sbjct: 236 AVESA--------------NT----------AHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
Query: 379 WD 380
W+
Sbjct: 272 WN 273
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I+ N N+ + HT+ AHT V L F+ +L TGS
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 302 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 380
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
+P L GH +E +N + N + S+S D T LWD+ R + H
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
V D+A+ L + + DQ +W + T H+ EV+ ++F+ Y
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 292
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
S LAT S+D+T LW + L +F H +E+ +V + P + +L+ S D +
Sbjct: 293 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 352
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
W STE E + + H + +N N II + S+DN +W+
Sbjct: 353 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 203 LTGSYDRTCKLWDIKS---GHEIC----TYRGHQNVVYAVAFSEPYGCLTGSY--DRTCK 253
L+ S D T LWDI + H + + GH VV VA+ + L GS D+
Sbjct: 202 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 254 LWDIKSGH---EICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA----SAKEEC 305
+WD ++ + T H V ++F+ PY + IL TGS DKT+ LW K
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHS 320
Query: 306 IQTYRGHSAEVTFSP-DQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGP 354
++++ +V +SP +++ S D +++ + G+E T A GP
Sbjct: 321 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 183 LKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEP 240
+ +H + ++F+ + L TGS D+T LWD+++ ++ ++ H++ ++ V +S
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 241 YGCLTGSY--DRTCKLWDI-KSGHEICT 265
+ S DR +WD+ K G E T
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQST 364
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I+ N N+ + HT+ AHT V L F+ +L TGS
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 300 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 345 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
+P L GH +E +N + N + S+S D T LWD+ R + H
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
V D+A+ L + + DQ +W + T H+ EV+ ++F+ Y
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 290
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
S LAT S+D+T LW + L +F H +E+ +V + P + +L+ S D +
Sbjct: 291 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 350
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
W STE E + + H + +N N II + S+DN +W+
Sbjct: 351 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 203 LTGSYDRTCKLWDIKS---GHEIC----TYRGHQNVVYAVAFSEPYGCLTGSY--DRTCK 253
L+ S D T LWDI + H + + GH VV VA+ + L GS D+
Sbjct: 200 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 254 LWDIKSGH---EICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLW----ASAKEEC 305
+WD ++ + T H V ++F+ PY + IL TGS DKT+ LW K
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHS 318
Query: 306 IQTYRGHSAEVTFSP-DQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGP 354
++++ +V +SP +++ S D +++ + G+E T A GP
Sbjct: 319 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 183 LKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEP 240
+ +H + ++F+ + L TGS D+T LWD+++ ++ ++ H++ ++ V +S
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 241 YGCLTGSY--DRTCKLWDI-KSGHEICT 265
+ S DR +WD+ K G E T
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQST 362
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A+ KE + + GH+A V
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I+ N N+ + HT+ AHT V L F+ +L TGS
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 298 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
+P L GH +E +N + N + S+S D T LWD+ R + H
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
V D+A+ L + + DQ +W + T H+ EV+ ++F+ Y
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 288
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
S LAT S+D+T LW + L +F H +E+ +V + P + +L+ S D +
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
W STE E + + H + +N N II + S+DN +W+
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 20/171 (11%)
Query: 203 LTGSYDRTCKLWDIKS---GHEIC----TYRGHQNVVYAVAFSEPYGCLTGSY--DRTCK 253
L+ S D T LWDI + H + + GH VV VA+ + L GS D+
Sbjct: 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 254 LWDIKSGH---EICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLW----ASAKEEC 305
+WD ++ + T H V ++F+ PY + IL TGS DKT+ LW K
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHS 316
Query: 306 IQTYRGHSAEVTFSP-DQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGP 354
++++ +V +SP +++ S D +++ + G+E T A GP
Sbjct: 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 183 LKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEP 240
+ +H + ++F+ + L TGS D+T LWD+++ ++ ++ H++ ++ V +S
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 241 YGCLTGSY--DRTCKLWDI-KSGHEICT 265
+ S DR +WD+ K G E T
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQST 360
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A KE I + GHSA V
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 320 P----DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I++T S + H + AHT V L F+ +L TGS
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 296 ADKTVALWDL------RNLKLK---------LHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 203 LTGSYDRTCKLWDIKSGHE-------ICTYRGHQNVVYAVAFSEPYGCLTGSY--DRTCK 253
L+ S D T LWDI +G + + GH VV VA+ + L GS D+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLX 255
Query: 254 LWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEEC-IQT 308
+WD +S H V ++F+ PY + IL TGS DKT+ LW + + T
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 309 YRGHSAE---VTFSP-DQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGP 354
+ H E V +SP +++ S D +++ + G+E A GP
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHEDEVLD 457
L GH +E +N + S + S+S D T LWD+ + + H V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 458 IAFDYSGSKL-ATASSDQTANLW-----TVGGAVELLQTFYGHSNEVSKVLDIAFD-YSG 510
+A+ L + + DQ +W T L+ H+ EV+ ++F+ YS
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVD---AHTAEVNC---LSFNPYSE 288
Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW- 568
LAT S+D+T LW + L TF H +E+ +V + P + +L+ S D +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 569 -----------STESG--ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
E G E + + H + +N N +I + S+DN IW+
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 182 MLKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSE 239
++ +H + ++F+ + L TGS D+T LWD+++ ++ T+ H++ ++ V +S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 240 PYGCLTGSY--DRTCKLWDI-KSGHE 262
+ S DR +WD+ K G E
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEE 355
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A KE I + GHSA V
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 320 P----DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I++T S + H + AHT V L F+ +L TGS
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 296 ADKTVALWDL------RNLKLK---------LHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 203 LTGSYDRTCKLWDIKSGHE-------ICTYRGHQNVVYAVAFSEPYGCLTGSY--DRTCK 253
L+ S D T LWDI +G + + GH VV VA+ + L GS D+
Sbjct: 196 LSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLM 255
Query: 254 LWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEEC-IQT 308
+WD +S H V ++F+ PY + IL TGS DKT+ LW + + T
Sbjct: 256 IWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 309 YRGHSAE---VTFSP-DQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGP 354
+ H E V +SP +++ S D +++ + G+E A GP
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGP 365
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHEDEVLD 457
L GH +E +N + S + S+S D T LWD+ + + H V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 458 IAFDYSGSKL-ATASSDQTANLW-----TVGGAVELLQTFYGHSNEVSKVLDIAFD-YSG 510
+A+ L + + DQ +W T L+ H+ EV+ ++F+ YS
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD---AHTAEVNC---LSFNPYSE 288
Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW- 568
LAT S+D+T LW + L TF H +E+ +V + P + +L+ S D +W
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 569 -----------STESG--ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
E G E + + H + +N N +I + S+DN IW+
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 182 MLKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSE 239
++ +H + ++F+ + L TGS D+T LWD+++ ++ T+ H++ ++ V +S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 240 PYGCLTGSY--DRTCKLWDI-KSGHE 262
+ S DR +WD+ K G E
Sbjct: 330 HNETILASSGTDRRLNVWDLSKIGEE 355
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKE----ECIQTYRGHSAEVTFS 319
RGHQ Y ++++ +L+ S D T+ LW A KE + + GH+A V
Sbjct: 174 RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 233
Query: 320 P----DQSTFCSCSMDHTARIFNT---NSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
+S F S + D I++T N+ + H++ AHT V L F+ +L TGS
Sbjct: 234 SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 293
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
D ++ +WD+ RN + +H H EI ++ N +++ASS
Sbjct: 294 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
D +WD+ + + ++ ED ++ F + G
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 31/234 (13%)
Query: 406 LTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHEDEVLD 457
L GH +E +N + + + S+S D T LWD+ + + H V D
Sbjct: 173 LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVED 232
Query: 458 IAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-YSGSKL 513
+++ L + + DQ +W + + H+ EV+ ++F+ YS L
Sbjct: 233 VSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC---LSFNPYSEFIL 289
Query: 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW---- 568
AT S+D+T LW + L +F H +E+ +V + P + +L+ S D +W
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Query: 569 --------STESG--ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
E G E + + H + +N N +I + S+DN +W+
Sbjct: 350 IGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 183 LKSHLLPLTNITFDKFGTRCL-TGSYDRTCKLWDIKS-GHEICTYRGHQNVVYAVAFSEP 240
+ +H + ++F+ + L TGS D+T LWD+++ ++ ++ H++ ++ V +S
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 241 YGCLTGSY--DRTCKLWDI-KSGHE 262
+ S DR +WD+ K G E
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEE 353
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEP-Y 241
SH + + D +GTR T S DR+ K++D+++G + I RGH+ V+ VA++ P Y
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 242 GCLTG--SYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFS-EPYGDKILTGSFDK 293
G + SYDR +W ++G HE + GH + V +V ++ YG + GS D
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 294 TLKL 297
+ L
Sbjct: 128 AISL 131
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 32/235 (13%)
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYS- 463
T H I + ++ + +A+ S D + K++DVR L+ HE V +A+ +
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 464 -GSKLATASSDQTANLW-TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT 521
G+ LA+ S D+ +W G E GH + V+ V DY G LA SSD
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-GLILACGSSDGA 128
Query: 522 AKL--WTVGGAVELLQTFYGHSNEVSKVSF-----------HPTG------KLVLSGSQD 562
L +T G E+ + H+ + VS+ HP+G K SG D
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 563 TTCRLW-STESGECI--QVLKAHEDDV----FSCGFNYNGDTIITASKDNTCCIW 610
+LW E G+ Q L+AH D V ++ TI + S+D IW
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 325 FCSCSMDHTARIFNTNSGQE--MHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVW 379
+CS D + +IF+ +G + + L+ H GPV + ++ N+L + S+D +++W
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 493 GHSNEVSKVLDIAF-DYSGSKLATASSDQTAKLWTV--GGAV----ELLQTFYGHSNEVS 545
GH+ + VLDIA+ ++ + +A+ S D T +W + GG V E + T GH+ V
Sbjct: 79 GHT---APVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 546 KVSFHPTGK-LVLSGSQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDTIITAS 602
V++HPT + ++LS D +W +G + L H D ++S ++ +G I T+
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 603 KDN 605
+D
Sbjct: 196 RDK 198
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 72/175 (41%), Gaps = 28/175 (16%)
Query: 323 STFCSCSMDHTARIFNTNSG---------------QEMHTLKAHTGPVISLQFSS-DRNM 366
S FC+ + A I + G + + + HT PV+ + + + N+
Sbjct: 37 SGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV 96
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMI 425
+ +GS D +++VW+I +P+ L GH++ + ++ + +++
Sbjct: 97 IASGSEDCTVMVWEIP---------DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVL 147
Query: 426 ASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLDIAFDYSGSKLATASSDQTANL 478
S+ D +WDV T TL H D + + + G+ + T+ D+ +
Sbjct: 148 LSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV 202
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 28/190 (14%)
Query: 268 GHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAK-------EECIQTYRGHSAE---V 316
GH V +A+ P+ D ++ +GS D T+ +W E + T GH+ V
Sbjct: 79 GHTAPVLDIAWX-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 317 TFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP--VISLQFSSDRNMLITGSFD 373
+ P Q+ S D+ +++ +G + TL P + S+ +S D ++ T D
Sbjct: 138 AWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIH-ILTGHSQEISNCLFNFSNSMIASSSLDG 432
+ V I+ + GT A + + + +P+H + + ++ S +A
Sbjct: 198 KRVRV--IEPRKGTVVAEKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVA------ 248
Query: 433 TAKLWDVRTM 442
LWD + +
Sbjct: 249 ---LWDTKHL 255
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 493 GHSNEVSKVLDIAF-DYSGSKLATASSDQTAKLWTV--GGAV----ELLQTFYGHSNEVS 545
GH+ + VLDIA+ ++ + +A+ S D T +W + GG V E + T GH+ V
Sbjct: 79 GHT---APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 546 KVSFHPTGK-LVLSGSQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDTIITAS 602
V++HPT + ++LS D +W +G + L H D ++S ++ +G I T+
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 603 KDN 605
+D
Sbjct: 196 RDK 198
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 350 AHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408
HT PV+ + + + N++ +GS D +++VW+I +P+ L G
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP---------DGGLVLPLREPVITLEG 129
Query: 409 HSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLDIAFDYSGS 465
H++ + ++ + +++ S+ D +WDV T TL H D + + + G+
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 466 KLATASSDQTANL 478
+ T+ D+ +
Sbjct: 190 LICTSCRDKRVRV 202
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 79/190 (41%), Gaps = 28/190 (14%)
Query: 268 GHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAK-------EECIQTYRGHSAE---V 316
GH V +A+ P+ D ++ +GS D T+ +W E + T GH+ V
Sbjct: 79 GHTAPVLDIAWC-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 317 TFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP--VISLQFSSDRNMLITGSFD 373
+ P Q+ S D+ +++ +G + TL P + S+ +S D ++ T D
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIH-ILTGHSQEISNCLFNFSNSMIASSSLDG 432
+ V I+ + GT A + + + +P+H + + ++ S +A
Sbjct: 198 KRVRV--IEPRKGTVVAEKDRPHEGT-RPVHAVFVSEGKILTTGFSRMSERQVA------ 248
Query: 433 TAKLWDVRTM 442
LWD + +
Sbjct: 249 ---LWDTKHL 255
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 44/286 (15%)
Query: 337 FNTNSGQEMHTLKAHTG--PVISLQFSSD--------RNMLITGSFDSSIVVWDIQYQFG 386
F+T+S E+ +L A P+ SLQ S N +I G+ D+ G
Sbjct: 41 FSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-----------G 89
Query: 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCF 445
+ Y+ + + + + HS + FN ++++AS +G +WD+ C
Sbjct: 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CT 147
Query: 446 YTLKNHE-----------DEVLDIAFDYSGSKL-ATASSDQTANLWTVGGAVELLQTFYG 493
+ N+ DEV+ +A++ S + + A+A S A++W + E++ Y
Sbjct: 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207
Query: 494 HSNE-VSKVLDIA--FDYSGSKLATAS---SDQTAKLWTVGGAVELLQTF-YGHSNEVSK 546
N + + L + + +++ATA+ +D + +W + A LQT GH +
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 547 VSF-HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
+ + H L+LS +D T LW+ ES E + A + F F
Sbjct: 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 197 KFGTRCLTGS---YDRTCKLWDIKSGHEICT--YRGHQNVVYAVAF--SEPYGCLTGSYD 249
K TR T + D + +WD+++ + +GHQ + ++ + + + L+ D
Sbjct: 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD 284
Query: 250 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
T LW+ +S ++ + N + F+ D SFD +++
Sbjct: 285 NTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
++ ++ + GH N ++++ FHP L+LS S+D RLW+ ++ + + ++ H D+V
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 159
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
S ++ G+ I++ D++ +WR
Sbjct: 160 LSADYDLLGEKIMSCGMDHSLKLWR 184
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 407 TGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDY 462
GH I+ F+ + +++ S S D +LW+++T + F ++ H DEVL +D
Sbjct: 107 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 166
Query: 463 SGSKLATASSDQTANLWTVG 482
G K+ + D + LW +
Sbjct: 167 LGEKIMSCGMDHSLKLWRIN 186
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVTFSPDQ 322
Y GH N + + F + +L+ S D L+LW + + + GH EV S D
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV-LSADY 164
Query: 323 ----STFCSCSMDHTARIFNTNSGQEMHTLK 349
SC MDH+ +++ NS + M+ +K
Sbjct: 165 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSN 542
++ ++ + GH N ++++ D + L + S D +LW + V + GH +
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
EV + G+ ++S D + +LW S + +K D
Sbjct: 158 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 199
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQ-----FGTR 388
RI N + Q + H + L+F D N+L++ S D ++ +W+IQ FG
Sbjct: 93 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG- 151
Query: 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ GH E+ + ++ I S +D + KLW + + +
Sbjct: 152 -----------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Query: 449 KNHEDEVLDIAFDYSGSK 466
K ++DY+ +K
Sbjct: 195 KE--------SYDYNPNK 204
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
++ ++ + GH N ++++ FHP L+LS S+D RLW+ ++ + + ++ H D+V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
S ++ G+ I++ D++ +WR
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWR 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 407 TGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDY 462
GH I+ F+ + +++ S S D +LW+++T + F ++ H DEVL +D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 170
Query: 463 SGSKLATASSDQTANLWTVG 482
G K+ + D + LW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRIN 190
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVTFSPDQ 322
Y GH N + + F + +L+ S D L+LW + + + GH EV S D
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV-LSADY 168
Query: 323 ----STFCSCSMDHTARIFNTNSGQEMHTLK 349
SC MDH+ +++ NS + M+ +K
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSN 542
++ ++ + GH N ++++ D + L + S D +LW + V + GH +
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
EV + G+ ++S D + +LW S + +K D
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQ-----FGTR 388
RI N + Q + H + L+F D N+L++ S D ++ +W+IQ FG
Sbjct: 97 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG- 155
Query: 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ GH E+ + ++ I S +D + KLW + + +
Sbjct: 156 -----------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 449 KNHEDEVLDIAFDYSGSK 466
K ++DY+ +K
Sbjct: 199 KE--------SYDYNPNK 208
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
++ ++ + GH N ++++ FHP L+LS S+D RLW+ ++ + + ++ H D+V
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
S ++ G+ I++ D++ +WR
Sbjct: 165 LSADYDLLGEKIMSCGMDHSLKLWR 189
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 407 TGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDY 462
GH I+ F+ + +++ S S D +LW+++T + F ++ H DEVL +D
Sbjct: 112 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171
Query: 463 SGSKLATASSDQTANLWTVG 482
G K+ + D + LW +
Sbjct: 172 LGEKIMSCGMDHSLKLWRIN 191
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVTFSPDQ 322
Y GH N + + F + +L+ S D L+LW + + + GH EV S D
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV-LSADY 169
Query: 323 ----STFCSCSMDHTARIFNTNSGQEMHTLK 349
SC MDH+ +++ NS + M+ +K
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSN 542
++ ++ + GH N ++++ D + L + S D +LW + V + GH +
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
EV + G+ ++S D + +LW S + +K D
Sbjct: 163 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQ-----FGTR 388
RI N + Q + H + L+F D N+L++ S D ++ +W+IQ FG
Sbjct: 98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG- 156
Query: 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ GH E+ + ++ I S +D + KLW + + +
Sbjct: 157 -----------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Query: 449 KNHEDEVLDIAFDYSGSK 466
K ++DY+ +K
Sbjct: 200 KE--------SYDYNPNK 209
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
++ ++ + GH N ++++ FHP L+LS S+D RLW+ ++ + + ++ H D+V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
S ++ G+ I++ D++ +WR
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWR 188
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 407 TGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDY 462
GH I+ F+ + +++ S S D +LW+++T + F ++ H DEVL +D
Sbjct: 111 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 170
Query: 463 SGSKLATASSDQTANLWTVG 482
G K+ + D + LW +
Sbjct: 171 LGEKIMSCGMDHSLKLWRIN 190
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVTFSPDQ 322
Y GH N + + F + +L+ S D L+LW + + + GH EV S D
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV-LSADY 168
Query: 323 ----STFCSCSMDHTARIFNTNSGQEMHTLK 349
SC MDH+ +++ NS + M+ +K
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSN 542
++ ++ + GH N ++++ D + L + S D +LW + V + GH +
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
EV + G+ ++S D + +LW S + +K D
Sbjct: 162 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 203
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQ-----FGTR 388
RI N + Q + H + L+F D N+L++ S D ++ +W+IQ FG
Sbjct: 97 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG- 155
Query: 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ GH E+ + ++ I S +D + KLW + + +
Sbjct: 156 -----------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 449 KNHEDEVLDIAFDYSGSK 466
K ++DY+ +K
Sbjct: 199 KE--------SYDYNPNK 208
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
++ ++ + GH N ++++ FHP L+LS S+D RLW+ ++ + + ++ H D+V
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 200
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
S ++ G+ I++ D++ +WR
Sbjct: 201 LSADYDLLGEKIMSCGMDHSLKLWR 225
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 407 TGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDY 462
GH I+ F+ + +++ S S D +LW+++T + F ++ H DEVL +D
Sbjct: 148 VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 207
Query: 463 SGSKLATASSDQTANLWTVG 482
G K+ + D + LW +
Sbjct: 208 LGEKIMSCGMDHSLKLWRIN 227
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHSAEVTFSPDQ 322
Y GH N + + F + +L+ S D L+LW + + + GH EV S D
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV-LSADY 205
Query: 323 ----STFCSCSMDHTARIFNTNSGQEMHTLK 349
SC MDH+ +++ NS + M+ +K
Sbjct: 206 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV--GGAVELLQTFYGHSN 542
++ ++ + GH N ++++ D + L + S D +LW + V + GH +
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 198
Query: 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
EV + G+ ++S D + +LW S + +K D
Sbjct: 199 EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 240
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 32/138 (23%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQ-----FGTR 388
RI N + Q + H + L+F D N+L++ S D ++ +W+IQ FG
Sbjct: 134 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG- 192
Query: 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
+ GH E+ + ++ I S +D + KLW + + +
Sbjct: 193 -----------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Query: 449 KNHEDEVLDIAFDYSGSK 466
K ++DY+ +K
Sbjct: 236 KE--------SYDYNPNK 245
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 100/460 (21%), Positives = 183/460 (39%), Gaps = 62/460 (13%)
Query: 201 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSY--DRTCKLWDIK 258
R ++GS D T +++ T+ H V++V ++ P G L S D T L++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV 220
Query: 259 SGHEICTYR-------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-- 309
G + + H V+ + +S P G KI + S DKT+K+W A + +T
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 310 --RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML 367
R ++ + S S + N G H + +L S+D L
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339
Query: 368 ITGSFDSSIVVWDIQYQFGTR---NAYA------ESTYRA--------SHKPIHILTGHS 410
+ + I WDI R + +A ++T + H + G
Sbjct: 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399
Query: 411 QEISNCLFN--FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGS-- 465
+ S + N S + + S DG D+ C+ + + ++ ++ Y+ S
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSADG-----DIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454
Query: 466 -------KLATASSDQTANLWTVGGA-VELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS 517
+A D +++ + GA V ++T H E++ V AF +G+ L +
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSV---AFSNNGAFL--VA 508
Query: 518 SDQTAKL--WTVGGAVELLQT--FYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-- 571
+DQ+ K+ ++V EL T + H+ +V+ VS+ P + +GS D + +W+
Sbjct: 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568
Query: 572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
S I + AH + N TI++A +D+ W
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/341 (19%), Positives = 132/341 (38%), Gaps = 54/341 (15%)
Query: 262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-----EECIQTYRGHSAEV 316
EI T HQ V A + P G +G +++W + + + I + G ++
Sbjct: 53 EIYTEHSHQTTV---AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 109
Query: 317 TFSPDQSTFCSCS--MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM-LITGSFD 373
++ + + + +F ++G L + S+ F R +I+GS D
Sbjct: 110 SWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDD 169
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT 433
+++ +++ F ++ + E H++ + + +N S+ AS+ DGT
Sbjct: 170 NTVAIFE-GPPFKFKSTFGE---------------HTKFVHSVRYNPDGSLFASTGGDGT 213
Query: 434 AKLW---DVRTMCCFY--TLKN--HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE 486
L+ D F +LKN H V + + G+K+A+AS+D+T +W V
Sbjct: 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA---- 269
Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL--------QTFY 538
+ +V K + + +L + Q + G + + Q Y
Sbjct: 270 --------TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY 321
Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
GH+ ++ +S GK + S + W +G +V
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 19/220 (8%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEVLDIAFDY 462
I T HS + + + S AS + G ++WD T T+ V DI++D
Sbjct: 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 113
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI-AFDYSGSK---LATASS 518
++A + G V L T + N + + + D+ S+ + + S
Sbjct: 114 ESKRIAAVGEGRERF-----GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168
Query: 519 DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQV 578
D T ++ G + TF H+ V V ++P G L S D T L++ G V
Sbjct: 169 DNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 579 LK-------AHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
+ AH VF ++ +G I +AS D T IW
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410
HT V + +S D L TGS D+S++VW++ + S PI I H+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN--------------KPSDHPIIIKGAHA 580
Query: 411 QEISNCLFNFSNSMIASSSLDGTAKLWDV 439
N + + + I S+ D K W+V
Sbjct: 581 MSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 32/270 (11%)
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
V S+++S D + L G + + ++D++ Q R + GH +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR----------------TMAGHQARVG 180
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMC-CFYTLKNHEDEVLDIAFDYSGSKLATASSD 473
CL +++ +++S S G DVR TL+ H EV +A+ G +LA+ +D
Sbjct: 181 -CL-SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238
Query: 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF-DYSGSKLATASS--DQTAKLWTVGGA 530
+W ++ + +N + V +A+ + + LAT D+ W
Sbjct: 239 NVVQIWDARSSIPK----FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLS--GSQDTTCRLWS-TESGECIQV-LKAHEDDV 586
+ G ++V+ + + P K ++S G D +WS + SG QV + AH+ V
Sbjct: 295 ARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV 352
Query: 587 FSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
+ +G + TA+ D WR + D
Sbjct: 353 LYSALSPDGRILSTAASDENLKFWRVYDGD 382
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/178 (19%), Positives = 65/178 (36%), Gaps = 13/178 (7%)
Query: 179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF- 237
+ L+ H + + + G + +G D ++WD +S T H V AVA+
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268
Query: 238 ---SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT--GSFD 292
S G+ D+ W+ +G + T V + P+ +I++ G D
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW--SPHSKEIMSTHGFPD 326
Query: 293 KTLKLWASA-----KEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345
L +W+ + K+ I + SPD + + D + + G +
Sbjct: 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 47/275 (17%)
Query: 173 FAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV 232
F + K L H PLT + ++K G + S D + +W +G + T GH +
Sbjct: 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
Query: 233 YAV---AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 289
+++ F++ C+TGS D + KLWD+ +G + T++ V V FS P G+ L
Sbjct: 78 WSIDVDCFTKY--CVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFS-PCGNYFL-A 132
Query: 290 SFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
D +K +P D S + +H +
Sbjct: 133 ILDNVMK----------------------NPGSINIYEIERDSATHELTKVSEEPIHKII 170
Query: 350 AHTG--PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407
H G +S+ +I G D I +D+ + Y +S +
Sbjct: 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDS-----------ID 215
Query: 408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM 442
H + IS+ F+ + +SS D + L DV T+
Sbjct: 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 133/326 (40%), Gaps = 40/326 (12%)
Query: 268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTF-- 325
GH+ + V +++ GD + + S D + +W S E + T GH+ + +S D F
Sbjct: 30 GHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI-WSIDVDCFTK 87
Query: 326 --CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLIT-----GSFDSSIVV 378
+ S D++ ++++ ++GQ + T K+ PV ++FS N + SI +
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NSMIASSSLDGTAKL 436
++I+ R++ + S +PIH + H + + +S I + DG
Sbjct: 147 YEIE-----RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 437 WDVRTMCCFY-TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHS 495
+DV + ++ HE + D+ F + T+S D + L V +++L+ +
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS-TLQVLKKY---- 256
Query: 496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE--LLQTFY------------GHS 541
E L+ A + Q AK T A E FY GH
Sbjct: 257 -ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 542 NEVSKVSFHPTGKLVLSGSQDTTCRL 567
++ V+ P G SG +D RL
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 48/271 (17%)
Query: 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
+V ++ + SCS D +A ++ + +G+ + TL HTG + S+ +TGS D
Sbjct: 37 QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96
Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
SI +WD+ N +T+++ P+ + E S C F + G+
Sbjct: 97 SIKLWDVS------NGQCVATWKS---PVPV---KRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494
++++ + L +E + + G AT + W+ G + GH
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG------WSTKGKYIIA----GH 194
Query: 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK 554
+ D++ +Y E + + H +S + F P
Sbjct: 195 KDGKISKYDVSNNY-----------------------EYVDSIDLHEKSISDMQFSPDLT 231
Query: 555 LVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
++ S+DT L + +QVLK +E D
Sbjct: 232 YFITSSRDTNSFLVDVST---LQVLKKYETD 259
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 477 NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW-TVGGAVELLQ 535
NL+ G ++ ++ GH +++V ++ G L + S D +A +W ++ G E L
Sbjct: 15 NLYFQGSHMKAIK-LTGHERPLTQV---KYNKEGDLLFSCSKDSSASVWYSLNG--ERLG 68
Query: 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA 581
T GH+ + + K ++GS D + +LW +G+C+ K+
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS 114
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI 598
GH +++V ++ G L+ S S+D++ +W + +GE + L H ++S +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 599 ITASKDNTCCIWRSMN 614
+T S D + +W N
Sbjct: 90 VTGSADYSIKLWDVSN 105
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Query: 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLW-TVGGAVELLQTFYGHSNEVSKVLDIAF 506
L HE + + ++ G L + S D +A++W ++ G E L T GH+ + I
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHT---GTIWSIDV 82
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS-------- 558
D T S+D + KLW V + + T + V +V F P G L+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNG-QCVAT-WKSPVPVKRVEFSPCGNYFLAILDNVMKN 140
Query: 559 -GS-------QDTTCRLWSTESGECIQVLKAHE--DDVFSCGFNYNGDTIITASKD 604
GS +D+ + S E I + HE D G++ G II KD
Sbjct: 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 579 LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
L HE + +N GD + + SKD++ +W S+N
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN 63
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 524 LWTVGGAVELLQTFY--------GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
L T G +++L + + H +E++K+ F P+G+ ++S SQD ++WS + G
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
+ L H V G +++AS D T +W
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 478 LWTVGGAVELLQTFYGHSNE-----VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE 532
L T G +++L + + E VS++ + F SG L ++S D K+W+V
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
+T GH V+ ++ G+ VLS S D T RLW +G I E+
Sbjct: 171 P-RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVA-FSEPYG 242
++H+ +T + F G ++ S D K+W +K G T GH+ V +A
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
L+ S D T +LW+ +G I T+ +N
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
I H EI+ F S + SSS D K+W V+ TL H V DIA G
Sbjct: 131 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF 506
+ +AS D T LW G + TF N V IA
Sbjct: 191 RNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIAL 231
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 237 FSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 296
F ++ S D K+W +K G T GH+ V +A + G +L+ S D T++
Sbjct: 145 FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIR 203
Query: 297 LWASAKEECIQTY 309
LW I T+
Sbjct: 204 LWECGTGTTIHTF 216
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIF 337
P G+ +++ S D LK+W+ +T GH A VT S S+D T R++
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 338 NTNSGQEMHTLKAHTGP-----VISLQFSSDRNM 366
+G +HT P I+L +DR +
Sbjct: 206 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 239
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394
++ ++N + +AH + L+F LI+ S D + +W ++ R
Sbjct: 119 KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR------ 172
Query: 395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
L GH +++ + S+SLDGT +LW+ T +T E+
Sbjct: 173 ----------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 524 LWTVGGAVELLQTFY--------GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
L T G +++L + + H +E++K+ F P+G+ ++S SQD ++WS + G
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
+ L H V G +++AS D T +W
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 478 LWTVGGAVELLQTFYGHSNE-----VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE 532
L T G +++L + + E VS++ + F SG L ++S D K+W+V
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED 584
+T GH V+ ++ G+ VLS S D T RLW +G I E+
Sbjct: 174 P-RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVA-FSEPYG 242
++H+ +T + F G ++ S D K+W +K G T GH+ V +A
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
L+ S D T +LW+ +G I T+ +N
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
I H EI+ F S + SSS D K+W V+ TL H V DIA G
Sbjct: 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF 506
+ +AS D T LW G + TF N V IA
Sbjct: 194 RNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIAL 234
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 237 FSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 296
F ++ S D K+W +K G T GH+ V +A + G +L+ S D T++
Sbjct: 148 FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIR 206
Query: 297 LWASAKEECIQTY 309
LW I T+
Sbjct: 207 LWECGTGTTIHTF 219
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIF 337
P G+ +++ S D LK+W+ +T GH A VT S S+D T R++
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 338 NTNSGQEMHTLKAHTGP-----VISLQFSSDRNM 366
+G +HT P I+L +DR +
Sbjct: 209 ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQL 242
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394
++ ++N + +AH + L+F LI+ S D + +W ++ R
Sbjct: 122 KVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR------ 175
Query: 395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
L GH +++ + S+SLDGT +LW+ T +T E+
Sbjct: 176 ----------TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
+ GS I++W+ FG ++ KP I G I+ FN N+
Sbjct: 135 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
+SS++GT +L D + + + + D S S + D N+ +
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
+ L H +V+ V L+ D+ LATAS DQT K+W V G L + H
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 295
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
+ V+ F P G +L+ Q + R++S +C L H F
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342
Score = 35.8 bits (81), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 219 GHEICTYRGHQNVVYAVAFSE--PYGCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVV 273
G E+ R H+ V VA + + T S D+T K+WD++ ++ H++ V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEEC 305
A FS P G ++LT ++++++++ +C
Sbjct: 300 NAACFS-PDGARLLTTDQKSEIRVYSASQWDC 330
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
+ GS I++W+ FG ++ KP I G I+ FN N+
Sbjct: 135 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
+SS++GT +L D + + + + D S S + D N+ +
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
+ L H +V+ V L+ D+ LATAS DQT K+W V G L + H
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 295
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
+ V+ F P G +L+ Q + R++S +C L H F
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 219 GHEICTYRGHQNVVYAVAFSE--PYGCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVV 273
G E+ R H+ V VA + + T S D+T K+WD++ ++ H++ V
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEEC 305
A FS P G ++LT ++++++++ +C
Sbjct: 300 NAACFS-PDGARLLTTDQKSEIRVYSASQWDC 330
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
+ GS I++W+ FG ++ KP I G I+ FN N+
Sbjct: 136 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 180
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
+SS++GT +L D + + + + D S S + D N+ +
Sbjct: 181 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 240
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
+ L H +V+ V L+ D+ LATAS DQT K+W V G L + H
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 296
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
+ V+ F P G +L+ Q + R++S +C L H F
Sbjct: 297 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 343
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 219 GHEICTYRGHQNVVYAVAFSE--PYGCLTGSYDRTCKLWDIKSGHEICTY---RGHQNVV 273
G E+ R H+ V VA + + T S D+T K+WD++ ++ H++ V
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEEC 305
A FS P G ++LT ++++++++ +C
Sbjct: 301 NAACFS-PDGARLLTTDQKSEIRVYSASQWDC 331
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
H + + D DY G +LAT SSD+T ++ V G +L+ T GH V +V D A
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCR 566
G+ LA+ S D +W G + HS V+ V + P G L+L S D
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 567 LWS-TESGECIQ-VLKAHEDDVFSCGF---------NYNG----DTIITASKDNTCCIWR 611
+ E+G ++ AH V S + +NG +T DN IW+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 106/267 (39%), Gaps = 28/267 (10%)
Query: 282 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV-----TFSPDQSTFCSCSMDHTA 334
YG ++ T S DKT+K++ E + I T GH V + SCS D
Sbjct: 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 335 RIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTR-- 388
I+ +G+ ++ H+ V S+Q++ +L+ S D + V + + T
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 389 --NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW----DVRTM 442
+A+A AS P I +E + + D K+W D +T
Sbjct: 140 IIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 443 CCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499
TL+ H D V D+A+ + S LA+ S D+T +WT + +
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 500 KVL-DIAFDYSGSKLATASSDQTAKLW 525
VL ++ SG+ LA + D LW
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 92/238 (38%), Gaps = 29/238 (12%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEV--LDIAF 460
I H++ I + + ++ +A+ S D T K+++V T TL HE V +D A
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ LA+ S D +W G + HS V+ V +Y G L ASSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSD 122
Query: 520 QTAKL--WTVGGAVELLQTFYGHSNEVSKVSFHPT-------------GKLVLSGSQDTT 564
+ + G + H+ V+ S+ P + ++G D
Sbjct: 123 GKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 565 CRLWSTESGECIQVLKA----HEDDVFSCGFNYN---GDTIITASKDNTCCIWRSMNR 615
++W S VL++ H D V ++ + + S+D TC IW N
Sbjct: 182 VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 44/252 (17%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITF--DKFGTRCLTGSYDRTCKLWDIKSGH--EIC 223
K+ E + ++ L H P+ + + KFGT + SYD +W ++G +I
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93
Query: 224 TYRGHQNVVYAVAFS-EPYG--CLTGSYDRTCKLWDIKS----------GHEICTYRGHQ 270
+ H V +V ++ YG L S D + + K H I G
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI----GVN 149
Query: 271 NVVYAVAFSEPYGD--------KILTGSFDKTLKLW---ASAKEECIQ-TYRGHS---AE 315
+ +A A E G+ K +TG D +K+W + A+ ++ T GHS +
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 316 VTFSPD---QSTFCSCSMDHTARIFNTNSGQ---EMHTLKAHTGPVI--SLQFSSDRNML 367
V +SP +S S S D T I+ ++ Q + LK P + +S N+L
Sbjct: 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269
Query: 368 ITGSFDSSIVVW 379
D+ + +W
Sbjct: 270 ALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 29/289 (10%)
Query: 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV- 316
G + H +++ A + YG ++ T S DKT+K++ E + I T GH V
Sbjct: 1 GSMVVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW 59
Query: 317 ---TFSPDQST-FCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLI 368
P T SCS D I+ +G+ ++ H+ V S+Q++ +L+
Sbjct: 60 RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 119
Query: 369 TGSFDSSIVVWDIQYQFGTR----NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
S D + V + + T +A+A AS P I +E +
Sbjct: 120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRK 174
Query: 425 IASSSLDGTAKLW----DVRTMCCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTAN 477
+ D K+W D +T TL+ H D V D+A+ + S LA+ S D+T
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 478 LWTVGGAVELLQTFYGHSNEVSKVL-DIAFDYSGSKLATASSDQTAKLW 525
+WT + + VL ++ SG+ LA + D LW
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
H + + D DY G +LAT SSD+T ++ V G +L+ T GH V +V D A
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 68
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
G+ LA+ S D +W G + HS V+ V + P G L+L S D
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 39/243 (16%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEV--LDIAF 460
I H++ I + + ++ +A+ S D T K+++V T TL HE V +D A
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ LA+ S D +W G + HS V+ V +Y G L ASSD
Sbjct: 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSD 124
Query: 520 QTAKLWTVGGAVELLQT-------FYGHSNEVSKVSFHPT-------------GKLVLSG 559
+ VE + H+ V+ S+ P + ++G
Sbjct: 125 GKVSV------VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 178
Query: 560 SQDTTCRLWSTESGECIQVLKA----HEDDVFSCGFNYN---GDTIITASKDNTCCIWRS 612
D ++W S VL++ H D V ++ + + S+D TC IW
Sbjct: 179 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238
Query: 613 MNR 615
N
Sbjct: 239 DNE 241
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 44/252 (17%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITF--DKFGTRCLTGSYDRTCKLWDIKSGH--EIC 223
K+ E + ++ L H P+ + + KFGT + SYD +W ++G +I
Sbjct: 36 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 95
Query: 224 TYRGHQNVVYAVAFS-EPYG--CLTGSYDRTCKLWDIKS----------GHEICTYRGHQ 270
+ H V +V ++ YG L S D + + K H I G
Sbjct: 96 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI----GVN 151
Query: 271 NVVYAVAFSEPYGD--------KILTGSFDKTLKLW---ASAKEECIQ-TYRGHS---AE 315
+ +A A E G+ K +TG D +K+W + A+ ++ T GHS +
Sbjct: 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 211
Query: 316 VTFSPD---QSTFCSCSMDHTARIFNTNSGQ---EMHTLKAHTGPVI--SLQFSSDRNML 367
V +SP +S S S D T I+ ++ Q + LK P + +S N+L
Sbjct: 212 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 271
Query: 368 ITGSFDSSIVVW 379
D+ + +W
Sbjct: 272 ALSGGDNKVTLW 283
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 105/314 (33%), Gaps = 42/314 (13%)
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDI-----KSGHEICTYRGHQNVVYAVAFSEPY 282
H VV AV S P + K+WDI KS N + + P
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-LPD 108
Query: 283 GDKILTGSFDKTLKLW-ASAKEECIQTYRGHSAEVTF----SPDQSTFCSCSMDHTARIF 337
G ++ G TL +W +A I+ SA + SPD SC D ++
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI----QYQFGTRNAYAE 393
+ ++ + + HT + S+D L TG D+++ WD+ Q Q ++ +
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ---QHDFTS 225
Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
+ + P E SN N Y L HE
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------------------YQLHLHES 266
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
VL + F Y G + D N W + Q S E S VL +
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDKYI 321
Query: 514 ATASSDQTAKLWTV 527
T S D+ A ++ V
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
L++ F GH++ S +DI+ D G+KL T D T + W + +L Q + ++++
Sbjct: 175 LVRQFQGHTDGAS-CIDISND--GTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFS 229
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
+ + PTG+ + G + + + + Q L HE V S F Y G ++ KDN
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNL 288
Query: 607 CCIWRS 612
WR+
Sbjct: 289 LNAWRT 294
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 90/257 (35%), Gaps = 22/257 (8%)
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
+ S + D LI G S++ +WD+ A T R + LT +
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDL----------AAPTPRIKAE----LTSSAPACY 145
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
+ + + S DG +WD+ + H D I G+KL T D
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
T W + +L Q + S++ + + +G LA ++ V +
Sbjct: 206 TVRSWDLREGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY- 259
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
+ H + V + F GK +S +D W T G I K V SC + +
Sbjct: 260 -QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVD 317
Query: 595 GDTIITASKDNTCCIWR 611
I+T S D ++
Sbjct: 318 DKYIVTGSGDKKATVYE 334
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 28/267 (10%)
Query: 282 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCSMDHTA 334
YG ++ T S DKT+K++ E + I T GH V P T SCS D
Sbjct: 20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 335 RIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTR-- 388
I+ +G+ ++ H+ V S+Q++ ML+ S D + V + + T
Sbjct: 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139
Query: 389 --NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW----DVRTM 442
+A+A AS P I +E + + D K+W D +T
Sbjct: 140 IIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 443 CCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499
TL+ H D V D+A+ + S +A+ S D+T +WT + +
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 500 KVL-DIAFDYSGSKLATASSDQTAKLW 525
VL ++ SG+ LA + D LW
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
H + + D DY G ++AT SSD+T ++ V G +L+ T GH V +V D A
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
G+ LA+ S D +W G + HS V+ V + P G ++L S D
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 116/309 (37%), Gaps = 72/309 (23%)
Query: 325 FCSCSMDHTARIFNTNSGQEMH----TLKAHTGPVISLQFSSDR--NMLITGSFDSSIVV 378
+CS D T +IF E H TL H GPV + ++ + +L + S+D +++
Sbjct: 24 MATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTAKL 436
+ E R S +H + HS +++ + + M+ +S DG +
Sbjct: 82 ------------WKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 437 WDVRTMCCFYTLKNHEDEVLD---IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
+ + + ++D I + + AT D N G E
Sbjct: 128 VEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHN-----GTKE------- 169
Query: 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE---LLQTFYGHSNEVSKVSFH 550
K T +D K+W + L T GHS+ V V++
Sbjct: 170 ----------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 551 PTGKL---VLSGSQDTTCRLWS--TESGECIQVLKAHE---DDVFSCGFNYNGDTIITAS 602
PT L + S SQD TC +W+ E G + L E D ++ ++ +G+ + +
Sbjct: 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 603 KDNTCCIWR 611
DN +W+
Sbjct: 274 GDNKVTLWK 282
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 39/243 (16%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEV--LDIAF 460
I H++ I + + ++ +A+ S D T K+++V T TL HE V +D A
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ LA+ S D +W G + HS V+ V +Y G L ASSD
Sbjct: 64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPMLLVASSD 122
Query: 520 QTAKLWTVGGAVELLQT-------FYGHSNEVSKVSFHPT-------------GKLVLSG 559
+ VE + H+ V+ S+ P + ++G
Sbjct: 123 GKVSV------VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 560 SQDTTCRLWSTESGECIQVLKA----HEDDVFSCGFNYN---GDTIITASKDNTCCIWRS 612
D ++W S VL++ H D V ++ + + S+D TC IW
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236
Query: 613 MNR 615
N
Sbjct: 237 DNE 239
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 44/252 (17%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITF--DKFGTRCLTGSYDRTCKLWDIKSGH--EIC 223
K+ E + ++ L H P+ + + KFGT + SYD +W ++G +I
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA 93
Query: 224 TYRGHQNVVYAVAFS-EPYG--CLTGSYDRTCKLWDIKS----------GHEICTYRGHQ 270
+ H V +V ++ YG L S D + + K H I G
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI----GVN 149
Query: 271 NVVYAVAFSEPYGD--------KILTGSFDKTLKLW---ASAKEECIQ-TYRGHS---AE 315
+ +A A E G+ K +TG D +K+W + A+ ++ T GHS +
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 316 VTFSPD---QSTFCSCSMDHTARIFNTNSGQ---EMHTLKAHTGPVISLQ--FSSDRNML 367
V +SP +S S S D T I+ ++ Q + LK P + + +S N+L
Sbjct: 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269
Query: 368 ITGSFDSSIVVW 379
D+ + +W
Sbjct: 270 ALSGGDNKVTLW 281
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 501 VLDIAFDYSGSKLATASSDQTAKLWTVGG--AVELLQTFYGHSNEVSKVSF--HPTGKLV 556
VLD+ + GSK+ TAS D+TAK+W + A+++ Q H V + + P V
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAPNYSCV 144
Query: 557 LSGSQDTTCRLWSTESGECIQVLKAHE 583
++GS D T + W T S + VL+ E
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPE 171
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 240
K + H P+ ++ + G++ T S D+T K+WD+ S I + V P
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP 139
Query: 241 -YGC-LTGSYDRTCKLWDIKSGHEI 263
Y C +TGS+D+T K WD +S + +
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 116/295 (39%), Gaps = 37/295 (12%)
Query: 244 LTGSYDRTCKLWDIK-SGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 301
+ GS+ + W+++ SG I + H V V +S+ G K+ T S DKT K+W +
Sbjct: 58 IAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD-GSKVFTASCDKTAKMWDLS 116
Query: 302 KEECIQTYRGHSAEVTF-----SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVI 356
+ IQ + H A V +P+ S + S D T + ++T S M L+ +
Sbjct: 117 SNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-----LP 170
Query: 357 SLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
+ +D M + + + ++V+ ++ Q + ES + H+ + I + +
Sbjct: 171 ERCYCADVIYPMAVVATAERGLIVYQLENQ-PSEFRRIESPLKHQHRCVAIFKDKQNKPT 229
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLD------IAFDYSGSKLA 468
+A ++ D T C + + D IAF LA
Sbjct: 230 GFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289
Query: 469 TASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA-----FDYSGSKLATASS 518
T SD + W +L + S+ LD F+++G+ A ASS
Sbjct: 290 TVGSDGRFSFWDKDARTKL---------KTSEQLDQPISACCFNHNGNIFAYASS 335
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 31/143 (21%)
Query: 315 EVTFSPDQSTFC--------------SCSMDHTARIFNT-NSGQEM-HTLKAHTGPVISL 358
EVT SPD S C + S + R + +SGQ + + HTGPV+ +
Sbjct: 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV 92
Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
+S D + + T S D + +WD+ + A + + A K IH + +
Sbjct: 93 CWSDDGSKVFTASCDKTAKMWDL----SSNQAIQIAQHDAPVKTIHWIKAPNY------- 141
Query: 419 NFSNSMIASSSLDGTAKLWDVRT 441
S + + S D T K WD R+
Sbjct: 142 ----SCVMTGSWDKTLKFWDTRS 160
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGG--AVELLQTFYGHSNEVSKVLDI-AFD 507
H VLD+ + GSK+ TAS D+TA +W + A+++ Q H V + I A +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAPN 140
Query: 508 YSGSKLATASSDQTAKLWTVGGAVELL 534
YS + T S D+T K W + ++
Sbjct: 141 YSC--VMTGSWDKTLKFWDTRSSNPMM 165
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 510 GSKLATASSDQTAKLWTV---GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
G+ L S + W V G + Q H+ V V + G V + S D T +
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAK 111
Query: 567 LWSTESGECIQVLKAHEDDVFSCGF--NYNGDTIITASKDNTCCIW--RSMN 614
+W S + IQ+ + H+ V + + N ++T S D T W RS N
Sbjct: 112 MWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN 162
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 28/267 (10%)
Query: 282 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCSMDHTA 334
YG ++ T S DKT+K++ E + I T GH V P T SCS D
Sbjct: 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 335 RIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTR-- 388
I+ +G+ ++ H+ V S+Q++ +L+ S D + V + + T
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 389 --NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW----DVRTM 442
+A+A AS P I +E + + D K+W D +T
Sbjct: 140 IIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 443 CCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499
TL+ H D V D+A+ + S LA+ S D+T +WT + +
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 500 KVL-DIAFDYSGSKLATASSDQTAKLW 525
VL ++ SG+ LA + D LW
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
H + + D DY G +LAT SSD+T ++ V G +L+ T GH V +V D A
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
G+ LA+ S D +W G + HS V+ V + P G L+L S D
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 92/243 (37%), Gaps = 39/243 (16%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEV--LDIAF 460
I H++ I + + ++ +A+ S D T K+++V T TL HE V +D A
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ LA+ S D +W G + HS V+ V +Y G L ASSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVASSD 122
Query: 520 QTAKLWTVGGAVELLQT-------FYGHSNEVSKVSFHPT-------------GKLVLSG 559
+ VE + H+ V+ S+ P + ++G
Sbjct: 123 GKVSV------VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 560 SQDTTCRLWSTESGECIQVLKA----HEDDVFSCGFNYN---GDTIITASKDNTCCIWRS 612
D ++W S VL++ H D V ++ + + S+D TC IW
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236
Query: 613 MNR 615
N
Sbjct: 237 DNE 239
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 44/252 (17%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITF--DKFGTRCLTGSYDRTCKLWDIKSGH--EIC 223
K+ E + ++ L H P+ + + KFGT + SYD +W ++G +I
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA 93
Query: 224 TYRGHQNVVYAVAFS-EPYG--CLTGSYDRTCKLWDIKS----------GHEICTYRGHQ 270
+ H V +V ++ YG L S D + + K H I G
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI----GVN 149
Query: 271 NVVYAVAFSEPYGD--------KILTGSFDKTLKLW---ASAKEECIQ-TYRGHS---AE 315
+ +A A E G+ K +TG D +K+W + A+ ++ T GHS +
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 316 VTFSPD---QSTFCSCSMDHTARIFNTNSGQ---EMHTLKAHTGPVISLQ--FSSDRNML 367
V +SP +S S S D T I+ ++ Q + LK P + + +S N+L
Sbjct: 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269
Query: 368 ITGSFDSSIVVW 379
D+ + +W
Sbjct: 270 ALSGGDNKVTLW 281
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 271 NVVYAVAFSEPYGDKILTGSFDKTLKLW--ASAKEECIQTYRGHSAEVTFSPDQSTFCSC 328
N V +A+S G+ I+TG + L+LW A + +R V ++ D + S
Sbjct: 109 NQVTCLAWSHD-GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 329 SMDHTARIFNTNSGQEMH--TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG 386
+++ ++N SG M LK G I+ + S L D V D G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL---GVDVEWVDDDKFVIPG 224
Query: 387 TRNAYAESTYRASHK-PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW---DVRTM 442
+ A Y+ + K P L GH IS FN +N ++ S+S DGT ++W + +
Sbjct: 225 PKGAIF--VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282
Query: 443 CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481
CFY H ++ ++ K+ + S D + LW++
Sbjct: 283 NCFY---GHSQSIVSASW-VGDDKVISCSMDGSVRLWSL 317
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 416 CL-FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
CL ++ + I + +G +LW+ +T L H ++ + ++ G+ + + +
Sbjct: 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171
Query: 475 TANLWTV-GGAV----ELLQT------FYGHSNEVSKVLDI------AFDYSGSKLATAS 517
LW V G V EL +T HS + S +D+ F G K A
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
T K T GH +S + F+ T KL+LS S D T R+W +G
Sbjct: 232 YQITEKTPT--------GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
H + S + D +I+ S D + +W
Sbjct: 284 CFYGHSQSIVSASW-VGDDKVISCSMDGSVRLW 315
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 57/332 (17%), Positives = 117/332 (35%), Gaps = 74/332 (22%)
Query: 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302
+TG + +LW+ K+G + H+ + +V +++ G I++ + LW
Sbjct: 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD-GTHIISMDVENVTILWNVIS 180
Query: 303 EECIQTYR------------GHSAEVTFSPD-----QSTFCSCSMDHTARIFNTNSGQEM 345
+Q + HS + + D F ++
Sbjct: 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPT 240
Query: 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
L H GP+ L+F+ +L++ S D ++ +W H
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW------------------------HG 276
Query: 406 LTGHSQEISNCLFNFSNSMIASS----------SLDGTAKLWDVRTMCCFYTLKNHEDEV 455
G+SQ NC + S S++++S S+DG+ +LW ++ +
Sbjct: 277 GNGNSQ---NCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333
Query: 456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH------------------SNE 497
G K A A D N++ + ++ YG+ S +
Sbjct: 334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393
Query: 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGG 529
+ D++++ +G+K++ A S Q + + G
Sbjct: 394 NDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
L H P++ + F+ L+ S D T ++W +G+ + GH + + ++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 243 CLTGSYDRTCKLWDIK 258
++ S D + +LW +K
Sbjct: 303 VISCSMDGSVRLWSLK 318
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 227 GHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGD 284
GH + + F++ L + S D T ++W +G+ + GH Q++V A + D
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD---D 301
Query: 285 KILTGSFDKTLKLWA 299
K+++ S D +++LW+
Sbjct: 302 KVISCSMDGSVRLWS 316
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
GH ++V+ V + + YG C + + + KL S E+ ++R H + + A+ ++
Sbjct: 7 GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
P YG I + S+DKT+KLW EE PDQ CS R +N
Sbjct: 66 PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 99
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
++ TL G + S++F+ L D + ++D R+ S +
Sbjct: 100 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 155
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
P H Q +S C FS +A S+L+ + + L H+
Sbjct: 156 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 212
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
+ I++ S + +AT D ++ + + L + +SN D+
Sbjct: 213 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM 272
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
D G + +++++ A+L VELL H+ EV VS++ TG ++ S D R
Sbjct: 273 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 329
Query: 567 LW-STESGE--CIQVLKAHE 583
LW +T S E C+ V+ A +
Sbjct: 330 LWKATYSNEFKCMSVITAQQ 349
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 139/328 (42%), Gaps = 50/328 (15%)
Query: 192 NITFDKFGTRCLTGSYDRTCKLWDIK---SGHEIC-TYRGHQNVVYAVAFSEP-YGCL-- 244
++ +D +G T S D+ K++ + S E+ ++R H + + A+ ++ P YG +
Sbjct: 14 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 73
Query: 245 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 294
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 74 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 133
Query: 295 LKLWASAKEECIQTYRGHSAEVTFS-PD----QSTFC-------------SCSMDHTARI 336
L+L+ + + ++++ S S P QS FC + S A I
Sbjct: 134 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 193
Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
+ ++H ++ + ++++ + S+ SI W G ++ +
Sbjct: 194 YQRGKDGKLH---------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR-IF 243
Query: 397 RASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLD-GTAKLWDVRTMCCFYTLKNHED- 453
+ + K + + S SN N ++ M A D T + ++++ L H+D
Sbjct: 244 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 303
Query: 454 --EVLDIAFDYSGSKLATASSDQTANLW 479
EV ++++ +G+ L++A D LW
Sbjct: 304 NGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
GH ++V+ V + + YG C + + + KL S E+ ++R H + + A+ ++
Sbjct: 9 GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
P YG I + S+DKT+KLW EE PDQ CS R +N
Sbjct: 68 PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 101
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
++ TL G + S++F+ L D + ++D R+ S +
Sbjct: 102 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
P H Q +S C FS +A S+L+ + + L H+
Sbjct: 158 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 214
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
+ I++ S + +AT D ++ + + L + +SN D+
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM 274
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
D G + +++++ A+L VELL H+ EV VS++ TG ++ S D R
Sbjct: 275 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 567 LW-STESGE--CIQVLKAHE 583
LW +T S E C+ V+ A +
Sbjct: 332 LWKATYSNEFKCMSVITAQQ 351
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 139/328 (42%), Gaps = 50/328 (15%)
Query: 192 NITFDKFGTRCLTGSYDRTCKLWDIK---SGHEIC-TYRGHQNVVYAVAFSEP-YGCL-- 244
++ +D +G T S D+ K++ + S E+ ++R H + + A+ ++ P YG +
Sbjct: 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75
Query: 245 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 294
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135
Query: 295 LKLWASAKEECIQTYRGHSAEVTFS-PD----QSTFC-------------SCSMDHTARI 336
L+L+ + + ++++ S S P QS FC + S A I
Sbjct: 136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195
Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
+ ++H ++ + ++++ + S+ SI W G ++ +
Sbjct: 196 YQRGKDGKLH---------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR-IF 245
Query: 397 RASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLD-GTAKLWDVRTMCCFYTLKNHED- 453
+ + K + + S SN N ++ M A D T + ++++ L H+D
Sbjct: 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305
Query: 454 --EVLDIAFDYSGSKLATASSDQTANLW 479
EV ++++ +G+ L++A D LW
Sbjct: 306 NGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 242 GCLTGSYDRTCKLWDIKSGHEI-----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 296
G L S +LW++ + C Y H ++V V+ G + ++GS D +K
Sbjct: 95 GILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLS-SGTQAVSGSKDICIK 152
Query: 297 LWASAKEECIQTYRGHSAEVT---FSPDQ-STFCSCSMDHTARIFNTN 340
+W A++ + +YR H+A+VT SP + S F SCS D+ +++T
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG---CLTG 246
++ ++ GT+ ++GS D K+WD+ + +YR H V VA S P+ L+
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS-PHKDSVFLSC 188
Query: 247 SYDRTCKLWDI---KSGHEI-CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302
S D LWD K +I C+ G+ + ++A+ + + G + T+ L +
Sbjct: 189 SEDNRILLWDTRCPKPASQIGCSAPGY--LPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246
Query: 303 EECIQTYRGHSAEVT---FSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
C+ + HS VT FSP F S S D + + ++ S E+ +AH V
Sbjct: 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS-SLSELFRSQAHRDFVRDA 305
Query: 359 QFSS-DRNMLITGSFDSSIV 377
+S + ++L T +D +V
Sbjct: 306 TWSPLNHSLLTTVGWDHQVV 325
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 203 LTGSYDRTCKLWDIKSGHEI-----CTYRGHQNVVYAVA-FSEPYGCLTGSYDRTCKLWD 256
L S +LW++ + C Y H ++V V+ S ++GS D K+WD
Sbjct: 97 LVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLW 298
+ + +YR H V VA S P+ D + L+ S D + LW
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAAS-PHKDSVFLSCSEDNRILLW 197
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT 597
Y H + VS VS +G +SGS+D ++W + +AH V + + D+
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 598 I-ITASKDNTCCIW 610
+ ++ S+DN +W
Sbjct: 184 VFLSCSEDNRILLW 197
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 106/272 (38%), Gaps = 28/272 (10%)
Query: 277 AFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCS 329
A + YG + T S DKT+K++ E + I T GH V P T SCS
Sbjct: 15 AVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 330 MDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQF 385
D I+ +G+ ++ H+ V S+Q++ L+ S D + V + +
Sbjct: 75 YDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENG 134
Query: 386 GTR----NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW---- 437
T +A+A AS P I +E + + D K+W
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGH 494
D +T TL+ H D V D+A+ + S A+ S D+T +WT +
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 495 SNEVSKVL-DIAFDYSGSKLATASSDQTAKLW 525
+ VL ++ SG+ LA + D LW
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
H + + D DY G + AT SSD+T ++ V G +L+ T GH V +V D A
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
G+ LA+ S D +W G + HS V+ V + P G +L S D
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 512 KLATASSDQTAKLWTVGGAVE---LLQTFYGHSNEVSKVSFHPTGKL---VLSGSQDTTC 565
K T +D K+W + L T GHS+ V V++ PT L S SQD TC
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 566 RLWS--TESGECIQVLKAHE---DDVFSCGFNYNGDTIITASKDNTCCIWR 611
+W+ E G + L E D ++ ++ +G+ + + DN +W+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 282
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 93/246 (37%), Gaps = 45/246 (18%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEV--LDIAF 460
I H++ I + + ++ A+ S D T K+++V T TL HE V +D A
Sbjct: 4 IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
G+ LA+ S D +W G + HS V+ V +Y G L ASSD
Sbjct: 64 PKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPXLLVASSD 122
Query: 520 QTAKLWTVGGAVELLQT-------FYGHSNEVSKVSFHPT-------------GKLVLSG 559
+ VE + H+ V+ S+ P + ++G
Sbjct: 123 GKVSV------VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG 176
Query: 560 SQDTTCRLWSTESGECIQVLKA----HEDDVFSCGFNYNGDTII------TASKDNTCCI 609
D ++W S VL++ H D V ++ T++ + S+D TC I
Sbjct: 177 GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYXASVSQDRTCII 233
Query: 610 WRSMNR 615
W N
Sbjct: 234 WTQDNE 239
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 101/252 (40%), Gaps = 44/252 (17%)
Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITF--DKFGTRCLTGSYDRTCKLWDIKSGH--EIC 223
K+ E + ++ L H P+ + + KFGT + SYD +W ++G +I
Sbjct: 34 KIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIA 93
Query: 224 TYRGHQNVVYAVAFS-EPYG--CLTGSYDRTCKLWDIKS----------GHEICTYRGHQ 270
+ H V +V ++ YG L S D + + K H I G
Sbjct: 94 VHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAI----GVN 149
Query: 271 NVVYAVAFSEPYGD--------KILTGSFDKTLKLW---ASAKEECIQ-TYRGHS---AE 315
+ +A A E G+ K +TG D +K+W + A+ ++ T GHS +
Sbjct: 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209
Query: 316 VTFSPD---QSTFCSCSMDHTARIFNTNSGQ---EMHTLKAHTGPVI--SLQFSSDRNML 367
V +SP +S S S D T I+ ++ Q + LK P + +S N+L
Sbjct: 210 VAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269
Query: 368 ITGSFDSSIVVW 379
D+ + +W
Sbjct: 270 ALSGGDNKVTLW 281
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
GH ++V+ V + + YG C + + + KL S E+ ++R H + + A+ ++
Sbjct: 9 GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
P YG I + S+DKT+KLW EE PDQ CS R +N
Sbjct: 68 PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 101
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
++ TL G + S++F+ L D + ++D R+ S +
Sbjct: 102 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXK 157
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
P H Q +S C FS +A S+L+ + + L H+
Sbjct: 158 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 214
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
+ I++ S + +AT D ++ + + L + +SN D+
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDX 274
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
D G + +++++ A+L VELL H+ EV VS++ TG ++ S D R
Sbjct: 275 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 567 LW-STESGE--CIQVLKAHE 583
LW +T S E C V+ A +
Sbjct: 332 LWKATYSNEFKCXSVITAQQ 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/331 (20%), Positives = 137/331 (41%), Gaps = 56/331 (16%)
Query: 192 NITFDKFGTRCLTGSYDRTCKLWDIK---SGHEIC-TYRGHQNVVYAVAFSEP-YGCL-- 244
++ +D +G T S D+ K++ + S E+ ++R H + + A+ ++ P YG +
Sbjct: 16 DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75
Query: 245 TGSYDRTCKLWDIKSGHE---------ICTYRGHQNVVYAVAFSEPY-GDKILTGSFDKT 294
+ SYD+T KLW+ E +CT + +Y+V F+ + G K+ D
Sbjct: 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI 135
Query: 295 LKLWASAKEECIQTYRGHSAEVTFS-PD----QSTFC-------------SCSMDHTARI 336
L+L+ + + ++++ S S P QS FC + S A I
Sbjct: 136 LRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAII 195
Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
+ ++H ++ + ++++ + S+ SI W G ++ +
Sbjct: 196 YQRGKDGKLH---------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR-IF 245
Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG-----TAKLWDVRTMCCFYTLKNH 451
+ + K + + S SN F NS G T + ++++ L H
Sbjct: 246 KITEKLSPLASEESLTNSN---XFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEH 302
Query: 452 ED---EVLDIAFDYSGSKLATASSDQTANLW 479
+D EV ++++ +G+ L++A D LW
Sbjct: 303 DDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 224 TYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
T+ + V V FS G +T DR +D KSG + Q V F+
Sbjct: 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Query: 282 YGD--KILTGSFDKTLKLWASAKEECIQTYR------GHSAEVTFSPDQSTFCSCSMDHT 333
+ D K T D T+++W +C+Q + G+ + S S+D T
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
+ + + T+ H + +L N LI+GS+D I+ W
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEW 362
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 426 ASSSLDGTAKLWDVRTMCCF--YTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVG 482
A+ D T ++WDV T C +TL + + +G+ ++ + S D T N + +G
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 483 GAVELLQTFYGHSNEVSKV 501
E+L+T GH+ ++ +
Sbjct: 328 HD-EVLKTISGHNKGITAL 345
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 14/166 (8%)
Query: 224 TYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
T+ + V V FS G +T DR +D KSG + Q V F+
Sbjct: 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Query: 282 YGD--KILTGSFDKTLKLWASAKEECIQTYR------GHSAEVTFSPDQSTFCSCSMDHT 333
+ D K T D T+++W +C+Q + G+ + S S+D T
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
+ + + T+ H + +L N LI+GS+D I W
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 426 ASSSLDGTAKLWDVRTMCCF--YTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVG 482
A+ D T ++WDV T C +TL + + +G+ ++ + S D T N + +G
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 483 GAVELLQTFYGHSNEVSKV 501
E+L+T GH+ ++ +
Sbjct: 328 HD-EVLKTISGHNKGITAL 345
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 40/231 (17%)
Query: 317 TFSPDQSTFCSCSMDHTARIFNT--NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
++ D++ C +H I+ N ++H LK H G V + ++ D N ++T D
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDR 74
Query: 375 SIVVWDIQYQFGTR-------NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427
+ VW ++ + N A A ++ + S+ IS C F N
Sbjct: 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---- 130
Query: 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV------ 481
W V C + K VL + + + LA S D +++
Sbjct: 131 ---------WWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177
Query: 482 --------GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
G + + + S+ V + F +GS++A S D T L
Sbjct: 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA 505
+ LK H +V I + +++ T +D+ A +WT+ G N ++ + A
Sbjct: 46 HELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
Query: 506 FDY------SGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
+ SGS++ + +Q W + +++ V + +HP L+ +
Sbjct: 106 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAA 159
Query: 559 GSQDTTCRLWS------------TESGECIQVLKAHEDDVFSCG------FNYNGDTIIT 600
GS D CR++S T G + + + SCG F+ NG +
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219
Query: 601 ASKDNTCCI 609
S D+T C+
Sbjct: 220 VSHDSTVCL 228
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 40/231 (17%)
Query: 317 TFSPDQSTFCSCSMDHTARIFNT--NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
++ D++ C +H I+ N ++H LK H G V + ++ D N ++T D
Sbjct: 15 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74
Query: 375 SIVVWDIQYQFGTR-------NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427
+ VW ++ + N A A ++ + S+ IS C F N
Sbjct: 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---- 130
Query: 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV------ 481
W V C + K VL + + + LA S D +++
Sbjct: 131 ---------WWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 177
Query: 482 --------GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
G + + + S+ V + F +GS++A S D T L
Sbjct: 178 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCL 228
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA 505
+ LK H +V + + +++ T +D+ A +WT+ G N ++ + A
Sbjct: 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
Query: 506 FDY------SGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
+ SGS++ + +Q W + +++ V + +HP L+ +
Sbjct: 106 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSVLLAA 159
Query: 559 GSQDTTCRLWS------------TESGECIQVLKAHEDDVFSCG------FNYNGDTIIT 600
GS D CR++S T G + + + SCG F+ NG +
Sbjct: 160 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW 219
Query: 601 ASKDNTCCI 609
S D+T C+
Sbjct: 220 VSHDSTVCL 228
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 37/169 (21%)
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLK------NHEDEVLDIAFDYSGSKLATASSDQTAN 477
+IA+ +GT ++ ++ T+ Y + N+ + + + F GS LA A +
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF- 267
Query: 478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
G + L +T +G E L + S + L
Sbjct: 268 -----GCITLYETEFG---ERIGSLSVPTHSSQASLGE---------------------- 297
Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV 586
+ HS+ V +SF+ +G+ + S D R W ++ E I L H DD+
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 343 QEMHTLKAHTGPVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ H++ ++ + S++FS ++L I +S + + +FG R +S
Sbjct: 234 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 293
Query: 402 PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV---LDI 458
+ HS + + FN S + S+ DG + WDV+T TL H D++ DI
Sbjct: 294 SLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 352
Query: 459 -AFDYSGSKLA 468
A D G LA
Sbjct: 353 LAVDEHGDSLA 363
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC----RLWSTESGECIQVLK------- 580
E + +SN + V F P G L L+ + D+ L+ TE GE I L
Sbjct: 234 ESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 292
Query: 581 ------AHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
AH V S FN +G+T+ +A D W
Sbjct: 293 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 328
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV 586
+ HS+ V +SF+ +G+ + S D R W ++ E I L H DD+
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 343 QEMHTLKAHTGPVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401
+ H++ ++ + S++FS ++L I +S + + +FG R +S
Sbjct: 224 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 283
Query: 402 PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV---LDI 458
+ HS + + FN S + S+ DG + WDV+T TL H D++ DI
Sbjct: 284 SLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342
Query: 459 -AFDYSGSKLA 468
A D G LA
Sbjct: 343 LAVDEHGDSLA 353
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC----RLWSTESGECIQVLK------- 580
E + +SN + V F P G L L+ + D+ L+ TE GE I L
Sbjct: 224 ESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ 282
Query: 581 ------AHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
AH V S FN +G+T+ +A D W
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 300 SAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA-HTGP--VI 356
S E C+ + G ++ +P ++ +D ++ +F+ + KA + P +I
Sbjct: 182 STSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTII 241
Query: 357 SLQFSSDRNMLITGSFDSSIVVWDI 381
S+ F S N+L+ S D + V D+
Sbjct: 242 SMIFLSTYNVLVMLSLDYKLKVLDL 266
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 300 SAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA-HTGP--VI 356
S E C+ + G ++ +P ++ +D ++ +F+ + KA + P +I
Sbjct: 180 STSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTII 239
Query: 357 SLQFSSDRNMLITGSFDSSIVVWDI 381
S+ F S N+L+ S D + V D+
Sbjct: 240 SMIFLSTYNVLVMLSLDYKLKVLDL 264
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 480 TVGGAVELLQTFYGHSNEV---------SKVLDIAFDYSGSKLATASSDQTAKLWTVGGA 530
T GG++ + + G NE + V D+A+ S + AS +LW +
Sbjct: 67 TWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAW-VSEKGILVASDSGAVELWEILEK 125
Query: 531 VELLQ---TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
LL Y H + V +S G +SG +D + ++W ++ AH +V
Sbjct: 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185
Query: 588 SCGFNYNGDTI-ITASKDNTCCIW 610
DTI ++ +D +W
Sbjct: 186 CVAACPGKDTIFLSCGEDGRILLW 209
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 16/195 (8%)
Query: 203 LTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVA-FSEPYGCLTGSYDRTCKLWDI 257
L S +LW+I + + H ++V ++ FS+ ++G D + K+WD+
Sbjct: 109 LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168
Query: 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHSAE- 315
+ +Y H + V VA P D I L+ D + LW + K + +++
Sbjct: 169 SQKAVLKSYNAHSSEVNCVAAC-PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDT 227
Query: 316 ----VTFSPDQSTFCSCSMDHTARI--FNTNSGQEMHTLKAHTGPVISLQFS-SDRNMLI 368
VT+ P++ +C D T + N + T H+ + L +S L
Sbjct: 228 IPTSVTWHPEKDDTFACG-DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLA 286
Query: 369 TGSFDSSIVVWDIQY 383
+ S D ++ V D +
Sbjct: 287 SISEDCTVAVLDADF 301
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 300 SAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA-HTGP--VI 356
S E C+ + G ++ +P ++ +D ++ +F+ + KA + P +I
Sbjct: 182 STSEICVSFFNGGLTKIILNPKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTII 241
Query: 357 SLQFSSDRNMLITGSFDSSIVVWDI 381
S+ F S N+L+ S D + V D+
Sbjct: 242 SMIFLSTYNVLVMLSLDYKLKVLDL 266
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 409 HSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTM 442
H ++++ FN + ++A+SS+D T KLWD+R +
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 236
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 409 HSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTM 442
H ++++ FN + ++A+SS+D T KLWD+R +
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI 237
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
+WD + Q + T P+H + H + ++A+ DG +W
Sbjct: 216 IWDFRQQGNEPSQILSLT--GDRVPLHCVDRHPNQ---------QHVVATGGQDGMLSIW 264
Query: 438 DVRTMCCFYT-LKNHEDEVLDIAFDYSGSK-LATASSDQTANLW 479
DVR + LK HE E+ ++ F S + L T S D +LW
Sbjct: 265 DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED--GSLW 306
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 212 KLWDIKS-GHE---ICTYRGHQNVVYAV--AFSEPYGCLTGSYDRTCKLWDIKSG-HEIC 264
K+WD + G+E I + G + ++ V ++ + TG D +WD++ G +
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQST 324
+ H+ ++ V F + + T S D +L W ++ + ++ H + ST
Sbjct: 275 LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRS-----ST 329
Query: 325 FCSCSMDHTARIFNT 339
F S S+ + A + +
Sbjct: 330 FLSHSISNQANVHQS 344
>pdb|3RYE|A Chain A, Human Fdps Synthase In Complex With A N-Methyl Pyridinum
Bisphosphonate
pdb|3S4J|A Chain A, Human Fdps Synthase In Complex With A Rigid Analog Of
Risedronate
Length = 349
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 75 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 112
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420
S + L TG F ++ +W+++ A P++ + GH +EI N +
Sbjct: 77 SLQQRYLATGDFGGNLHIWNLE---------------APEMPVYSVKGH-KEIINAIDGI 120
Query: 421 SNSM-------IASSSLDGTAKLWDVR 440
I + S DGT K+WD R
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPR 147
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/192 (18%), Positives = 77/192 (40%), Gaps = 41/192 (21%)
Query: 245 TGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPY-----GDKILTGSFDKTLKLW 298
TG + +W++++ + + +GH+ ++ A+ +I+TGS D T+K+W
Sbjct: 85 TGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144
Query: 299 ----------------ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG 342
K +C G++ ++ ++ C+ + ++F+ +
Sbjct: 145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNA----YNQEERVVCAGYDNGDIKLFDLRNM 200
Query: 343 QEMHTLKAHTGPVISLQFSSDR-----NMLITGSFDSSIVVWDIQYQFGTR-------NA 390
G V SL+F DR N L+ S + V+D++ Q T+ A
Sbjct: 201 ALRWETNIKNG-VCSLEF--DRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA 257
Query: 391 YAESTYRASHKP 402
+ + ++ H P
Sbjct: 258 HKSTVWQVRHLP 269
>pdb|3B7L|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Minodronate
Length = 356
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 82 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 119
>pdb|2F7M|F Chain F, Crystal Structure Of Unliganded Human Fpps
pdb|2F89|F Chain F, Crystal Structure Of Human Fpps In Complex With
Pamidronate
pdb|2F8C|F Chain F, Crystal Structure Of Fpps In Complex With Zoledronate
pdb|2F8Z|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Isopentenyl Diphosphate
pdb|2F92|F Chain F, Crystal Structure Of Human Fpps In Complex With
Alendronate
pdb|2F94|F Chain F, Crystal Structure Of Human Fpps In Complex With
Ibandronate
pdb|2F9K|F Chain F, Crystal Structure Of Human Fpps In Complex With
Zoledronate And Zn2+
pdb|3N1V|F Chain F, Human Fpps Complex With Fbs_01
pdb|3N1W|F Chain F, Human Fpps Complex With Fbs_02
pdb|3N3L|F Chain F, Human Fpps Complex With Fbs_03
pdb|3N49|F Chain F, Human Fpps Complex With Nov_292
pdb|3N5H|F Chain F, Human Fpps Complex With Nov_304
pdb|3N5J|F Chain F, Human Fpps Complex With Nov_311
pdb|3N6K|F Chain F, Human Fpps Complex With Nov_823
pdb|3N45|F Chain F, Human Fpps Complex With Fbs_04 And Zoledronic AcidMG2+
pdb|3N46|F Chain F, Human Fpps Complex With Nov_980 And Zoledronic AcidMG2+
Length = 350
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 76 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 113
>pdb|1ZW5|A Chain A, X-Ray Structure Of Farnesyl Diphosphate Synthase Protein
Length = 355
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 81 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 118
>pdb|4DEM|F Chain F, Crystal Structure Of Human Fpps In Complex With Ys_04_70
pdb|4H5D|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Pyrophosphate
pdb|4H5E|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Isopentenyl Pyrophosphate
pdb|4H5C|F Chain F, Crystal Structure Of Human Fpps In Ternary Complex With
Ys0470 And Inorganic Phosphate
Length = 375
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 101 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 138
>pdb|3CP6|A Chain A, Crystal Structure Of Human Farnesyl Diphosphate Synthase
(T201a Mutant) Complexed With Mg And Biphosphonate
Inhibitor
Length = 376
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 102 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 139
>pdb|1YQ7|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Risedronate
pdb|1YV5|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With Mg And
Risedronate
pdb|2OPN|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 527
pdb|2OPM|A Chain A, Human Farnesyl Diphosphate Synthase Complexed With
Bisphosphonate Bph- 461
Length = 374
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 100 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 137
>pdb|2QIS|A Chain A, Crystal Structure Of Human Farnesyl Pyrophosphate Synthase
T210s Mutant Bound To Risedronate
Length = 374
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 100 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 137
>pdb|2RAH|A Chain A, Human Fdps Synthase In Complex With Novel Inhibitor
pdb|2VF6|A Chain A, Human Fdps Synthase In Complex With Minodronate
Length = 378
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL 555
+D + WTVG VELLQ F+ ++++ S G++
Sbjct: 104 ADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQI 141
>pdb|3UNL|A Chain A, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|B Chain B, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|C Chain C, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
pdb|3UNL|D Chain D, Crystal Structure Of Ketosteroid Isomerase F54g From
Pseudomonas Testosteroni
Length = 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN 542
AVEL Q +NE + ++F+Y G K A D + G V ++ +G N
Sbjct: 64 AVELTQEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFR--FNGAGKVVSMRALFGEKN 120
>pdb|3NM2|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D38ep39gv40gs42g From Pseudomonas Testosteroni (Tksi)
Length = 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN 542
AVEL Q +NE + ++F+Y G K A D + G V ++ +G N
Sbjct: 64 AVELTQEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFR--FNGAGKVVSMRALFGEKN 120
>pdb|3MHE|A Chain A, Crystal Structure Of Ketosteroid Isomerase P39a From
Pseudomonas Testosteroni (Tksi)
pdb|3MHE|B Chain B, Crystal Structure Of Ketosteroid Isomerase P39a From
Pseudomonas Testosteroni (Tksi)
Length = 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN 542
AVEL Q +NE + ++F+Y G K A D + G V ++ +G N
Sbjct: 64 AVELTQEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFR--FNGAGKVVSMRALFGEKN 120
>pdb|3OV4|A Chain A, Crystal Structure Of Ketosteroid Isomerase P39gv40gs42g
From Pseudomonas Testosteroni (Tksi) Bound To Equilenin
pdb|3OV4|B Chain B, Crystal Structure Of Ketosteroid Isomerase P39gv40gs42g
From Pseudomonas Testosteroni (Tksi) Bound To Equilenin
pdb|3OV4|C Chain C, Crystal Structure Of Ketosteroid Isomerase P39gv40gs42g
From Pseudomonas Testosteroni (Tksi) Bound To Equilenin
pdb|3OV4|D Chain D, Crystal Structure Of Ketosteroid Isomerase P39gv40gs42g
From Pseudomonas Testosteroni (Tksi) Bound To Equilenin
Length = 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN 542
AVEL Q +NE + ++F+Y G K A D + G V ++ +G N
Sbjct: 64 AVELTQEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFR--FNGAGKVVSMRALFGEKN 120
>pdb|1ISK|A Chain A, 3-Oxo-Delta5-Steroid Isomerase, Nmr, 20 Structures
pdb|1ISK|B Chain B, 3-Oxo-Delta5-Steroid Isomerase, Nmr, 20 Structures
Length = 125
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN 542
AVEL Q +NE + ++F+Y G K A D + G V ++ +G N
Sbjct: 64 AVELTQEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFR--FNGAGKVVSMRALFGEKN 120
>pdb|2RAG|A Chain A, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|B Chain B, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|C Chain C, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
pdb|2RAG|D Chain D, Crystal Structure Of Aminohydrolase From Caulobacter
Crescentus
Length = 417
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
+G K A S + N W VG + L++TFY ++ + + ++LA +S+D
Sbjct: 149 AGKKFAFVSME---NSWPVGEDLSLVETFYKEGLRMAGPV----HFRNNQLADSSTDPKG 201
Query: 523 KLW 525
K+W
Sbjct: 202 KIW 204
>pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase
pdb|2DH4|B Chain B, Geranylgeranyl Pyrophosphate Synthase
pdb|2E8T|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8T|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Fspp And Ipp
pdb|2E8U|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8U|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp (P21)
pdb|2E8V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Product Ggpp (P21)
pdb|2E8W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ipp
pdb|2E8X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E8X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Gpp
pdb|2E90|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E90|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Pyrophosphate And Fpp
pdb|2E91|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E91|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-91
pdb|2E92|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E92|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-261
pdb|2E93|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E93|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-629
pdb|2E94|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E94|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-364
pdb|2E95|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2E95|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-675
pdb|2Z7H|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z7H|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-210
pdb|2Z4V|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4V|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Ggpp (Inhibitory Site)
pdb|2Z4W|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4W|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-749
pdb|2Z4X|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4X|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252 (P21)
pdb|2Z4Y|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Y|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-252
pdb|2Z4Z|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z4Z|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-Sc01
pdb|2Z50|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z50|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-28
pdb|2Z52|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z52|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium And Bph-23
pdb|2Z78|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z78|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-806
pdb|2Z7I|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2Z7I|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Inhibitor Bph-742
pdb|2ZEU|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEU|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Bph-715
pdb|2ZEV|A Chain A, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
pdb|2ZEV|B Chain B, S. Cerevisiae Geranylgeranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp And Bph-715
Length = 340
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 95 ITLEYTQGKDIKMKTIDLLDLDENSYCY 122
I L T KDIK+K I +L+ D NS Y
Sbjct: 265 ILLLRTSDKDIKLKLIQILEFDTNSLAY 292
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 312
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 504 KGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 552
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 312
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGDRNVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTL---KLWASAKEECIQTYRGH 312
+G +NV+Y + +G + L TL K+ EEC + YRGH
Sbjct: 117 KGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGH 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,161,903
Number of Sequences: 62578
Number of extensions: 734014
Number of successful extensions: 4194
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1664
Number of HSP's gapped (non-prelim): 682
length of query: 616
length of database: 14,973,337
effective HSP length: 105
effective length of query: 511
effective length of database: 8,402,647
effective search space: 4293752617
effective search space used: 4293752617
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)