Query psy3640
Match_columns 616
No_of_seqs 1266 out of 3235
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 21:53:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 1.1E-58 3.8E-63 501.1 58.5 428 179-613 51-610 (611)
2 1nr0_A Actin interacting prote 100.0 4.7E-58 1.6E-62 496.1 57.8 411 184-615 15-568 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 3.4E-57 1.2E-61 487.7 61.9 405 180-614 9-539 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 2.5E-55 8.4E-60 473.2 61.3 403 178-611 171-577 (577)
5 1pgu_A Actin interacting prote 100.0 1.6E-51 5.4E-56 446.9 56.0 410 178-614 54-614 (615)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-52 1.2E-56 488.2 52.7 412 181-615 609-1159(1249)
7 2oaj_A Protein SNI1; WD40 repe 100.0 3E-52 1E-56 466.7 45.9 424 183-612 13-659 (902)
8 1pgu_A Actin interacting prote 100.0 1.1E-49 3.9E-54 432.2 54.7 407 184-615 15-573 (615)
9 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-50 6.2E-55 473.7 50.0 428 178-615 648-1208(1249)
10 2oaj_A Protein SNI1; WD40 repe 100.0 2.3E-48 7.8E-53 435.4 47.0 422 185-615 56-733 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 9.3E-49 3.2E-53 439.5 42.7 407 177-615 3-461 (814)
12 1vyh_C Platelet-activating fac 100.0 4.7E-46 1.6E-50 382.1 40.1 288 177-481 98-409 (410)
13 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-45 9.6E-50 411.2 44.9 394 178-610 46-501 (814)
14 3ow8_A WD repeat-containing pr 100.0 1.1E-44 3.8E-49 358.8 41.9 286 179-481 24-319 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 7.9E-45 2.7E-49 363.5 40.2 286 177-480 45-340 (340)
16 1vyh_C Platelet-activating fac 100.0 1.3E-44 4.5E-49 371.3 41.1 306 264-613 102-410 (410)
17 3ow8_A WD repeat-containing pr 100.0 2.1E-44 7.2E-49 356.8 40.3 288 263-613 25-320 (321)
18 2pbi_B Guanine nucleotide-bind 100.0 3E-43 1E-47 353.7 42.0 286 178-480 55-354 (354)
19 1got_B GT-beta; complex (GTP-b 100.0 6.2E-43 2.1E-47 349.7 43.7 288 261-611 46-340 (340)
20 2ynn_A Coatomer subunit beta'; 100.0 4.7E-43 1.6E-47 344.8 40.3 289 177-483 3-302 (304)
21 1r5m_A SIR4-interacting protei 100.0 4.2E-43 1.4E-47 362.2 41.0 337 210-613 26-424 (425)
22 1r5m_A SIR4-interacting protei 100.0 9.3E-43 3.2E-47 359.6 43.2 341 184-571 42-424 (425)
23 3iz6_a 40S ribosomal protein R 100.0 1.5E-43 5E-48 359.9 34.8 292 177-484 56-376 (380)
24 2pbi_B Guanine nucleotide-bind 100.0 3.7E-42 1.3E-46 345.8 43.3 288 262-611 56-354 (354)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-42 4.2E-47 348.2 39.3 314 177-579 5-342 (345)
26 2ynn_A Coatomer subunit beta'; 100.0 3.9E-42 1.3E-46 338.2 40.5 292 261-616 4-304 (304)
27 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-41 4E-46 354.0 44.8 324 176-615 107-443 (445)
28 3frx_A Guanine nucleotide-bind 100.0 8.2E-42 2.8E-46 338.3 41.0 288 176-483 6-317 (319)
29 4ery_A WD repeat-containing pr 100.0 2.9E-41 1E-45 333.6 44.1 292 174-482 10-311 (312)
30 1gxr_A ESG1, transducin-like e 100.0 7.4E-42 2.5E-46 341.4 39.8 325 185-613 7-336 (337)
31 3frx_A Guanine nucleotide-bind 100.0 2.4E-41 8.4E-46 334.9 42.7 288 262-615 9-318 (319)
32 4gqb_B Methylosome protein 50; 100.0 5.8E-42 2E-46 341.9 37.3 282 184-484 27-332 (344)
33 4g56_B MGC81050 protein; prote 100.0 2.8E-42 9.5E-47 347.0 34.8 283 184-484 39-344 (357)
34 3iz6_a 40S ribosomal protein R 100.0 7.3E-43 2.5E-47 354.8 30.8 307 252-615 48-376 (380)
35 4g56_B MGC81050 protein; prote 100.0 4.6E-42 1.6E-46 345.4 36.0 325 235-614 11-343 (357)
36 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.7E-41 5.8E-46 339.9 39.9 309 261-615 6-336 (345)
37 3v7d_B Cell division control p 100.0 1.8E-41 6.1E-46 354.8 40.2 343 179-611 113-460 (464)
38 2hes_X YDR267CP; beta-propelle 100.0 9.5E-41 3.2E-45 332.3 42.2 312 217-614 2-328 (330)
39 2pm9_A Protein WEB1, protein t 100.0 1.6E-43 5.4E-48 364.7 22.7 337 186-616 11-416 (416)
40 1erj_A Transcriptional repress 100.0 1.1E-40 3.9E-45 340.2 43.1 293 185-483 62-389 (393)
41 2xzm_R RACK1; ribosome, transl 100.0 5.7E-41 2E-45 336.0 39.5 289 175-483 9-340 (343)
42 4gqb_B Methylosome protein 50; 100.0 3.7E-41 1.3E-45 336.1 37.6 286 312-615 32-332 (344)
43 1erj_A Transcriptional repress 100.0 1.7E-40 5.7E-45 339.0 43.2 293 268-614 62-389 (393)
44 4ery_A WD repeat-containing pr 100.0 3.1E-40 1.1E-44 326.2 42.2 289 261-613 14-311 (312)
45 2hes_X YDR267CP; beta-propelle 100.0 2E-40 6.9E-45 329.9 39.2 295 177-483 4-328 (330)
46 2xzm_R RACK1; ribosome, transl 100.0 2.2E-40 7.4E-45 331.8 39.5 288 262-615 13-341 (343)
47 3vl1_A 26S proteasome regulato 100.0 9.7E-41 3.3E-45 344.4 33.9 322 273-615 59-420 (420)
48 3vl1_A 26S proteasome regulato 100.0 1.2E-40 4E-45 343.8 31.4 343 188-572 57-419 (420)
49 4aow_A Guanine nucleotide-bind 100.0 1.3E-38 4.3E-43 318.5 43.6 292 174-484 25-338 (340)
50 3zwl_B Eukaryotic translation 100.0 2.2E-38 7.7E-43 320.3 43.4 288 178-484 23-347 (369)
51 4aow_A Guanine nucleotide-bind 100.0 2.2E-38 7.6E-43 316.7 41.9 293 259-615 27-338 (340)
52 3gre_A Serine/threonine-protei 100.0 2.7E-40 9.1E-45 343.0 28.7 363 194-611 34-437 (437)
53 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-40 4E-45 349.1 25.3 341 186-571 132-516 (524)
54 1sq9_A Antiviral protein SKI8; 100.0 1.3E-38 4.4E-43 325.9 37.0 288 178-484 7-396 (397)
55 3zwl_B Eukaryotic translation 100.0 2.6E-37 8.9E-42 312.4 45.1 298 262-614 24-346 (369)
56 3dm0_A Maltose-binding peripla 100.0 1E-37 3.4E-42 342.8 43.8 285 179-482 374-692 (694)
57 3gre_A Serine/threonine-protei 100.0 2E-39 6.8E-44 336.5 27.3 349 175-569 50-437 (437)
58 1sq9_A Antiviral protein SKI8; 100.0 5E-38 1.7E-42 321.5 36.5 310 263-615 9-396 (397)
59 1gxr_A ESG1, transducin-like e 100.0 4.7E-37 1.6E-41 306.5 41.6 279 182-481 46-335 (337)
60 3odt_A Protein DOA1; ubiquitin 100.0 3.5E-37 1.2E-41 304.1 40.0 283 176-485 7-298 (313)
61 3k26_A Polycomb protein EED; W 100.0 2.1E-38 7.3E-43 320.2 31.9 299 265-614 13-366 (366)
62 3odt_A Protein DOA1; ubiquitin 100.0 4.6E-37 1.6E-41 303.3 39.4 287 219-615 8-297 (313)
63 3ei3_B DNA damage-binding prot 100.0 2.4E-37 8.1E-42 314.9 38.3 302 175-483 61-382 (383)
64 3i2n_A WD repeat-containing pr 100.0 2.5E-37 8.6E-42 311.2 37.5 292 181-484 12-354 (357)
65 2j04_B YDR362CP, TAU91; beta p 100.0 2.9E-39 1E-43 338.5 23.7 344 221-614 126-517 (524)
66 3dm0_A Maltose-binding peripla 100.0 4.8E-37 1.6E-41 337.4 42.1 286 263-613 375-692 (694)
67 4a11_B DNA excision repair pro 100.0 4.5E-38 1.6E-42 322.7 30.5 361 209-614 23-405 (408)
68 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-37 5.2E-42 314.8 33.7 287 182-486 3-364 (372)
69 2j04_A TAU60, YPL007P, hypothe 100.0 2.3E-39 7.8E-44 329.8 18.6 313 185-561 13-350 (588)
70 3k26_A Polycomb protein EED; W 100.0 1.8E-37 6.2E-42 313.3 32.6 297 182-482 13-365 (366)
71 4h5i_A Guanine nucleotide-exch 100.0 2E-37 6.9E-42 312.4 32.3 294 229-614 14-343 (365)
72 3ei3_B DNA damage-binding prot 100.0 2.3E-37 7.9E-42 315.0 32.7 304 254-614 57-382 (383)
73 3dwl_C Actin-related protein 2 100.0 8.7E-39 3E-43 324.8 21.5 343 181-570 5-377 (377)
74 4e54_B DNA damage-binding prot 100.0 9.5E-38 3.3E-42 323.3 29.0 312 176-576 108-434 (435)
75 1k8k_C P40, ARP2/3 complex 41 100.0 1E-36 3.4E-41 308.8 35.2 288 266-614 4-361 (372)
76 3i2n_A WD repeat-containing pr 100.0 1E-36 3.5E-41 306.8 33.7 293 264-615 12-354 (357)
77 4gga_A P55CDC, cell division c 100.0 1.1E-35 3.6E-40 306.5 39.8 300 231-592 107-415 (420)
78 4a11_B DNA excision repair pro 100.0 1.5E-35 5E-40 304.1 40.7 332 178-528 34-404 (408)
79 2pm9_A Protein WEB1, protein t 100.0 1.4E-37 4.8E-42 320.2 23.7 283 185-483 65-414 (416)
80 2pm7_B Protein transport prote 100.0 1.3E-35 4.6E-40 290.5 36.0 253 181-483 3-285 (297)
81 4aez_A CDC20, WD repeat-contai 100.0 1.3E-35 4.6E-40 303.8 36.6 288 181-488 85-385 (401)
82 4gga_A P55CDC, cell division c 100.0 4.7E-35 1.6E-39 301.7 39.9 278 315-614 110-395 (420)
83 2pm7_B Protein transport prote 100.0 1.6E-35 5.6E-40 289.9 34.6 251 346-613 3-284 (297)
84 4aez_A CDC20, WD repeat-contai 100.0 7.1E-35 2.4E-39 298.5 40.9 291 226-580 88-388 (401)
85 4ggc_A P55CDC, cell division c 100.0 5E-35 1.7E-39 289.4 38.3 281 314-616 29-317 (318)
86 3mmy_A MRNA export factor; mRN 100.0 2E-35 6.8E-40 298.4 36.0 293 175-482 27-345 (368)
87 3dwl_C Actin-related protein 2 100.0 1.2E-36 4.3E-41 308.9 26.3 284 311-612 12-377 (377)
88 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-35 8.7E-40 305.2 36.3 276 181-485 127-416 (435)
89 4e54_B DNA damage-binding prot 100.0 1.9E-36 6.4E-41 313.5 27.1 296 263-615 112-431 (435)
90 4ggc_A P55CDC, cell division c 100.0 3.5E-34 1.2E-38 283.4 40.9 273 190-484 28-316 (318)
91 4h5i_A Guanine nucleotide-exch 100.0 9.9E-36 3.4E-40 300.0 30.1 289 187-573 14-344 (365)
92 1yfq_A Cell cycle arrest prote 100.0 4.2E-35 1.4E-39 293.2 33.9 285 180-481 4-322 (342)
93 3v7d_B Cell division control p 100.0 5.9E-34 2E-38 297.7 43.2 296 263-615 114-422 (464)
94 2j04_A TAU60, YPL007P, hypothe 100.0 4.2E-37 1.4E-41 313.2 18.5 320 228-603 14-350 (588)
95 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.1E-34 1.1E-38 298.0 40.2 281 178-484 150-443 (445)
96 3f3f_A Nucleoporin SEH1; struc 100.0 9.7E-35 3.3E-39 290.8 34.7 288 180-484 4-338 (351)
97 3bg1_A Protein SEC13 homolog; 100.0 1.3E-35 4.3E-40 293.4 26.6 248 181-440 7-292 (316)
98 3dw8_B Serine/threonine-protei 100.0 9.2E-35 3.2E-39 302.2 34.1 277 185-481 26-444 (447)
99 1p22_A F-BOX/WD-repeat protein 100.0 2E-34 6.8E-39 298.5 35.9 277 266-615 129-415 (435)
100 3jrp_A Fusion protein of prote 100.0 3.4E-34 1.1E-38 290.8 34.1 255 179-483 3-287 (379)
101 3bg1_A Protein SEC13 homolog; 100.0 4.5E-35 1.5E-39 289.4 26.6 250 347-613 8-292 (316)
102 1yfq_A Cell cycle arrest prote 100.0 3.9E-34 1.3E-38 286.2 32.8 295 265-611 6-321 (342)
103 3mmy_A MRNA export factor; mRN 100.0 7.7E-34 2.6E-38 286.8 34.6 297 298-614 24-346 (368)
104 3dw8_B Serine/threonine-protei 100.0 4.8E-34 1.7E-38 296.8 30.3 312 269-613 27-445 (447)
105 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-33 8.9E-38 280.4 33.3 307 264-579 5-344 (351)
106 3jrp_A Fusion protein of prote 100.0 4.9E-33 1.7E-37 282.2 33.3 255 343-614 2-287 (379)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-33 5E-38 288.8 27.3 288 315-615 39-343 (402)
108 3vu4_A KMHSV2; beta-propeller 100.0 1.8E-32 6.2E-37 275.3 33.2 278 180-483 12-336 (355)
109 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-32 4.4E-37 281.8 28.1 279 188-484 35-343 (402)
110 1k32_A Tricorn protease; prote 100.0 2.5E-31 8.5E-36 304.6 41.2 408 180-613 45-501 (1045)
111 3jro_A Fusion protein of prote 100.0 2.7E-33 9.4E-38 309.2 23.3 252 180-443 2-287 (753)
112 1k32_A Tricorn protease; prote 100.0 3.8E-31 1.3E-35 303.2 41.2 395 186-615 13-462 (1045)
113 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-31 7.5E-36 276.8 34.8 350 229-614 4-391 (450)
114 3vu4_A KMHSV2; beta-propeller 100.0 1.3E-31 4.5E-36 269.0 31.6 305 213-529 3-336 (355)
115 3bws_A Protein LP49; two-domai 100.0 2.7E-30 9.1E-35 267.4 41.7 296 294-614 102-432 (433)
116 2w18_A PALB2, fancn, partner a 100.0 9.7E-31 3.3E-35 250.3 34.5 291 232-613 42-356 (356)
117 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.2E-31 1.8E-35 274.0 35.6 276 187-483 4-391 (450)
118 1l0q_A Surface layer protein; 100.0 1E-29 3.5E-34 259.2 43.8 330 200-559 3-365 (391)
119 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-31 3.6E-36 268.7 27.2 274 193-529 42-333 (343)
120 2xyi_A Probable histone-bindin 100.0 4.3E-31 1.5E-35 272.8 31.3 260 346-614 122-410 (430)
121 2xyi_A Probable histone-bindin 100.0 1.6E-30 5.3E-35 268.6 35.0 282 187-484 45-411 (430)
122 1l0q_A Surface layer protein; 100.0 2.5E-29 8.6E-34 256.3 42.4 304 243-615 5-343 (391)
123 3bws_A Protein LP49; two-domai 100.0 1.5E-29 5.1E-34 261.8 40.2 333 186-572 59-432 (433)
124 3lrv_A PRE-mRNA-splicing facto 100.0 6.4E-31 2.2E-35 263.0 28.8 273 239-570 46-331 (343)
125 3jro_A Fusion protein of prote 100.0 2.4E-31 8E-36 293.7 28.1 252 346-614 3-285 (753)
126 4gq1_A NUP37; propeller, trans 100.0 5.2E-32 1.8E-36 276.0 19.2 251 319-612 98-387 (393)
127 2w18_A PALB2, fancn, partner a 100.0 2E-29 7E-34 241.2 32.7 294 177-570 25-355 (356)
128 1nir_A Nitrite reductase; hemo 100.0 1.3E-28 4.5E-33 259.9 37.9 330 194-582 144-524 (543)
129 4gq1_A NUP37; propeller, trans 100.0 9E-30 3.1E-34 259.4 21.4 286 182-482 84-388 (393)
130 1nir_A Nitrite reductase; hemo 100.0 9.5E-28 3.3E-32 253.4 37.1 320 237-615 145-515 (543)
131 2ecf_A Dipeptidyl peptidase IV 100.0 6.4E-27 2.2E-31 259.3 33.5 319 187-529 36-459 (741)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.6E-27 1.2E-31 241.5 29.2 276 186-483 61-387 (415)
133 2hqs_A Protein TOLB; TOLB, PAL 100.0 2.3E-26 7.8E-31 235.6 34.2 297 271-595 63-409 (415)
134 2ecf_A Dipeptidyl peptidase IV 100.0 1.2E-26 4.2E-31 257.0 33.4 322 270-614 36-459 (741)
135 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-25 4.6E-30 247.1 31.1 312 190-574 28-437 (706)
136 1xfd_A DIP, dipeptidyl aminope 99.9 2E-26 6.7E-31 254.6 22.6 345 231-603 18-429 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 1.3E-24 4.5E-29 239.2 34.4 321 273-615 28-436 (706)
138 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-25 4E-30 248.4 24.6 356 189-576 18-447 (723)
139 3u4y_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 208.4 31.7 279 318-615 5-305 (331)
140 3vgz_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 200.4 38.1 268 186-474 39-335 (353)
141 2ojh_A Uncharacterized protein 99.9 4.6E-24 1.6E-28 207.8 22.6 255 328-605 18-293 (297)
142 1ri6_A Putative isomerase YBHE 99.9 4.7E-23 1.6E-27 205.5 30.1 273 325-613 8-307 (343)
143 3u4y_A Uncharacterized protein 99.9 1.6E-22 5.5E-27 200.8 33.3 273 193-484 3-305 (331)
144 3vgz_A Uncharacterized protein 99.9 4.1E-22 1.4E-26 199.7 36.6 272 312-604 42-334 (353)
145 1ri6_A Putative isomerase YBHE 99.9 2.4E-22 8.2E-27 200.4 34.6 295 285-596 7-335 (343)
146 1pby_B Quinohemoprotein amine 99.9 8.4E-23 2.9E-27 203.1 29.9 266 323-615 2-311 (337)
147 1pby_B Quinohemoprotein amine 99.9 5.8E-22 2E-26 197.0 31.6 274 284-584 2-322 (337)
148 2ojh_A Uncharacterized protein 99.9 1.9E-22 6.4E-27 196.4 26.3 253 204-474 17-293 (297)
149 3hfq_A Uncharacterized protein 99.9 2.6E-21 8.8E-26 193.5 33.9 268 331-613 15-316 (347)
150 1z68_A Fibroblast activation p 99.9 4.7E-23 1.6E-27 227.3 23.0 330 234-579 20-450 (719)
151 3o4h_A Acylamino-acid-releasin 99.9 1.5E-22 5.3E-27 217.4 25.4 268 187-483 21-315 (582)
152 3hfq_A Uncharacterized protein 99.9 9.6E-20 3.3E-24 182.1 35.9 269 201-482 4-316 (347)
153 1z68_A Fibroblast activation p 99.9 2.1E-21 7.2E-26 214.1 24.5 326 275-615 20-444 (719)
154 4a5s_A Dipeptidyl peptidase 4 99.9 1.7E-20 5.6E-25 207.1 30.7 360 188-579 17-456 (740)
155 1jmx_B Amine dehydrogenase; ox 99.9 1.7E-20 5.7E-25 187.5 27.4 276 316-615 5-326 (349)
156 1jmx_B Amine dehydrogenase; ox 99.9 5.8E-20 2E-24 183.6 30.7 264 191-486 3-328 (349)
157 3o4h_A Acylamino-acid-releasin 99.9 8.2E-21 2.8E-25 203.9 25.9 267 314-613 25-314 (582)
158 3scy_A Hypothetical bacterial 99.9 2.1E-19 7.3E-24 180.6 32.8 276 323-613 14-336 (361)
159 3scy_A Hypothetical bacterial 99.9 3.9E-18 1.3E-22 171.4 41.8 304 284-592 14-360 (361)
160 4a5s_A Dipeptidyl peptidase 4 99.9 1.5E-19 5E-24 199.5 29.2 355 230-613 17-448 (740)
161 3pe7_A Oligogalacturonate lyas 99.9 2.8E-19 9.7E-24 181.6 28.3 296 253-613 13-381 (388)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.7E-19 1.9E-23 177.7 29.6 273 325-614 5-341 (365)
163 3pe7_A Oligogalacturonate lyas 99.8 2.3E-19 7.9E-24 182.2 26.5 286 180-481 23-380 (388)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 8.7E-20 3E-24 187.3 22.3 214 352-615 36-279 (434)
165 2oiz_A Aromatic amine dehydrog 99.8 2.4E-18 8.2E-23 172.3 30.6 293 281-596 13-360 (361)
166 2oit_A Nucleoporin 214KDA; NH2 99.8 2.2E-18 7.5E-23 176.8 27.9 257 351-614 91-405 (434)
167 2oiz_A Aromatic amine dehydrog 99.8 8.1E-18 2.8E-22 168.4 31.4 267 197-484 13-335 (361)
168 3c5m_A Oligogalacturonate lyas 99.8 9E-19 3.1E-23 178.2 19.7 312 253-613 13-381 (396)
169 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.8E-17 2E-21 163.0 32.4 269 243-530 5-342 (365)
170 3azo_A Aminopeptidase; POP fam 99.8 3.6E-18 1.2E-22 186.4 25.4 285 181-484 17-370 (662)
171 3c5m_A Oligogalacturonate lyas 99.8 5.8E-19 2E-23 179.7 17.5 317 212-575 13-387 (396)
172 1qks_A Cytochrome CD1 nitrite 99.8 9.2E-15 3.2E-19 153.7 44.5 323 196-538 164-546 (567)
173 3azo_A Aminopeptidase; POP fam 99.8 1.5E-17 5E-22 181.6 23.4 302 265-582 18-379 (662)
174 1q7f_A NHL, brain tumor CG1071 99.8 4.8E-16 1.6E-20 150.5 31.6 240 350-614 27-280 (286)
175 1qks_A Cytochrome CD1 nitrite 99.8 1.4E-14 4.7E-19 152.3 43.3 318 243-581 170-547 (567)
176 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-15 4.3E-20 147.6 31.8 236 184-442 26-281 (286)
177 3fvz_A Peptidyl-glycine alpha- 99.8 4.3E-16 1.5E-20 154.0 28.3 244 352-614 23-322 (329)
178 3fvz_A Peptidyl-glycine alpha- 99.8 5.9E-16 2E-20 153.1 28.9 237 186-440 22-321 (329)
179 2gop_A Trilobed protease; beta 99.7 8.9E-16 3E-20 153.1 28.7 239 331-612 42-329 (347)
180 2dg1_A DRP35, lactonase; beta 99.7 1.2E-15 4E-20 151.4 28.0 273 188-474 6-301 (333)
181 2dg1_A DRP35, lactonase; beta 99.7 2.2E-15 7.5E-20 149.3 28.7 264 315-604 10-300 (333)
182 2gop_A Trilobed protease; beta 99.7 4.8E-15 1.7E-19 147.7 30.1 256 188-482 15-330 (347)
183 2xdw_A Prolyl endopeptidase; a 99.7 3.3E-15 1.1E-19 163.9 29.9 244 351-615 123-415 (710)
184 2z2n_A Virginiamycin B lyase; 99.7 1.6E-13 5.6E-18 133.3 37.7 275 315-615 19-296 (299)
185 2z2n_A Virginiamycin B lyase; 99.7 3E-13 1E-17 131.4 38.3 277 183-483 10-295 (299)
186 3e5z_A Putative gluconolactona 99.7 7.3E-15 2.5E-19 142.9 26.7 243 343-614 18-286 (296)
187 3no2_A Uncharacterized protein 99.7 3.3E-14 1.1E-18 136.0 28.9 231 198-450 4-261 (276)
188 2xdw_A Prolyl endopeptidase; a 99.7 1.6E-14 5.6E-19 158.4 29.5 241 185-443 122-416 (710)
189 3e5z_A Putative gluconolactona 99.7 5.3E-14 1.8E-18 136.8 29.5 241 219-482 17-285 (296)
190 2bkl_A Prolyl endopeptidase; m 99.7 4.2E-15 1.4E-19 162.6 22.0 192 269-481 119-347 (695)
191 1rwi_B Serine/threonine-protei 99.7 2.5E-14 8.4E-19 137.0 24.7 239 354-615 25-265 (270)
192 3dsm_A Uncharacterized protein 99.6 1.7E-13 5.9E-18 135.1 30.5 273 292-591 16-319 (328)
193 3dsm_A Uncharacterized protein 99.6 4.6E-14 1.6E-18 139.2 25.7 253 207-482 15-301 (328)
194 2mad_H Methylamine dehydrogena 99.6 1.5E-12 5.1E-17 130.2 36.3 272 319-615 29-351 (373)
195 3sjl_D Methylamine dehydrogena 99.6 2.4E-13 8.1E-18 134.0 29.5 292 280-594 41-384 (386)
196 1rwi_B Serine/threonine-protei 99.6 6.7E-14 2.3E-18 134.0 25.2 238 189-443 25-266 (270)
197 3sjl_D Methylamine dehydrogena 99.6 5.2E-13 1.8E-17 131.5 31.4 274 193-485 38-365 (386)
198 2mad_H Methylamine dehydrogena 99.6 3.4E-12 1.1E-16 127.6 37.8 283 194-487 27-354 (373)
199 2bkl_A Prolyl endopeptidase; m 99.6 2.5E-14 8.4E-19 156.5 23.2 240 351-615 119-398 (695)
200 3no2_A Uncharacterized protein 99.6 3.3E-13 1.1E-17 129.1 27.6 210 239-471 4-231 (276)
201 2qc5_A Streptogramin B lactona 99.6 3.1E-12 1.1E-16 124.2 35.2 272 315-612 24-298 (300)
202 2qc5_A Streptogramin B lactona 99.6 5E-12 1.7E-16 122.7 36.3 273 185-481 17-298 (300)
203 1yr2_A Prolyl oligopeptidase; 99.6 2.4E-13 8.2E-18 149.8 27.1 240 353-615 163-442 (741)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.3E-12 7.8E-17 126.2 29.4 240 183-441 13-299 (314)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.2E-12 1.4E-16 124.3 29.3 239 352-614 17-299 (314)
206 3c75_H MADH, methylamine dehyd 99.5 2.4E-12 8.2E-17 129.2 27.4 271 320-615 82-403 (426)
207 1yr2_A Prolyl oligopeptidase; 99.5 1E-12 3.5E-17 144.8 26.0 271 196-485 115-443 (741)
208 4a2l_A BT_4663, two-component 99.5 2.6E-09 8.9E-14 118.6 52.9 390 190-614 175-614 (795)
209 3c75_H MADH, methylamine dehyd 99.5 7E-12 2.4E-16 125.9 28.4 282 197-487 82-406 (426)
210 4a2l_A BT_4663, two-component 99.5 7.4E-10 2.5E-14 123.0 46.8 396 190-614 133-571 (795)
211 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4.3E-11 1.5E-15 120.4 33.7 299 198-526 52-375 (376)
212 3hrp_A Uncharacterized protein 99.5 1.3E-11 4.3E-16 125.3 29.2 238 353-612 131-408 (409)
213 3g4e_A Regucalcin; six bladed 99.5 9.2E-11 3.1E-15 113.8 33.8 227 352-602 12-260 (297)
214 2qe8_A Uncharacterized protein 99.5 2.8E-12 9.7E-17 127.3 21.0 272 188-479 17-317 (343)
215 1xip_A Nucleoporin NUP159; bet 99.5 1.5E-12 5.2E-17 128.8 18.4 173 189-371 39-232 (388)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.5 2.3E-10 7.8E-15 115.2 34.2 298 283-611 53-375 (376)
217 3hrp_A Uncharacterized protein 99.4 8E-11 2.7E-15 119.4 29.5 236 312-570 132-408 (409)
218 1yiq_A Quinohemoprotein alcoho 99.4 6.7E-11 2.3E-15 128.1 28.9 318 283-602 70-537 (689)
219 3v9f_A Two-component system se 99.4 5.3E-08 1.8E-12 107.8 52.7 410 188-614 66-524 (781)
220 1kb0_A Quinohemoprotein alcoho 99.4 1.4E-10 4.9E-15 125.2 30.8 309 199-515 77-536 (677)
221 3hxj_A Pyrrolo-quinoline quino 99.4 2.9E-12 9.9E-17 126.5 16.0 298 234-614 24-324 (330)
222 3v9f_A Two-component system se 99.4 3E-08 1E-12 109.8 49.8 405 188-615 115-569 (781)
223 3g4e_A Regucalcin; six bladed 99.4 5.6E-10 1.9E-14 108.2 31.7 234 226-473 9-262 (297)
224 1kb0_A Quinohemoprotein alcoho 99.4 8.3E-11 2.8E-15 127.1 27.5 296 283-600 77-536 (677)
225 1yiq_A Quinohemoprotein alcoho 99.4 3E-10 1E-14 123.0 31.4 298 240-561 70-538 (689)
226 2qe8_A Uncharacterized protein 99.4 1.3E-11 4.4E-16 122.5 18.9 264 309-607 15-314 (343)
227 3dr2_A Exported gluconolactona 99.4 2.1E-10 7.1E-15 111.7 26.4 236 344-608 36-301 (305)
228 3iuj_A Prolyl endopeptidase; h 99.4 2.9E-11 9.9E-16 131.9 22.0 238 185-444 126-408 (693)
229 1xip_A Nucleoporin NUP159; bet 99.4 1.5E-11 5.2E-16 121.7 17.8 182 354-601 39-231 (388)
230 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-09 3.8E-14 107.6 30.9 221 188-431 49-292 (326)
231 2ghs_A AGR_C_1268P; regucalcin 99.4 1.6E-09 5.6E-14 106.4 32.0 221 355-603 51-291 (326)
232 3iuj_A Prolyl endopeptidase; h 99.3 5.8E-11 2E-15 129.5 22.5 240 351-615 127-406 (693)
233 1mda_H Methylamine dehydrogena 99.3 6.1E-11 2.1E-15 117.1 20.4 268 294-592 47-365 (368)
234 3dr2_A Exported gluconolactona 99.3 7.7E-10 2.6E-14 107.7 27.9 231 222-475 37-299 (305)
235 3hxj_A Pyrrolo-quinoline quino 99.3 7.5E-11 2.6E-15 116.2 19.5 299 191-529 23-324 (330)
236 1mda_H Methylamine dehydrogena 99.3 2.7E-10 9.2E-15 112.5 21.0 250 210-486 47-349 (368)
237 2hz6_A Endoplasmic reticulum t 99.2 5.1E-12 1.7E-16 126.5 4.2 256 198-482 8-278 (369)
238 2hz6_A Endoplasmic reticulum t 99.2 2.5E-11 8.5E-16 121.5 6.5 256 240-528 9-278 (369)
239 2ece_A 462AA long hypothetical 99.1 5E-08 1.7E-12 96.6 29.1 224 320-560 93-399 (462)
240 1kv9_A Type II quinohemoprotei 99.1 6.9E-08 2.3E-12 104.2 32.0 297 240-560 66-520 (668)
241 2ad6_A Methanol dehydrogenase 99.1 6.4E-08 2.2E-12 102.2 30.7 289 199-493 62-504 (571)
242 2ad6_A Methanol dehydrogenase 99.1 9.5E-08 3.2E-12 100.9 31.0 330 240-600 62-523 (571)
243 2ece_A 462AA long hypothetical 99.1 1.6E-07 5.6E-12 93.0 29.1 227 239-471 93-399 (462)
244 1kv9_A Type II quinohemoprotei 99.1 8.5E-08 2.9E-12 103.5 29.8 289 199-492 66-497 (668)
245 1npe_A Nidogen, entactin; glyc 99.1 5.7E-07 1.9E-11 85.3 32.1 246 200-465 2-263 (267)
246 1w6s_A Methanol dehydrogenase 99.0 4.1E-07 1.4E-11 95.9 32.4 289 199-492 62-512 (599)
247 1npe_A Nidogen, entactin; glyc 99.0 7.2E-07 2.5E-11 84.6 31.3 248 324-596 3-263 (267)
248 1fwx_A Nitrous oxide reductase 99.0 2.9E-08 9.8E-13 101.9 21.6 219 363-603 100-407 (595)
249 1w6s_A Methanol dehydrogenase 99.0 9.1E-07 3.1E-11 93.3 32.5 299 240-561 62-536 (599)
250 3s94_A LRP-6, low-density lipo 99.0 7.6E-05 2.6E-09 79.3 46.6 366 187-573 83-511 (619)
251 1flg_A Protein (quinoprotein e 98.9 1.7E-06 5.8E-11 91.4 32.9 297 240-560 68-548 (582)
252 1fwx_A Nitrous oxide reductase 98.9 9.1E-08 3.1E-12 98.2 22.0 265 202-472 18-407 (595)
253 1flg_A Protein (quinoprotein e 98.9 1.1E-06 3.8E-11 92.8 31.0 310 199-514 68-544 (582)
254 2iwa_A Glutamine cyclotransfer 98.9 3.5E-07 1.2E-11 85.2 23.1 190 190-383 23-237 (266)
255 3s94_A LRP-6, low-density lipo 98.9 0.00011 3.7E-09 78.2 43.0 373 208-601 17-452 (619)
256 2p4o_A Hypothetical protein; p 98.8 5.1E-06 1.8E-10 80.4 30.2 239 343-604 23-278 (306)
257 2fp8_A Strictosidine synthase; 98.8 3.1E-06 1.1E-10 82.7 28.8 234 187-441 18-313 (322)
258 2fp8_A Strictosidine synthase; 98.8 2E-06 6.9E-11 84.0 27.2 233 354-615 20-314 (322)
259 2iwa_A Glutamine cyclotransfer 98.8 1.1E-06 3.7E-11 81.8 23.3 200 221-441 11-237 (266)
260 3nol_A Glutamine cyclotransfer 98.8 8.1E-07 2.8E-11 81.6 20.7 190 177-373 31-245 (262)
261 3nol_A Glutamine cyclotransfer 98.8 1.4E-06 4.7E-11 80.0 21.3 189 221-431 33-245 (262)
262 3nok_A Glutaminyl cyclase; bet 98.7 2.9E-06 1E-10 77.9 21.5 185 178-371 44-253 (268)
263 4a0p_A LRP6, LRP-6, low-densit 98.7 0.00076 2.6E-08 71.7 54.0 421 187-613 36-507 (628)
264 3nok_A Glutaminyl cyclase; bet 98.7 1.8E-06 6.2E-11 79.2 19.1 188 221-430 45-254 (268)
265 2p4o_A Hypothetical protein; p 98.7 7.1E-05 2.4E-09 72.3 31.3 227 313-563 34-279 (306)
266 3mbr_X Glutamine cyclotransfer 98.6 6.5E-06 2.2E-10 74.9 21.7 189 221-430 11-223 (243)
267 3mbr_X Glutamine cyclotransfer 98.6 1.5E-05 5.3E-10 72.5 24.1 187 179-372 11-223 (243)
268 3ei3_A DNA damage-binding prot 98.6 0.0018 6E-08 73.7 48.0 378 210-612 493-953 (1158)
269 3v64_C Agrin; beta propeller, 98.6 7.7E-05 2.6E-09 73.4 30.2 243 187-449 33-283 (349)
270 4a0p_A LRP6, LRP-6, low-densit 98.6 0.0013 4.4E-08 69.9 48.8 376 200-600 7-449 (628)
271 1ijq_A LDL receptor, low-densi 98.5 0.00046 1.6E-08 66.8 33.4 237 325-580 4-246 (316)
272 3v65_B Low-density lipoprotein 98.5 0.00015 5E-09 72.5 29.8 242 189-450 78-327 (386)
273 1k3i_A Galactose oxidase precu 98.5 3.2E-06 1.1E-10 91.3 18.0 264 192-472 190-530 (656)
274 3p5b_L Low density lipoprotein 98.5 0.00077 2.6E-08 67.6 34.2 249 324-591 85-339 (400)
275 3tc9_A Hypothetical hydrolase; 98.5 9.1E-05 3.1E-09 75.1 27.5 239 313-571 139-429 (430)
276 1ijq_A LDL receptor, low-densi 98.5 0.00076 2.6E-08 65.2 32.5 222 209-449 10-246 (316)
277 3qqz_A Putative uncharacterize 98.4 0.00013 4.5E-09 67.4 24.9 205 405-612 21-251 (255)
278 3v64_C Agrin; beta propeller, 98.4 0.0006 2.1E-08 67.0 30.9 231 233-483 37-275 (349)
279 1k3i_A Galactose oxidase precu 98.4 9.5E-06 3.2E-10 87.6 19.3 272 315-603 190-530 (656)
280 3qqz_A Putative uncharacterize 98.4 0.00075 2.6E-08 62.3 28.9 201 264-480 20-250 (255)
281 3p5b_L Low density lipoprotein 98.4 0.0024 8.2E-08 64.0 35.1 241 200-459 84-338 (400)
282 3v65_B Low-density lipoprotein 98.4 0.00087 3E-08 66.9 31.6 225 242-484 88-319 (386)
283 3ei3_A DNA damage-binding prot 98.3 0.0091 3.1E-07 67.9 50.0 398 188-614 514-999 (1158)
284 4hw6_A Hypothetical protein, I 98.3 0.00034 1.2E-08 70.9 27.7 238 313-571 141-432 (433)
285 3ott_A Two-component system se 98.3 0.0078 2.7E-07 66.0 48.2 387 187-611 21-445 (758)
286 3tc9_A Hypothetical hydrolase; 98.3 0.00016 5.4E-09 73.3 24.3 238 354-613 138-429 (430)
287 4hw6_A Hypothetical protein, I 98.3 0.0003 1E-08 71.3 25.9 237 354-613 140-432 (433)
288 2xe4_A Oligopeptidase B; hydro 98.3 5.1E-05 1.7E-09 83.1 21.2 188 189-381 175-396 (751)
289 2xbg_A YCF48-like protein; pho 98.3 0.0024 8.1E-08 62.1 31.0 268 270-570 35-320 (327)
290 3ott_A Two-component system se 98.2 0.012 4.1E-07 64.5 52.2 401 188-614 63-502 (758)
291 2xzh_A Clathrin heavy chain 1; 98.2 0.0039 1.3E-07 58.6 32.5 261 293-574 49-334 (365)
292 3sov_A LRP-6, low-density lipo 98.2 0.0012 4E-08 63.9 26.9 225 208-449 12-246 (318)
293 3sov_A LRP-6, low-density lipo 98.2 0.0018 6E-08 62.6 27.8 225 243-484 6-239 (318)
294 2xbg_A YCF48-like protein; pho 98.1 0.0076 2.6E-07 58.5 34.3 270 229-527 35-320 (327)
295 3kya_A Putative phosphatase; s 98.1 0.0015 5E-08 66.4 26.4 251 313-577 141-480 (496)
296 3amr_A 3-phytase; beta-propell 98.0 0.0026 8.7E-08 61.1 24.9 197 321-537 39-271 (355)
297 1bpo_A Protein (clathrin); cla 98.0 0.013 4.4E-07 57.4 32.9 261 293-574 48-333 (494)
298 2xe4_A Oligopeptidase B; hydro 98.0 0.00012 4E-09 80.3 17.8 193 412-611 175-395 (751)
299 3m0c_C LDL receptor, low-densi 98.0 0.0098 3.3E-07 64.7 32.1 232 330-580 402-640 (791)
300 3kya_A Putative phosphatase; s 98.0 0.0072 2.5E-07 61.4 29.0 250 231-484 140-476 (496)
301 3amr_A 3-phytase; beta-propell 98.0 0.0018 6E-08 62.2 22.9 189 421-613 39-262 (355)
302 2ism_A Putative oxidoreductase 97.9 0.012 4.3E-07 57.5 28.4 236 229-471 30-333 (352)
303 2xzh_A Clathrin heavy chain 1; 97.9 0.016 5.5E-07 54.5 31.6 259 209-483 49-332 (365)
304 2p9w_A MAL S 1 allergenic prot 97.9 0.0046 1.6E-07 58.8 23.5 199 409-609 11-260 (334)
305 1bpo_A Protein (clathrin); cla 97.9 0.023 7.9E-07 55.6 32.0 260 209-483 48-331 (494)
306 2p9w_A MAL S 1 allergenic prot 97.9 0.0045 1.6E-07 58.8 23.3 204 352-572 12-265 (334)
307 3m0c_C LDL receptor, low-densi 97.9 0.02 6.9E-07 62.3 31.6 224 208-449 403-640 (791)
308 1n7d_A LDL receptor, low-densi 97.7 0.00013 4.6E-09 78.7 10.8 242 331-591 385-633 (699)
309 2ism_A Putative oxidoreductase 97.7 0.037 1.3E-06 54.2 27.1 228 186-429 29-333 (352)
310 1n7d_A LDL receptor, low-densi 97.6 0.00018 6.2E-09 77.7 10.0 234 208-459 385-632 (699)
311 3a9g_A Putative uncharacterize 97.6 0.07 2.4E-06 52.2 32.7 239 229-471 28-330 (354)
312 3sre_A PON1, serum paraoxonase 97.4 0.073 2.5E-06 51.7 24.7 205 355-580 52-308 (355)
313 2vpj_A Kelch-like protein 12; 97.3 0.02 6.9E-07 54.6 19.7 146 421-574 112-280 (301)
314 2vpj_A Kelch-like protein 12; 97.3 0.015 5.2E-07 55.4 18.4 186 420-615 61-279 (301)
315 3a9g_A Putative uncharacterize 97.3 0.16 5.6E-06 49.5 30.3 234 270-517 28-330 (354)
316 2be1_A Serine/threonine-protei 97.2 0.0057 1.9E-07 58.9 14.2 109 241-350 11-139 (339)
317 2xn4_A Kelch-like protein 2; s 97.2 0.029 9.9E-07 53.5 19.4 185 421-615 61-277 (302)
318 2g8s_A Glucose/sorbosone dehyd 97.1 0.21 7.3E-06 48.6 25.7 244 353-613 18-351 (353)
319 2xn4_A Kelch-like protein 2; s 97.1 0.044 1.5E-06 52.2 19.8 146 421-574 108-278 (302)
320 1xi4_A Clathrin heavy chain; a 97.0 0.026 8.9E-07 63.7 19.1 219 293-531 48-291 (1630)
321 3ii7_A Kelch-like protein 7; p 97.0 0.063 2.2E-06 51.2 20.3 225 324-574 14-274 (306)
322 3ii7_A Kelch-like protein 7; p 97.0 0.052 1.8E-06 51.8 19.7 186 420-615 54-273 (306)
323 3sre_A PON1, serum paraoxonase 97.0 0.17 5.7E-06 49.1 22.6 187 411-604 50-287 (355)
324 2g8s_A Glucose/sorbosone dehyd 96.9 0.35 1.2E-05 47.1 28.8 236 230-470 18-340 (353)
325 1xi4_A Clathrin heavy chain; a 96.7 0.07 2.4E-06 60.3 19.1 251 332-607 48-324 (1630)
326 1zgk_A Kelch-like ECH-associat 96.7 0.067 2.3E-06 51.1 17.3 185 421-615 70-288 (308)
327 3pbp_A Nucleoporin NUP82; beta 96.7 0.21 7.3E-06 48.9 20.1 147 361-525 29-208 (452)
328 4asc_A Kelch repeat and BTB do 96.7 0.31 1.1E-05 46.6 21.7 147 421-574 98-279 (315)
329 1zgk_A Kelch-like ECH-associat 96.5 0.091 3.1E-06 50.2 17.0 146 421-574 121-289 (308)
330 4asc_A Kelch repeat and BTB do 96.5 0.16 5.5E-06 48.6 18.5 177 250-445 13-225 (315)
331 3das_A Putative oxidoreductase 96.4 0.7 2.4E-05 44.5 30.9 245 224-471 26-326 (347)
332 3sbq_A Nitrous-oxide reductase 96.4 1 3.6E-05 45.7 27.4 98 503-602 327-453 (638)
333 3pbp_A Nucleoporin NUP82; beta 96.4 0.24 8.1E-06 48.6 18.2 148 419-568 29-208 (452)
334 3s25_A Hypothetical 7-bladed b 96.3 0.78 2.7E-05 43.4 26.0 209 283-530 25-256 (302)
335 1cru_A Protein (soluble quinop 96.2 0.63 2.2E-05 47.0 21.8 109 452-560 26-162 (454)
336 2be1_A Serine/threonine-protei 96.2 0.088 3E-06 50.6 14.4 181 199-382 10-230 (339)
337 3s25_A Hypothetical 7-bladed b 96.1 0.91 3.1E-05 43.0 21.0 162 416-601 58-240 (302)
338 2uvk_A YJHT; unknown function, 96.1 0.12 4.3E-06 50.4 15.5 145 432-579 168-349 (357)
339 2woz_A Kelch repeat and BTB do 96.0 0.43 1.5E-05 45.6 18.5 189 417-615 52-288 (318)
340 2woz_A Kelch repeat and BTB do 95.8 0.41 1.4E-05 45.7 17.4 128 251-382 25-183 (318)
341 1tl2_A L10, protein (tachylect 95.6 0.37 1.3E-05 42.6 14.3 151 353-521 41-202 (236)
342 1tl2_A L10, protein (tachylect 95.5 0.51 1.7E-05 41.8 14.8 176 282-475 3-202 (236)
343 3das_A Putative oxidoreductase 95.3 2.2 7.4E-05 41.1 31.3 233 351-602 30-326 (347)
344 3qhy_B Beta-lactamase inhibito 95.0 1.2 4.2E-05 41.6 17.1 239 189-463 25-264 (282)
345 2uvk_A YJHT; unknown function, 94.9 0.73 2.5E-05 44.8 16.1 189 421-615 65-343 (357)
346 1cru_A Protein (soluble quinop 94.5 4.6 0.00016 40.6 32.3 102 229-330 26-163 (454)
347 2zwa_A Leucine carboxyl methyl 94.1 2 6.8E-05 46.1 18.5 152 421-575 451-638 (695)
348 3qhy_B Beta-lactamase inhibito 92.8 2 6.9E-05 40.1 14.0 221 231-483 25-246 (282)
349 2zwa_A Leucine carboxyl methyl 91.4 5.3 0.00018 42.8 17.0 192 420-615 396-636 (695)
350 3sbq_A Nitrous-oxide reductase 88.4 24 0.00082 36.0 24.7 266 202-471 73-453 (638)
351 3b7f_A Glycosyl hydrolase, BNR 86.9 24 0.00082 34.4 26.5 171 200-374 23-254 (394)
352 2wg3_C Hedgehog-interacting pr 86.6 28 0.00096 34.9 28.8 116 353-474 14-160 (463)
353 3b7f_A Glycosyl hydrolase, BNR 86.1 26 0.0009 34.1 29.5 300 240-550 22-391 (394)
354 3uc1_A DNA gyrase subunit A; D 80.0 41 0.0014 31.8 23.9 244 353-605 42-321 (327)
355 4hvt_A Ritya.17583.B, post-pro 78.2 75 0.0026 33.8 21.4 98 472-571 318-429 (711)
356 3l6v_A GYRA, DNA gyrase subuni 76.6 56 0.0019 31.5 26.8 238 361-610 4-312 (370)
357 4hvt_A Ritya.17583.B, post-pro 76.3 85 0.0029 33.4 24.7 192 189-382 130-380 (711)
358 1suu_A DNA gyrase subunit A; t 75.6 53 0.0018 30.8 27.0 233 362-607 6-276 (312)
359 1suu_A DNA gyrase subunit A; t 74.6 57 0.0019 30.6 25.6 198 320-528 6-230 (312)
360 1wp5_A Topoisomerase IV; broke 74.2 59 0.002 30.6 25.2 235 362-612 3-275 (323)
361 3no0_A DNA gyrase subunit A; D 73.2 57 0.0019 29.9 21.2 199 411-612 24-244 (276)
362 1zi0_A DNA gyrase subunit A; b 73.2 61 0.0021 30.3 26.9 241 362-612 1-275 (307)
363 4gq2_M Nucleoporin NUP120; bet 71.4 1.3E+02 0.0044 33.4 21.1 38 412-449 237-274 (950)
364 1zi0_A DNA gyrase subunit A; b 70.6 70 0.0024 29.9 24.9 241 321-571 2-276 (307)
365 2wg3_C Hedgehog-interacting pr 69.7 94 0.0032 31.0 29.0 244 271-517 14-354 (463)
366 3uc1_A DNA gyrase subunit A; D 67.1 86 0.0029 29.6 22.3 239 364-612 3-277 (327)
367 4fhn_B Nucleoporin NUP120; pro 62.7 70 0.0024 36.4 13.6 38 412-449 239-276 (1139)
368 4gq2_M Nucleoporin NUP120; bet 58.5 2.2E+02 0.0076 31.5 22.2 38 542-579 236-273 (950)
369 3q6k_A 43.2 kDa salivary prote 57.9 1.4E+02 0.0047 28.9 23.0 175 186-382 85-305 (381)
370 3zwu_A Alkaline phosphatase PH 55.0 30 0.001 35.8 8.0 59 543-601 477-548 (592)
371 3f7f_A Nucleoporin NUP120; nuc 54.4 21 0.00073 37.6 6.8 37 543-581 223-259 (729)
372 1wp5_A Topoisomerase IV; broke 53.1 1.5E+02 0.0051 27.8 24.9 242 320-571 3-276 (323)
373 3zwu_A Alkaline phosphatase PH 52.1 2.2E+02 0.0075 29.4 14.3 59 500-559 477-548 (592)
374 3no0_A DNA gyrase subunit A; D 50.9 1.5E+02 0.005 27.1 19.8 201 353-571 24-245 (276)
375 3kci_A Probable E3 ubiquitin-p 49.6 1.9E+02 0.0064 27.9 32.2 280 283-572 10-345 (389)
376 4a9v_A PHOX; hydrolase, beta-p 49.2 60 0.0021 33.3 8.9 61 542-602 476-549 (592)
377 4fhn_B Nucleoporin NUP120; pro 46.5 45 0.0015 38.0 8.5 37 543-579 239-275 (1139)
378 3kci_A Probable E3 ubiquitin-p 45.3 2.2E+02 0.0074 27.4 32.7 279 323-613 11-344 (389)
379 3f7f_A Nucleoporin NUP120; nuc 45.1 35 0.0012 36.0 6.6 38 188-227 222-259 (729)
380 3q6k_A 43.2 kDa salivary prote 44.7 2.2E+02 0.0076 27.4 23.0 185 333-559 124-341 (381)
381 3mvd_K Regulator of chromosome 43.1 2.4E+02 0.0083 27.4 34.5 204 271-482 75-321 (423)
382 4d9s_A UVB-resistance protein 42.3 2.5E+02 0.0084 27.2 33.3 281 188-483 16-357 (406)
383 3mez_B Mannose-specific lectin 41.8 1.1E+02 0.0039 23.2 8.7 46 545-600 59-104 (113)
384 4a9v_A PHOX; hydrolase, beta-p 36.3 1.7E+02 0.0057 30.1 9.7 62 498-560 475-549 (592)
385 3l6v_A GYRA, DNA gyrase subuni 32.1 3.4E+02 0.012 25.9 27.4 153 320-482 5-179 (370)
386 3mvd_K Regulator of chromosome 32.1 3.6E+02 0.012 26.1 32.3 241 316-572 78-374 (423)
387 2hgo_A CASSIICOLIN; toxin, dis 31.3 15 0.00053 18.8 0.7 16 5-20 1-18 (27)
388 2nvj_A 25MER peptide from vacu 27.2 15 0.00051 19.6 0.2 9 5-13 1-9 (26)
389 3mez_B Mannose-specific lectin 26.9 2.1E+02 0.0071 21.7 9.8 26 233-259 59-84 (113)
390 4d9s_A UVB-resistance protein 21.2 5.5E+02 0.019 24.6 35.5 287 269-572 14-357 (406)
391 3mez_A Mannose-specific lectin 20.9 2E+02 0.0069 21.7 5.8 54 191-256 22-75 (111)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-58 Score=501.07 Aligned_cols=428 Identities=19% Similarity=0.288 Sum_probs=354.9
Q ss_pred hheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEE-EEECC----Cc
Q psy3640 179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYGCL-TGSYD----RT 251 (616)
Q Consensus 179 ~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d----~~ 251 (616)
....+.+|...|++++|+|+|++||+|+.||+|+|||+.++ .....+.+|.++|.+++|+|+++.+ +++.+ +.
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 45778999999999999999999999999999999999754 3456788999999999999999966 55543 35
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEE
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCS 327 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~ 327 (616)
|++|| +++....+.+|...|.+++|+ |++. .|++++.|++|++||..++++...+.+|... ++|+|++++|++
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las 207 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 207 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence 66666 677778889999999999999 5554 7999999999999999999999999888654 589999999999
Q ss_pred EeCCCcEEEEECCCCceeEEee-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc-----
Q psy3640 328 CSMDHTARIFNTNSGQEMHTLK-------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST----- 395 (616)
Q Consensus 328 ~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~----- 395 (616)
++.|+.|++||+.+++....+. +|.+.|.+++|+|++++|++++.|++|++||+..............
T Consensus 208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~ 287 (611)
T 1nr0_A 208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ 287 (611)
T ss_dssp EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence 9999999999999999888884 7999999999999999999999999999999875322111000000
Q ss_pred ----------------------cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe-e---
Q psy3640 396 ----------------------YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL-K--- 449 (616)
Q Consensus 396 ----------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~--- 449 (616)
..........+.+|...|.+++|+|++++|++++.|+.|++||+.++.....+ .
T Consensus 288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 00112245567789999999999999999999999999999999876543321 0
Q ss_pred ------------------------------------------------------------------------------cC
Q psy3640 450 ------------------------------------------------------------------------------NH 451 (616)
Q Consensus 450 ------------------------------------------------------------------------------~~ 451 (616)
.+
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 02
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640 452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531 (616)
Q Consensus 452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 531 (616)
...+.+++|+|+|++|++++.|++|++|++.+..........|. ..|.+++|+|++++|++++.|+.|++|++.+..
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence 24577899999999999999999999999976532211123343 458899999999999999999999999997633
Q ss_pred EEeEE--eeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe-ee-eEeccC-cccEEEEEEeeCCCEEEEeeCCCc
Q psy3640 532 ELLQT--FYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE-CI-QVLKAH-EDDVFSCGFNYNGDTIITASKDNT 606 (616)
Q Consensus 532 ~~~~~--~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~-~~-~~~~~h-~~~V~~l~~s~~~~~l~t~s~Dg~ 606 (616)
+.... ..+|...|.+++|+|||++||+|+.|++|++|+++++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++
T Consensus 525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~ 603 (611)
T 1nr0_A 525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN 603 (611)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence 44433 34499999999999999999999999999999998875 33 677899 89999999999998 999999999
Q ss_pred EEEcccC
Q psy3640 607 CCIWRSM 613 (616)
Q Consensus 607 i~vW~~~ 613 (616)
|++|++.
T Consensus 604 i~lW~~~ 610 (611)
T 1nr0_A 604 IKFWNVP 610 (611)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 9999984
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-58 Score=496.10 Aligned_cols=411 Identities=18% Similarity=0.214 Sum_probs=350.6
Q ss_pred ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCc-
Q psy3640 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGH- 261 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~- 261 (616)
..+.+.+.+++|+|+|++||+++ +++|++|++.+++....+.+|...|++++|+|+++++ +++.|++|+|||+.+++
T Consensus 15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~ 93 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 93 (611)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence 35678899999999999999998 5699999999999999999999999999999999955 89999999999997654
Q ss_pred -eEEEeeCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEeeecee---eEEEcCCCC-EEEEEeCCC
Q psy3640 262 -EICTYRGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYRGHSA---EVTFSPDQS-TFCSCSMDH 332 (616)
Q Consensus 262 -~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~-~l~~~~~dg 332 (616)
....+.+|.+.|.+++|+ |+++.|++++.+ +.|++|| .++....+.+|.. .++|+|++. .+++++.|+
T Consensus 94 ~~~~~~~~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~ 170 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN 170 (611)
T ss_dssp CEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred eeeEeecccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence 456788999999999999 889999998875 4678887 4556666777765 458999987 699999999
Q ss_pred cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe-----
Q psy3640 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT----- 407 (616)
Q Consensus 333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 407 (616)
.|++||..+++....+.+|...|.+++|+|++++|++++.|++|++||+. .......+.
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----------------~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----------------DGTKTGVFEDDSLK 234 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TCCEEEECBCTTSS
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC----------------CCcEeeeecccccc
Confidence 99999999999999999999999999999999999999999999999987 444444442
Q ss_pred --cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE--------------------------------------
Q psy3640 408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-------------------------------------- 447 (616)
Q Consensus 408 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------------------------------- 447 (616)
+|...|.+++|+|++++|++++.|++|++||+++++++..
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 7999999999999999999999999999999998765543
Q ss_pred -----eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc----------------------------
Q psy3640 448 -----LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH---------------------------- 494 (616)
Q Consensus 448 -----~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------------- 494 (616)
+.+|...|.+++|+|++++|++++.|++|++||+.++.........|
T Consensus 315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 394 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence 34688899999999999999999999999999987542211000000
Q ss_pred ---------------------------CC-----------------------CeeeEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640 495 ---------------------------SN-----------------------EVSKVLDIAFDYSGSKLATASSDQTAKL 524 (616)
Q Consensus 495 ---------------------------~~-----------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~v 524 (616)
.. ....+.+++|+|+|++|++|+.|+.|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~l 474 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV 474 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEE
Confidence 00 0123568999999999999999999999
Q ss_pred EecCCceE-EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc-CeeeeE--eccCcccEEEEEEeeCCCEEEE
Q psy3640 525 WTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES-GECIQV--LKAHEDDVFSCGFNYNGDTIIT 600 (616)
Q Consensus 525 wd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~--~~~h~~~V~~l~~s~~~~~l~t 600 (616)
||+.+... .... .+|...|++++|+|+|++|++++.|++|++|++.+ ++++.. +.+|...|.+++|+|||++||+
T Consensus 475 wd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~las 553 (611)
T 1nr0_A 475 YKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 553 (611)
T ss_dssp EEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred EEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEE
Confidence 99977532 2333 78999999999999999999999999999999988 666654 3459999999999999999999
Q ss_pred eeCCCcEEEcccCCC
Q psy3640 601 ASKDNTCCIWRSMNR 615 (616)
Q Consensus 601 ~s~Dg~i~vW~~~~~ 615 (616)
++.|++|++|++.+.
T Consensus 554 gs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 554 GSLDNSVIVWNMNKP 568 (611)
T ss_dssp EETTSCEEEEETTCT
T ss_pred EECCCcEEEEECCCc
Confidence 999999999999753
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.4e-57 Score=487.69 Aligned_cols=405 Identities=38% Similarity=0.616 Sum_probs=340.7
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK 258 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~ 258 (616)
.+.|+||.++|++++|||||++||+|+.|++|+||| .+++.++++.+|...|++++|+|++++| +++.|++|++||+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~- 86 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR- 86 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-
Confidence 467999999999999999999999999999999999 4788999999999999999999999955 8999999999995
Q ss_pred CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC------------------------------------
Q psy3640 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK------------------------------------ 302 (616)
Q Consensus 259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~------------------------------------ 302 (616)
+++.+..+.+|...|.+++|+ |+++++++++.|+.+++|+...
T Consensus 87 ~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 165 (577)
T 2ymu_A 87 NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence 577888888999999999888 6677776666666666554211
Q ss_pred ---------------------------------------------cceeEEeeecee---e-------------------
Q psy3640 303 ---------------------------------------------EECIQTYRGHSA---E------------------- 315 (616)
Q Consensus 303 ---------------------------------------------~~~~~~~~~~~~---~------------------- 315 (616)
++.+..+.+|.. .
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i 245 (577)
T 2ymu_A 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245 (577)
T ss_dssp ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 111111111111 1
Q ss_pred ----------------------EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC
Q psy3640 316 ----------------------VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD 373 (616)
Q Consensus 316 ----------------------v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d 373 (616)
++|+|++..+++++.|+.|++||. +++....+.+|...|.+++|+|+++.+++++.|
T Consensus 246 ~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 246 KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp EEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 234555555555555555555553 244556667899999999999999999999999
Q ss_pred CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q psy3640 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453 (616)
Q Consensus 374 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 453 (616)
+.|++||. .......+.+|...+.+++|+|+++.+++++.||.+++||. +++.+..+..|..
T Consensus 325 ~~i~~w~~-----------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~ 386 (577)
T 2ymu_A 325 KTVKLWNR-----------------NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 386 (577)
T ss_dssp SCEEEEET-----------------TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred CeEEEEeC-----------------CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence 99999997 44556778889999999999999999999999999999995 5678888999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533 (616)
Q Consensus 454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 533 (616)
.|.+++|+|++++|++++.|+.|++|+... .....+..|.. .+.+++|+|++++|++++.|+.|++||... +.
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~ 459 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSS---SVWGVAFSPDDQTIASASDDKTVKLWNRNG--QL 459 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSS---CEEEEEECTTSSEEEEEETTSEEEEEETTS--CE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCC---CeEEEEECCCCCEEEEEcCCCEEEEEECCC--CE
Confidence 999999999999999999999999999754 44555666654 478899999999999999999999999754 56
Q ss_pred eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+..+.+|..+|++++|+|++++|++++.|+.|++||. +++++..+.+|..+|++++|+|++++|++++.||.|++||..
T Consensus 460 ~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 7788899999999999999999999999999999995 789999999999999999999999999999999999999975
Q ss_pred C
Q psy3640 614 N 614 (616)
Q Consensus 614 ~ 614 (616)
.
T Consensus 539 ~ 539 (577)
T 2ymu_A 539 G 539 (577)
T ss_dssp S
T ss_pred C
Confidence 3
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.5e-55 Score=473.21 Aligned_cols=403 Identities=38% Similarity=0.624 Sum_probs=365.6
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEe
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWD 256 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd 256 (616)
........|...|.+++|+|+|++|++++.||.|++||. +++.+..+.+|...|.+++|+|++. +++++.|+.|++||
T Consensus 171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~ 249 (577)
T 2ymu_A 171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 345567789999999999999999999999999999995 6788889999999999999999998 55899999999999
Q ss_pred CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCc
Q psy3640 257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHT 333 (616)
Q Consensus 257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~ 333 (616)
. +++.+..+.+|...|.+++|+ |++..+++++.|+.+++|+. +++....+.+|... ++++|++..+++++.|+.
T Consensus 250 ~-~~~~~~~~~~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 250 R-NGQLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326 (577)
T ss_dssp T-TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred C-CCCEEEEEecCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence 5 567888999999999999999 88999999999999999996 45677777777654 589999999999999999
Q ss_pred EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413 (616)
Q Consensus 334 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 413 (616)
|++||.. +..+..+..|...+.+++|+|+++++++++.|+.+++||. ....+..+.+|...|
T Consensus 327 i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-----------------~~~~~~~~~~~~~~v 388 (577)
T 2ymu_A 327 VKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----------------NGQLLQTLTGHSSSV 388 (577)
T ss_dssp EEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-----------------TCCEEEEEECCSSCE
T ss_pred EEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-----------------CCCEEEEecCCCCCe
Confidence 9999976 4566778889999999999999999999999999999996 556777888999999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG 493 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 493 (616)
.+++|+|+++++++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.+++|+... .....+.+
T Consensus 389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~ 465 (577)
T 2ymu_A 389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTG 465 (577)
T ss_dssp EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcC
Confidence 99999999999999999999999995 5678888999999999999999999999999999999999755 44555666
Q ss_pred cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
|.. .+.+++|+|++++|++++.|+.|++||... +.+..+.+|...|++++|+|+|++|++++.||.|++||. ++
T Consensus 466 ~~~---~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~ 539 (577)
T 2ymu_A 466 HSS---SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG 539 (577)
T ss_dssp CSS---CEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred CCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence 654 478899999999999999999999999754 577788999999999999999999999999999999996 78
Q ss_pred eeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
+++..+.+|.++|++++|+|||++|+|++.|++|++||
T Consensus 540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999999999999999997
No 5
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-51 Score=446.90 Aligned_cols=410 Identities=18% Similarity=0.250 Sum_probs=350.6
Q ss_pred hhheecccCCcc-eEEEEECC--CCCEEEEEECCCcEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEE-E
Q psy3640 178 EKFKMLKSHLLP-LTNITFDK--FGTRCLTGSYDRTCKLWDIKSG--------HEICTYRGHQNVVYAVAFSEPYGCL-T 245 (616)
Q Consensus 178 ~~~~~l~~h~~~-i~~v~~s~--~g~~lasgs~dg~i~iwd~~~~--------~~~~~~~~h~~~I~~l~fs~~~~ll-s 245 (616)
+....+.+|..+ |++++|+| +|++||+|+.||+|+|||+.++ +....+..|..+|.+++|+|+++++ +
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 355778999999 99999999 9999999999999999999855 6777888999999999999999965 6
Q ss_pred EECC----CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeecee------
Q psy3640 246 GSYD----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSA------ 314 (616)
Q Consensus 246 ~s~d----~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------ 314 (616)
++.+ +.|++|| +++.+..+.+|...|.+++|+ |++. .+++++.|+.|++||+.+++.+..+.+|..
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~ 210 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 210 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence 6666 5778877 778889999999999999999 5565 899999999999999999999999987765
Q ss_pred eEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEe-e---cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcc
Q psy3640 315 EVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTL-K---AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRN 389 (616)
Q Consensus 315 ~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 389 (616)
.++|+|+ ++++++++.||.|++||+.+++.+..+ . .|...|.+++|+ +++++++++.|+.|++||++
T Consensus 211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~------- 282 (615)
T 1pgu_A 211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT------- 282 (615)
T ss_dssp EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT-------
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC-------
Confidence 4589999 999999999999999999999999998 6 899999999999 99999999999999999997
Q ss_pred cccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC--
Q psy3640 390 AYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS-- 463 (616)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~-- 463 (616)
.......+..+ ...+.++.++ ++..+++++.+|.|++||+.+++.+..+..|...|.+++| |+
T Consensus 283 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~ 351 (615)
T 1pgu_A 283 ---------TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLI 351 (615)
T ss_dssp ---------TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTE
T ss_pred ---------CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcE
Confidence 55666666655 4667777775 8899999999999999999998888888777766666665 43
Q ss_pred -------------------------------CCEEEEEeCCCcEEEEecCC-----------------------------
Q psy3640 464 -------------------------------GSKLATASSDQTANLWTVGG----------------------------- 483 (616)
Q Consensus 464 -------------------------------~~~l~~~~~dg~i~iwd~~~----------------------------- 483 (616)
+..+++++.|+.+++|++..
T Consensus 352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 431 (615)
T 1pgu_A 352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 431 (615)
T ss_dssp EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence 44555555555555555432
Q ss_pred ---------------------------------------------ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC
Q psy3640 484 ---------------------------------------------AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518 (616)
Q Consensus 484 ---------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 518 (616)
..... .........+.+++|+|++++|++++.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~ 508 (615)
T 1pgu_A 432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISISPSETYIAAGDV 508 (615)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE---ECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc---cccCCccCceEEEEECCCCCEEEEcCC
Confidence 11000 112223456889999999999999999
Q ss_pred CCcEEEEecCCceEEeEEeec-cccCEEEEEEec----------CCCEEEEEECCCcEEEecCCcC-eeeeEeccCcccE
Q psy3640 519 DQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHP----------TGKLVLSGSQDTTCRLWSTESG-ECIQVLKAHEDDV 586 (616)
Q Consensus 519 dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~sp----------dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~V 586 (616)
||.|++||+.+. +.+..+.+ |...|++++|+| ++++|++++.||.|++||+.++ +++..+.+|.+.|
T Consensus 509 dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 587 (615)
T 1pgu_A 509 MGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 587 (615)
T ss_dssp TSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred CCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence 999999999885 55666777 999999999999 9999999999999999999998 7889999999999
Q ss_pred EEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 587 FSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 587 ~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
++++|+|+++ |++++.||+|++|++..
T Consensus 588 ~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 588 NNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999 99999999999999875
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-52 Score=488.18 Aligned_cols=412 Identities=24% Similarity=0.391 Sum_probs=354.1
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCC
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKS 259 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~ 259 (616)
..+.+|...|++++|+|+|+++|+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++ +++.|++|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 3567999999999999999999999999999999999999999999999999999999999855 899999999999999
Q ss_pred CceEEEeeCCCCcEEEEEEeCC-CCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEE
Q psy3640 260 GHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTAR 335 (616)
Q Consensus 260 ~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~ 335 (616)
++.+..+.+|...|.+++|++. ++..+++++.|+.|++||+.++++...+.+|... ++|+|+++.+++++.||.|+
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~ 768 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence 9999999999999999999943 5668999999999999999999999999887755 48999999999999999999
Q ss_pred EEECCCCceeEEee-------------------------------------------------------cCCcCEEEEEE
Q psy3640 336 IFNTNSGQEMHTLK-------------------------------------------------------AHTGPVISLQF 360 (616)
Q Consensus 336 i~d~~~~~~~~~~~-------------------------------------------------------~~~~~v~~l~~ 360 (616)
+||+.+++....+. +|...|.+++|
T Consensus 769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~ 848 (1249)
T 3sfz_A 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF 848 (1249)
T ss_dssp EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence 99988765443321 57788999999
Q ss_pred cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE-------------------------
Q psy3640 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN------------------------- 415 (616)
Q Consensus 361 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~------------------------- 415 (616)
+|+++++++++.||.|++||+. .......+.+|...|.+
T Consensus 849 sp~~~~l~~~~~dg~v~vwd~~----------------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 849 SPYDHLAVIALSQYCVELWNID----------------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CSSTTEEEEECSSSCEEEEETT----------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred cCCCCEEEEEeCCCeEEEEEcC----------------CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 9999999999999999999987 33334444444444444
Q ss_pred ------------------------------------------------------EEEccCCCEEEEEeCCCcEEEEeCCC
Q psy3640 416 ------------------------------------------------------CLFNFSNSMIASSSLDGTAKLWDVRT 441 (616)
Q Consensus 416 ------------------------------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~ 441 (616)
++++|+++++++|+.+|.|++||+.+
T Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~ 992 (1249)
T 3sfz_A 913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN 992 (1249)
T ss_dssp HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence 44555555555555555555555556
Q ss_pred CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCc
Q psy3640 442 MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT 521 (616)
Q Consensus 442 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 521 (616)
+.....+.+|...|.+++|+|+++++++++.||.|++|++.++.... ... ....+.+++++|++ .+++++.||.
T Consensus 993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~~~---~~~~v~~~~~~~~~-~l~~~~~dg~ 1066 (1249)
T 3sfz_A 993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQA---HQETVKDFRLLQDS-RLLSWSFDGT 1066 (1249)
T ss_dssp TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC--CBC---CSSCEEEEEECSSS-EEEEEESSSE
T ss_pred CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE--Eec---CCCcEEEEEEcCCC-cEEEEECCCc
Confidence 66666777899999999999999999999999999999998864432 223 33458889999965 5788999999
Q ss_pred EEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640 522 AKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 522 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~ 601 (616)
|++||+.++ .....+.+|.+.|++++|+|++++|++++.||+|++||+.+++++..+.+|.++|++++|+|++++|+++
T Consensus 1067 v~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A 1067 VKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp EEEEETTTT-CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEECCCC-ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence 999999885 6677788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEcccCCC
Q psy3640 602 SKDNTCCIWRSMNR 615 (616)
Q Consensus 602 s~Dg~i~vW~~~~~ 615 (616)
+.||+|++|++.+.
T Consensus 1146 ~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1146 DDNGEIRIWNVSDG 1159 (1249)
T ss_dssp ETTSCCCEEESSSS
T ss_pred eCCCEEEEEECCCC
Confidence 99999999999864
No 7
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-52 Score=466.72 Aligned_cols=424 Identities=11% Similarity=0.053 Sum_probs=331.8
Q ss_pred cccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCc
Q psy3640 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGH 261 (616)
Q Consensus 183 l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~ 261 (616)
..+|...|++++|+|+|++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| ++ +++++.|++|++||+.+++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 4589999999999999999999999999999999887766554 4888999999999 77 6799999999999999999
Q ss_pred eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-----------Eeeec---eeeEEEcCC-CCEEE
Q psy3640 262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-----------TYRGH---SAEVTFSPD-QSTFC 326 (616)
Q Consensus 262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~~~---~~~v~~~~~-~~~l~ 326 (616)
.+..+. |...|++++|+ |+++++++|+.||.|++||+.+++... .+.+| ...++|+|+ +..++
T Consensus 91 ~~~~~~-~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 91 VLTTVF-VPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp EEEEEE-CSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred EEEEEc-CCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 998887 77899999999 899999999999999999999887531 11223 346799996 57899
Q ss_pred EEeCCCcEEEEECCCCceeEEeecC------------------CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLKAH------------------TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 388 (616)
+|+.||.| +||+++++.+..+..| ...|.+++|+|+|++|++|+.||.|++||++......
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999988888765 4779999999999999999999999999996532110
Q ss_pred c------------------------ccccccc----ccC---------------CcceEEEe------------------
Q psy3640 389 N------------------------AYAESTY----RAS---------------HKPIHILT------------------ 407 (616)
Q Consensus 389 ~------------------------~~~~~~~----~~~---------------~~~~~~~~------------------ 407 (616)
. ....-.. .+. ...+..+.
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 0 0000000 000 00111111
Q ss_pred ------------cCccceeEEEEcc----------CCCEEEEEeCCCcEEEEeCCCCeEEEE-------e----------
Q psy3640 408 ------------GHSQEISNCLFNF----------SNSMIASSSLDGTAKLWDVRTMCCFYT-------L---------- 448 (616)
Q Consensus 408 ------------~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~---------- 448 (616)
.+...+..+.+.+ +...+++++.||.|++||+.++..... +
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 1234455555543 334788888999999999877643321 1
Q ss_pred ------------------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-eEEe-cc-----CCC
Q psy3640 449 ------------------------KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL-QTFY-GH-----SNE 497 (616)
Q Consensus 449 ------------------------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~-----~~~ 497 (616)
.+|...+.+++|+|++++|++++.|++|++||+..+.... ..+. .. ...
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 2233334445567899999999999999999997752110 0010 00 123
Q ss_pred eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce--------------------------------------------EE
Q psy3640 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV--------------------------------------------EL 533 (616)
Q Consensus 498 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------------~~ 533 (616)
...|.+++|+|++++||+|+.||.|++|++.+.. ++
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 3568999999999999999999999999986541 34
Q ss_pred eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee-----Eec-cCcccEEEEEEe-----eCC---CEEE
Q psy3640 534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ-----VLK-AHEDDVFSCGFN-----YNG---DTII 599 (616)
Q Consensus 534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~~~---~~l~ 599 (616)
+..+.+|.++|++++||||| +||+|+.|++|+|||++++..+. .+. +|.+.|++++|+ ||| ++|+
T Consensus 568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 67788899999999999999 99999999999999998887663 233 899999999999 885 8999
Q ss_pred EeeCCCcEEEccc
Q psy3640 600 TASKDNTCCIWRS 612 (616)
Q Consensus 600 t~s~Dg~i~vW~~ 612 (616)
+|+.|++|++|++
T Consensus 647 sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 647 CGTDMGEVITYKI 659 (902)
T ss_dssp EEETTSEEEEEEE
T ss_pred EEecCCcEEEEEE
Confidence 9999999999998
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.1e-49 Score=432.25 Aligned_cols=407 Identities=15% Similarity=0.206 Sum_probs=352.5
Q ss_pred ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC----cEEEEEeccCCc-EEEEEEcC--CCCEE-EEECCCcEEEE
Q psy3640 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG----HEICTYRGHQNV-VYAVAFSE--PYGCL-TGSYDRTCKLW 255 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~h~~~-I~~l~fs~--~~~ll-s~s~d~~I~iw 255 (616)
..|.+.|++++|+|+|++||+++ ++.|+|||+.++ +....+.+|... |++++|+| +++++ +++.||.|++|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46899999999999999999999 789999999999 899999999999 99999999 99855 88999999999
Q ss_pred eCCCC--------ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEeeeceee---EEEcC
Q psy3640 256 DIKSG--------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYRGHSAE---VTFSP 320 (616)
Q Consensus 256 d~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~---v~~~~ 320 (616)
|+.++ +....+..|...|.+++|+ |+++++++++.+ +.|.+|| .++.+..+.+|... ++|+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 99855 6778888999999999999 889999999988 6888888 66777777777654 58999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCceeEEeecCCc---CEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 321 DQS-TFCSCSMDHTARIFNTNSGQEMHTLKAHTG---PVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 321 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ ++++++++.||.|++||++
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~------------- 237 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK------------- 237 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-------------
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-------------
Confidence 998 899999999999999999999999999999 9999999999 9999999999999999997
Q ss_pred cccCCcceEEE-e---cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEE
Q psy3640 396 YRASHKPIHIL-T---GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKL 467 (616)
Q Consensus 396 ~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l 467 (616)
....+..+ . .|...|.+++|+ ++.++++++.|+.|++||+++++.+..+..+ ...+.++.|+ ++.++
T Consensus 238 ---~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 312 (615)
T 1pgu_A 238 ---SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRI 312 (615)
T ss_dssp ---TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEE
T ss_pred ---CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeE
Confidence 66667777 5 899999999999 9999999999999999999999999988876 3678888886 88999
Q ss_pred EEEeCCCcEEEEecCCceeeeeEEeccCCC------------------------------ee------------------
Q psy3640 468 ATASSDQTANLWTVGGAVELLQTFYGHSNE------------------------------VS------------------ 499 (616)
Q Consensus 468 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------------~~------------------ 499 (616)
++++.||.+++||+..... ...+..|... ..
T Consensus 313 ~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 391 (615)
T 1pgu_A 313 ISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391 (615)
T ss_dssp EEEETTSCEEEEETTEEEE-EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred EEEECCCCEEEEECCCCcE-EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence 9999999999999876422 2222222111 01
Q ss_pred --------------------------------------------------------eEEEEEEcCCCCEEEEEeC-CCcE
Q psy3640 500 --------------------------------------------------------KVLDIAFDYSGSKLATASS-DQTA 522 (616)
Q Consensus 500 --------------------------------------------------------~i~~~~~s~~~~~l~~~~~-dg~i 522 (616)
.+.+++++ ++++++++. |+.|
T Consensus 392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI 469 (615)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence 12233333 566777777 8888
Q ss_pred EEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-CcccEEEEEEee--------
Q psy3640 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA-HEDDVFSCGFNY-------- 593 (616)
Q Consensus 523 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~~s~-------- 593 (616)
++||+.+.......+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 549 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence 88888764222266778999999999999999999999999999999999999999988 999999999999
Q ss_pred --CCCEEEEeeCCCcEEEcccCCC
Q psy3640 594 --NGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 594 --~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
++++|++++.||.|++|++.+.
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ccCCCEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999999864
No 9
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-50 Score=473.71 Aligned_cols=428 Identities=25% Similarity=0.361 Sum_probs=368.5
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC---EEEEECCCcEEE
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG---CLTGSYDRTCKL 254 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~---lls~s~d~~I~i 254 (616)
+....+.+|..+|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++. +++++.|+.|++
T Consensus 648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v 727 (1249)
T 3sfz_A 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727 (1249)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999543 458999999999
Q ss_pred EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee------------------------
Q psy3640 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR------------------------ 310 (616)
Q Consensus 255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------ 310 (616)
||+.+++.+..+.+|.+.|.+++|+ |+++.+++++.||.|++||+.+++....+.
T Consensus 728 wd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 728 WDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EETTSSSEEEEECCCSSCEEEEEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EECCCcchhheecCCCCCEEEEEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 9999999999999999999999999 889999999999999999988775544331
Q ss_pred -------------------------------ec---eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEE
Q psy3640 311 -------------------------------GH---SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVI 356 (616)
Q Consensus 311 -------------------------------~~---~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 356 (616)
+| ...++|+|++..+++++.+|.|++||+.++..+..+.+|...|.
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence 11 23457999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEecccccCCcccc---------------------------------------------
Q psy3640 357 SLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY--------------------------------------------- 391 (616)
Q Consensus 357 ~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--------------------------------------------- 391 (616)
+++|+|+++.+++++.||.|++|++..........
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999999999975321000000
Q ss_pred ----------c--------ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q psy3640 392 ----------A--------ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453 (616)
Q Consensus 392 ----------~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 453 (616)
. .--..........+.+|...|.+++|+|+++++++++.||.|++||+.+++.. .+..|..
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~ 1045 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQE 1045 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSS
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCC
Confidence 0 00000133455666789999999999999999999999999999999999876 4557899
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533 (616)
Q Consensus 454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 533 (616)
.|.+++|+|++ .+++++.||.+++||+.++. ....+..|... +.+++|+|+++++++++.|+.|++||+.+. ..
T Consensus 1046 ~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~---v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~-~~ 1119 (1249)
T 3sfz_A 1046 TVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-IERDFTCHQGT---VLSCAISSDATKFSSTSADKTAKIWSFDLL-SP 1119 (1249)
T ss_dssp CEEEEEECSSS-EEEEEESSSEEEEEETTTTC-CCEEEECCSSC---CCCEEECSSSSSCEEECCSSCCCEECSSSS-SC
T ss_pred cEEEEEEcCCC-cEEEEECCCcEEEEECCCCc-eeEEEcccCCc---EEEEEECCCCCEEEEEcCCCcEEEEECCCc-ce
Confidence 99999999965 67889999999999998763 44455555544 677899999999999999999999999874 56
Q ss_pred eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe---------ccCcccEEEEEEeeCCCEEEEeeCC
Q psy3640 534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL---------KAHEDDVFSCGFNYNGDTIITASKD 604 (616)
Q Consensus 534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~~~~~l~t~s~D 604 (616)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|||++|++++
T Consensus 1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-- 1197 (1249)
T 3sfz_A 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-- 1197 (1249)
T ss_dssp SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--
T ss_pred eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--
Confidence 6778899999999999999999999999999999999999988765 67999999999999999999886
Q ss_pred CcEEEcccCCC
Q psy3640 605 NTCCIWRSMNR 615 (616)
Q Consensus 605 g~i~vW~~~~~ 615 (616)
|.|++||+.+.
T Consensus 1198 g~v~vwd~~~g 1208 (1249)
T 3sfz_A 1198 GYLKWWNVATG 1208 (1249)
T ss_dssp SSEEEBCSSSC
T ss_pred CeEEEEECCCC
Confidence 89999998764
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-48 Score=435.36 Aligned_cols=422 Identities=14% Similarity=0.145 Sum_probs=325.6
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceE
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEI 263 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~ 263 (616)
.|..+|++++|+| |++||+++.|++|+|||+.+++.+..+. |...|++++|+|++.++ +|+.||+|++||+.+++..
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999998886 77899999999999955 8999999999999998764
Q ss_pred -----------EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--------------------
Q psy3640 264 -----------CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-------------------- 312 (616)
Q Consensus 264 -----------~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------------- 312 (616)
..+.+|.+.|.+++|+|.++..+++|+.||.| +||+++++++..+..+
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 23467999999999995566899999999999 9999999988888755
Q ss_pred -eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--e---ec-------------CCcCEEEEEEc----CCC-CEEE
Q psy3640 313 -SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT--L---KA-------------HTGPVISLQFS----SDR-NMLI 368 (616)
Q Consensus 313 -~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---~~-------------~~~~v~~l~~~----~~~-~~l~ 368 (616)
...++|+|++.+|++++.||.|++||+++++.+.. + .. |..+|.+++|+ |++ .+++
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 45678999999999999999999999999887654 2 11 34579999995 443 4677
Q ss_pred EEECC-----CcEEEEecccc-----------------------cC--Ccc------------cc----cc---------
Q psy3640 369 TGSFD-----SSIVVWDIQYQ-----------------------FG--TRN------------AY----AE--------- 393 (616)
Q Consensus 369 ~g~~d-----g~i~iwd~~~~-----------------------~~--~~~------------~~----~~--------- 393 (616)
+|+.+ ..+.+|++... .. ... .. ..
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence 77665 37888874210 00 000 00 00
Q ss_pred -c---ccc-cCCcc-----------------------------------------eEEEecCccceeEEEEccCCCEEEE
Q psy3640 394 -S---TYR-ASHKP-----------------------------------------IHILTGHSQEISNCLFNFSNSMIAS 427 (616)
Q Consensus 394 -~---~~~-~~~~~-----------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~ 427 (616)
. ... ..+.+ ...+.+|...+..++|+|+++.+++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 0 000 00000 0012334444555667889999999
Q ss_pred EeCCCcEEEEeCCCCeEE----EE--ee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-----------
Q psy3640 428 SSLDGTAKLWDVRTMCCF----YT--LK-----NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV----------- 485 (616)
Q Consensus 428 ~~~dg~i~iwd~~~~~~~----~~--~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----------- 485 (616)
|+.|++|++||+.++... .. +. +|...|.+++|+|++++||+|+.||+|++|++.+..
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 999999999999876421 11 11 688899999999999999999999999999997542
Q ss_pred ---------------------------------eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceE
Q psy3640 486 ---------------------------------ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE 532 (616)
Q Consensus 486 ---------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 532 (616)
.....+.+|. ..|.+++|+|+| +||+|+.|+.|++||+++...
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~---~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK---GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS---CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC---CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 1123333443 458899999999 999999999999999987533
Q ss_pred EeE----Eee-ccccCEEEEEEe-----cCC---CEEEEEECCCcEEEecC---CcCeeeeEeccCc-----ccEEEEE-
Q psy3640 533 LLQ----TFY-GHSNEVSKVSFH-----PTG---KLVLSGSQDTTCRLWST---ESGECIQVLKAHE-----DDVFSCG- 590 (616)
Q Consensus 533 ~~~----~~~-~h~~~v~~l~~s-----pdg---~~l~s~s~dg~i~iwd~---~~~~~~~~~~~h~-----~~V~~l~- 590 (616)
... .+. +|.+.|++++|+ ||| ++|++|+.|++|++||+ .+|+....+.+|. ++|.+++
T Consensus 609 ~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~ 688 (902)
T 2oaj_A 609 IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDA 688 (902)
T ss_dssp EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEE
T ss_pred EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEe
Confidence 221 232 889999999999 885 89999999999999999 8999988888774 6777776
Q ss_pred Ee----------------------eCCCEEEEeeCCCcEEEcccCCC
Q psy3640 591 FN----------------------YNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 591 ~s----------------------~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
|+ +++..|+++ +..|+||++.+.
T Consensus 689 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~ 733 (902)
T 2oaj_A 689 FSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS 733 (902)
T ss_dssp EETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred EecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence 66 344444444 778999999763
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.3e-49 Score=439.48 Aligned_cols=407 Identities=21% Similarity=0.285 Sum_probs=352.7
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW 255 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw 255 (616)
+...+.+.+|..+|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++.+ ++++.||.|++|
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 3456889999999999999999999999999999999999999999999999999999999999984 589999999999
Q ss_pred eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeecee---eEEEcC-CCCEEEEEeC
Q psy3640 256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSA---EVTFSP-DQSTFCSCSM 330 (616)
Q Consensus 256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~---~v~~~~-~~~~l~~~~~ 330 (616)
|+.+++.+..+.+|.+.|.+++|+ |++.++++++.||.|++||+.++ .....+.+|.. .++|+| ++..+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred ECCCCcEEEEEecCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999 88999999999999999999987 66667766654 458999 8899999999
Q ss_pred CCcEEEEECCCCceeEEeecCC-cCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 331 DHTARIFNTNSGQEMHTLKAHT-GPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
||.|++||+.++.....+..+. ..+.+++|+| ++.++++++.||.|++||+. .......+.
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----------------~~~~~~~~~ 225 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----------------TKSCVATLE 225 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----------------TTEEEEEEE
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----------------CCcEEEEEc
Confidence 9999999999888877776655 8899999999 99999999999999999997 667788888
Q ss_pred cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCCcee
Q psy3640 408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 408 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~ 486 (616)
+|...+.+++|+|++.++++++.||.|++||+.+++....+..+...+.+++|+|++.. +++++.++.+.+|++.....
T Consensus 226 ~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999873 24445566788888754322
Q ss_pred eeeEE------e-c--------------------------------cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 487 LLQTF------Y-G--------------------------------HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527 (616)
Q Consensus 487 ~~~~~------~-~--------------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 527 (616)
..... . . .......+.+++|+|+|+++++++ ++.+.+|++
T Consensus 306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence 11100 0 0 001112357899999999999998 899999998
Q ss_pred CCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCC---CEEEEeeCC
Q psy3640 528 GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNG---DTIITASKD 604 (616)
Q Consensus 528 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~t~s~D 604 (616)
..... .+.+.+++++|+|+++++++++.+|.|++|+ .+.+|...+.+++|+|++ .+|++++.|
T Consensus 385 ~~~~~------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d 450 (814)
T 3mkq_A 385 LAWRN------KAFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSD 450 (814)
T ss_dssp TTTEE------EEEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEET
T ss_pred ccccc------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecC
Confidence 65322 2346788999999999999999999999995 345677889999999998 689999999
Q ss_pred CcEEEcccCCC
Q psy3640 605 NTCCIWRSMNR 615 (616)
Q Consensus 605 g~i~vW~~~~~ 615 (616)
++|++||+.+.
T Consensus 451 ~~v~~~d~~~~ 461 (814)
T 3mkq_A 451 GFVYFFDWDNG 461 (814)
T ss_dssp TEEEEECTTTC
T ss_pred CEEEEEECCcC
Confidence 99999999764
No 12
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.7e-46 Score=382.08 Aligned_cols=288 Identities=30% Similarity=0.501 Sum_probs=272.9
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW 255 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw 255 (616)
......+.+|..+|++++|+|++++||+|+.||+|+|||+.+++....+.+|...|.+++|+|++.++ +++.|++|++|
T Consensus 98 ~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999855 99999999999
Q ss_pred eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCC
Q psy3640 256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDH 332 (616)
Q Consensus 256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg 332 (616)
|+.+++.+..+.+|...|.+++|+ |+++++++|+.|++|++||+.++.++..+.+|... ++++|++.++++++.|+
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~ 256 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence 999999999999999999999999 88999999999999999999999999999888654 47999999999999999
Q ss_pred cEEEEECCCCceeEEeecCCcCEEEEEEcCC--------------------CCEEEEEECCCcEEEEecccccCCccccc
Q psy3640 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSD--------------------RNMLITGSFDSSIVVWDIQYQFGTRNAYA 392 (616)
Q Consensus 333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 392 (616)
.|++||+.+++....+..|...|.+++|+|+ +.+|++|+.|+.|++||++
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~---------- 326 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---------- 326 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----------
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----------
Confidence 9999999999999999999999999999996 6789999999999999998
Q ss_pred ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS 472 (616)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~ 472 (616)
...++..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++.+|++++.
T Consensus 327 ------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 327 ------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp ------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred ------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 77788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEec
Q psy3640 473 DQTANLWTV 481 (616)
Q Consensus 473 dg~i~iwd~ 481 (616)
||.|++|+.
T Consensus 401 D~~i~vW~~ 409 (410)
T 1vyh_C 401 DQTVKVWEC 409 (410)
T ss_dssp TSEEEEEC-
T ss_pred CCcEEEEeC
Confidence 999999986
No 13
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-45 Score=411.23 Aligned_cols=394 Identities=17% Similarity=0.227 Sum_probs=341.8
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEe
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWD 256 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd 256 (616)
.....+.+|..+|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++. +++++.||.|++||
T Consensus 46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence 34577889999999999999999999999999999999999999999999999999999999998 55899999999999
Q ss_pred CCCC-ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec----eeeEEEcC--CCCEEEEEe
Q psy3640 257 IKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----SAEVTFSP--DQSTFCSCS 329 (616)
Q Consensus 257 ~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~--~~~~l~~~~ 329 (616)
+.++ .....+.+|...|.+++|+|.+++.+++++.||.|++||+.+++....+..+ ...++|+| ++..+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 9987 6778889999999999999448899999999999999999988887777643 34568998 999999999
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (616)
.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+. .......+..+
T Consensus 206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~----------------~~~~~~~~~~~ 269 (814)
T 3mkq_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS----------------TYKVEKTLNVG 269 (814)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----------------TCSEEEEECCS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999997 67788888899
Q ss_pred ccceeEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEEEE----------------------------------------
Q psy3640 410 SQEISNCLFNFSNS--MIASSSLDGTAKLWDVRTMCCFYT---------------------------------------- 447 (616)
Q Consensus 410 ~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------- 447 (616)
...+.+++|+|++. ++++++ ++.+.+|++........
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ 348 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC
T ss_pred CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee
Confidence 99999999999987 455544 66788888754322111
Q ss_pred ---eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640 448 ---LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524 (616)
Q Consensus 448 ---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v 524 (616)
+..+...+.+++|+|+|+++++++ ++.+.+|++....... ...+.+++|+|+++++++++.+|.+++
T Consensus 349 ~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~---------~~~i~~~~~spdg~~la~~~~~g~v~l 418 (814)
T 3mkq_A 349 TKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA---------FGKCQDFVWGPDSNSYALIDETGQIKY 418 (814)
T ss_dssp CEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE---------EEECSEEEECTTSSCEEEECTTCCEEE
T ss_pred eecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC---------CCceEEEEEeCCCCeEEEEeCCCcEEE
Confidence 122344678999999999999998 8999999986542211 234668999999999999999999999
Q ss_pred EecCCceEEeEEeeccccCEEEEEEecCC---CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640 525 WTVGGAVELLQTFYGHSNEVSKVSFHPTG---KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~ 601 (616)
|+. +.+|...+.+++|+|++ ++|++++.|+.|++||+.+++.+..+..|.. .++|+|+|++|+++
T Consensus 419 ~~~---------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~ 486 (814)
T 3mkq_A 419 YKN---------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIV 486 (814)
T ss_dssp EET---------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEE
T ss_pred EEC---------CCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEE
Confidence 963 35688889999999998 6899999999999999999999999988875 89999999999999
Q ss_pred ------eCCCcEEEc
Q psy3640 602 ------SKDNTCCIW 610 (616)
Q Consensus 602 ------s~Dg~i~vW 610 (616)
+.++.+.+|
T Consensus 487 ~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 487 NTNSNGDEASGYTLL 501 (814)
T ss_dssp ECCCSSCSCSEEEEE
T ss_pred EcCcccCCceEEEEE
Confidence 666655555
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=358.81 Aligned_cols=286 Identities=27% Similarity=0.454 Sum_probs=265.9
Q ss_pred hheecccCCcceEEEEECCC----CCEEEEEECCCcEEEEECCCCcE--EEEEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640 179 KFKMLKSHLLPLTNITFDKF----GTRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGCL-TGSYDRT 251 (616)
Q Consensus 179 ~~~~l~~h~~~i~~v~~s~~----g~~lasgs~dg~i~iwd~~~~~~--~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~ 251 (616)
.++.+++|.++|++++|+|+ +.+||+|+.|++|+|||+.+++. ...+.+|...|.+++|++++.++ +++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 45778899999999999985 67999999999999999987754 44688999999999999999855 8999999
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEE
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSC 328 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~ 328 (616)
|++||+.+++.+..+..|...+.+++|+ |+++++++++.|+.+++|++.+++....+..+.. .++|+|++++++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999999 8999999999999999999999998888876644 56899999999999
Q ss_pred eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640 329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408 (616)
Q Consensus 329 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (616)
+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||++ .......+.+
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----------------~~~~~~~~~~ 246 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----------------HANLAGTLSG 246 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT----------------TCCEEEEECC
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----------------CcceeEEEcC
Confidence 999999999999999999999999999999999999999999999999999997 6677788899
Q ss_pred CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 409 HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481 (616)
Q Consensus 409 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 481 (616)
|...|.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++++|++++.||.|++||.
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.9e-45 Score=363.49 Aligned_cols=286 Identities=20% Similarity=0.350 Sum_probs=261.5
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW 255 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw 255 (616)
....+.+++|..+|++++|+|+|++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++ +++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999955 89999999999
Q ss_pred eCCCC----ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEE
Q psy3640 256 DIKSG----HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSC 328 (616)
Q Consensus 256 d~~~~----~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~ 328 (616)
|+.++ +....+.+|.+.|.++.|+ ++ ..+++++.|++|++||+.+++.+..+.+|... ++|+|++.++++|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEE-ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEEC-CC-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99876 3566788999999999998 44 45999999999999999999999999877654 5899999999999
Q ss_pred eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640 329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408 (616)
Q Consensus 329 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (616)
+.||.|++||+++++....+.+|...|.+++|+|++++|++|+.||+|++||++ ....+..+..
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----------------~~~~~~~~~~ 266 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR----------------ADQELMTYSH 266 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEEECC
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC----------------CCcEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999997 4444444332
Q ss_pred --CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640 409 --HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT 480 (616)
Q Consensus 409 --~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 480 (616)
+...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 335799999999999999999999999999999999999999999999999999999999999999999997
No 16
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.3e-44 Score=371.30 Aligned_cols=306 Identities=28% Similarity=0.453 Sum_probs=273.5
Q ss_pred EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640 264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTN 340 (616)
Q Consensus 264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~ 340 (616)
..+.+|.++|++++|+ |++.++++|+.||+|++||+.+++....+.+|... ++|+|+++++++|+.|+.|++||+.
T Consensus 102 ~~l~gh~~~V~~~~~~-p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CEEECCSSCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred EeecccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 5678999999999999 88999999999999999999999999999988755 4899999999999999999999999
Q ss_pred CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640 341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420 (616)
Q Consensus 341 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 420 (616)
+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++ ....+..+.+|...+.++.+++
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~----------------~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----------------TGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----------------TCCEEEEEECCSSCEEEEEECT
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEEeCCCccEEEEEECC
Confidence 999999999999999999999999999999999999999998 6778888999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee
Q psy3640 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500 (616)
Q Consensus 421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 500 (616)
++.++++|+.|+.|++||++++.+...+..|...|.+++|+|++.+.......+.
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~------------------------- 299 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS------------------------- 299 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC-------------------------
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc-------------------------
Confidence 9999999999999999999999999999999999999999997643211100000
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec
Q psy3640 501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK 580 (616)
Q Consensus 501 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 580 (616)
........+.++++|+.|+.|++||+.++ ..+..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+.
T Consensus 300 -~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 300 -ETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp -C-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred -cccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 00122345789999999999999999885 6777889999999999999999999999999999999999999999999
Q ss_pred cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 581 AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 581 ~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+|...|++++|+|++.+|++|+.||+|++|++.
T Consensus 378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999863
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.1e-44 Score=356.82 Aligned_cols=288 Identities=24% Similarity=0.425 Sum_probs=261.6
Q ss_pred EEEeeCCCCcEEEEEEeCC---CCCEEEEEECCCeEEEEeCCCcce--eEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640 263 ICTYRGHQNVVYAVAFSEP---YGDKILTGSFDKTLKLWASAKEEC--IQTYRGHSAE---VTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i 334 (616)
...+.+|.+.|++++|++. ++..|++|+.|++|++|++..++. ...+.+|... +++++++..+++++.|+.|
T Consensus 25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i 104 (321)
T 3ow8_A 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104 (321)
T ss_dssp EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3566789999999999842 467999999999999999887654 4456777654 4799999999999999999
Q ss_pred EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|+++ .......+..+...+.
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~----------------~~~~~~~~~~~~~~v~ 168 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE----------------SGKKEYSLDTRGKFIL 168 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT----------------TCSEEEEEECSSSCEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC----------------CCceeEEecCCCceEE
Confidence 999999999999999999999999999999999999999999999998 6667778888999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 494 (616)
+++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+...
T Consensus 169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------- 238 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------- 238 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC----------
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998653
Q ss_pred CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574 (616)
Q Consensus 495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 574 (616)
.....+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus 239 -------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 239 -------------------------------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp -------------------------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred -------------------------------------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 3344567899999999999999999999999999999999999
Q ss_pred eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 575 CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 575 ~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
++..+.+|.+.|.+++|+|++++|++++.||+|++||+.
T Consensus 282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999999974
No 18
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3e-43 Score=353.73 Aligned_cols=286 Identities=23% Similarity=0.358 Sum_probs=260.5
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEe
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWD 256 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd 256 (616)
...+.+++|..+|++++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.++ +++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 3457789999999999999999999999999999999999999999999999999999999999955 899999999999
Q ss_pred CCCC------ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcC--CCCEE
Q psy3640 257 IKSG------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSP--DQSTF 325 (616)
Q Consensus 257 ~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~--~~~~l 325 (616)
+... .....+.+|.+.|.+++|+ +++..+++++.|++|++||+++++++..+.+|...+ +++| +++.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 8654 3456778899999999999 889999999999999999999999999999887644 6766 57899
Q ss_pred EEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 326 CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 326 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||++ .......
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----------------~~~~~~~ 277 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR----------------ADREVAI 277 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCcEEEE
Confidence 999999999999999999999999999999999999999999999999999999997 3334444
Q ss_pred EecC--ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640 406 LTGH--SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT 480 (616)
Q Consensus 406 ~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 480 (616)
+..+ ...+.+++|+|++.++++|+.|+.|++||+.++..+..+.+|...|.+++|+|++++|++++.|++|++|+
T Consensus 278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 4332 34688999999999999999999999999999999999999999999999999999999999999999996
No 19
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.2e-43 Score=349.75 Aligned_cols=288 Identities=27% Similarity=0.460 Sum_probs=259.5
Q ss_pred ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF 337 (616)
Q Consensus 261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~ 337 (616)
+....+.+|.+.|++++|+ +++++|++++.||+|++||..+++.+..+..+... ++|+|+++++++++.|+.+++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3457889999999999999 88999999999999999999999999888877654 5899999999999999999999
Q ss_pred ECCCC----ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640 338 NTNSG----QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413 (616)
Q Consensus 338 d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 413 (616)
++.++ .....+.+|.+.|.++.|++++ .+++++.|+.|++||+. .......+.+|...|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~----------------~~~~~~~~~~h~~~v 187 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE----------------TGQQTTTFTGHTGDV 187 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECC----------------CCcEEEEEcCCCCce
Confidence 99875 3566778999999999999876 48999999999999997 677788889999999
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG 493 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 493 (616)
.+++|+|++.++++|+.|+.|++||++++.+...+.+|...|.+++|+|++++|++++.||.|++||+........
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~---- 263 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT---- 263 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876421100
Q ss_pred cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
.....+...|++++|+|+|++|++|+.||.|++||+.++
T Consensus 264 -----------------------------------------~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 302 (340)
T 1got_B 264 -----------------------------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302 (340)
T ss_dssp -----------------------------------------ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred -----------------------------------------EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence 001123457999999999999999999999999999999
Q ss_pred eeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
+.+..+.+|.++|.+++|+|++.+|+||+.||+|++||
T Consensus 303 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999999999999999999999999999999999997
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.7e-43 Score=344.78 Aligned_cols=289 Identities=26% Similarity=0.396 Sum_probs=260.2
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW 255 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw 255 (616)
++..+++++|.++|++++|+|+|++||+|+.||+|++||+.++..+..+..|..+|.+++|+|++.+ ++++.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999985 599999999999
Q ss_pred eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeecee---eEEEcC-CCCEEEEEeC
Q psy3640 256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSA---EVTFSP-DQSTFCSCSM 330 (616)
Q Consensus 256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~---~v~~~~-~~~~l~~~~~ 330 (616)
|+.+++.+..+.+|.+.|.+++|+ |++.++++|+.|++|++||++++ .....+.+|.. .++|+| ++..+++|+.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence 999999999999999999999999 88999999999999999999987 44566777764 458999 6789999999
Q ss_pred CCcEEEEECCCCceeEEee-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 331 DHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
|+.|++||+.++.....+. .|...+..+.|+| ++.+|++|+.|++|++||++ ....+..+.
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~----------------~~~~~~~~~ 225 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----------------TKSCVATLE 225 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT----------------TTEEEEEEE
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC----------------CCccceeeC
Confidence 9999999998887666554 4668899999987 67899999999999999998 777888999
Q ss_pred cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCC
Q psy3640 408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS--KLATASSDQTANLWTVGG 483 (616)
Q Consensus 408 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~dg~i~iwd~~~ 483 (616)
+|...|..++|+|++.+|++|+.||.|++||+++++....+..+...+.+++++|++. ++++++.| .+.+|++..
T Consensus 226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999875 46766655 577777654
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-43 Score=362.22 Aligned_cols=337 Identities=19% Similarity=0.256 Sum_probs=288.3
Q ss_pred cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeC----CCCc------eEEEeeC---------
Q psy3640 210 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDI----KSGH------EICTYRG--------- 268 (616)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~----~~~~------~~~~~~~--------- 268 (616)
.+.+|+++..........|.++|.+++|+|++. ++ +++.|+.|++||+ .+++ ....+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 456788877777767777889999999999998 55 8899999999999 8888 4555554
Q ss_pred -CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640 269 -HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQE 344 (616)
Q Consensus 269 -h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 344 (616)
|.+.|.+++|+ |++++|++++.||.|++|| .+++.+..+..|.. .++|+|+++++++++.||.|++||+.+++.
T Consensus 106 ~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 106 KTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp --CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred CCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 68899999999 7899999999999999999 67778888876654 458999999999999999999999999999
Q ss_pred eEEeecCCcC---------------EEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640 345 MHTLKAHTGP---------------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409 (616)
Q Consensus 345 ~~~~~~~~~~---------------v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (616)
+..+..+... +.+++|+|++ .+++++.+|.|++||++ .......+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~----------------~~~~~~~~~~~ 246 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT----------------EKTPTGKLIGH 246 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT----------------CSSCSEEECCC
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC----------------CCceeeeeccC
Confidence 9998887776 8999999874 68899999999999998 66777788899
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489 (616)
Q Consensus 410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 489 (616)
...+.+++|+|+++++++++.||.|++||+++++....+..|...|.+++|+|++ .+++++.|+.+++||+...
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----- 320 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN----- 320 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-----
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-----
Confidence 9999999999999999999999999999999999888898899999999999998 9999999999999988653
Q ss_pred EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569 (616)
Q Consensus 490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 569 (616)
.....+..|...|++++|+|++++|++++.||.|++||
T Consensus 321 ------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 321 ------------------------------------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp ------------------------------------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ------------------------------------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 33445567888999999999999999999999999999
Q ss_pred CCcCe--------------------eeeEeccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 570 TESGE--------------------CIQVLKAHED--DVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 570 ~~~~~--------------------~~~~~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+.+++ .+..+.+|.. .|.+++|+|++++|++++.||.|++|++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99988 8999999976 99999999999999999999999999986
No 22
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.3e-43 Score=359.62 Aligned_cols=341 Identities=18% Similarity=0.298 Sum_probs=289.3
Q ss_pred ccCCcceEEEEECCCCC-EEEEEECCCcEEEEEC----CCCc------EEEEEec----------cCCcEEEEEEcCCCC
Q psy3640 184 KSHLLPLTNITFDKFGT-RCLTGSYDRTCKLWDI----KSGH------EICTYRG----------HQNVVYAVAFSEPYG 242 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~-~lasgs~dg~i~iwd~----~~~~------~~~~~~~----------h~~~I~~l~fs~~~~ 242 (616)
..|..+|++++|+|+|+ +||+|+.||.|++||+ .+++ ....+.. |...|++++|+|++.
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 9999999999999999 8888 5666654 788999999999998
Q ss_pred EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee-------
Q psy3640 243 CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA------- 314 (616)
Q Consensus 243 ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------- 314 (616)
++ +++.|+.|++|| .+++.+..+.+|...|.+++|+ ++++++++++.|+.|++||+.+++.+..+..+..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence 55 889999999999 7788889999999999999999 8899999999999999999999998888765543
Q ss_pred -----------eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccc
Q psy3640 315 -----------EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY 383 (616)
Q Consensus 315 -----------~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~ 383 (616)
.++|+|+ ..+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~- 277 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG- 277 (425)
T ss_dssp ------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-
T ss_pred ccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-
Confidence 3478887 568899999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640 384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463 (616)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 463 (616)
.......+..|...+.+++|+|++ .+++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus 278 ---------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 278 ---------------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp ---------------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred ---------------CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence 666777888899999999999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecccc-
Q psy3640 464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542 (616)
Q Consensus 464 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~- 542 (616)
+++|++++.||.|++|++............ ..++.+.... ...+..+.+|..
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~----~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYG-----------------------NRDGILNPLP----IPLYASYQSSQDN 394 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC-------------------------------------CEE----CCEEEEECCTTCC
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeec-----------------------ccccccCccc----chhhhhhcCcccC
Confidence 999999999999999999765322221111 1111111111 235667788876
Q ss_pred -CEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640 543 -EVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 543 -~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 571 (616)
.|++++|+|++++|++++.||.|++|+++
T Consensus 395 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 395 DYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999999999999999999999999985
No 23
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.5e-43 Score=359.93 Aligned_cols=292 Identities=20% Similarity=0.374 Sum_probs=258.7
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW 255 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw 255 (616)
....+.+++|.++|++++|+|+|++||+|+.||+|+|||+.+++....+.+|...|.+++|+|++.++ +++.|+.|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999955 89999999999
Q ss_pred eCCCCc-------eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-----eecee---eEEEcC
Q psy3640 256 DIKSGH-------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-----RGHSA---EVTFSP 320 (616)
Q Consensus 256 d~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~---~v~~~~ 320 (616)
|+.+.. ....+.+|.+.|.++.|.|..+..|++|+.|++|++||+.+++.+..+ .+|.. .+++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 997542 345678999999999999666778999999999999999999988877 34444 346766
Q ss_pred -CCCEEEEEeCCCcEEEEECC-CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccccccc
Q psy3640 321 -DQSTFCSCSMDHTARIFNTN-SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRA 398 (616)
Q Consensus 321 -~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 398 (616)
++.++++|+.||.|++||++ .++.+..+.+|...|.+++|+|++++|++|+.||+|++||++
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~---------------- 279 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR---------------- 279 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT----------------
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC----------------
Confidence 88999999999999999998 457788899999999999999999999999999999999998
Q ss_pred CCcceEEEecC-------ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ecCCCCEEEEEEcCCCCEE
Q psy3640 399 SHKPIHILTGH-------SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL----KNHEDEVLDIAFDYSGSKL 467 (616)
Q Consensus 399 ~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l 467 (616)
....+..+..+ ...+.+++|+|+++++++|+.||.|++||+.+++....+ .+|.+.|.+++|+|++.+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 359 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence 44444444332 234889999999999999999999999999999888777 5789999999999999999
Q ss_pred EEEeCCCcEEEEecCCc
Q psy3640 468 ATASSDQTANLWTVGGA 484 (616)
Q Consensus 468 ~~~~~dg~i~iwd~~~~ 484 (616)
++|+.|++|++|++...
T Consensus 360 ~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 360 CTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EEECTTSCEEEEECCSS
T ss_pred EEeeCCCCEEEEecCCC
Confidence 99999999999999764
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.7e-42 Score=345.79 Aligned_cols=288 Identities=21% Similarity=0.381 Sum_probs=258.2
Q ss_pred eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece---eeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640 262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFN 338 (616)
Q Consensus 262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~~~dg~i~i~d 338 (616)
....+.+|.+.|++++|+ |++.+|++|+.||+|++||..+++....+..+. ..++|+|++..+++++.|+.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp EEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEecCCCCeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 447889999999999999 889999999999999999999998888877664 4568999999999999999999999
Q ss_pred CCCC------ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc
Q psy3640 339 TNSG------QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE 412 (616)
Q Consensus 339 ~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (616)
+... .....+..|...|.+++|+|++..|++++.|++|++||+. ....+..+.+|...
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~----------------~~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE----------------SGQLLQSFHGHGAD 198 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT----------------TCCEEEEEECCSSC
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC----------------CCeEEEEEcCCCCC
Confidence 8653 3456777899999999999999999999999999999998 77788889999999
Q ss_pred eeEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeE
Q psy3640 413 ISNCLFNF--SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQT 490 (616)
Q Consensus 413 i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 490 (616)
+.++.++| ++..+++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+++++||+.......
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-- 276 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-- 276 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--
Confidence 99999987 46899999999999999999999999999999999999999999999999999999999997642110
Q ss_pred EeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640 491 FYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 491 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
++ ....+...+++++|+|+|++|++|+.|+.|++||+
T Consensus 277 ---------------------------------~~----------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 277 ---------------------------------IY----------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp ---------------------------------EE----------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ---------------------------------EE----------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 00 01123457889999999999999999999999999
Q ss_pred CcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 571 ESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 571 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
.+++.+..+.+|.++|++++|+|+|++|++|+.||+|++|+
T Consensus 314 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999999996
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=348.20 Aligned_cols=314 Identities=25% Similarity=0.361 Sum_probs=249.5
Q ss_pred hhhheecccCCc-ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640 177 YEKFKMLKSHLL-PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC---TYRGHQNVVYAVAFSEPYGCL-TGSYDRT 251 (616)
Q Consensus 177 ~~~~~~l~~h~~-~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~---~~~~h~~~I~~l~fs~~~~ll-s~s~d~~ 251 (616)
+.++..+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++.++ +++.|++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 456788999998 99999999999999999999999999998886432 236899999999999999855 9999999
Q ss_pred EEEEeCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEe
Q psy3640 252 CKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCS 329 (616)
Q Consensus 252 I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~ 329 (616)
|++||+.++. .+..+.+|...|.+++|+ |++++|++++.|++|++||+.++...
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~----------------------- 140 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEY----------------------- 140 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCE-----------------------
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCe-----------------------
Confidence 9999998774 577889999999999999 78999999999999999987644211
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (616)
..+..+..|...|.+++|+|++++|++++.|+.|++||.+.. .......+.+|
T Consensus 141 -------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--------------~~~~~~~~~~h 193 (345)
T 3fm0_A 141 -------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--------------DWVCCATLEGH 193 (345)
T ss_dssp -------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--------------EEEEEEEECCC
T ss_pred -------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--------------CEEEEEEecCC
Confidence 123445678999999999999999999999999999998621 12345678899
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeec-CCCCEEEEEEcCCCCEEEEEeCC
Q psy3640 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM---------------CCFYTLKN-HEDEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d 473 (616)
...|.+++|+|++++|++++.|+.|++||.... .++..+.+ |...|.+++|+|++..|++++.|
T Consensus 194 ~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d 273 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD 273 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC
Confidence 999999999999999999999999999996321 23444444 67788888888888888888888
Q ss_pred CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg 553 (616)
+.+++|+......... . . .........+|...|++++|+|++
T Consensus 274 ~~i~vw~~~~~~~~~~-------~---~----------------------------~~~~~~~~~~h~~~V~~v~~~p~~ 315 (345)
T 3fm0_A 274 DAIRVFQEDPNSDPQQ-------P---T----------------------------FSLTAHLHQAHSQDVNCVAWNPKE 315 (345)
T ss_dssp SCEEEEEECTTSCTTS-------C---C----------------------------EEEEEEETTSSSSCEEEEEECSSS
T ss_pred CeEEEEEeCCCCCcce-------e---e----------------------------EEEEeeecccccCcEeEeEEeCCC
Confidence 8888888754311000 0 0 011223345799999999999998
Q ss_pred -CEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640 554 -KLVLSGSQDTTCRLWSTESGECIQVL 579 (616)
Q Consensus 554 -~~l~s~s~dg~i~iwd~~~~~~~~~~ 579 (616)
.+||+|+.||+|++|++.+++.....
T Consensus 316 ~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 316 PGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTEEEEEETTSCEEEEEECC-------
T ss_pred ceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 49999999999999999988766544
No 26
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.9e-42 Score=338.20 Aligned_cols=292 Identities=22% Similarity=0.345 Sum_probs=249.6
Q ss_pred ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF 337 (616)
Q Consensus 261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~ 337 (616)
+...++.+|.+.|.+++|+ |+++++++++.||+|++||+.+++.+..+..+... ++|+|+++++++|+.|+.|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 3457889999999999999 88999999999999999999999999988877654 5899999999999999999999
Q ss_pred ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417 (616)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 417 (616)
|+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++. .......+.+|...|.+++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---------------~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---------------NWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG---------------TTEEEEEECCCCSCEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC---------------CcchhhhhcccCCcEEEEE
Confidence 9999999999999999999999999999999999999999999973 2245567889999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640 418 FNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDY--SGSKLATASSDQTANLWTVGGAVELLQTFYG 493 (616)
Q Consensus 418 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 493 (616)
|+| ++..+++|+.|+.|++||++++.....+. .+...+..++|+| ++.+|++++.|+.|++||+.+
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---------- 217 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---------- 217 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----------
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----------
Confidence 999 67899999999999999998876655544 3446677777765 455666666666666666544
Q ss_pred cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
..++..+.+|...|++++|+|++++|++|+.||+|++||+.++
T Consensus 218 -------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 218 -------------------------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp -------------------------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred -------------------------------------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 2556677899999999999999999999999999999999999
Q ss_pred eeeeEeccCcccEEEEEEeeCCC--EEEEeeCCCcEEEcccCCCC
Q psy3640 574 ECIQVLKAHEDDVFSCGFNYNGD--TIITASKDNTCCIWRSMNRD 616 (616)
Q Consensus 574 ~~~~~~~~h~~~V~~l~~s~~~~--~l~t~s~Dg~i~vW~~~~~e 616 (616)
+++..+..|...+.+++|+|++. ++++|+.|| +.+|++.+.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~~ 304 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGNDE 304 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC---
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccCC
Confidence 99999999999999999999885 577776655 7888887654
No 27
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-41 Score=354.02 Aligned_cols=324 Identities=28% Similarity=0.488 Sum_probs=275.7
Q ss_pred hhhhheecccCCcce-EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEE
Q psy3640 176 RYEKFKMLKSHLLPL-TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKL 254 (616)
Q Consensus 176 ~~~~~~~l~~h~~~i-~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~i 254 (616)
++...+.+.+|...| +++ +++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +..+++++.||+|++
T Consensus 107 ~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEE
T ss_pred CcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEE
Confidence 344567899999975 554 4578999999999999999999999999999999999999998 345779999999999
Q ss_pred EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcE
Q psy3640 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i 334 (616)
||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|++||+.
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~--------------------------------- 227 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIE--------------------------------- 227 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESS---------------------------------
T ss_pred EECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECC---------------------------------
Confidence 9999999999999999999999986 4667777776666666654
Q ss_pred EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
+++.+..+.+|...|.+++| +++.+++|+.||.|++||++ ....+..+.+|...+.
T Consensus 228 ------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~ 283 (445)
T 2ovr_B 228 ------TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE----------------TETCLHTLQGHTNRVY 283 (445)
T ss_dssp ------SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG----------------GTEEEEEECCCSSCEE
T ss_pred ------CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC----------------CCcEeEEecCCCCceE
Confidence 44455556678888999998 67889999999999999987 6677788888999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 494 (616)
++.+ ++..+++++.||.|++||+++++.+..+..|...+.++.++ +.++++++.||.|++||+.++
T Consensus 284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~---------- 349 (445)
T 2ovr_B 284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG---------- 349 (445)
T ss_dssp EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC----------
T ss_pred EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC----------
Confidence 9888 78899999999999999999999999999898888888774 568888888888888888653
Q ss_pred CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 571 (616)
.....+. .|...|++++|+ +++|++|+.||.|++||+.
T Consensus 350 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 350 -------------------------------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp -------------------------------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred -------------------------------------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 2222333 378899999995 5799999999999999999
Q ss_pred cCeeeeEe-----ccCcccEEEEEEeeCCCEEEEeeCCCc----EEEcccCCC
Q psy3640 572 SGECIQVL-----KAHEDDVFSCGFNYNGDTIITASKDNT----CCIWRSMNR 615 (616)
Q Consensus 572 ~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~t~s~Dg~----i~vW~~~~~ 615 (616)
+++.+..+ .+|.+.|++++|+|++.+|++++.||+ +.|||+..+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 99999888 578899999999999999999999998 999999753
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.2e-42 Score=338.26 Aligned_cols=288 Identities=22% Similarity=0.389 Sum_probs=254.4
Q ss_pred hhhhheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeccCCcEEEEEEcCCCCEE-EEEC
Q psy3640 176 RYEKFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGCL-TGSY 248 (616)
Q Consensus 176 ~~~~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~-----~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~ 248 (616)
.+.+...|.+|.++|++++|+|++ ++|++|+.|++|++||+.+ +.++..+.+|...|.+++|+|++.++ +++.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345667899999999999999965 8999999999999999864 34577899999999999999999955 9999
Q ss_pred CCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCC----
Q psy3640 249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPD---- 321 (616)
Q Consensus 249 d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~---- 321 (616)
|++|++||+.+++.+..+.+|...|.+++|+ +++.++++++.|++|++||+. ++++..+.+|... +++.|.
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 9999999999999999999999999999999 889999999999999999996 5566777776544 467774
Q ss_pred --CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC
Q psy3640 322 --QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399 (616)
Q Consensus 322 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 399 (616)
+..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++|+.||.|++||+. .
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~----------------~ 227 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA----------------A 227 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT----------------T
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----------------C
Confidence 4589999999999999999999999999999999999999999999999999999999997 5
Q ss_pred CcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--------CCCCEEEEEEcCCCCEEEEEe
Q psy3640 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--------HEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~~~~ 471 (616)
...+..+.. ...+.+++|+|++.++++++.+ .+++|++.....+..+.. +...+.+++|+|+|++|++++
T Consensus 228 ~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 228 KKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp TEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence 556666654 4689999999999999988865 599999998877766643 356799999999999999999
Q ss_pred CCCcEEEEecCC
Q psy3640 472 SDQTANLWTVGG 483 (616)
Q Consensus 472 ~dg~i~iwd~~~ 483 (616)
.||.|++|++.+
T Consensus 306 ~Dg~i~vWd~~t 317 (319)
T 3frx_A 306 TDNVIRVWQVMT 317 (319)
T ss_dssp TTSCEEEEEEEE
T ss_pred cCceEEEEEEee
Confidence 999999999854
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.9e-41 Score=333.57 Aligned_cols=292 Identities=29% Similarity=0.495 Sum_probs=264.4
Q ss_pred hhhhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcE
Q psy3640 174 AQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTC 252 (616)
Q Consensus 174 ~~~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I 252 (616)
.+.+.....+.+|..+|++++|+|+|++||+|+.||.|++|++.+++....+.+|...|.+++|+|++.++ +++.|+.|
T Consensus 10 ~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999855 89999999
Q ss_pred EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEe
Q psy3640 253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCS 329 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~ 329 (616)
++||+.+++.+..+.+|...|.+++|+ |+++++++++.|+.|++||+++++.+..+..|.. .++|+|++.++++++
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 999999999999999999999999999 8899999999999999999999999998887654 458999999999999
Q ss_pred CCCcEEEEECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640 330 MDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (616)
.||.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||++ ....+..+.+
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----------------~~~~~~~~~~ 232 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----------------KGKCLKTYTG 232 (312)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT----------------TTEEEEEECS
T ss_pred CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC----------------CCcEEEEEEe
Confidence 99999999999998877764 466789999999999999999999999999997 6666777777
Q ss_pred CccceeE---EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q psy3640 409 HSQEISN---CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS--SDQTANLWTVG 482 (616)
Q Consensus 409 ~~~~i~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~ 482 (616)
|...... ....+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.+++++ .|+.|++|+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 7655432 23346788999999999999999999999999999999999999999999999987 69999999864
No 30
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.4e-42 Score=341.36 Aligned_cols=325 Identities=19% Similarity=0.266 Sum_probs=276.6
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCce--
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE-- 262 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~-- 262 (616)
-|..+|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++++++.|+.|++||+.+++.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee
Confidence 356789999999999999999888888888776666666666899999999999999977555599999999988753
Q ss_pred -EEEee--CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640 263 -ICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339 (616)
Q Consensus 263 -~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~ 339 (616)
...+. +|...|.+++|+ |+++++++++.|+.|++||+.+++.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~---------------------------------- 131 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTP---------------------------------- 131 (337)
T ss_dssp CSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC------------------------------------
T ss_pred eeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCc----------------------------------
Confidence 33333 788999999998 7788888888888877777654321
Q ss_pred CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEc
Q psy3640 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN 419 (616)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 419 (616)
.....+..|...|.+++|+|+++++++++.||.|++||++ .......+..|...+.+++|+
T Consensus 132 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~----------------~~~~~~~~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 132 ---RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----------------NQTLVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp ---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCEEEEEEC
T ss_pred ---ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC----------------CCceeeeeecccCceEEEEEC
Confidence 1344556688899999999999999999999999999997 667778888899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCee
Q psy3640 420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499 (616)
Q Consensus 420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 499 (616)
|+++.+++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.++.+++|++....
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------------- 257 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-------------- 257 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--------------
T ss_pred CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--------------
Confidence 999999999999999999999998887765 67789999999999999999888888888886531
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640 500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579 (616)
Q Consensus 500 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 579 (616)
...+..|...|++++|+|++++|++++.||.|++||+.+++.+...
T Consensus 258 ----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 303 (337)
T 1gxr_A 258 ----------------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ----------------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence 1134568899999999999999999999999999999999888554
Q ss_pred ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 580 KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 580 ~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
.|...|.+++|+|++++|++++.||.|++|++.
T Consensus 304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 578899999999999999999999999999973
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-41 Score=334.86 Aligned_cols=288 Identities=24% Similarity=0.392 Sum_probs=252.0
Q ss_pred eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-----ceeEEeeeceeeE---EEcCCCCEEEEEeCCCc
Q psy3640 262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-----ECIQTYRGHSAEV---TFSPDQSTFCSCSMDHT 333 (616)
Q Consensus 262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v---~~~~~~~~l~~~~~dg~ 333 (616)
...++.+|.+.|.+++|+|.++++|++|+.|++|++|++... ..+..+.+|...+ +|+|++.++++++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 346789999999999999556799999999999999998643 4566777777554 79999999999999999
Q ss_pred EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413 (616)
Q Consensus 334 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 413 (616)
|++||+.+++.+..+.+|...|.+++|+|++.++++|+.|++|++||++ ...+..+.+|...+
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-----------------~~~~~~~~~h~~~v 151 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-----------------GQCLATLLGHNDWV 151 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-----------------SCEEEEECCCSSCE
T ss_pred EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----------------CCeEEEEeccCCcE
Confidence 9999999999999999999999999999999999999999999999984 45677888999999
Q ss_pred eEEEEccC------CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy3640 414 SNCLFNFS------NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL 487 (616)
Q Consensus 414 ~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 487 (616)
.++.+.|. +..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.||.|++||+...
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~--- 228 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK--- 228 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence 99999985 448999999999999999999999999999999999999999999999999999999998764
Q ss_pred eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEE
Q psy3640 488 LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRL 567 (616)
Q Consensus 488 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i 567 (616)
+.+..+. +..+|.+++|+|++.+|++++.+ .+++
T Consensus 229 --------------------------------------------~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v 262 (319)
T 3frx_A 229 --------------------------------------------KAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKV 262 (319)
T ss_dssp --------------------------------------------EEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEE
T ss_pred --------------------------------------------cEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEE
Confidence 2222233 34679999999999999988765 4999
Q ss_pred ecCCcCeeeeEec--------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 568 WSTESGECIQVLK--------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 568 wd~~~~~~~~~~~--------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
|+++.+..+..+. .|...+.+++|+|||++|++|+.||+|++|++.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 9998887776654 34567999999999999999999999999998764
No 32
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.8e-42 Score=341.85 Aligned_cols=282 Identities=21% Similarity=0.269 Sum_probs=241.5
Q ss_pred ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCC-----------CcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcE
Q psy3640 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS-----------GHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTC 252 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~-----------~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I 252 (616)
..|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++.+++++.||+|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 45778899999999999999888 66788886311 1112233446788999999999999999999999
Q ss_pred EEEeCCCCceEEE----eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcCCCC-E
Q psy3640 253 KLWDIKSGHEICT----YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQS-T 324 (616)
Q Consensus 253 ~iwd~~~~~~~~~----~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~~~-~ 324 (616)
+|||+.+++.+.. +.+|.+.|++++|+ |++++|++|+.|++|++||+.+++++..+.+|...+ +|+|++. .
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 9999999876543 45899999999999 899999999999999999999999999999887654 7999874 7
Q ss_pred EEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640 325 FCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401 (616)
Q Consensus 325 l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 401 (616)
+++++.|+.|++||+++++....+. .|...+.+++|+|+ ++++++|+.||.|++||++ ...
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----------------~~~ 248 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----------------STS 248 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----------------C--
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----------------CCc
Confidence 8999999999999999999888774 45567999999985 5789999999999999998 777
Q ss_pred ceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q psy3640 402 PIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLW 479 (616)
Q Consensus 402 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iw 479 (616)
++..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.. .+.+|.+.|.+++|+|++. +|++++.|++|++|
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 888999999999999999998 57999999999999999998765 5678999999999999986 56789999999999
Q ss_pred ecCCc
Q psy3640 480 TVGGA 484 (616)
Q Consensus 480 d~~~~ 484 (616)
++...
T Consensus 328 ~v~~~ 332 (344)
T 4gqb_B 328 VVPTE 332 (344)
T ss_dssp ECCC-
T ss_pred ECCCC
Confidence 99764
No 33
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.8e-42 Score=346.98 Aligned_cols=283 Identities=19% Similarity=0.299 Sum_probs=242.2
Q ss_pred ccCCcceEEEEECCCCCEEEEEEC------CCcEEEEECCCCcEE----EEEeccCCcEEEEEEcCCCCEEEEECCCcEE
Q psy3640 184 KSHLLPLTNITFDKFGTRCLTGSY------DRTCKLWDIKSGHEI----CTYRGHQNVVYAVAFSEPYGCLTGSYDRTCK 253 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~~lasgs~------dg~i~iwd~~~~~~~----~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~ 253 (616)
..|...|++++|||||++||+|+. |+.|++|+..++... ....+|...|.+++|+|++.+++++.||+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~ 118 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE 118 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence 479999999999999999999997 788999998877543 3456799999999999999999999999999
Q ss_pred EEeCCCCceE----EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCC-EE
Q psy3640 254 LWDIKSGHEI----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQS-TF 325 (616)
Q Consensus 254 iwd~~~~~~~----~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~-~l 325 (616)
+||+.+++.. ....+|.+.|.+++|+ |++++|++++.|+.|++||+.+++++..+.+|... ++|+|++. .+
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 9999988654 3445899999999999 88999999999999999999999999999887654 57999875 78
Q ss_pred EEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640 326 CSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402 (616)
Q Consensus 326 ~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 402 (616)
++++.||.|++||+++++....+. .|...+.+++|+|+ +.+|++|+.|+.|++||++ ....
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----------------~~~~ 261 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----------------NPDS 261 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS----------------CGGG
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC----------------CCcE
Confidence 999999999999999988766553 46778999999997 5689999999999999998 6777
Q ss_pred eEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q psy3640 403 IHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWT 480 (616)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd 480 (616)
...+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+ +|.+.|++++|+| ++.+|++++.||+|++|+
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 88899999999999999987 57899999999999999999887665 7999999999998 799999999999999999
Q ss_pred cCCc
Q psy3640 481 VGGA 484 (616)
Q Consensus 481 ~~~~ 484 (616)
+...
T Consensus 341 ~~~~ 344 (357)
T 4g56_B 341 LPSE 344 (357)
T ss_dssp CC--
T ss_pred CCCC
Confidence 9764
No 34
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.3e-43 Score=354.82 Aligned_cols=307 Identities=26% Similarity=0.443 Sum_probs=262.2
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEE
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSC 328 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~ 328 (616)
+..|+..+......+.+|.+.|++++|+ |++++|++|+.|++|++||..+++....+..|... ++|+|+++++++|
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred ccccccceeEEeecccccccEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 3456666777788999999999999999 78999999999999999999999999999887654 4899999999999
Q ss_pred eCCCcEEEEECCCCc-------eeEEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640 329 SMDHTARIFNTNSGQ-------EMHTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 329 ~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
+.|+.+++||+.+.. ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+. ..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----------------~~ 190 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----------------TG 190 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----------------TC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----------------CC
Confidence 999999999987532 34567789999999999996 4579999999999999997 44
Q ss_pred cceEEE-----ecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640 401 KPIHIL-----TGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 401 ~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 473 (616)
..+..+ .+|...+.++.+++ ++.++++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++++.|
T Consensus 191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 270 (380)
T 3iz6_a 191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270 (380)
T ss_dssp CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence 555544 57889999999976 78999999999999999998 457788899999999999999999999999999
Q ss_pred CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg 553 (616)
|+|++||+.++... ..+..+.. ....+...|++++|+|+|
T Consensus 271 ~~i~lwd~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 271 GTCRLFDMRTGHQL-QVYNREPD---------------------------------------RNDNELPIVTSVAFSISG 310 (380)
T ss_dssp SCEEEEETTTTEEE-EEECCCCS---------------------------------------SSCCSSCSCSEEEECSSS
T ss_pred CeEEEEECCCCcEE-EEeccccc---------------------------------------ccccccCceEEEEECCCC
Confidence 99999999875321 11110000 001234468999999999
Q ss_pred CEEEEEECCCcEEEecCCcCeeeeEe----ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 554 KLVLSGSQDTTCRLWSTESGECIQVL----KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 554 ~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
++|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|+|++|+||+.||+|++|++...
T Consensus 311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999988777 689999999999999999999999999999999763
No 35
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.6e-42 Score=345.40 Aligned_cols=325 Identities=14% Similarity=0.156 Sum_probs=240.0
Q ss_pred EEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee
Q psy3640 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA 314 (616)
Q Consensus 235 l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 314 (616)
+.+.+++.++.++.+.....|++.... ...|...|++++|+ |+|++|++++.|.. ++||
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fS-pDG~~las~s~d~~-~~wd--------------- 69 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYR-RDGALLLAASSLSS-RTWG--------------- 69 (357)
T ss_dssp ---------------------------------CCCSEEEEEEEC-SSSCEEEEEECSSS-SSCC---------------
T ss_pred CCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEEC-CCCCEEEEEcCCCC-cccc---------------
Confidence 445556667777778888999986543 34799999999999 89999999998542 4443
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQE----MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
+.+++|+..++.. ......|...|.+++|+|++. +++++.||+|++||+.....
T Consensus 70 -----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~---- 127 (357)
T 4g56_B 70 -----------------GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKES---- 127 (357)
T ss_dssp -----------------EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-----------
T ss_pred -----------------CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccce----
Confidence 3456666554432 233446888999999999975 56778899999999873211
Q ss_pred ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEE
Q psy3640 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLAT 469 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~ 469 (616)
.........+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. ++++
T Consensus 128 --------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 128 --------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp ---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred --------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence 1112234567999999999999999999999999999999999999999999999999999999875 7899
Q ss_pred EeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVS 548 (616)
Q Consensus 470 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 548 (616)
++.||.|++||+.+........ .......+.+++|+|+ +.++++|+.|+.|++||+.+. +....+.+|...|++++
T Consensus 200 ~~~dg~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EETTSCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEE
T ss_pred eccCCceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEE
Confidence 9999999999998764332221 1122345788999997 568999999999999999885 56778889999999999
Q ss_pred EecCC-CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEee-CCCEEEEeeCCCcEEEcccCC
Q psy3640 549 FHPTG-KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY-NGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 549 ~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++++|+| ++++|+|++.||+|++|++.+
T Consensus 277 ~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 277 YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 99987 58999999999999999999988765 7999999999998 789999999999999999965
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=339.94 Aligned_cols=309 Identities=25% Similarity=0.417 Sum_probs=252.7
Q ss_pred ceEEEeeCCCC-cEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE---eeece---eeEEEcCCCCEEEEEeCCCc
Q psy3640 261 HEICTYRGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT---YRGHS---AEVTFSPDQSTFCSCSMDHT 333 (616)
Q Consensus 261 ~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~---~~v~~~~~~~~l~~~~~dg~ 333 (616)
+.+..+.+|.. .|++++|+ |++++|++|+.|++|++||+.++..... ..+|. ..++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~~h~~~~v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 45678889988 99999999 8899999999999999999988764322 24554 45689999999999999999
Q ss_pred EEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640 334 ARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411 (616)
Q Consensus 334 i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (616)
+++||..++. .+..+.+|...|.+++|+|++++|++|+.|++|++||++... ....+..+.+|..
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-------------~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------------EYECVSVLNSHTQ 151 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-------------CEEEEEEECCCCS
T ss_pred EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-------------CeEEEEEecCcCC
Confidence 9999998764 577889999999999999999999999999999999997321 2234567788999
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 489 (616)
.|.+++|+|++.+|++++.|+.|++||.+++. +...+.+|...|.+++|+|++++|++++.|++|++|+.........
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 99999999999999999999999999998875 4577889999999999999999999999999999999632211000
Q ss_pred EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCcEEEe
Q psy3640 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568 (616)
Q Consensus 490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw 568 (616)
+ .....+. ...++..+.+ |...|.+++|+|++..|++++.|+.|++|
T Consensus 232 -----------~------------~~~~~~~---------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw 279 (345)
T 3fm0_A 232 -----------V------------ACSGSDP---------SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279 (345)
T ss_dssp -----------C------------CCC---C---------EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred -----------c------------eeeccCC---------ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence 0 0000000 0233344444 88999999999999999999999999999
Q ss_pred cCCcCee---------eeEeccCcccEEEEEEeeCC-CEEEEeeCCCcEEEcccCCC
Q psy3640 569 STESGEC---------IQVLKAHEDDVFSCGFNYNG-DTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 569 d~~~~~~---------~~~~~~h~~~V~~l~~s~~~-~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+...+.. .....+|.+.|++++|+|++ .+||+|+.||+|++|++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 9876531 22346899999999999998 59999999999999999875
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-41 Score=354.77 Aligned_cols=343 Identities=24% Similarity=0.450 Sum_probs=285.8
Q ss_pred hheecccCCcce-EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640 179 KFKMLKSHLLPL-TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI 257 (616)
Q Consensus 179 ~~~~l~~h~~~i-~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~ 257 (616)
....+.+|...+ +++.+ ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|++++.+++++.||+|++||+
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 346789999885 66666 568999999999999999999999999999999999999999997889999999999999
Q ss_pred CCCceEEEeeCCCCcEEEEEEeC-CCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcE
Q psy3640 258 KSGHEICTYRGHQNVVYAVAFSE-PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 258 ~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i 334 (616)
.+++.+..+.+|...|.+++|++ +++.++++++.|+.|++||+.++........... .+...|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------------- 257 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE------------- 257 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG-------------
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC-------------
Confidence 99999999999999999999985 5678999999999999999998765543221110 0111111
Q ss_pred EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
........+.+|...+.++ +++++++++|+.||.|++||++ ....+..+.+|...+.
T Consensus 258 -----~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~----------------~~~~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 258 -----ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA----------------QMKCLYILSGHTDRIY 314 (464)
T ss_dssp -----GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCEE
T ss_pred -----CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEecCCCCCEE
Confidence 1223456677888998887 5678999999999999999998 7778888999999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 494 (616)
+++|+|+++.+++|+.||.|++||+++++++..+.+|...|.+++|+ +.++++++.||.|++||+.+...
T Consensus 315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~-------- 384 (464)
T 3v7d_B 315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR-------- 384 (464)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--------
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce--------
Confidence 99999999999999999999999999999999999999999999997 57999999999999999876311
Q ss_pred CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574 (616)
Q Consensus 495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 574 (616)
... ..|...+..++|+|++++|++|+ ||.|++||+++++
T Consensus 385 --------------------------------------~~~--~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 385 --------------------------------------KFS--YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp --------------------------------------EEE--EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred --------------------------------------eee--ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 111 12556778889999999999998 8999999999999
Q ss_pred eeeE-eccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 575 CIQV-LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 575 ~~~~-~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
.+.. +.+|.+.|.+++|+ +..++++++.||.+.+|-
T Consensus 424 ~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9975 67889999999997 445555666777666554
No 38
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.5e-41 Score=332.31 Aligned_cols=312 Identities=24% Similarity=0.338 Sum_probs=246.2
Q ss_pred CCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCC--ceEEEe-eC-CCCcEEEEEEeCCCCCEEEEEECC
Q psy3640 217 KSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSG--HEICTY-RG-HQNVVYAVAFSEPYGDKILTGSFD 292 (616)
Q Consensus 217 ~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~--~~~~~~-~~-h~~~V~~l~~~~~~~~~l~s~s~d 292 (616)
.+.+.+..+.+|..+|.+++|+++ .+++++.|++|++||+.++ +....+ .+ |...|.+++|+ |++++|++++.|
T Consensus 2 ~~~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D 79 (330)
T 2hes_X 2 ASINLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFD 79 (330)
T ss_dssp -CCEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETT
T ss_pred cccccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCC
Confidence 345678899999999999999988 6669999999999999876 445556 44 99999999999 789999999999
Q ss_pred CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372 (616)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~ 372 (616)
++|++||...... .....+.+..+.+|...|.+++|+|++++|++|+.
T Consensus 80 ~~v~iw~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 80 STVSIWAKEESAD--------------------------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp SCEEEEEC---------------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred CcEEEEEcccCcC--------------------------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 9999999753210 00123456677889999999999999999999999
Q ss_pred CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEEEEeec
Q psy3640 373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM--CCFYTLKN 450 (616)
Q Consensus 373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 450 (616)
|++|++||++... .....+..+.+|...|.+++|+|++.+|++++.|+.|++||..++ +++..+.+
T Consensus 128 D~~v~iwd~~~~~------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~ 195 (330)
T 2hes_X 128 DKSVWIWETDESG------------EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195 (330)
T ss_dssp TSCEEEEECCTTC------------CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred CCEEEEEeccCCC------------CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC
Confidence 9999999985210 023456778899999999999999999999999999999998876 67888999
Q ss_pred CCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 451 HEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG 528 (616)
Q Consensus 451 ~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 528 (616)
|...|.+++|+|+ +.+|++++.|++|++|++...... .. . .
T Consensus 196 h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~--------~~-~------------------------~---- 238 (330)
T 2hes_X 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED--------DQ-Q------------------------E---- 238 (330)
T ss_dssp CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT--------SC-E------------------------E----
T ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc--------cc-c------------------------e----
Confidence 9999999999998 678999999999999998542100 00 0 0
Q ss_pred CceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe--eee-EeccCcc-cEEEEEEee--CCCEEEEe
Q psy3640 529 GAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE--CIQ-VLKAHED-DVFSCGFNY--NGDTIITA 601 (616)
Q Consensus 529 ~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~h~~-~V~~l~~s~--~~~~l~t~ 601 (616)
......+.+ |...|.+++|++++ +|++++.||.|++|+..+++ .+. .+.+|.. .|.+++|+| ++++|++|
T Consensus 239 --~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 239 --WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp --EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred --eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 122333444 88999999999765 89999999999999998874 333 3467887 899999999 68999999
Q ss_pred eCCCcEEEcccCC
Q psy3640 602 SKDNTCCIWRSMN 614 (616)
Q Consensus 602 s~Dg~i~vW~~~~ 614 (616)
+.||+|++|++..
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999865
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-43 Score=364.72 Aligned_cols=337 Identities=15% Similarity=0.239 Sum_probs=276.7
Q ss_pred CCcceEEEEECCCCC-EEEEE----------ECCCcEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCE-EEEECCC
Q psy3640 186 HLLPLTNITFDKFGT-RCLTG----------SYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYGC-LTGSYDR 250 (616)
Q Consensus 186 h~~~i~~v~~s~~g~-~lasg----------s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~ 250 (616)
+..+|.+++|+|+|+ +||+| +.||.|+|||+.++. .+.. ..|...|.+++|+|++.+ ++++.|+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 445799999999997 99999 899999999999876 3333 358999999999999985 4888999
Q ss_pred cEEEEeCCC----CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE
Q psy3640 251 TCKLWDIKS----GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC 326 (616)
Q Consensus 251 ~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~ 326 (616)
.|++||+.+ .+.+..+.+|...|.+++|+|.+++++++++.|+.|++||+.+++.... .
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-------------~---- 152 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-------------N---- 152 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT-------------T----
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc-------------c----
Confidence 999999988 4588889999999999999943488999999999999999876651100 0
Q ss_pred EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
. ..........|...|.+++|+|+ +.++++++.||.|++||++ .......
T Consensus 153 -------~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----------------~~~~~~~ 203 (416)
T 2pm9_A 153 -------Y------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----------------AKKEVIH 203 (416)
T ss_dssp -------C------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----------------TTEEEEE
T ss_pred -------c------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----------------CCCcceE
Confidence 0 00011123468889999999998 7899999999999999997 5556666
Q ss_pred EecC------ccceeEEEEccCC-CEEEEEeCCC---cEEEEeCCCC-eEEEEee-cCCCCEEEEEEcC-CCCEEEEEeC
Q psy3640 406 LTGH------SQEISNCLFNFSN-SMIASSSLDG---TAKLWDVRTM-CCFYTLK-NHEDEVLDIAFDY-SGSKLATASS 472 (616)
Q Consensus 406 ~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~~~~~ 472 (616)
+..+ ...+.+++|+|++ .++++++.|+ .|++||++++ .....+. .|...|.+++|+| ++.+|++++.
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence 6665 7889999999997 6999999998 9999999986 6677777 8899999999999 8899999999
Q ss_pred CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640 473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT 552 (616)
Q Consensus 473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 552 (616)
||.|++||+.+. +.+..+.+|...|++++|+|+
T Consensus 284 dg~v~~wd~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~s~~ 316 (416)
T 2pm9_A 284 DNTVLLWNPESA-----------------------------------------------EQLSQFPARGNWCFKTKFAPE 316 (416)
T ss_dssp SSEEEEECSSSC-----------------------------------------------CEEEEEECSSSCCCCEEECTT
T ss_pred CCCEEEeeCCCC-----------------------------------------------ccceeecCCCCceEEEEECCC
Confidence 999999988653 334456678899999999999
Q ss_pred C-CEEEEEECCCcEEEecCCcCeeeeEecc-----------------------------------CcccEEEEEEeeCCC
Q psy3640 553 G-KLVLSGSQDTTCRLWSTESGECIQVLKA-----------------------------------HEDDVFSCGFNYNGD 596 (616)
Q Consensus 553 g-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------------h~~~V~~l~~s~~~~ 596 (616)
+ ++|++++.||.|++|++.++........ |..++.+++|+|+|+
T Consensus 317 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 396 (416)
T 2pm9_A 317 APDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK 396 (416)
T ss_dssp CTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred CCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe
Confidence 8 7999999999999999987764432211 667788999999999
Q ss_pred EEEEeeCCCcEEEcccCCCC
Q psy3640 597 TIITASKDNTCCIWRSMNRD 616 (616)
Q Consensus 597 ~l~t~s~Dg~i~vW~~~~~e 616 (616)
+|++++.||+|+||++.+++
T Consensus 397 ~la~~~~d~~v~~w~~~~~~ 416 (416)
T 2pm9_A 397 LVQITPDGKGVSITNPKISG 416 (416)
T ss_dssp EECBCTTSSCBCCBCCCCC-
T ss_pred EEEEeCCCCeEEEEEeccCC
Confidence 99999999999999998764
No 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-40 Score=340.23 Aligned_cols=293 Identities=25% Similarity=0.442 Sum_probs=253.7
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCC------------------cEEEEEEcCCCCEE-E
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQN------------------VVYAVAFSEPYGCL-T 245 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~------------------~I~~l~fs~~~~ll-s 245 (616)
+|...|++++|+|+|++||+|+ +++++||++.+++.+..+..|.. .|.+++|+|+++++ +
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999987 68999999999999888876542 49999999999855 8
Q ss_pred EECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--eeeEEEcC-CC
Q psy3640 246 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--SAEVTFSP-DQ 322 (616)
Q Consensus 246 ~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~-~~ 322 (616)
++.|++|++||+.+++.+..+.+|...|.+++|+ |+++.|++++.|++|++||+.++++...+..+ ...++++| ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999 88999999999999999999999888776543 34568999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEe-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 323 STFCSCSMDHTARIFNTNSGQEMHTL-------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 323 ~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
.++++++.||.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.|+.|++||++....... ..
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~----~~ 295 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD----SK 295 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc----cc
Confidence 99999999999999999999887776 57899999999999999999999999999999974321110 00
Q ss_pred cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC------CCCEEEE
Q psy3640 396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY------SGSKLAT 469 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~------~~~~l~~ 469 (616)
..........+.+|...|.++++++++.++++|+.|+.|++||.++++.+..+.+|...|.+++|++ ++++|++
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 1112345667789999999999999999999999999999999999999999999999999999986 6789999
Q ss_pred EeCCCcEEEEecCC
Q psy3640 470 ASSDQTANLWTVGG 483 (616)
Q Consensus 470 ~~~dg~i~iwd~~~ 483 (616)
++.||+|++|++..
T Consensus 376 gs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 376 GSGDCKARIWKYKK 389 (393)
T ss_dssp EETTSEEEEEEEEE
T ss_pred ECCCCcEEECcccc
Confidence 99999999999854
No 41
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.7e-41 Score=336.00 Aligned_cols=289 Identities=26% Similarity=0.400 Sum_probs=244.7
Q ss_pred hhhhhheecccCCcceEEEEE-----CC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeccCCcEEEEEEcCCC
Q psy3640 175 QRYEKFKMLKSHLLPLTNITF-----DK-FGTRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPY 241 (616)
Q Consensus 175 ~~~~~~~~l~~h~~~i~~v~~-----s~-~g~~lasgs~dg~i~iwd~~~~-------~~~~~~~~h~~~I~~l~fs~~~ 241 (616)
..+.+...+++|..+|++++| ++ ++++||+|+.|++|++||+.++ .....+.+|...|.+++|+|++
T Consensus 9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 345567789999999999999 77 9999999999999999998753 4567889999999999999999
Q ss_pred CEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---ec---ee
Q psy3640 242 GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GH---SA 314 (616)
Q Consensus 242 ~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~---~~ 314 (616)
.++ +++.|++|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|++|++||+... ...... +| ..
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 855 99999999999999999999999999999999999 88999999999999999999743 332222 33 34
Q ss_pred eEEEcCCC----------CEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccc
Q psy3640 315 EVTFSPDQ----------STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ 384 (616)
Q Consensus 315 ~v~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~ 384 (616)
.++|+|++ .++++++.||.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|++||+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~- 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN- 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC-
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC-
Confidence 56788876 7999999999999999 45677788899999999999999999999999999999999852
Q ss_pred cCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE--Eee-----------cC
Q psy3640 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY--TLK-----------NH 451 (616)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~ 451 (616)
...+...+ .+...|.+++|+|++.+++++ .|+.+++||+.+++... .+. +|
T Consensus 245 --------------~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 245 --------------LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp --------------CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred --------------Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 12222222 345579999999999887755 57789999998765433 333 57
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
...|.+++|+|++++|++|+.||.|++|++.+
T Consensus 309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 78899999999999999999999999999864
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=336.07 Aligned_cols=286 Identities=15% Similarity=0.138 Sum_probs=225.2
Q ss_pred ceeeEEEcCCCCEEEEEeCCCcEEEEECC-------C----CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640 312 HSAEVTFSPDQSTFCSCSMDHTARIFNTN-------S----GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380 (616)
Q Consensus 312 ~~~~v~~~~~~~~l~~~~~dg~i~i~d~~-------~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd 380 (616)
+...++|+|||.++++++ |+++++||.. . .........+...|.+++|+|++ .+++|+.||+|++||
T Consensus 32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd 109 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE 109 (344)
T ss_dssp EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence 344555666666655554 4444444411 0 11112223366789999999985 788999999999999
Q ss_pred cccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640 381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 460 (616)
+..... .........+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|
T Consensus 110 ~~~~~~------------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 110 LDENET------------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp ECTTSS------------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred ccCCCc------------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence 973210 11122345589999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEee
Q psy3640 461 DYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFY 538 (616)
Q Consensus 461 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 538 (616)
+|++. ++++++.|++|++||+........... ......+.+++|+|+ +.++++|+.||.|++||++++ +.+..+.
T Consensus 178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~ 254 (344)
T 4gqb_B 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSA 254 (344)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEE
T ss_pred cCCCCCceeeeccccccccccccccceeeeeec--ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEc
Confidence 99885 789999999999999987644332211 122234778999985 568899999999999999884 6778899
Q ss_pred ccccCEEEEEEecCC-CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCC-EEEEeeCCCcEEEcccCCC
Q psy3640 539 GHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGD-TIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 539 ~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~t~s~Dg~i~vW~~~~~ 615 (616)
+|...|++++|+|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++ +|+++|.||+|++|++.++
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999999999998 58999999999999999998865 5789999999999999986 6779999999999999764
No 43
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-40 Score=339.02 Aligned_cols=293 Identities=24% Similarity=0.415 Sum_probs=251.8
Q ss_pred CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec---------------------eeeEEEcCCCCEEE
Q psy3640 268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH---------------------SAEVTFSPDQSTFC 326 (616)
Q Consensus 268 ~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------------~~~v~~~~~~~~l~ 326 (616)
+|...|.+++|+ |++++|++++ ++.+++|++.+++.+..+..+ ...++|+|++++++
T Consensus 62 ~h~~~V~~v~fs-pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFS-NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEEC-TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEEC-CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 599999999999 8899999976 689999999999888777543 34578999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (616)
+|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++ .......+
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~----------------~~~~~~~~ 203 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR----------------TGQCSLTL 203 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------------TTEEEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC----------------CCeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999997 44444444
Q ss_pred ecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640 407 TGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL-------KNHEDEVLDIAFDYSGSKLATASSDQTANL 478 (616)
Q Consensus 407 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i 478 (616)
. +...+.+++++| ++.++++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.|+.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 3 566789999999 8999999999999999999999887776 568899999999999999999999999999
Q ss_pred EecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 479 WTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 479 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
||+........... .....+...+.+|...|.+++|+|++++|++
T Consensus 283 wd~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 327 (393)
T 1erj_A 283 WNLQNANNKSDSKT-----------------------------------PNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327 (393)
T ss_dssp EEC--------------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred EECCCCCCcccccC-----------------------------------CCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence 99976422110000 0002344566789999999999999999999
Q ss_pred EECCCcEEEecCCcCeeeeEeccCcccEEEEEEee------CCCEEEEeeCCCcEEEcccCC
Q psy3640 559 GSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY------NGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 559 ~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~------~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
|+.|+.|++||..+++++..+.+|.+.|.+++|++ ++++|+||+.||+|++|++..
T Consensus 328 gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999999999999999999999999999986 678999999999999999864
No 44
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.1e-40 Score=326.20 Aligned_cols=289 Identities=33% Similarity=0.543 Sum_probs=253.6
Q ss_pred ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF 337 (616)
Q Consensus 261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~ 337 (616)
.....+.+|...|++++|+ |+++++++++.||.|++|+..+++....+.+|... ++|+|+++++++++.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 4457788999999999999 88999999999999999999999999888877654 5899999999999999999999
Q ss_pred ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417 (616)
Q Consensus 338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 417 (616)
|+.+++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++ .......+..|..++.+++
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----------------TGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----------------TCCEEEEECCCSSCEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----------------CCEEEEEecCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999997 6677888889999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCC
Q psy3640 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSN 496 (616)
Q Consensus 418 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 496 (616)
|+|+++++++++.||.|++||+++++.+..+. .+...+..++|+|+++++++++.|+.|++||+...
T Consensus 157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------ 224 (312)
T 4ery_A 157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------------ 224 (312)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------------
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------------
Confidence 99999999999999999999999988777664 34567888888888888888888888888887654
Q ss_pred CeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE---EEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 497 EVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV---SKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 497 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v---~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
+....+.+|...+ ......+++++|++|+.||.|++||+.++
T Consensus 225 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 225 -----------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp -----------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred -----------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 2233334444332 22223467889999999999999999999
Q ss_pred eeeeEeccCcccEEEEEEeeCCCEEEEee--CCCcEEEcccC
Q psy3640 574 ECIQVLKAHEDDVFSCGFNYNGDTIITAS--KDNTCCIWRSM 613 (616)
Q Consensus 574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s--~Dg~i~vW~~~ 613 (616)
+.+..+.+|.+.|.+++|+|++++|++++ .|++|++|+..
T Consensus 270 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999999999999999999997 69999999974
No 45
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=329.92 Aligned_cols=295 Identities=27% Similarity=0.373 Sum_probs=237.6
Q ss_pred hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEE-ec-cCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTY-RG-HQNVVYAVAFSEPYGCL-TGSYDRT 251 (616)
Q Consensus 177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~-~~-h~~~I~~l~fs~~~~ll-s~s~d~~ 251 (616)
+++.+.+++|..+|.+++|+|+ +||+|+.||+|++||+.++ .....+ .+ |...|.+++|+|++.++ +++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3456789999999999999997 9999999999999999875 445556 44 99999999999999955 8999999
Q ss_pred EEEEeCCC-------CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc----ceeEEeeecee---eEE
Q psy3640 252 CKLWDIKS-------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQTYRGHSA---EVT 317 (616)
Q Consensus 252 I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~---~v~ 317 (616)
|++||+.. .+.+..+.+|...|.+++|+ |++++|++++.|++|++||+... +++..+.+|.. .++
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 99999853 35677889999999999999 88999999999999999999432 45667777754 458
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640 318 FSPDQSTFCSCSMDHTARIFNTNSG--QEMHTLKAHTGPVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
|+|++.+|++++.|+.|++||..++ +.+..+.+|...|.+++|+|+ +..|++|+.|++|++||+........
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~---- 236 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ---- 236 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC----
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc----
Confidence 9999999999999999999998876 578889999999999999998 67999999999999999874311100
Q ss_pred cccccCCcceEEEec-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EEEE-eecCCC-CEEEEEEcC--CCCE
Q psy3640 394 STYRASHKPIHILTG-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC--CFYT-LKNHED-EVLDIAFDY--SGSK 466 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~~~--~~~~ 466 (616)
........+.. |...|.+++|++++ .+++++.||.|++||..++. .... ...|.. .|.+++|+| ++++
T Consensus 237 ----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~ 311 (330)
T 2hes_X 237 ----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI 311 (330)
T ss_dssp ----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred ----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence 00122333444 88999999999655 89999999999999998874 3333 356776 899999999 6899
Q ss_pred EEEEeCCCcEEEEecCC
Q psy3640 467 LATASSDQTANLWTVGG 483 (616)
Q Consensus 467 l~~~~~dg~i~iwd~~~ 483 (616)
|++++.||.|++|++..
T Consensus 312 las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 312 LATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSEEEEEEC--
T ss_pred EEEecCCCcEEEEEecc
Confidence 99999999999999864
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-40 Score=331.80 Aligned_cols=288 Identities=20% Similarity=0.332 Sum_probs=242.7
Q ss_pred eEEEeeCCCCcEEEEEE-----eCCCCCEEEEEECCCeEEEEeCCCc-------ceeEEeeeceee---EEEcCCCCEEE
Q psy3640 262 EICTYRGHQNVVYAVAF-----SEPYGDKILTGSFDKTLKLWASAKE-------ECIQTYRGHSAE---VTFSPDQSTFC 326 (616)
Q Consensus 262 ~~~~~~~h~~~V~~l~~-----~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~---v~~~~~~~~l~ 326 (616)
....+.+|.+.|++++| +++++.+|++|+.|++|++||+.+. .....+.+|... ++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45678999999999999 6558999999999999999998754 345667777654 58999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (616)
+++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.. ......
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-----------------~~~~~~ 155 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-----------------ECKFSS 155 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-----------------CEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-----------------Cceeee
Confidence 999999999999999999999999999999999999999999999999999999851 111111
Q ss_pred ---ecCccceeEEEEccCC----------CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640 407 ---TGHSQEISNCLFNFSN----------SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 407 ---~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 473 (616)
..|...+.+++|+|++ .++++++.||.|++|| ........+..|...|.+++|+|++++|++++.|
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d 234 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence 2678889999999987 7999999999999999 4567778888999999999999999999999999
Q ss_pred CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg 553 (616)
|.|++||+...... ...+ .+...|.+++|+|++
T Consensus 235 g~v~iwd~~~~~~~----------------------------------------------~~~~-~~~~~v~~v~~sp~~ 267 (343)
T 2xzm_R 235 KKLLIWDILNLTYP----------------------------------------------QREF-DAGSTINQIAFNPKL 267 (343)
T ss_dssp CEEEEEESSCCSSC----------------------------------------------SEEE-ECSSCEEEEEECSSS
T ss_pred CeEEEEECCCCccc----------------------------------------------ceee-cCCCcEEEEEECCCC
Confidence 99999998432110 0111 234569999999999
Q ss_pred CEEEEEECCCcEEEecCCcCeeee--Eec-----------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 554 KLVLSGSQDTTCRLWSTESGECIQ--VLK-----------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 554 ~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
++++++ .|+.|++|++.+++... .+. +|...|.+++|+|+|++|++|+.||+|++|++.+.
T Consensus 268 ~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 268 QWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 887755 57789999998876544 443 68889999999999999999999999999998753
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-41 Score=344.41 Aligned_cols=322 Identities=17% Similarity=0.243 Sum_probs=275.3
Q ss_pred EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350 (616)
Q Consensus 273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 350 (616)
+++++|+ |+++++++++.|+.+++||..+++....+..+.. ...++|+++++++++.||.|++||+.+++....+..
T Consensus 59 ~~~~~~s-~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFE-KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEE-EEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeee-ecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 4578899 8899999999999999999998877666555432 236899999999999999999999999999888889
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL 430 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 430 (616)
|...|.+++|+|++++|++++.|+.|++||+. .......+.+|...|.+++|+|+++.+++++.
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 201 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK----------------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASL 201 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------------TCCCCEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCC----------------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC
Confidence 99999999999999999999999999999998 66677888999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeec---CCCCEEEEE---------------------EcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640 431 DGTAKLWDVRTMCCFYTLKN---HEDEVLDIA---------------------FDYSGSKLATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 431 dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~---------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~ 486 (616)
||.|++||+++++.+..+.. +...+.+++ |+|+++++++++.||.|++||+.....
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence 99999999999999988875 334455544 578899999999999999999988755
Q ss_pred eeeEEeccCCCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCc
Q psy3640 487 LLQTFYGHSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTT 564 (616)
Q Consensus 487 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~ 564 (616)
.......+. ..+.+++|+|++. +|++|+.||.|++||+.+....+..+.. |...|+++. +|++++|++++.||.
T Consensus 282 ~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 282 TIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTS 357 (420)
T ss_dssp EEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEE
T ss_pred eEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCcc
Confidence 554443333 4588999999999 9999999999999999886555666666 667788885 467889999999999
Q ss_pred EEEecCCcC---------eeeeEeccCcccEEEEEEeeCCC---EEEEeeCCCcEEEcccCCC
Q psy3640 565 CRLWSTESG---------ECIQVLKAHEDDVFSCGFNYNGD---TIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 565 i~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~~~~---~l~t~s~Dg~i~vW~~~~~ 615 (616)
|++|++... .....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|++.++
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~ 420 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP 420 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence 999998773 22334567889999999999999 8888889999999999764
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-40 Score=343.77 Aligned_cols=343 Identities=15% Similarity=0.192 Sum_probs=287.9
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEEeCCCCceEEEe
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iwd~~~~~~~~~~ 266 (616)
..+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++.+ ++++.|+.|++||+.+++....+
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 44568999999999999999999999999988776666666 45556678999885 48999999999999999999888
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQ 343 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~~~~ 343 (616)
.+|...|.+++|+ |++++|++++.|+.|++||+.+++.+..+.+|... ++|+|++..+++++.||.|++||+++++
T Consensus 136 ~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 214 (420)
T 3vl1_A 136 QAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT 214 (420)
T ss_dssp TSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred ccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence 9999999999999 78999999999999999999999999999877654 5899999999999999999999999999
Q ss_pred eeEEeec---CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640 344 EMHTLKA---HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420 (616)
Q Consensus 344 ~~~~~~~---~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 420 (616)
.+..+.. |...+.++++.|.+... ....+...+.+++|+|
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------------------LHEISTSKKNNLEFGT 257 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSS-------------------------------------CGGGCCCCCCTTCSSC
T ss_pred eeEEeecCCCCCCCccEEEEecCCcce-------------------------------------eeecccCcccceEEcC
Confidence 9988874 56778888887653211 1123456678889999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCe
Q psy3640 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498 (616)
Q Consensus 421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 498 (616)
+++++++++.||.|++||+++++....+. .|...|.+++|+|++. +|++++.||.|++||+.+.......+..+..
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-- 335 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG-- 335 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT--
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC--
Confidence 99999999999999999999998777765 4788999999999999 9999999999999999887555555555332
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce--------EEeEEeeccccCEEEEEEecCCC---EEEEEECCCcEEE
Q psy3640 499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV--------ELLQTFYGHSNEVSKVSFHPTGK---LVLSGSQDTTCRL 567 (616)
Q Consensus 499 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~h~~~v~~l~~spdg~---~l~s~s~dg~i~i 567 (616)
..+..+. .+++++|++++.|+.|++|++.... .....+..|.+.|.+++|+|+++ .+++++.+|.+.+
T Consensus 336 ~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~ 414 (420)
T 3vl1_A 336 TPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL 414 (420)
T ss_dssp SCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred CCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence 2355554 4578899999999999999987521 11234567889999999999999 7888888999999
Q ss_pred ecCCc
Q psy3640 568 WSTES 572 (616)
Q Consensus 568 wd~~~ 572 (616)
|++++
T Consensus 415 ~~~~~ 419 (420)
T 3vl1_A 415 YNLSN 419 (420)
T ss_dssp EESCC
T ss_pred EeccC
Confidence 99864
No 49
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-38 Score=318.51 Aligned_cols=292 Identities=26% Similarity=0.404 Sum_probs=251.7
Q ss_pred hhhhhhheecccCCcceEEEEECCC-CCEEEEEECCCcEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCCEE-EE
Q psy3640 174 AQRYEKFKMLKSHLLPLTNITFDKF-GTRCLTGSYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFSEPYGCL-TG 246 (616)
Q Consensus 174 ~~~~~~~~~l~~h~~~i~~v~~s~~-g~~lasgs~dg~i~iwd~~~~-----~~~~~~~~h~~~I~~l~fs~~~~ll-s~ 246 (616)
.++..+..+|+||.++|++|+|+|+ +++||||+.||+|+|||+.+. .+...+.+|...|.+++|+|++.++ ++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3445566789999999999999998 689999999999999998765 3567889999999999999999955 99
Q ss_pred ECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE-eeece---eeEEEcCC-
Q psy3640 247 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-YRGHS---AEVTFSPD- 321 (616)
Q Consensus 247 s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~---~~v~~~~~- 321 (616)
+.|+.|++|+............+...+....++ +++..+++++.|+.+++||......... ..+|. ..++++++
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 999999999999999999999999999999998 8899999999999999999887654433 33333 34567765
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640 322 -QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 322 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
...+++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.||.|++||++ ..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~----------------~~ 247 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----------------EG 247 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT----------------TT
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec----------------cC
Confidence 4578899999999999999999999999999999999999999999999999999999997 55
Q ss_pred cceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee---------cCCCCEEEEEEcCCCCEEEEEe
Q psy3640 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK---------NHEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~l~~~~ 471 (616)
.++..+.. ...+..++|+|++.++ +++.|+.|++||++++..+..+. .|...|++++|+|++++|++++
T Consensus 248 ~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 248 KHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp EEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred ceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 55655554 4679999999987655 55568999999999987776654 5778999999999999999999
Q ss_pred CCCcEEEEecCCc
Q psy3640 472 SDQTANLWTVGGA 484 (616)
Q Consensus 472 ~dg~i~iwd~~~~ 484 (616)
.||.|++||+.++
T Consensus 326 ~Dg~v~iW~~~tG 338 (340)
T 4aow_A 326 TDNLVRVWQVTIG 338 (340)
T ss_dssp TTSCEEEEEEEC-
T ss_pred CCCEEEEEeCCCc
Confidence 9999999999765
No 50
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=320.25 Aligned_cols=288 Identities=18% Similarity=0.277 Sum_probs=262.2
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEEe
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLWD 256 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iwd 256 (616)
.....+.+|..+|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+ ++++.|+.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 344668999999999999999999999999999999999999999999999999999999999985 5899999999999
Q ss_pred CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC-----CeEEEEeCCCccee-----------EEeee-----ceee
Q psy3640 257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD-----KTLKLWASAKEECI-----------QTYRG-----HSAE 315 (616)
Q Consensus 257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~-----------~~~~~-----~~~~ 315 (616)
+.+++.+..+. |...|.+++|+ +++..+++++.+ +.|++||+..+... ..+.. ....
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV 180 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence 99999998888 88999999999 889999999999 99999998776432 22222 3445
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640 316 VTFSPDQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394 (616)
Q Consensus 316 v~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 394 (616)
++|+|+++.+++++.+|.|++||+.+ ++.+..+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------ 248 (369)
T 3zwl_B 181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS------------ 248 (369)
T ss_dssp EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT------------
T ss_pred EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC------------
Confidence 68999999999999999999999998 78888999999999999999999999999999999999997
Q ss_pred ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640 395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG--------------TAKLWDVRTMCCFYTLKNHEDEVLDIAF 460 (616)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 460 (616)
.......+. +...+..++|+|++..+++++.++ .+++||..+++.+..+..|...|.+++|
T Consensus 249 ----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 323 (369)
T 3zwl_B 249 ----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI 323 (369)
T ss_dssp ----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred ----CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence 555555555 778899999999999999999988 8999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 461 DYSGSKLATASSDQTANLWTVGGA 484 (616)
Q Consensus 461 ~~~~~~l~~~~~dg~i~iwd~~~~ 484 (616)
+|++++|++++.||.|++|++...
T Consensus 324 s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 324 SPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp CTTSSEEEEEETTSEEEEEEECHH
T ss_pred CCCCCEEEEEcCCCeEEEEECccc
Confidence 999999999999999999999764
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-38 Score=316.75 Aligned_cols=293 Identities=25% Similarity=0.368 Sum_probs=249.4
Q ss_pred CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-----eeEEeeeceee---EEEcCCCCEEEEEeC
Q psy3640 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAE---VTFSPDQSTFCSCSM 330 (616)
Q Consensus 259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~~~~~---v~~~~~~~~l~~~~~ 330 (616)
+.+...+|++|.+.|++++|+|.++++|+||+.|++|++||+.+.+ +...+.+|... ++|+|+++++++++.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 3345568999999999999995567999999999999999987654 45566666554 589999999999999
Q ss_pred CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
|+.|++|+............+...+....++++++.+++++.|+.+++||... .........+|.
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~---------------~~~~~~~~~~~~ 171 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG---------------VCKYTVQDESHS 171 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------------CEEEEECSSSCS
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC---------------CceEEEEecccc
Confidence 99999999999999988888999999999999999999999999999999862 223334456788
Q ss_pred cceeEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeee
Q psy3640 411 QEISNCLFNFSN--SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL 488 (616)
Q Consensus 411 ~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 488 (616)
..+..++|++++ .++++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++.||.|++||+...
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---- 247 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---- 247 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT----
T ss_pred CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC----
Confidence 899999998764 57889999999999999999999999999999999999999999999999999999998764
Q ss_pred eEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEe
Q psy3640 489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568 (616)
Q Consensus 489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw 568 (616)
..+..+. +...|.+++|+|++.+ ++++.|+.|++|
T Consensus 248 -------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iw 282 (340)
T 4aow_A 248 -------------------------------------------KHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIW 282 (340)
T ss_dssp -------------------------------------------EEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEE
T ss_pred -------------------------------------------ceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEE
Confidence 1222222 3467899999998754 456678999999
Q ss_pred cCCcCeeeeEec---------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 569 STESGECIQVLK---------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 569 d~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
|++++..+..+. +|...|++++|+|++++|++|+.||+|+|||+.+.
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999887776553 68889999999999999999999999999999874
No 52
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=343.05 Aligned_cols=363 Identities=16% Similarity=0.219 Sum_probs=285.4
Q ss_pred EECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcC-CCC-EEEEECCCcEEEEeCCC---Cc---eEE
Q psy3640 194 TFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSE-PYG-CLTGSYDRTCKLWDIKS---GH---EIC 264 (616)
Q Consensus 194 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~-~~~-lls~s~d~~I~iwd~~~---~~---~~~ 264 (616)
.|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++. +++++.||+|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 3788888888766 387 667888888 89999999999999 887 55999999999999876 43 233
Q ss_pred EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC---CcceeEEeeece---------------eeEE--EcCCCCE
Q psy3640 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA---KEECIQTYRGHS---------------AEVT--FSPDQST 324 (616)
Q Consensus 265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~---------------~~v~--~~~~~~~ 324 (616)
.+ +|...|.+++|+ ++++.|++++.||.|++||+. +++......++. ..+. +++++..
T Consensus 107 ~~-~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 107 TY-DCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp EE-ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred ec-cCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 44 499999999999 789999999999999999995 565555444331 1112 5678999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640 325 FCSCSMDHTARIFNTNSGQEMHTLKA--HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402 (616)
Q Consensus 325 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 402 (616)
+++++.||.|++||+++++.+..+.. |...|.+++|+|++++|++|+.||.|++||++ ...+
T Consensus 185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----------------~~~~ 248 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR----------------FNVL 248 (437)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT----------------TTEE
T ss_pred EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC----------------CccE
Confidence 99999999999999999999999988 89999999999999999999999999999998 6666
Q ss_pred eEEEe-cCccceeEEEEc----cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640 403 IHILT-GHSQEISNCLFN----FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477 (616)
Q Consensus 403 ~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~ 477 (616)
+..+. .|...|.+++++ +++.++++|+.||.|++||+++++++..+..|...+..+.|+|+++.+ .+..
T Consensus 249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~-- 322 (437)
T 3gre_A 249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL----EELN-- 322 (437)
T ss_dssp EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG----GGCC--
T ss_pred EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc----ccce--
Confidence 66665 788899999665 457799999999999999999999999999999999988999887655 1111
Q ss_pred EEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccc---cCEEEEEEecCCC
Q psy3640 478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS---NEVSKVSFHPTGK 554 (616)
Q Consensus 478 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---~~v~~l~~spdg~ 554 (616)
+.+ ......|.+++|+ ++++|++|+.|+.|++||+.++ +....+.+|. ..+....+++...
T Consensus 323 -------------~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (437)
T 3gre_A 323 -------------FCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLT 386 (437)
T ss_dssp -------------CCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEE
T ss_pred -------------ecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceE
Confidence 111 1123457788999 7899999999999999999885 4455566653 3456667777765
Q ss_pred EEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeC--CCEEEEeeCCCcEEEcc
Q psy3640 555 LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN--GDTIITASKDNTCCIWR 611 (616)
Q Consensus 555 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~t~s~Dg~i~vW~ 611 (616)
+++.. |+...+........|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 387 ~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 387 MLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 55554 445555666677789999999999998 77999999999999996
No 53
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-40 Score=349.06 Aligned_cols=341 Identities=9% Similarity=0.032 Sum_probs=249.7
Q ss_pred CCcceEEEEECCCC---------CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640 186 HLLPLTNITFDKFG---------TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW 255 (616)
Q Consensus 186 h~~~i~~v~~s~~g---------~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw 255 (616)
+.++|.+|+|+|++ ++||+|+.++.. -..+|++.+ ++++.|++|+||
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW 188 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF 188 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence 68899999999987 799999876420 013577774 489999999999
Q ss_pred eCCCCceE----EEeeCCCCcEEEEEEeCC-----CCCEEEEEECCCeEEEEeCCCcce-----------eEEeeece--
Q psy3640 256 DIKSGHEI----CTYRGHQNVVYAVAFSEP-----YGDKILTGSFDKTLKLWASAKEEC-----------IQTYRGHS-- 313 (616)
Q Consensus 256 d~~~~~~~----~~~~~h~~~V~~l~~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~-- 313 (616)
|+.+++.. ..+.+|.+.|.+++|+|. ++.+||+++.||+|++||+.++.. ...+.+|.
T Consensus 189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~ 268 (524)
T 2j04_B 189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL 268 (524)
T ss_dssp EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence 99887642 446778899999999953 367999999999999999987642 23455554
Q ss_pred -eeEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEeecCCcCEEEE--EEcCCC-CEEEEEECCCcEEEEecccccCCc
Q psy3640 314 -AEVTFSPDQSTFCSCSMDHTARIFNTNSGQ-EMHTLKAHTGPVISL--QFSSDR-NMLITGSFDSSIVVWDIQYQFGTR 388 (616)
Q Consensus 314 -~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l--~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~ 388 (616)
..++|+++ ..|++|+.||+|++||++++. ....+.+|...|.++ +|+|++ ++|++++.|++|++||++
T Consensus 269 v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~------ 341 (524)
T 2j04_B 269 ITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK------ 341 (524)
T ss_dssp EEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG------
T ss_pred EEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC------
Confidence 34578886 489999999999999999764 456788999999999 578887 899999999999999997
Q ss_pred ccccccccccCCcceEEEecCcc--ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE
Q psy3640 389 NAYAESTYRASHKPIHILTGHSQ--EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466 (616)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 466 (616)
.......+.+|.. .+.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|.+++|+|+++.
T Consensus 342 ----------~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 342 ----------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp ----------GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred ----------CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence 4444444555543 4789999999999999999999999999999888889999999999999999999
Q ss_pred EEEEeCCCcEEEEecCCceeeeeEEecc--CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE
Q psy3640 467 LATASSDQTANLWTVGGAVELLQTFYGH--SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544 (616)
Q Consensus 467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 544 (616)
|++|+.||+|++|++... ........ ......+..++|+|++..+.. .. .+.+|+..........+.+|..+|
T Consensus 412 l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V 486 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINI 486 (524)
T ss_dssp CEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSC
T ss_pred EEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceE
Confidence 999999999999998653 21111100 011124678899999985532 22 233443332235677788999999
Q ss_pred EEEEEecCCC---EEEEEECCCcEEEecCC
Q psy3640 545 SKVSFHPTGK---LVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 545 ~~l~~spdg~---~l~s~s~dg~i~iwd~~ 571 (616)
.+++|+|+++ .+|+|+.||.|+||++.
T Consensus 487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 9999999964 99999999999999975
No 54
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-38 Score=325.88 Aligned_cols=288 Identities=18% Similarity=0.227 Sum_probs=259.7
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc------EEEEEeccCCcEEEEEEcCC----C---C-E
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH------EICTYRGHQNVVYAVAFSEP----Y---G-C 243 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~------~~~~~~~h~~~I~~l~fs~~----~---~-l 243 (616)
...+.+.+|..+|++++|+| ++|++|+.||+|++||+.+++ .+..+.+|..+|.+++|+|+ + . +
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 34577899999999999999 899999999999999999988 78899999999999999999 7 6 5
Q ss_pred EEEECCCcEEEEeCCCCce-----EEEeeCC-----CCcEEEEEEeC---CCCCE-EEEEECCCeEEEEeCCC------c
Q psy3640 244 LTGSYDRTCKLWDIKSGHE-----ICTYRGH-----QNVVYAVAFSE---PYGDK-ILTGSFDKTLKLWASAK------E 303 (616)
Q Consensus 244 ls~s~d~~I~iwd~~~~~~-----~~~~~~h-----~~~V~~l~~~~---~~~~~-l~s~s~dg~i~iwd~~~------~ 303 (616)
++++.|+.|++||+.+++. ...+..| ...|.+++|++ ++++. +++++.||.|++||+.+ +
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 5899999999999999987 8889988 59999999983 46788 99999999999999998 7
Q ss_pred ceeE-----Eeee----------ceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec---C---CcCEEEEEEcC
Q psy3640 304 ECIQ-----TYRG----------HSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA---H---TGPVISLQFSS 362 (616)
Q Consensus 304 ~~~~-----~~~~----------~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~l~~~~ 362 (616)
+.+. .+.+ ....++|+|++ .+++++.||.|++||+++++.+..+.. | ...|.+++|+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~ 243 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence 6666 6633 34567899999 999999999999999999999999998 8 99999999999
Q ss_pred CCCEEEEEECC---CcEEEEecccccCCcccccccccccCCcceEEEec-------------CccceeEEEEccCCCEEE
Q psy3640 363 DRNMLITGSFD---SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-------------HSQEISNCLFNFSNSMIA 426 (616)
Q Consensus 363 ~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~ 426 (616)
++++|++++.| |.|++||++ ....+..+.. |...|.+++|+|++++|+
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 307 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETE----------------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 307 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETT----------------TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred CCCEEEEEecCCCCceEEEEECC----------------CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence 99999999999 999999998 6667777777 999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEee------cC---------------CCCEEEEEEcCCC----------CEEEEEeCCCc
Q psy3640 427 SSSLDGTAKLWDVRTMCCFYTLK------NH---------------EDEVLDIAFDYSG----------SKLATASSDQT 475 (616)
Q Consensus 427 ~~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~~~~~----------~~l~~~~~dg~ 475 (616)
+++.||.|++||+++++.+..+. .| ...|.+++|+|++ ++|++++.||.
T Consensus 308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~ 387 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS 387 (397)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence 99999999999999999999999 78 8999999999998 79999999999
Q ss_pred EEEEecCCc
Q psy3640 476 ANLWTVGGA 484 (616)
Q Consensus 476 i~iwd~~~~ 484 (616)
|++|++.++
T Consensus 388 i~iw~~~~g 396 (397)
T 1sq9_A 388 IRWFREAGG 396 (397)
T ss_dssp EEEEEEEC-
T ss_pred EEEEEcCCC
Confidence 999998653
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=312.42 Aligned_cols=298 Identities=19% Similarity=0.275 Sum_probs=255.4
Q ss_pred eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEE
Q psy3640 262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFN 338 (616)
Q Consensus 262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d 338 (616)
....+.+|.+.|++++|+ +++++|++++.||.|++||+.+++.+..+.+|... ++|+|+++++++++.||.|++||
T Consensus 24 ~~~~l~~h~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEECCSSCEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred ccEEEEEeeceEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 345688999999999999 78999999999999999999999999999877654 48999999999999999999999
Q ss_pred CCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEecccccCCcccccccccccCCcceEEEecCcc--
Q psy3640 339 TNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-----SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ-- 411 (616)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 411 (616)
+.+++.+..+. +...+.+++|+|+++++++++.+ +.|++||+.......... .....+...+..|..
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 176 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-----KVSEEPIHKIITHEGLD 176 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-----EECSSCSEEEECCTTCC
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec-----ccccceeeeccCCcCcc
Confidence 99999998888 88999999999999999999999 999999997543221111 112344556666666
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeE
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQT 490 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 490 (616)
.+.+++|+|+++.+++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.|+.|++||+.+....
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--- 253 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL--- 253 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee---
Confidence 899999999999999999999999999999 7888999999999999999999999999999999999998764211
Q ss_pred EeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCC-------
Q psy3640 491 FYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDT------- 563 (616)
Q Consensus 491 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg------- 563 (616)
..+. +...+..++|+|+++++++++.++
T Consensus 254 --------------------------------------------~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 288 (369)
T 3zwl_B 254 --------------------------------------------KKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTT 288 (369)
T ss_dssp --------------------------------------------EEEE-CSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred --------------------------------------------eeec-CCCCceeEEecCCCceEEEeecCCCceEEEE
Confidence 1111 445566666666666666666665
Q ss_pred -------cEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 564 -------TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 564 -------~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
.+++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|++.+
T Consensus 289 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 289 SANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 799999999999999999999999999999999999999999999999864
No 56
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-37 Score=342.75 Aligned_cols=285 Identities=26% Similarity=0.406 Sum_probs=246.5
Q ss_pred hheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640 179 KFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRT 251 (616)
Q Consensus 179 ~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~~-----~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~ 251 (616)
....+++|.+.|++++|+|++ ++|++|+.||+|++||+.+. .....+.+|...|.+++|+|+++++ +++.|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345689999999999999875 79999999999999999763 4567889999999999999999955 9999999
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe---eec---eeeEEEcCCC--C
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGH---SAEVTFSPDQ--S 323 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~---~~~v~~~~~~--~ 323 (616)
|++||+.+++....+.+|...|.+++|+ +++++|++++.|++|++||.......... .+| ...++|+|++ .
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999999999999999999999999999 88999999999999999998655433322 233 3456899986 6
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640 324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403 (616)
Q Consensus 324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 403 (616)
.+++++.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||.|++||++ ....+
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~----------------~~~~~ 596 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA----------------EGKKL 596 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT----------------TTEEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCceE
Confidence 89999999999999999999999999999999999999999999999999999999997 44444
Q ss_pred EEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-------------------CCEEEEEEcCCC
Q psy3640 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE-------------------DEVLDIAFDYSG 464 (616)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~~~~~ 464 (616)
..+. +...+.+++|+|++.++++++ ++.|++||++++..+..+..+. ..+++++|+|+|
T Consensus 597 ~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 597 YSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp ECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred EEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 4443 456799999999998888776 4569999999998887765321 137899999999
Q ss_pred CEEEEEeCCCcEEEEecC
Q psy3640 465 SKLATASSDQTANLWTVG 482 (616)
Q Consensus 465 ~~l~~~~~dg~i~iwd~~ 482 (616)
++|++++.||.|++|++.
T Consensus 675 ~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 675 STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CEEEEEcCCCeEEEEecc
Confidence 999999999999999985
No 57
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-39 Score=336.49 Aligned_cols=349 Identities=9% Similarity=0.108 Sum_probs=274.5
Q ss_pred hhhhhheec-ccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCC---Cc---EEEEEeccCCcEEEEEEcCCCC-EEE
Q psy3640 175 QRYEKFKML-KSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKS---GH---EICTYRGHQNVVYAVAFSEPYG-CLT 245 (616)
Q Consensus 175 ~~~~~~~~l-~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~---~~---~~~~~~~h~~~I~~l~fs~~~~-lls 245 (616)
...+.+..+ .+|..+|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ +|...|.+++|+|++. +++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 344566777 89999999999999 999999999999999999876 43 22233 5999999999999988 559
Q ss_pred EECCCcEEEEeCC---CCceEEEeeC------------CCCcEEEEEEe-CCCCCEEEEEECCCeEEEEeCCCcceeEEe
Q psy3640 246 GSYDRTCKLWDIK---SGHEICTYRG------------HQNVVYAVAFS-EPYGDKILTGSFDKTLKLWASAKEECIQTY 309 (616)
Q Consensus 246 ~s~d~~I~iwd~~---~~~~~~~~~~------------h~~~V~~l~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 309 (616)
++.|++|++||+. +++....+.+ +...+.++.+. .+++.++++++.|+.|++||+++++.+..+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999995 6655544432 44556666632 167899999999999999999999999998
Q ss_pred ee--ce---eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cCCcCEEEEEEcC----CCCEEEEEECCCcEEEE
Q psy3640 310 RG--HS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS----DRNMLITGSFDSSIVVW 379 (616)
Q Consensus 310 ~~--~~---~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~----~~~~l~~g~~dg~i~iw 379 (616)
.+ |. ..++|+|++.++++|+.||.|++||+++++.+..+. .|..+|.+++|+| ++.+|++|+.||.|++|
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 76 44 345899999999999999999999999999998886 7888999996664 67799999999999999
Q ss_pred ecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--CCCCEEE
Q psy3640 380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLD 457 (616)
Q Consensus 380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~ 457 (616)
|++ .......+.+|...+..+.|+|++..+ .+. .+.+ |...|.+
T Consensus 289 d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~--------------~~~~~~~~~~v~~ 334 (437)
T 3gre_A 289 NFV----------------KGHCQYAFINSDEQPSMEHFLPIEKGL----EEL--------------NFCGIRSLNALST 334 (437)
T ss_dssp ETT----------------TTEEEEEEESSSSCCCGGGGSCBCSSG----GGC--------------CCCCCCSGGGGCC
T ss_pred EcC----------------CCcEEEEEEcCCCCCccceeccccccc----ccc--------------eecccccCCceEE
Confidence 998 777888889999888888888876554 111 1333 8889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEe
Q psy3640 458 IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537 (616)
Q Consensus 458 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 537 (616)
++|+ ++++|++++.|+.|++||+.+. .....+.++......+....+++...+++.. |+... .......
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~ 403 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS-THSVDDS 403 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-----------
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEe--------ccccc-ccccCcc
Confidence 9999 7789999999999999999876 3445566666556667777777777666655 22222 1233455
Q ss_pred eccccCEEEEEEecC--CCEEEEEECCCcEEEec
Q psy3640 538 YGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWS 569 (616)
Q Consensus 538 ~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd 569 (616)
..|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 679999999999998 77999999999999995
No 58
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5e-38 Score=321.48 Aligned_cols=310 Identities=17% Similarity=0.234 Sum_probs=251.2
Q ss_pred EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc------eeEEeeeceee---EEEcCC----C---CEEE
Q psy3640 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE------CIQTYRGHSAE---VTFSPD----Q---STFC 326 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~---v~~~~~----~---~~l~ 326 (616)
...+.+|.+.|++++|+ + ++|++++.||.|++|++.+++ ....+.+|... ++|+|+ + .+|+
T Consensus 9 ~~~~~~h~~~i~~~~~~-~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSAC-N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEEC-S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEec-C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 35678999999999998 4 899999999999999999988 77777777644 579999 9 9999
Q ss_pred EEeCCCcEEEEECCCCce-----eEEeecC-----CcCEEEEEEc----CCCCE-EEEEECCCcEEEEecccccCCcccc
Q psy3640 327 SCSMDHTARIFNTNSGQE-----MHTLKAH-----TGPVISLQFS----SDRNM-LITGSFDSSIVVWDIQYQFGTRNAY 391 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~ 391 (616)
+++.||.|++||+.+++. ...+..| ...|.+++|+ |+++. |++++.||.|++||++.......
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-- 163 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN-- 163 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH--
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc--
Confidence 999999999999998887 8888888 5999999999 99999 99999999999999974100000
Q ss_pred cccccccCCcceEEE-------ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec---C---CCCEEEE
Q psy3640 392 AESTYRASHKPIHIL-------TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN---H---EDEVLDI 458 (616)
Q Consensus 392 ~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~l 458 (616)
.......+...+ ..|...+.+++|+|++ .+++++.||.|++||+++++.+..+.. | ...|.++
T Consensus 164 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 164 ---SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp ---HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred ---cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 000011122244 4588899999999999 999999999999999999999999998 8 8999999
Q ss_pred EEcCCCCEEEEEeCC---CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640 459 AFDYSGSKLATASSD---QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535 (616)
Q Consensus 459 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 535 (616)
+|+|++.+|++++.| |.|++||+.+.... ..+...... .....
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~---------------------------------~~~~~ 285 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHS---------------------------------SQASL 285 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC-----------------------------------------
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCccc---------------------------------ccccc
Confidence 999999999999999 99999998764211 111110000 00001
Q ss_pred EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec------cC---------------cccEEEEEEeeC
Q psy3640 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK------AH---------------EDDVFSCGFNYN 594 (616)
Q Consensus 536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~V~~l~~s~~ 594 (616)
....|...|.+++|+|++++|++++.||.|++||+.+++++..+. +| ..+|.+++|+|+
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~ 365 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK 365 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence 112388999999999999999999999999999999999999999 88 999999999999
Q ss_pred C----------CEEEEeeCCCcEEEcccCCC
Q psy3640 595 G----------DTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 595 ~----------~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+ ++|++++.||.|++|++.+.
T Consensus 366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 366 GWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccccccceEEEecCCCcEEEEEcCCC
Confidence 8 79999999999999999765
No 59
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.7e-37 Score=306.52 Aligned_cols=279 Identities=17% Similarity=0.303 Sum_probs=250.0
Q ss_pred ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcE---EEEEe--ccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE---ICTYR--GHQNVVYAVAFSEPYGC-LTGSYDRTCKLW 255 (616)
Q Consensus 182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~---~~~~~--~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw 255 (616)
...+|..+|++++|+|++++|++++ ||.|++||+.+++. ...+. +|...|.+++|+|++.+ ++++.|+.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3447999999999999999999999 99999999987753 33343 79999999999999984 588999999999
Q ss_pred eCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeC
Q psy3640 256 DIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSM 330 (616)
Q Consensus 256 d~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~ 330 (616)
|+.+++ ....+..|...|.+++|+ ++++++++++.||.|++||+.+++....+..|.. .++|+|+++.+++++.
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ECCCCCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 999987 667788999999999999 7899999999999999999999999888877654 4589999999999999
Q ss_pred CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
||.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||++ .. ....+..|.
T Consensus 204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~----------------~~-~~~~~~~~~ 265 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN----------------KP-DKYQLHLHE 265 (337)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------SS-CEEEECCCS
T ss_pred CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECC----------------CC-CeEEEcCCc
Confidence 9999999999998887775 78899999999999999999999999999996 22 345677899
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 481 (616)
..+.+++|+|+++++++++.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.+++|++
T Consensus 266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999999999877554 47889999999999999999999999999996
No 60
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-37 Score=304.12 Aligned_cols=283 Identities=19% Similarity=0.271 Sum_probs=255.0
Q ss_pred hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEE
Q psy3640 176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKL 254 (616)
Q Consensus 176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~i 254 (616)
.++..+.+.+|..+|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.++ +++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45677889999999999999 999999999999999999999999999999999999999999999955 9999999999
Q ss_pred EeCCCC---ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcC-CCCEEEE
Q psy3640 255 WDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSP-DQSTFCS 327 (616)
Q Consensus 255 wd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~-~~~~l~~ 327 (616)
|++... +.+..+.+|...|.+++|. ++.+++++.|+.|++|| .++....+..+... +++.| ++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 998665 5677889999999999995 68999999999999999 66677777666554 46776 9999999
Q ss_pred EeCCCcEEEEECCCCceeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640 328 CSMDHTARIFNTNSGQEMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 328 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (616)
++.||.|++|| .++....+.. |...+.+++|+|++. +++++.||.|++||++ ....+..+
T Consensus 161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~----------------~~~~~~~~ 221 (313)
T 3odt_A 161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMH----------------TGDVLRTY 221 (313)
T ss_dssp EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETT----------------TCCEEEEE
T ss_pred EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECC----------------chhhhhhh
Confidence 99999999999 4566777776 899999999999988 9999999999999998 67788889
Q ss_pred ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV 485 (616)
Q Consensus 407 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 485 (616)
..|...+.+++|+|++ .+++++.||.|++||+++++....+..|...|.+++|+|+++ +++++.||.|++|++.+..
T Consensus 222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence 9999999999999999 588999999999999999999999999999999999999998 6679999999999998753
No 61
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-38 Score=320.15 Aligned_cols=299 Identities=18% Similarity=0.303 Sum_probs=252.0
Q ss_pred EeeCCCCcEEEEEEeCC---CCCEEEEEECCCeEEEEeCCCcceeEEeeec--------eeeEEEcCC----CCEEEEEe
Q psy3640 265 TYRGHQNVVYAVAFSEP---YGDKILTGSFDKTLKLWASAKEECIQTYRGH--------SAEVTFSPD----QSTFCSCS 329 (616)
Q Consensus 265 ~~~~h~~~V~~l~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~----~~~l~~~~ 329 (616)
...+|.++|++++|+|. ....+++++.++.|++||+.+++.+..+..+ ...++|+|+ +.++++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999942 4566777777789999999999887777644 345689998 67999999
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE--
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-- 406 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 406 (616)
.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||++ .......+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~----------------~~~~~~~~~~ 156 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----------------TDTLVAIFGG 156 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT----------------TTEEEEEECS
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee----------------cCeEEEEecc
Confidence 999999999999999999999999999999999 89999999999999999997 56666666
Q ss_pred -ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee----------------------------cCCCCEEE
Q psy3640 407 -TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK----------------------------NHEDEVLD 457 (616)
Q Consensus 407 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v~~ 457 (616)
..|...|.+++|+|++.++++++.||.|++||+++++....+. .|...|.+
T Consensus 157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 6899999999999999999999999999999999876544333 38889999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEe
Q psy3640 458 IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537 (616)
Q Consensus 458 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 537 (616)
++|+ ++++++++.|+.|++||+............+... ...+..+
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~ 281 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN---------------------------------VTILGRF 281 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC---------------------------------EEEEEEE
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc---------------------------------hheeccc
Confidence 9998 6799999999999999987654332222211111 2456677
Q ss_pred eccccCEEEEEEecC--CCEEEEEECCCcEEEecCCcCeee----eEeccC--cccEEEEEEeeCCCEEEEeeCCCcEEE
Q psy3640 538 YGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGECI----QVLKAH--EDDVFSCGFNYNGDTIITASKDNTCCI 609 (616)
Q Consensus 538 ~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h--~~~V~~l~~s~~~~~l~t~s~Dg~i~v 609 (616)
..|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..+.+| ..+|++++|+|++++|++++.||.|++
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 361 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR 361 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence 889999999999999 999999999999999999998644 477777 789999999999999999999999999
Q ss_pred cccCC
Q psy3640 610 WRSMN 614 (616)
Q Consensus 610 W~~~~ 614 (616)
||+.+
T Consensus 362 wd~~~ 366 (366)
T 3k26_A 362 WDRLR 366 (366)
T ss_dssp EEC--
T ss_pred EEecC
Confidence 99863
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-37 Score=303.29 Aligned_cols=287 Identities=26% Similarity=0.348 Sum_probs=248.8
Q ss_pred CcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEE
Q psy3640 219 GHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297 (616)
Q Consensus 219 ~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~i 297 (616)
.+....+.+|.+.|.+++| +++. +++++.||.|++||+.+++....+..|...|.+++|+ ++++++++++.|+.+++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD-SEKELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE-TTTTEEEEEETTSCEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC-CCCCEEEEecCCCeEEE
Confidence 3677889999999999999 7766 6699999999999999999999999999999999999 78999999999999998
Q ss_pred EeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy3640 298 WASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377 (616)
Q Consensus 298 wd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~ 377 (616)
|++.... .++....+..|...|.+++| +++.+++++.||.|+
T Consensus 86 ~~~~~~~------------------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~ 127 (313)
T 3odt_A 86 VPLFATS------------------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK 127 (313)
T ss_dssp EETTCCT------------------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEeeecC------------------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence 8875322 23345556779999999999 577999999999999
Q ss_pred EEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCE
Q psy3640 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEV 455 (616)
Q Consensus 378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v 455 (616)
+|| .......+..|...+.++.+.+ ++..+++++.||.|++|| ..+....+.. +...+
T Consensus 128 ~~d------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 128 VWK------------------EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV 187 (313)
T ss_dssp EEE------------------TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE
T ss_pred EEc------------------CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE
Confidence 999 2355677788999999999988 899999999999999999 4556666766 88889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640 456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535 (616)
Q Consensus 456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 535 (616)
.+++|+|++. +++++.||.+++||+... +.+.
T Consensus 188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----------------------------------------------~~~~ 219 (313)
T 3odt_A 188 RHLAVVDDGH-FISCSNDGLIKLVDMHTG-----------------------------------------------DVLR 219 (313)
T ss_dssp EEEEEEETTE-EEEEETTSEEEEEETTTC-----------------------------------------------CEEE
T ss_pred EEEEEcCCCe-EEEccCCCeEEEEECCch-----------------------------------------------hhhh
Confidence 9999999887 888888888888888653 3344
Q ss_pred EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
.+.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..|..+|.+++|+|+++ +++++.||.|++|++.+.
T Consensus 220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 566799999999999999 699999999999999999999999999999999999999998 667999999999999764
No 63
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-37 Score=314.93 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=241.8
Q ss_pred hhhhhheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEEEEEe--ccCCcEEEEEEcC-CCC-EEEEECC
Q psy3640 175 QRYEKFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSE-PYG-CLTGSYD 249 (616)
Q Consensus 175 ~~~~~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~--~h~~~I~~l~fs~-~~~-lls~s~d 249 (616)
..+...+.+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+| ++. +++++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3456677899999999999999999 999999999999999999998887776 6999999999999 555 5599999
Q ss_pred CcEEEEeCCCCceEEEeeCC---CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCC
Q psy3640 250 RTCKLWDIKSGHEICTYRGH---QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQS 323 (616)
Q Consensus 250 ~~I~iwd~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~ 323 (616)
+.|++||+.+ ..+..+..| ...|.+++|+ ++++.+++++.|+.|++||+ +++.+..+.+|.. .++|+|+++
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~ 217 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD 217 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC
Confidence 9999999996 555555444 4889999999 88999999999999999999 5777888877654 458999999
Q ss_pred -EEEEEeCCCcEEEEECCC----CceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccc-c
Q psy3640 324 -TFCSCSMDHTARIFNTNS----GQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST-Y 396 (616)
Q Consensus 324 -~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~ 396 (616)
++++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++++|++++.|+.|++||++............. .
T Consensus 218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 296 (383)
T 3ei3_B 218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ 296 (383)
T ss_dssp TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence 999999999999999987 5566666 6999999999999 999999999999999999984322111100000 0
Q ss_pred ccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--CCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 397 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg 474 (616)
......+.........+..++++|++++ +++.|+.|++||+.+++.+..+.. +...+..++|+|++++|++++ |+
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 0000001111111234445666777766 777899999999999999999987 457788889999999999997 99
Q ss_pred cEEEEecCC
Q psy3640 475 TANLWTVGG 483 (616)
Q Consensus 475 ~i~iwd~~~ 483 (616)
.|++|++.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999864
No 64
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=311.24 Aligned_cols=292 Identities=15% Similarity=0.253 Sum_probs=245.7
Q ss_pred eecccCCcceEEEEECCCCCEEE-EEEC---CCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCC---CC-EEEEECCCc
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCL-TGSY---DRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEP---YG-CLTGSYDRT 251 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~la-sgs~---dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~---~~-lls~s~d~~ 251 (616)
+.+++|..+|++++|+|++..++ +|+. ||.|+|||+.+++..... .+|..+|.+++|+|+ +. +++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45678999999999999996554 5655 899999999998876544 489999999999998 35 669999999
Q ss_pred EEEEeCCCCc-eEEEeeCCCCcEEEEEEeC-----CCCCEEEEEECCCeEEEEeCCCcc-eeEEeeece-------eeEE
Q psy3640 252 CKLWDIKSGH-EICTYRGHQNVVYAVAFSE-----PYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHS-------AEVT 317 (616)
Q Consensus 252 I~iwd~~~~~-~~~~~~~h~~~V~~l~~~~-----~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~-------~~v~ 317 (616)
|++||+.+++ .+..+.+|...|.+++|.+ ++++.|++++.||.|++||+.+++ .+..+..+. ..++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence 9999999998 8899999999999997752 788999999999999999999987 677765432 2344
Q ss_pred ----EcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 318 ----FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS---DRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 318 ----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
|+|++.++++++.||.|++||+++++.... ..|...|.+++|+| +++++++++.||.|++||++.....
T Consensus 172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--- 247 (357)
T 3i2n_A 172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT--- 247 (357)
T ss_dssp EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT---
T ss_pred EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc---
Confidence 779999999999999999999999887544 56899999999999 9999999999999999999732110
Q ss_pred ccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEeec
Q psy3640 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTM-------------------CCFYTLKN 450 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~ 450 (616)
.........+|...|.+++|+|++. ++++++.||.|++||++++ +.+..+..
T Consensus 248 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (357)
T 3i2n_A 248 --------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL 319 (357)
T ss_dssp --------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred --------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence 1111223458999999999999998 8999999999999998753 46778889
Q ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCc
Q psy3640 451 HEDEVLDIAFDYSGSKLA-TASSDQTANLWTVGGA 484 (616)
Q Consensus 451 ~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~ 484 (616)
|...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus 320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 999999999999999998 8999999999999764
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-39 Score=338.48 Aligned_cols=344 Identities=9% Similarity=0.067 Sum_probs=245.8
Q ss_pred EEEEEeccCCcEEEEEEcCCC---------CEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEE
Q psy3640 221 EICTYRGHQNVVYAVAFSEPY---------GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 290 (616)
Q Consensus 221 ~~~~~~~h~~~I~~l~fs~~~---------~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s 290 (616)
....+. +.+.|.+|+|+|++ .++ +++.++.. -..+ |++..+++++
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~-~~~~~laS~s 180 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLN-EHLEMFDKEK 180 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccc-hhhhhhccCC
Confidence 333444 67899999999986 555 55544320 0124 7889999999
Q ss_pred CCCeEEEEeCCCccee----EEeeec---eeeEEEcCC------CCEEEEEeCCCcEEEEECCCCce-----------eE
Q psy3640 291 FDKTLKLWASAKEECI----QTYRGH---SAEVTFSPD------QSTFCSCSMDHTARIFNTNSGQE-----------MH 346 (616)
Q Consensus 291 ~dg~i~iwd~~~~~~~----~~~~~~---~~~v~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~ 346 (616)
.|++|++|++.+++.. ..+.++ ...++|+|+ +.+|++++.||+|++||+.++.. ..
T Consensus 181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~ 260 (524)
T 2j04_B 181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL 260 (524)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence 9999999999887643 234433 456789996 57999999999999999987642 24
Q ss_pred EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEE--EEccCC-C
Q psy3640 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC--LFNFSN-S 423 (616)
Q Consensus 347 ~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~ 423 (616)
.+.+|...|.+++|+++ ..|++|+.||+|++||++. ...+...+.+|...|.++ +|++++ .
T Consensus 261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~---------------~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 261 TLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTD---------------PEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp EECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTB---------------CSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred EEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCC---------------CCCceEEeecccccEEEEEEEcCCCCCe
Confidence 67789999999999986 4899999999999999973 223456678999999999 567887 8
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeE
Q psy3640 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHED--EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKV 501 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i 501 (616)
+|++++.|++|++||++++++...+.+|.. .|.+++|+|+++.+++++.|++|++||++.... ...+.+|.. .|
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~---~V 400 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHPLVSRET---TI 400 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEEEEECSS---CE
T ss_pred EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-ceeeecCCC---ce
Confidence 999999999999999999877766666543 588999999999999999999999999987543 334555554 58
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee-----ccccCEEEEEEecCCCEEEEEECCCcEEEecCC-cCee
Q psy3640 502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY-----GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-SGEC 575 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~~ 575 (616)
.+++|+|++++|++|+.||.|++||+... .+.... .+...+.+++|+|+++.+.. .| .+.+|+.. ++.+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~~ 475 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDVS 475 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC-------
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCcc
Confidence 88999999999999999999999998653 111111 01225779999999985532 22 34455543 5778
Q ss_pred eeEeccCcccEEEEEEeeCCC---EEEEeeCCCcEEEcccCC
Q psy3640 576 IQVLKAHEDDVFSCGFNYNGD---TIITASKDNTCCIWRSMN 614 (616)
Q Consensus 576 ~~~~~~h~~~V~~l~~s~~~~---~l~t~s~Dg~i~vW~~~~ 614 (616)
+..+.+|..+|.+++|+|+++ .||+|+.||+|+||++.-
T Consensus 476 ~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 476 KAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 889999999999999999964 999999999999999874
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.8e-37 Score=337.38 Aligned_cols=286 Identities=25% Similarity=0.363 Sum_probs=241.3
Q ss_pred EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-----ceeEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-----ECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i 334 (616)
...+.+|.+.|++++|++.++++|++|+.|++|++|++.+. .....+.+|... ++|+|+++++++|+.||.|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 35688999999999999666789999999999999998764 345567777654 5899999999999999999
Q ss_pred EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE---EecCcc
Q psy3640 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI---LTGHSQ 411 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 411 (616)
++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||... ...... ..+|..
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~----------------~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG----------------ECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------------CEEEEECSSTTSCSS
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC----------------CcceeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999751 111111 136888
Q ss_pred ceeEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640 412 EISNCLFNFSN--SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489 (616)
Q Consensus 412 ~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 489 (616)
.|.+++|+|++ ..+++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++.||.|++||+.+...
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~--- 595 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK--- 595 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE---
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---
Confidence 89999999986 6899999999999999999999999999999999999999999999999999999999976421
Q ss_pred EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569 (616)
Q Consensus 490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 569 (616)
+..+ .+...|.+++|+|++.+|++++ |+.|++||
T Consensus 596 --------------------------------------------~~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd 629 (694)
T 3dm0_A 596 --------------------------------------------LYSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWD 629 (694)
T ss_dssp --------------------------------------------EECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred --------------------------------------------EEEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence 1111 1345688888998887777765 45589999
Q ss_pred CCcCeeeeEeccCc-------------------ccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 570 TESGECIQVLKAHE-------------------DDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 570 ~~~~~~~~~~~~h~-------------------~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+++++.+..+..+. -.+++++|+|+|++|++|+.||+|++|++.
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 88888877665322 237899999999999999999999999985
No 67
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=322.74 Aligned_cols=361 Identities=17% Similarity=0.219 Sum_probs=249.1
Q ss_pred CcEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEE-EEECCCcEEEEeCCCCceEEEee-------------CCCCcE
Q psy3640 209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-PYGCL-TGSYDRTCKLWDIKSGHEICTYR-------------GHQNVV 273 (616)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~-~~~ll-s~s~d~~I~iwd~~~~~~~~~~~-------------~h~~~V 273 (616)
+.+++|+++.++....+.+|.+.|++++|+| ++.++ +++.||.|++||+.+++....+. +|...|
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence 4577888888888888999999999999999 88855 89999999999999887554443 599999
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--eeeEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--SAEVTFSP---DQSTFCSCSMDHTARIFNTNSGQEMHTL 348 (616)
Q Consensus 274 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 348 (616)
.+++|+|.++.++++++.||.|++||+.+++....+... ...++++| ++.++++++.+|.|++||+++++.+..+
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~ 182 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL 182 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence 999999558889999999999999999999888776533 34567777 4559999999999999999999999999
Q ss_pred ecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640 349 KAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427 (616)
Q Consensus 349 ~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 427 (616)
..|...|.+++|+|+++ ++++++.||.|++||++..........................|...|.+++|+|+++++++
T Consensus 183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 99999999999999998 59999999999999997543221111111111122222333678899999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc
Q psy3640 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD 507 (616)
Q Consensus 428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 507 (616)
++.||.|++||+++++.......+.... .... +......
T Consensus 263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~~------------------------------------~~~~~~~ 301 (408)
T 4a11_B 263 VGTDNRMRLWNSSNGENTLVNYGKVCNN-----SKKG------------------------------------LKFTVSC 301 (408)
T ss_dssp EETTSCEEEEETTTCCBCCCCCCCCCCC-----CSSC------------------------------------CCCEECC
T ss_pred ecCCCeEEEEECCCCccceecccccccc-----cccc------------------------------------ceeEEec
Confidence 9999999999999886544332211000 0000 0000111
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEE
Q psy3640 508 YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587 (616)
Q Consensus 508 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~ 587 (616)
..+..+++++.++.|++||+.++ ..+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.....+...
T Consensus 302 ~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-- 378 (408)
T 4a11_B 302 GCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-- 378 (408)
T ss_dssp SSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred CCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--
Confidence 22334555566677777777663 566778899999999999999999999999999999999999888766544322
Q ss_pred EEEEee-CCCEEEEeeCCCcEEEcccCC
Q psy3640 588 SCGFNY-NGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 588 ~l~~s~-~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
..+.+ ....+.+++.|+.+++|+...
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred -cccccccceeecccCccCceeecCCcc
Confidence 22333 334566778899999998754
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-37 Score=314.81 Aligned_cols=287 Identities=17% Similarity=0.217 Sum_probs=250.8
Q ss_pred ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK 258 (616)
Q Consensus 182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~ 258 (616)
.+..|..+|++++|+|+|++||+|+.||.|++||+.+++ .+..+.+|...|.+++|+|++.++ +++.|+.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345699999999999999999999999999999999987 888999999999999999999855 88999999999999
Q ss_pred CCceEEE--eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce---eEEe-ee---ceeeEEEcCCCCEEEEEe
Q psy3640 259 SGHEICT--YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---IQTY-RG---HSAEVTFSPDQSTFCSCS 329 (616)
Q Consensus 259 ~~~~~~~--~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~---~~~~v~~~~~~~~l~~~~ 329 (616)
+++.... +..|...|.+++|+ ++++++++++.|+.|++||+..+.. ...+ .. ....++|+|++.++++++
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 8875444 46799999999999 8899999999999999999988763 2333 22 345568999999999999
Q ss_pred CCCcEEEEEC------------------CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640 330 MDHTARIFNT------------------NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY 391 (616)
Q Consensus 330 ~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 391 (616)
.||.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--------- 232 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD--------- 232 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG---------
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC---------
Confidence 9999999995 4678888998999999999999999999999999999999998
Q ss_pred cccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC--CeE--E----------------------
Q psy3640 392 AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT--MCC--F---------------------- 445 (616)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~---------------------- 445 (616)
....+..+..|...+.+++|+|++.++++| .|+.|++|++++ +.. .
T Consensus 233 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 233 -------KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp -------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred -------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 667888889999999999999999988887 899999999987 421 0
Q ss_pred --------------EEe-ecCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEecCCcee
Q psy3640 446 --------------YTL-KNHEDEVLDIAFD-YSG---SKLATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 446 --------------~~~-~~~~~~v~~l~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~ 486 (616)
..+ .+|...|++++|. ++| .+|++++.||.|++|++.+...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 222 4789999999966 666 9999999999999999976543
No 69
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=329.83 Aligned_cols=313 Identities=11% Similarity=0.089 Sum_probs=256.9
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEE
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEIC 264 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~ 264 (616)
.-...|.+++|||||+++|+++.|++|+ |.+.++. +.+|...|.+++|+|+| .++.+.+|+ ++...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg------~~~~~~~~~---~~~~~ 78 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE------FENKLDFEL---AQQNG 78 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC------CCCTTTTSC---CCSSC
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC------CcceEEEEe---CCCce
Confidence 4557899999999999999999999999 7655544 47999999999999998 455555555 33222
Q ss_pred Eee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec-------eeeEEEcCCCCEEEEEeCCCcEEE
Q psy3640 265 TYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-------SAEVTFSPDQSTFCSCSMDHTARI 336 (616)
Q Consensus 265 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~l~~~~~dg~i~i 336 (616)
.+. .|...|.+++|+ |+|..||+++.||.|++||... ++..+..+ ...++|+|+|++|++|+.||+|++
T Consensus 79 ~~~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp SSTTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred EeecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 333 468899999999 8999999999999999999654 55555522 345799999999999999999999
Q ss_pred EECCCCce-------eEEe----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc---c
Q psy3640 337 FNTNSGQE-------MHTL----KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK---P 402 (616)
Q Consensus 337 ~d~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~ 402 (616)
||+.++.. +.++ .+|...|.+++|+|+| +++++.|++|++||+. ... .
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~----------------~~~~~~~ 217 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS----------------ASSHQPV 217 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC----------------SSSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC----------------CCccccc
Confidence 99998753 5666 5677899999999999 8889999999999996 222 2
Q ss_pred eEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEE
Q psy3640 403 IHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF--DYSGSKLATASSDQTANLW 479 (616)
Q Consensus 403 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~~~dg~i~iw 479 (616)
...+ .+|...|.+++|+ ++.+++++ ++.|++||+.+++......+|...+.+++| +|++..+++++.+|+ ++|
T Consensus 218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw 293 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL 293 (588)
T ss_dssp EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence 3445 4788999999999 68888887 699999999998874444479999999999 999999999999999 999
Q ss_pred ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640 480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 559 (616)
.... ++++|++..+++. |+.+++|+..... ...+. +...|.+++|||||+.+|++
T Consensus 294 ~~d~--------------------~~~spd~~l~a~~--d~~v~lW~~~g~~--l~~~~-~~~~I~~va~SPdG~~lA~~ 348 (588)
T 2j04_A 294 LEDE--------------------LHVTADNIIAPYL--EKKFKKWSTIWNE--FNNYE-TTLVIHGISLSPDGYSIAIV 348 (588)
T ss_dssp ESSS--------------------EEEECCCSSHHHH--HHHHHHTTTTTTS--SSSSC-CEEEEEEEEECTTSSEEEEE
T ss_pred eecc--------------------EEECCCceEEEEc--CCEEEEEECCCCc--eeeec-cceEEEEEEECCCCCEEEEE
Confidence 9862 5689999988885 9999999986542 22333 36679999999999999998
Q ss_pred EC
Q psy3640 560 SQ 561 (616)
Q Consensus 560 s~ 561 (616)
+.
T Consensus 349 ~~ 350 (588)
T 2j04_A 349 YD 350 (588)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.8e-37 Score=313.34 Aligned_cols=297 Identities=18% Similarity=0.283 Sum_probs=250.0
Q ss_pred ecccCCcceEEEEECCC----CCEEEEEECCCcEEEEECCCCcEEEEEec-----cCCcEEEEEEcCC----CC-EEEEE
Q psy3640 182 MLKSHLLPLTNITFDKF----GTRCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEP----YG-CLTGS 247 (616)
Q Consensus 182 ~l~~h~~~i~~v~~s~~----g~~lasgs~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~l~fs~~----~~-lls~s 247 (616)
...+|..+|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +. +++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 44589999999999984 45677777777999999999888777764 5578999999999 44 55999
Q ss_pred CCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe---eece---eeEEEcCC
Q psy3640 248 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHS---AEVTFSPD 321 (616)
Q Consensus 248 ~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~---~~v~~~~~ 321 (616)
.||.|++||+.+++.+..+.+|...|.+++|+|.+++++++++.||.|++||+.+++.+..+ .+|. ..++|+|+
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence 99999999999999999999999999999999448999999999999999999999988887 4454 44589999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEee----------------------------cCCcCEEEEEEcCCCCEEEEEECC
Q psy3640 322 QSTFCSCSMDHTARIFNTNSGQEMHTLK----------------------------AHTGPVISLQFSSDRNMLITGSFD 373 (616)
Q Consensus 322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~l~~~~~~~~l~~g~~d 373 (616)
+.++++++.||.|++||+++++....+. .|...|.+++|+ ++++++++.|
T Consensus 173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 250 (366)
T 3k26_A 173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE 250 (366)
T ss_dssp SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence 9999999999999999999876544333 399999999998 6799999999
Q ss_pred CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCe----EEEE
Q psy3640 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NSMIASSSLDGTAKLWDVRTMC----CFYT 447 (616)
Q Consensus 374 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~----~~~~ 447 (616)
+.|++||++.......... ........+..+..|...+.+++|+|+ +++|++|+.||.|++||+.+++ ....
T Consensus 251 ~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CEEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 9999999875432211111 111122457778889999999999999 9999999999999999999875 4446
Q ss_pred eecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 448 LKNH--EDEVLDIAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 448 ~~~~--~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
+..| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 7777 7899999999999999999999999999974
No 71
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2e-37 Score=312.36 Aligned_cols=294 Identities=13% Similarity=0.103 Sum_probs=225.7
Q ss_pred CCcEEEEEEcCCCCEE-EEECC-------CcEEEEeCCCCce----------EEEeeCCCCcEEEEEEeCCCCCEEEEEE
Q psy3640 229 QNVVYAVAFSEPYGCL-TGSYD-------RTCKLWDIKSGHE----------ICTYRGHQNVVYAVAFSEPYGDKILTGS 290 (616)
Q Consensus 229 ~~~I~~l~fs~~~~ll-s~s~d-------~~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~~l~s~s 290 (616)
..||++++|+||+++| +|+.+ +.|++|++..+.. ...+.+|...|.+++++ ++.+++|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence 4689999999999977 55543 3599999876532 13466888899999876 67888877
Q ss_pred CCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----E-----eecCCcCEEEEEEc
Q psy3640 291 FDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH----T-----LKAHTGPVISLQFS 361 (616)
Q Consensus 291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~-----~~~~~~~v~~l~~~ 361 (616)
.++..++|+ ++.|+.+++|++.+..... . ...+...+.+++|+
T Consensus 91 ~~~~~~l~s----------------------------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS 142 (365)
T 4h5i_A 91 NENSTKITQ----------------------------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS 142 (365)
T ss_dssp CCCHHHHHH----------------------------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred CCCccEEEE----------------------------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence 665544443 3345556666654432211 1 11234568899999
Q ss_pred CCCCEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeC
Q psy3640 362 SDRNMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV 439 (616)
Q Consensus 362 ~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~ 439 (616)
|||+++++++ .|++|++||+. ...++..+. |...|.+++|+|+++++++++.+ .+.+|+.
T Consensus 143 pDg~~la~as~~~d~~i~iwd~~----------------~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~ 204 (365)
T 4h5i_A 143 REGTVAAIASSKVPAIMRIIDPS----------------DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIST 204 (365)
T ss_dssp TTSSCEEEEESCSSCEEEEEETT----------------TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEeECC----------------CCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEe
Confidence 9999987655 68999999997 556666554 77889999999999999999855 5667776
Q ss_pred CCCeEEEE--eecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE
Q psy3640 440 RTMCCFYT--LKNHEDEVLDIAFDYSGSKLATASSDQ----TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513 (616)
Q Consensus 440 ~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 513 (616)
.++..... ...|...|.+++|+|+++.+++++.|+ .++.|++......
T Consensus 205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------------- 258 (365)
T 4h5i_A 205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------------- 258 (365)
T ss_dssp TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--------------------------
T ss_pred ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec--------------------------
Confidence 66655433 345778899999999999999998876 4566665432110
Q ss_pred EEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe-ccCcccEEEEEEe
Q psy3640 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL-KAHEDDVFSCGFN 592 (616)
Q Consensus 514 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s 592 (616)
......+.+|..+|++++|+|||++||+|+.|++|+|||+++++++..+ .+|..+|++++|+
T Consensus 259 -----------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 259 -----------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS 321 (365)
T ss_dssp -----------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred -----------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence 1233456789999999999999999999999999999999999999875 7999999999999
Q ss_pred eCCCEEEEeeCCCcEEEcccCC
Q psy3640 593 YNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 593 ~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
|||++|||+|.|++|+||++..
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999964
No 72
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.3e-37 Score=315.01 Aligned_cols=304 Identities=17% Similarity=0.247 Sum_probs=250.6
Q ss_pred EEeCCCCceEEEeeCCCCcEEEEEEeCCCC-CEEEEEECCCeEEEEeCCCcceeEEee--ecee---eEEEcC-CCCEEE
Q psy3640 254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYR--GHSA---EVTFSP-DQSTFC 326 (616)
Q Consensus 254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~---~v~~~~-~~~~l~ 326 (616)
+|++.+.+....+.+|...|.+++|+ +++ +++++|+.||.|++||+.+++....+. +|.. .++|+| ++..++
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWH-PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEEC-SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEEC-CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 44455667778889999999999999 666 999999999999999999988877765 3444 458999 789999
Q ss_pred EEeCCCcEEEEECCCCceeEEeecC---CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLKAH---TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 403 (616)
+++.|+.|++||+.+ ..+..+..+ ...|.+++|+|++++|++++.|+.|++||+ ...++
T Consensus 136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-----------------~~~~~ 197 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-----------------DGHEI 197 (383)
T ss_dssp EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-----------------TSCEE
T ss_pred EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-----------------CCCEE
Confidence 999999999999985 555555444 478999999999999999999999999998 34567
Q ss_pred EEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCC----CeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q psy3640 404 HILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRT----MCCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTAN 477 (616)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~ 477 (616)
..+..|...|.+++|+|++. ++++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++.+|++++.|+.|+
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~ 276 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR 276 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence 78889999999999999999 999999999999999987 6666666 6999999999999 999999999999999
Q ss_pred EEecCCceeeeeEEeccCCC----eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640 478 LWTVGGAVELLQTFYGHSNE----VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553 (616)
Q Consensus 478 iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg 553 (616)
+||+.+.... ..+..+... ...+. +.|+ ..+.+..++|+|++
T Consensus 277 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~--------------------------------p~~~~~~~~~s~dg 322 (383)
T 3ei3_B 277 VYSSYDWSKP-DQIIIHPHRQFQHLTPIK-ATWH--------------------------------PMYDLIVAGRYPDD 322 (383)
T ss_dssp EEETTBTTSC-SEEEECCBCCCTTSCCCC-CEEC--------------------------------SSSSEEEEECBCCT
T ss_pred EEECCCCccc-cccccccccccccccceE-Eecc--------------------------------CCCCceEEEecCCc
Confidence 9999875332 222222111 00000 1111 23456678889999
Q ss_pred CEEEEEECCCcEEEecCCcCeeeeEecc--CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 554 KLVLSGSQDTTCRLWSTESGECIQVLKA--HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
++ +|+.||.|++||+.+++++..+.+ |...+..++|+|++++|++++ ||.|++|++.+
T Consensus 323 ~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 323 QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 88 889999999999999999999987 457777789999999999997 99999999975
No 73
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-39 Score=324.80 Aligned_cols=343 Identities=14% Similarity=0.120 Sum_probs=238.0
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeC
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDI 257 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~ 257 (616)
..++.|..+|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|...|.+++|+|++. +++++.|++|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567889999999999999999999999999999998 77788999999999999999988 559999999999999
Q ss_pred CCCc---eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcE
Q psy3640 258 KSGH---EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 258 ~~~~---~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i 334 (616)
.+++ ....+.+|...|.+++|+ |++++|++++.|+.|++||+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------- 135 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDW---------------------------- 135 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----C----------------------------
T ss_pred CCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccc----------------------------
Confidence 9987 677888899999999999 78888888888888888887644310
Q ss_pred EEEECCCCceeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc--cccccCCcceEEEecCcc
Q psy3640 335 RIFNTNSGQEMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE--STYRASHKPIHILTGHSQ 411 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 411 (616)
.....+.. |...|.+++|+|++++|++++.|+.|++||+............ ............+ .|..
T Consensus 136 --------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 136 --------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp --------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred --------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence 12334445 8899999999999999999999999999998632211100000 0000012334444 8999
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-e
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-E 486 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~ 486 (616)
.|.+++|+|++++|++++.||.|++||+++++. +..+..|...|.+++|+|++++|++++.++.+ +|+..... .
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~ 285 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA 285 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence 999999999999999999999999999999877 77888999999999999999999888766555 77665322 1
Q ss_pred eeeEEeccCCCe------------eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC-
Q psy3640 487 LLQTFYGHSNEV------------SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG- 553 (616)
Q Consensus 487 ~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg- 553 (616)
....+....... .....+.|++....+......+... ........|...|+++++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~H~~~i~~~~~~~~~~ 357 (377)
T 3dwl_C 286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ--------SISSLPTVHQNMIATLRPYAGTP 357 (377)
T ss_dssp CSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred EEeeecccccccccccccccccccccccccccccccccccchhhccccc--------cccccCccccceeEEEeccCCCC
Confidence 111111111100 0122233333222222111111110 1122344699999999976654
Q ss_pred C---EEEEEECCCcEEEecC
Q psy3640 554 K---LVLSGSQDTTCRLWST 570 (616)
Q Consensus 554 ~---~l~s~s~dg~i~iwd~ 570 (616)
. .|+||+.||.|++||+
T Consensus 358 ~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 358 GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp TEEEEEEEEETTSEEEEECC
T ss_pred CceEEEEeecCCCcEEEecC
Confidence 3 6999999999999985
No 74
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.5e-38 Score=323.26 Aligned_cols=312 Identities=13% Similarity=0.181 Sum_probs=230.6
Q ss_pred hhhhheecccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEE
Q psy3640 176 RYEKFKMLKSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKL 254 (616)
Q Consensus 176 ~~~~~~~l~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~i 254 (616)
.+.......+|...|+||+|+| ++++||+|+.||+|+|||+.+++....
T Consensus 108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~------------------------------ 157 (435)
T 4e54_B 108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF------------------------------ 157 (435)
T ss_dssp TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE------------------------------
T ss_pred ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE------------------------------
Confidence 4555667788999999999999 567999999999999999876643321
Q ss_pred EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec-----eeeEEEcCCCCEEEEEe
Q psy3640 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-----SAEVTFSPDQSTFCSCS 329 (616)
Q Consensus 255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~l~~~~ 329 (616)
..+.+|.+.|++++|+|.++++|++++.||+|++||++++........+ ...++|+|++.++++|+
T Consensus 158 ---------~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 228 (435)
T 4e54_B 158 ---------IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD 228 (435)
T ss_dssp ---------ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred ---------EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe
Confidence 2234566666667776445667777777777777777655433322222 23568999999999999
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (616)
.||.|++||++ ++.+..+.+|...|.+++|+|++. ++++|+.|+.|++||++... .........+
T Consensus 229 ~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-------------~~~~~~~~~~ 294 (435)
T 4e54_B 229 NVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-------------GKASFLYSLP 294 (435)
T ss_dssp SSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC-------------SSSCCSBCCB
T ss_pred CCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc-------------ccceEEEeee
Confidence 99999999986 456778889999999999999876 78899999999999997432 1122233457
Q ss_pred CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 409 HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED------EVLDIAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 409 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
|...|.+++|+|++.+|++++.||.|++||++++.....+..|.. .+....|+|++..++++..
T Consensus 295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 364 (435)
T 4e54_B 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY---------- 364 (435)
T ss_dssp CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC----------
T ss_pred ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc----------
Confidence 899999999999999999999999999999999887777765543 2334566676666655532
Q ss_pred CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCCCcEEEEecCCceEEeEEeeccccCEEEE-EEecCCCEEEEEE
Q psy3640 483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSGS 560 (616)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~s 560 (616)
+++..+++ +..++.|++||..++........+|...|.++ +|+|+|++|++|+
T Consensus 365 -------------------------~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 365 -------------------------PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp -------------------------CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred -------------------------CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 22222222 23456789999988655555556788889887 6999999999876
Q ss_pred CCCcEEEecCCcCeee
Q psy3640 561 QDTTCRLWSTESGECI 576 (616)
Q Consensus 561 ~dg~i~iwd~~~~~~~ 576 (616)
|+.|+||++++++..
T Consensus 420 -d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 420 -GYHILIWSQQEARTR 434 (435)
T ss_dssp -SSEEEECCCC-----
T ss_pred -CCcEEEEECCcCeee
Confidence 789999999988753
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-36 Score=308.79 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=235.9
Q ss_pred eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc--eeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--CIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTN 340 (616)
Q Consensus 266 ~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~ 340 (616)
+..|.++|++++|+ ++++++++++.|+.|++||+.+++ .+..+.+|... ++|+|+++++++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 45689999999999 889999999999999999999987 78888777654 5899999999999999999999998
Q ss_pred CCceeEE--eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE
Q psy3640 341 SGQEMHT--LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418 (616)
Q Consensus 341 ~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 418 (616)
+++.... +..|...|.+++|+|++++|++++.|+.|++||++.... ..........|...+.+++|
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~------------~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND------------WWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT------------EEEEEEECTTCCSCEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc------------ceeeeeeecccCCCeeEEEE
Confidence 8875444 367899999999999999999999999999999973210 00122333567899999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCC------------------CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640 419 NFSNSMIASSSLDGTAKLWDVR------------------TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT 480 (616)
Q Consensus 419 ~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd 480 (616)
+|+++++++++.||.|++||++ .++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 9999999999999999999954 6677788888888888888888888888888888888888
Q ss_pred cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640 481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s 560 (616)
+.+. ..+..+..|..+|++++|+|++++|++|
T Consensus 231 ~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 262 (372)
T 1k8k_C 231 ADKK-----------------------------------------------MAVATLASETLPLLAVTFITESSLVAAG- 262 (372)
T ss_dssp GGGT-----------------------------------------------TEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred CCCC-----------------------------------------------ceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence 7653 2334455677788888888888777776
Q ss_pred CCCcEEEecCCc--Ce--------------------------------ee------eEe-ccCcccEEEEEEe-eCC---
Q psy3640 561 QDTTCRLWSTES--GE--------------------------------CI------QVL-KAHEDDVFSCGFN-YNG--- 595 (616)
Q Consensus 561 ~dg~i~iwd~~~--~~--------------------------------~~------~~~-~~h~~~V~~l~~s-~~~--- 595 (616)
.|+.|++|++.+ ++ .. ..+ .+|.++|++++|. ++|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~ 342 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 342 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence 788888888876 42 11 223 4899999999976 566
Q ss_pred CEEEEeeCCCcEEEcccCC
Q psy3640 596 DTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 596 ~~l~t~s~Dg~i~vW~~~~ 614 (616)
++|+|++.||+|++|++.+
T Consensus 343 ~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 343 SQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SEEEEEETTSEEEEEEHHH
T ss_pred eeEEEecCCCceEEEEecC
Confidence 8999999999999999864
No 76
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=306.81 Aligned_cols=293 Identities=17% Similarity=0.245 Sum_probs=240.7
Q ss_pred EEeeCCCCcEEEEEEeCCCCC-EEEEEEC---CCeEEEEeCCCcceeEEee-ec---eeeEEEcCC---CCEEEEEeCCC
Q psy3640 264 CTYRGHQNVVYAVAFSEPYGD-KILTGSF---DKTLKLWASAKEECIQTYR-GH---SAEVTFSPD---QSTFCSCSMDH 332 (616)
Q Consensus 264 ~~~~~h~~~V~~l~~~~~~~~-~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~---~~~v~~~~~---~~~l~~~~~dg 332 (616)
..+.+|...|.+++|+ |++. ++++++. |+.|++||+.+++...... +| ...++|+|+ +.++++++.||
T Consensus 12 ~~~~~h~~~v~~~~~~-p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWV-PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEECSSCEEEEEEC-TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhccCCCCceEEEEEc-CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 4457899999999999 6665 5556665 8999999999987654432 33 345689998 69999999999
Q ss_pred cEEEEECCCCc-eeEEeecCCcCEEEEEE------cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 333 TARIFNTNSGQ-EMHTLKAHTGPVISLQF------SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 333 ~i~i~d~~~~~-~~~~~~~~~~~v~~l~~------~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||++.. ..+...
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~---------------~~~~~~ 155 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK---------------DDPVAN 155 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC---------------SSCSEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC---------------CCccee
Confidence 99999999988 88999999999999955 688999999999999999999731 124555
Q ss_pred EecCcc----ceeEEE----EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC---CCCEEEEEeCCC
Q psy3640 406 LTGHSQ----EISNCL----FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY---SGSKLATASSDQ 474 (616)
Q Consensus 406 ~~~~~~----~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg 474 (616)
+..+.. .+.+++ |++++.++++++.||.|++||+++++.... ..|...|.+++|+| ++.++++++.||
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 555444 788887 688999999999999999999999987544 56889999999999 899999999999
Q ss_pred cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC
Q psy3640 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK 554 (616)
Q Consensus 475 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~ 554 (616)
.|++||+....... ......+.+|...|++++|+|+++
T Consensus 235 ~i~i~d~~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 235 KFHVFDMRTQHPTK------------------------------------------GFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp EEEEEEEEEEETTT------------------------------------------EEEEEEEECCSSCEEEEEEETTEE
T ss_pred eEEEEeCcCCCccc------------------------------------------ceeeeccCCCcCCEEEEEECCCCC
Confidence 99999986531110 011124557999999999999998
Q ss_pred -EEEEEECCCcEEEecCCcC-------------------eeeeEeccCcccEEEEEEeeCCCEEE-EeeCCCcEEEcccC
Q psy3640 555 -LVLSGSQDTTCRLWSTESG-------------------ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWRSM 613 (616)
Q Consensus 555 -~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~h~~~V~~l~~s~~~~~l~-t~s~Dg~i~vW~~~ 613 (616)
+|++++.||.|++||+.++ +.+..+.+|.++|.+++|+|++++|+ +++.||.|++|++.
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 8999999999999999754 46778889999999999999999998 89999999999997
Q ss_pred CC
Q psy3640 614 NR 615 (616)
Q Consensus 614 ~~ 615 (616)
+.
T Consensus 353 ~~ 354 (357)
T 3i2n_A 353 KL 354 (357)
T ss_dssp C-
T ss_pred Cc
Confidence 64
No 77
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-35 Score=306.51 Aligned_cols=300 Identities=19% Similarity=0.329 Sum_probs=242.3
Q ss_pred cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee--CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640 231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308 (616)
Q Consensus 231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 308 (616)
....|+|++++ +|+.+.|++|+|||..+|+....+. +|...|++++|+ +++++|++|+.||+|++||+.+++.+..
T Consensus 107 y~~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 45679999765 6666679999999999999877664 678899999999 8999999999999999999999999999
Q ss_pred eeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccC
Q psy3640 309 YRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSG-QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG 386 (616)
Q Consensus 309 ~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 386 (616)
+.+|...+ ++++++..+++|+.|+.+.+||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+......
T Consensus 185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 99988766 67788999999999999999998864 45677889999999999999999999999999999999874321
Q ss_pred CcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEE--EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIAS--SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463 (616)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 463 (616)
....+.....|...|.+++|+|.+. .+++ |+.|+.|++||+.++++...+.. ...+.++.|+|+
T Consensus 265 ------------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~ 331 (420)
T 4gga_A 265 ------------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPH 331 (420)
T ss_dssp ------------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETT
T ss_pred ------------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCC
Confidence 2345567788999999999999764 5554 35789999999999999888874 456888889998
Q ss_pred CCEEEEEe--CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccc
Q psy3640 464 GSKLATAS--SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS 541 (616)
Q Consensus 464 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~ 541 (616)
+..+++++ .|+.|++||+.+. ..+..+.+|.
T Consensus 332 ~~~lv~~sg~~d~~I~iwd~~~~-----------------------------------------------~~v~~l~gH~ 364 (420)
T 4gga_A 332 YKELISGHGFAQNQLVIWKYPTM-----------------------------------------------AKVAELKGHT 364 (420)
T ss_dssp TTEEEEEECTTTCCEEEEETTTC-----------------------------------------------CEEEEECCCS
T ss_pred CCeEEEEEecCCCEEEEEECCCC-----------------------------------------------cEEEEEcCCC
Confidence 88887765 5777777777542 4556678999
Q ss_pred cCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640 542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFN 592 (616)
Q Consensus 542 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 592 (616)
+.|++++|+|||++|+||+.|++|+|||+....+....+.+...+....|.
T Consensus 365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 999999999999999999999999999998877776666665554444443
No 78
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=304.05 Aligned_cols=332 Identities=18% Similarity=0.243 Sum_probs=242.6
Q ss_pred hhheecccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEEEEEe-------------ccCCcEEEEEEcC-CCC
Q psy3640 178 EKFKMLKSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKSGHEICTYR-------------GHQNVVYAVAFSE-PYG 242 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~-------------~h~~~I~~l~fs~-~~~ 242 (616)
.....+++|.++|++++|+| ++++||+|+.||.|++||+.+++....+. +|...|.+++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 44577889999999999999 99999999999999999999886654443 5999999999999 554
Q ss_pred -EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCC--CCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eE
Q psy3640 243 -CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP--YGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EV 316 (616)
Q Consensus 243 -lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v 316 (616)
+++++.|+.|++||+.+++....+. +...+.++.+++. ++.++++++.|+.|++||+.+++.+..+.+|.. .+
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~ 192 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence 6699999999999999999988887 7889999999843 445999999999999999999999988887765 45
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCc-eeEEe---------------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy3640 317 TFSPDQS-TFCSCSMDHTARIFNTNSGQ-EMHTL---------------KAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379 (616)
Q Consensus 317 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iw 379 (616)
+|+|++. .+++++.||.|++||++++. ....+ ..|...|.+++|+|++++|++++.||.|++|
T Consensus 193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence 8999998 58999999999999998765 34444 5688999999999999999999999999999
Q ss_pred ecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640 380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459 (616)
Q Consensus 380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 459 (616)
|+........... .........+........+..+++++.++.|++||+.+++.+..+.+|...|.+++
T Consensus 273 d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 273 NSSNGENTLVNYG-----------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp ETTTCCBCCCCCC-----------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred ECCCCccceeccc-----------cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 9974322111000 00001111122222234456677778899999999999999999999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q psy3640 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY-SGSKLATASSDQTAKLWTVG 528 (616)
Q Consensus 460 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~ 528 (616)
|+|++++|++++.||.|++|++.............. ...+.+ ........+.++.+++|+..
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT-------KSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe-------ccccccccceeecccCccCceeecCCc
Confidence 999999999999999999999987643322111110 112222 33445567788999999864
No 79
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=320.23 Aligned_cols=283 Identities=11% Similarity=0.218 Sum_probs=249.2
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCC----CcEEEEEeccCCcEEEEEEcCC-CC-EEEEECCCcEEEEeCC
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEP-YG-CLTGSYDRTCKLWDIK 258 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~----~~~~~~~~~h~~~I~~l~fs~~-~~-lls~s~d~~I~iwd~~ 258 (616)
.|..+|++++|+|++++||+|+.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +. +++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 5899999999999999999999999999999988 4588899999999999999998 56 5589999999999999
Q ss_pred CCc------eEEE---eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec---------eeeEEEcC
Q psy3640 259 SGH------EICT---YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH---------SAEVTFSP 320 (616)
Q Consensus 259 ~~~------~~~~---~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~ 320 (616)
+++ .... +..|...|.+++|+|..+..+++++.|+.|++||+.+++.+..+..+ ...++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 887 3333 36799999999999444899999999999999999999988888654 34568999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceeEEee-cCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640 321 DQ-STFCSCSMDH---TARIFNTNSG-QEMHTLK-AHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 321 ~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
++ .++++++.++ .|++||++++ .....+. +|...|.+++|+| ++++|++++.||.|++||++
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~----------- 293 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE----------- 293 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS-----------
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC-----------
Confidence 97 6899999998 9999999986 6677777 8999999999999 89999999999999999998
Q ss_pred cccccCCcceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeec----------------------
Q psy3640 394 STYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKN---------------------- 450 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------------------- 450 (616)
...++..+..|...+.+++|+|++ .++++++.||.|++||+.+.........
T Consensus 294 -----~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 294 -----SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp -----SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred -----CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 677888899999999999999998 8999999999999999987653222111
Q ss_pred -------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 451 -------------HEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 451 -------------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
+..++.+++|+|+|++|++++.|+.|++|++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 566778999999999999999999999999875
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-35 Score=290.50 Aligned_cols=253 Identities=23% Similarity=0.339 Sum_probs=208.1
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCC--CcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEEE
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS--GHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKLW 255 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~--~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~iw 255 (616)
..+.+|...|++++|+|+|++||+|+.|++|+|||+.+ ++.+.++.+|.++|.+++|+++ +. +++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 46789999999999999999999999999999999974 4678899999999999999864 55 5699999999999
Q ss_pred eCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC
Q psy3640 256 DIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD 331 (616)
Q Consensus 256 d~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d 331 (616)
|+.+++ .+..+.+|...|.+++|+ |+ +.+|++++.|++|++||++++...
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~------------------------- 136 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTT------------------------- 136 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCB-------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCce-------------------------
Confidence 999874 567788899999999999 54 788999999999988887654210
Q ss_pred CcEEEEECCCCceeEEeecCCcCEEEEEEcCC-------------CCEEEEEECCCcEEEEecccccCCccccccccccc
Q psy3640 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSD-------------RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRA 398 (616)
Q Consensus 332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 398 (616)
....+.+|...|.+++|+|+ +++|++|+.|++|++||++....
T Consensus 137 ------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~------------ 192 (297)
T 2pm7_B 137 ------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------ 192 (297)
T ss_dssp ------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT------------
T ss_pred ------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc------------
Confidence 01223456667777777765 57999999999999999872100
Q ss_pred CCcceEEEecCccceeEEEEccCC---CEEEEEeCCCcEEEEeCCCCe---EEEEe--ecCCCCEEEEEEcCCCCEEEEE
Q psy3640 399 SHKPIHILTGHSQEISNCLFNFSN---SMIASSSLDGTAKLWDVRTMC---CFYTL--KNHEDEVLDIAFDYSGSKLATA 470 (616)
Q Consensus 399 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~~~~~~~l~~~ 470 (616)
.......+.+|...|.+++|+|++ .+|++++.|++|++||+++.. ....+ ..|...|.+++|+|++++|+++
T Consensus 193 ~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~ 272 (297)
T 2pm7_B 193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (297)
T ss_dssp EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence 112456788999999999999984 899999999999999987642 12233 4678899999999999999999
Q ss_pred eCCCcEEEEecCC
Q psy3640 471 SSDQTANLWTVGG 483 (616)
Q Consensus 471 ~~dg~i~iwd~~~ 483 (616)
+.|+.|++|+...
T Consensus 273 ~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 273 GGDNKVTLWKENL 285 (297)
T ss_dssp ETTSCEEEEEECT
T ss_pred cCCCcEEEEEECC
Confidence 9999999999763
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-35 Score=303.82 Aligned_cols=288 Identities=19% Similarity=0.291 Sum_probs=244.6
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK 258 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~-h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~ 258 (616)
....+|...+...++++++..+++++.||.|++||+.+++....+.. |...|.+++|+|++.++ +++.||.|++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 34457776644433443446788999999999999999999888876 89999999999999855 88999999999999
Q ss_pred CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC-CcceeEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTA 334 (616)
Q Consensus 259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i 334 (616)
+++.+..+.+|...|.+++|+ ++.+++++.||.|++||++ .......+.+|... ++|+|++.++++++.||.|
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 165 SQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp TCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 999999999999999999996 5899999999999999999 45667777766554 5899999999999999999
Q ss_pred EEEECCCCceeEEeecCCcCEEEEEEcCCC-CEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDR-NMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411 (616)
Q Consensus 335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (616)
++||+.+++....+..|...|.+++|+|++ .++++++ .|+.|++||+. .......+. +..
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----------------~~~~~~~~~-~~~ 304 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----------------TGARVNTVD-AGS 304 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----------------TCCEEEEEE-CSS
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----------------CCCEEEEEe-CCC
Confidence 999999999999999999999999999976 4666655 79999999997 555555554 667
Q ss_pred ceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEEE--EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy3640 412 EISNCLFNFSNSMIASSS--LDGTAKLWDVRTMCCFY--TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL 487 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 487 (616)
.+.+++|+|++..+++++ .||.|++||+.++.... .+.+|...|.+++|+|++.+|++++.||.|++|++.++...
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 899999999999999954 89999999999865544 46789999999999999999999999999999999876544
Q ss_pred e
Q psy3640 488 L 488 (616)
Q Consensus 488 ~ 488 (616)
.
T Consensus 385 ~ 385 (401)
T 4aez_A 385 K 385 (401)
T ss_dssp -
T ss_pred c
Confidence 3
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.7e-35 Score=301.67 Aligned_cols=278 Identities=23% Similarity=0.385 Sum_probs=233.1
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc
Q psy3640 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA 392 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 392 (616)
.++|+++ +.|++|. |++|++||..+++....+. .|...|++++|+|+|++|++|+.||.|++||+.
T Consensus 110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~---------- 177 (420)
T 4gga_A 110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ---------- 177 (420)
T ss_dssp CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT----------
T ss_pred eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC----------
Confidence 3567754 4666654 7888888888888776554 577889999999999999999999999999998
Q ss_pred ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~ 471 (616)
....+..+.+|...+.++.+ ++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|++.++++++
T Consensus 178 ------~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 178 ------QQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp ------TTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ------CCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee
Confidence 77888899999999988766 5789999999999999998864 56677889999999999999999999999
Q ss_pred CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC-EEEEE--eCCCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS-KLATA--SSDQTAKLWTVGGAVELLQTFYGHSNEVSKVS 548 (616)
Q Consensus 472 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 548 (616)
.|+.+++|+....................|.+++|+|.+. .++++ +.|+.|++||+.++ .....+.. ...+.++.
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~-~~~v~~~~ 327 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDA-HSQVCSIL 327 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEEC-SSCEEEEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeecc-ccceeeee
Confidence 9999999999775433222222333345688899999765 45543 47999999999985 45555554 46799999
Q ss_pred EecCCCEEEEEE--CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 549 FHPTGKLVLSGS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 549 ~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
|+|+++.+++++ .|+.|+|||+.+++++..+.+|.++|++++|+|||++|+||+.||+|+|||+.+
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999988865 789999999999999999999999999999999999999999999999999865
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.6e-35 Score=289.88 Aligned_cols=251 Identities=22% Similarity=0.342 Sum_probs=213.7
Q ss_pred EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CC
Q psy3640 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NS 423 (616)
Q Consensus 346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 423 (616)
..+.+|...|.+++|+|+|++|++|+.|++|++||+... ....+..+.+|..+|.+++|+++ ++
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------~~~~~~~l~gH~~~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------CBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------CcEEEEEEccccCCeEEEEecCCCcCC
Confidence 456789999999999999999999999999999998621 23567788999999999999863 89
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeEEeccCCCe
Q psy3640 424 MIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVE-LLQTFYGHSNEV 498 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~ 498 (616)
+|++|+.|++|++||++++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... ....+.+|..
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~-- 146 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-- 146 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS--
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC--
Confidence 99999999999999998873 56677789999999999997 89999999999999999976532 2334445543
Q ss_pred eeEEEEEEcCC-------------CCEEEEEeCCCcEEEEecCCce---EEeEEeeccccCEEEEEEecCC---CEEEEE
Q psy3640 499 SKVLDIAFDYS-------------GSKLATASSDQTAKLWTVGGAV---ELLQTFYGHSNEVSKVSFHPTG---KLVLSG 559 (616)
Q Consensus 499 ~~i~~~~~s~~-------------~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spdg---~~l~s~ 559 (616)
.+.+++|+|+ +++|++|+.|+.|++||+.+.. .....+.+|...|.+++|+|++ ++|+++
T Consensus 147 -~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 147 -GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp -CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred -ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence 4778999997 5799999999999999987542 2566788999999999999995 899999
Q ss_pred ECCCcEEEecCCcCe---eeeEe--ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 560 SQDTTCRLWSTESGE---CIQVL--KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 560 s~dg~i~iwd~~~~~---~~~~~--~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+.|++|++||++++. ....+ ..|...|.+++|+|++++||+++.||+|++|+..
T Consensus 226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 999999999998753 12233 5688899999999999999999999999999976
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.1e-35 Score=298.45 Aligned_cols=291 Identities=17% Similarity=0.328 Sum_probs=244.2
Q ss_pred eccCC--cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC-CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC
Q psy3640 226 RGHQN--VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302 (616)
Q Consensus 226 ~~h~~--~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~ 302 (616)
.+|.. .+.++.|++ +.+++++.|+.|++||+.+++....+.. |...|.+++|+ +++++|++|+.||.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS-HDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC-CCCCEEEEECCCCeEEEEECcC
Confidence 34544 356678886 4588999999999999999998887776 88999999999 7899999999999999999999
Q ss_pred cceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640 303 EECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTN-SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380 (616)
Q Consensus 303 ~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd 380 (616)
++.+..+.+|...+ ++..++..+++++.||.|++||++ .+.....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 245 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD 245 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence 99999998877665 333477899999999999999998 5677888899999999999999999999999999999999
Q ss_pred cccccCCcccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCEEE
Q psy3640 381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSS--LDGTAKLWDVRTMCCFYTLKNHEDEVLD 457 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 457 (616)
++ ...+...+..|...|.+++|+|++ .++++++ .|+.|++||+++++.+..+. +...|.+
T Consensus 246 ~~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~ 308 (401)
T 4aez_A 246 AR----------------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTS 308 (401)
T ss_dssp TT----------------CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred CC----------------CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence 98 677788888999999999999976 4566654 69999999999999888886 6678999
Q ss_pred EEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640 458 IAFDYSGSKLATAS--SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535 (616)
Q Consensus 458 l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 535 (616)
++|+|+++.+++++ .||.+++|++.+.. .....
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~---------------------------------------------~~~~~ 343 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSG---------------------------------------------LTKQV 343 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTE---------------------------------------------EEEEE
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCcc---------------------------------------------ceeEE
Confidence 99999999998854 78889888875531 12233
Q ss_pred EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec
Q psy3640 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK 580 (616)
Q Consensus 536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~ 580 (616)
.+.+|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus 344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 456799999999999999999999999999999999998876543
No 85
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=289.40 Aligned_cols=281 Identities=22% Similarity=0.379 Sum_probs=236.5
Q ss_pred eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640 314 AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY 391 (616)
Q Consensus 314 ~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 391 (616)
..++|++++ .|++| .|++|++||+.+++.+..+. .|...|.+++|+|++++|++|+.||+|++||++
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~--------- 97 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ--------- 97 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT---------
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC---------
Confidence 457888875 66665 48999999999998877664 577889999999999999999999999999998
Q ss_pred cccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCEEEEEEcCCCCEEEEE
Q psy3640 392 AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGSKLATA 470 (616)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 470 (616)
..+.+..+.+|...+.++ ++++..+++++.++.+++|+.... ..+..+.+|...+..+++++++++++++
T Consensus 98 -------~~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 168 (318)
T 4ggc_A 98 -------QQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG 168 (318)
T ss_dssp -------TTEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred -------CceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence 777888889998887765 456789999999999999998875 5567788999999999999999999999
Q ss_pred eCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE---EEEeCCCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640 471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL---ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV 547 (616)
Q Consensus 471 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 547 (616)
+.|+.|++||+.++................+..++++|++..+ ++++.++.|++||........ ...+...+..+
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~--~~~~~~~v~~~ 246 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS--AVDAHSQVCSI 246 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE--EEECSSCEEEE
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc--cccceeeeeee
Confidence 9999999999987544333333333444567888999877643 456778999999998754332 34577889999
Q ss_pred EEecCCCEEEEEE--CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCCC
Q psy3640 548 SFHPTGKLVLSGS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616 (616)
Q Consensus 548 ~~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~e 616 (616)
.|+|+++.+++++ .|+.|++||+.+++++..+.+|.++|++++|+|++++|+|||.||+|+|||+.+.|
T Consensus 247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999888765 79999999999999999999999999999999999999999999999999997653
No 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=298.45 Aligned_cols=293 Identities=18% Similarity=0.264 Sum_probs=249.8
Q ss_pred hhhhhheecccCCcceEEEEECCC---CCEEEEEECCCcEEEEECCC-CcEE-EEEeccCCcEEEEEEcCCCC-EEEEEC
Q psy3640 175 QRYEKFKMLKSHLLPLTNITFDKF---GTRCLTGSYDRTCKLWDIKS-GHEI-CTYRGHQNVVYAVAFSEPYG-CLTGSY 248 (616)
Q Consensus 175 ~~~~~~~~l~~h~~~i~~v~~s~~---g~~lasgs~dg~i~iwd~~~-~~~~-~~~~~h~~~I~~l~fs~~~~-lls~s~ 248 (616)
..+..++.+.+|...|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++. +++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345567789999999999999999 69999999999999999997 5555 78899999999999999998 458999
Q ss_pred CCcEEEEeCCCCceEEEeeCCCCcEEEEEE--eCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE
Q psy3640 249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC 326 (616)
Q Consensus 249 d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~ 326 (616)
|+.|++||+.+++.+. +.+|...|.+++| + +++.++++++.||.|++||+++++.+..+..+....++.+....++
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV 184 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence 9999999999998776 5569999999999 6 7888999999999999999999999999998887777777788999
Q ss_pred EEeCCCcEEEEECCCCceeEEe--ecCCcCEEEEEEcCCCCE----EEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTL--KAHTGPVISLQFSSDRNM----LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~----l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
+++.++.+.+|++......... ..+...+.++++.++... +++++.||.|++||++... ..
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-------------~~ 251 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN-------------PA 251 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC-------------HH
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC-------------cc
Confidence 9999999999999876544332 223455666666555443 9999999999999997321 01
Q ss_pred cceEEEecCcc------------ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEE
Q psy3640 401 KPIHILTGHSQ------------EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA 468 (616)
Q Consensus 401 ~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~ 468 (616)
.....+..|.. .|.+++|+|++++|++++.||.|++||+++++++..+..|...|.+++|+|++++|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331 (368)
T ss_dssp HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence 44555566655 799999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEecC
Q psy3640 469 TASSDQTANLWTVG 482 (616)
Q Consensus 469 ~~~~dg~i~iwd~~ 482 (616)
+++.|+..+.|++.
T Consensus 332 ~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 332 YASSYDWSKGHEFY 345 (368)
T ss_dssp EEECCCSTTCGGGC
T ss_pred EEeccccccccccc
Confidence 99999866665543
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-36 Score=308.89 Aligned_cols=284 Identities=14% Similarity=0.169 Sum_probs=225.1
Q ss_pred eceeeEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640 311 GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388 (616)
Q Consensus 311 ~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 388 (616)
+....++|+|++++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+....
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~--- 88 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--- 88 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC---
Confidence 34456688888888888888888999998887 6777888999999999999999999999999999999997321
Q ss_pred ccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe---EEEEeec-CCCCEEEEEEcCCC
Q psy3640 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC---CFYTLKN-HEDEVLDIAFDYSG 464 (616)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~l~~~~~~ 464 (616)
...+...+..|...|.+++|+|+++++++++.|+.|++||+++++ ....+.. |...|.+++|+|++
T Consensus 89 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 89 ----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN 158 (377)
T ss_dssp ----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred ----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence 123667778899999999999999999999999999999999887 3677777 99999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCc-----------------eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 465 SKLATASSDQTANLWTVGGA-----------------VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527 (616)
Q Consensus 465 ~~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 527 (616)
++|++++.|+.+++||+... ......+ .....+.+++|+|++++|++++.||.|++||+
T Consensus 159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999999999999998521 1222222 33345889999999999999999999999999
Q ss_pred CCceE---EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC-cCe-ee--------------------------
Q psy3640 528 GGAVE---LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-SGE-CI-------------------------- 576 (616)
Q Consensus 528 ~~~~~---~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~-~~-------------------------- 576 (616)
.+... .+..+.+|..+|++++|+|++++|++|+.|+.+ +|+.. ++. ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG 313 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence 87533 266788999999999999999999999877665 66554 220 00
Q ss_pred --------eE----------------eccCcccEEEEEEeeCC-C---EEEEeeCCCcEEEccc
Q psy3640 577 --------QV----------------LKAHEDDVFSCGFNYNG-D---TIITASKDNTCCIWRS 612 (616)
Q Consensus 577 --------~~----------------~~~h~~~V~~l~~s~~~-~---~l~t~s~Dg~i~vW~~ 612 (616)
.. ...|.+.|+++++.+.. . .|+|+|.||.|++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 11399999999976553 3 6999999999999986
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.5e-35 Score=305.21 Aligned_cols=276 Identities=26% Similarity=0.463 Sum_probs=245.2
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCC
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKS 259 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~ 259 (616)
....+|...|++++| +++++++|+.||+|++||+.+++....+.+|...|.+++| ++. +++|+.||+|++||+.+
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 334567778999888 7899999999999999999999999999999999999999 445 66999999999999999
Q ss_pred CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee---EEeeeceeeE-EEcCCCCEEEEEeCCCcEE
Q psy3640 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI---QTYRGHSAEV-TFSPDQSTFCSCSMDHTAR 335 (616)
Q Consensus 260 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~ 335 (616)
++.+..+.+|...|.+++|+ ++.+++|+.||.|++||+.+++.. ..+.+|...+ ++..+++++++|+.||.|+
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 279 (435)
T ss_dssp CCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred CcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence 99999999999999999997 469999999999999999988765 5566666554 4445899999999999999
Q ss_pred EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640 336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415 (616)
Q Consensus 336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 415 (616)
+||+++++.+..+.+|...|.++++ +++++++|+.||.|++||++ ....+..+.+|...|.+
T Consensus 280 vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~ 341 (435)
T 1p22_A 280 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----------------CGACLRVLEGHEELVRC 341 (435)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT----------------TCCEEEEECCCSSCEEE
T ss_pred EEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC----------------CCCEEEEEeCCcCcEEE
Confidence 9999999999999999999999999 46899999999999999998 67788889999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCe---------EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640 416 CLFNFSNSMIASSSLDGTAKLWDVRTMC---------CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV 485 (616)
Q Consensus 416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 485 (616)
+++ ++.++++|+.||.|++||++++. ++..+..|.+.|.+++| ++.+|++++.||.|++||+.+..
T Consensus 342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 988 78899999999999999997765 78889999999999999 67899999999999999997753
No 89
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.9e-36 Score=313.53 Aligned_cols=296 Identities=18% Similarity=0.236 Sum_probs=227.4
Q ss_pred EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG 342 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~ 342 (616)
.....+|...|++++|+|.++++||+|+.||.|++||+.+++..
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------ 155 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------ 155 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence 34566788999999999667788889988888888887644321
Q ss_pred ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEc
Q psy3640 343 QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFN 419 (616)
Q Consensus 343 ~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 419 (616)
....+.+|.+.|.+++|+| ++++|++++.||+|++||++ ......... .+...+.+++|+
T Consensus 156 -~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 218 (435)
T 4e54_B 156 -TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK----------------GNILRVFASSDTINIWFCSLDVS 218 (435)
T ss_dssp -EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT----------------SCEEEEEECCSSCSCCCCCEEEE
T ss_pred -eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc----------------CCceeEEeccCCCCccEEEEEEC
Confidence 2223457999999999998 68999999999999999986 222222222 234457889999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCe
Q psy3640 420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498 (616)
Q Consensus 420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 498 (616)
+++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++. ++++++.|+.|++||+........ +.......
T Consensus 219 ~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-~~~~~~h~ 296 (435)
T 4e54_B 219 ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-FLYSLPHR 296 (435)
T ss_dssp TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-CSBCCBCS
T ss_pred CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-EEEeeecc
Confidence 9999999999999999999864 55677889999999999999876 688999999999999976533221 11112223
Q ss_pred eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecccc------CEEEEEEecCCCEEEEEE------------
Q psy3640 499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN------EVSKVSFHPTGKLVLSGS------------ 560 (616)
Q Consensus 499 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~l~~spdg~~l~s~s------------ 560 (616)
..|.+++|+|++.+|++++.||.|++||+.+.. ....+..|.. .+....|+|++.++++++
T Consensus 297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 375 (435)
T 4e54_B 297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY 375 (435)
T ss_dssp SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTT
T ss_pred ccccceeECCCCCeeEEEcCCCEEEEEECCCCc-cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEec
Confidence 458899999999999999999999999998753 3333444432 233456777777766654
Q ss_pred CCCcEEEecCCcCeeeeEec-cCcccEEEE-EEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 561 QDTTCRLWSTESGECIQVLK-AHEDDVFSC-GFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 561 ~dg~i~iwd~~~~~~~~~~~-~h~~~V~~l-~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
.++.|++||..+++++..+. +|...|.++ +|+|+|++|++|+ |++|+||++++.
T Consensus 376 ~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 376 ELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp CCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence 33579999999999988764 688888887 6999999999876 889999999864
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=283.37 Aligned_cols=273 Identities=20% Similarity=0.343 Sum_probs=234.3
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEe
Q psy3640 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~--~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~ 266 (616)
.++|+||+++ +||+|. |++|+|||+.+++.++.+. +|...|++++|+|+++++ +|+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999986 777765 8999999999999888775 677889999999999954 9999999999999999999999
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-eeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSG 342 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~~~ 342 (616)
.+|...+.++.+. +..+++++.++.+++|+..... .+..+.+|... +.+.++++++++++.||.|++||++++
T Consensus 106 ~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 9999999988776 6899999999999999988764 44556665544 479999999999999999999999876
Q ss_pred ce----eEEeecCCcCEEEEEEcCCCCEE---EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640 343 QE----MHTLKAHTGPVISLQFSSDRNML---ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415 (616)
Q Consensus 343 ~~----~~~~~~~~~~v~~l~~~~~~~~l---~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 415 (616)
+. ......+.+.|.+++++|++..+ ++++.++.|++||.. .. .......+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----------------~~-~~~~~~~~~~~v~~ 245 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----------------SG-ACLSAVDAHSQVCS 245 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----------------TC-CEEEEEECSSCEEE
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----------------cc-cccccccceeeeee
Confidence 53 45566788899999999976533 456678999999985 33 33444567788999
Q ss_pred EEEccCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 416 CLFNFSNSMIASSS--LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484 (616)
Q Consensus 416 ~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 484 (616)
+.+++++..+++++ .|+.|++||+++++++..+.+|.+.|++++|+|++++|++++.||+|++||+.+.
T Consensus 246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999888765 7899999999999999999999999999999999999999999999999998653
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.9e-36 Score=300.01 Aligned_cols=289 Identities=16% Similarity=0.145 Sum_probs=212.2
Q ss_pred CcceEEEEECCCCCEEEEEECCC-------cEEEEECCCCcE----------EEEEeccCCcEEEEEEcCCCCEEEEECC
Q psy3640 187 LLPLTNITFDKFGTRCLTGSYDR-------TCKLWDIKSGHE----------ICTYRGHQNVVYAVAFSEPYGCLTGSYD 249 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~dg-------~i~iwd~~~~~~----------~~~~~~h~~~I~~l~fs~~~~lls~s~d 249 (616)
.-||++++|+|||++||+|+.+. .|++|++..+.. ...+.+|...|.+++++++ .++++..+
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-~~~~g~~~ 92 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-IILVGCNE 92 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-EEEEECCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-EEEEEECC
Confidence 45899999999999999998643 599999876532 2245688888988887643 23344433
Q ss_pred CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE------------eeeceeeEE
Q psy3640 250 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT------------YRGHSAEVT 317 (616)
Q Consensus 250 ~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------~~~~~~~v~ 317 (616)
+..++|+ ++.|+.+++|++........ .......++
T Consensus 93 ~~~~l~s--------------------------------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (365)
T 4h5i_A 93 NSTKITQ--------------------------------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVY 140 (365)
T ss_dssp CHHHHHH--------------------------------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEE
T ss_pred CccEEEE--------------------------------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEE
Confidence 3333322 22233333333322211100 011234578
Q ss_pred EcCCCCEEEEEe--CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 318 FSPDQSTFCSCS--MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 318 ~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
|+||++++++++ .|++|++||+++++.+..+. |...|.+++|+|+|+++++++.+ .+.+|+..
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~------------- 205 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTV------------- 205 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETT-------------
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEec-------------
Confidence 999999987655 68999999999999988886 78889999999999999999855 55666654
Q ss_pred cccCCcce--EEEecCccceeEEEEccCCCEEEEEeCCC----cEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCC
Q psy3640 396 YRASHKPI--HILTGHSQEISNCLFNFSNSMIASSSLDG----TAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGS 465 (616)
Q Consensus 396 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~ 465 (616)
..... .....|...+.+++|+|++..+++++.++ .++.|++..... ...+..|...|++++|+|+|+
T Consensus 206 ---~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~ 282 (365)
T 4h5i_A 206 ---TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE 282 (365)
T ss_dssp ---TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred ---cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence 23322 23456888899999999999999999887 588898876643 345667888888888888888
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE-EeeccccCE
Q psy3640 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ-TFYGHSNEV 544 (616)
Q Consensus 466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v 544 (616)
+||+|+.|++|++||+.+. +++. .+.+|..+|
T Consensus 283 ~lasgs~D~~V~iwd~~~~-----------------------------------------------~~~~~~~~gH~~~V 315 (365)
T 4h5i_A 283 LAVLASNDNSIALVKLKDL-----------------------------------------------SMSKIFKQAHSFAI 315 (365)
T ss_dssp EEEEEETTSCEEEEETTTT-----------------------------------------------EEEEEETTSSSSCE
T ss_pred ceEEEcCCCEEEEEECCCC-----------------------------------------------cEEEEecCcccCCE
Confidence 8888888888888887653 3333 357899999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 545 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
++++|||||++||+|+.|++|+|||+...
T Consensus 316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 316 TEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999999999643
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.2e-35 Score=293.21 Aligned_cols=285 Identities=12% Similarity=0.111 Sum_probs=243.4
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCC--EEEEECCCcEEE
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKL 254 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~fs~~~~--lls~s~d~~I~i 254 (616)
+....+|...|++++|+|++++|++|+.||.|+|||+.+++ ....+.+|...|.+++|+|++. +++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 34567899999999999999999999999999999998887 4556679999999999999998 458999999999
Q ss_pred EeC-CCCceEEEeeC--CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC---------cceeEEee--eceeeEEEcC
Q psy3640 255 WDI-KSGHEICTYRG--HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK---------EECIQTYR--GHSAEVTFSP 320 (616)
Q Consensus 255 wd~-~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~--~~~~~v~~~~ 320 (616)
||+ .+++. ..+.+ |...|.+++|+ + ++.+++++.|+.|++||+.+ ++++..+. .....++|+|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 160 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred EEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence 999 87765 77888 99999999999 5 99999999999999999987 66555544 3344568888
Q ss_pred CCCEEEEEeCCCcEEEEECCC-Cc--eeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCccccccccc
Q psy3640 321 DQSTFCSCSMDHTARIFNTNS-GQ--EMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396 (616)
Q Consensus 321 ~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 396 (616)
++ +++++.++.|++||+++ +. .......|...+.+++|+| +++++++++.||.|++|+++.....
T Consensus 161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~--------- 229 (342)
T 1yfq_A 161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD--------- 229 (342)
T ss_dssp SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS---------
T ss_pred Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc---------
Confidence 77 99999999999999998 54 3344556888999999999 9999999999999999999732000
Q ss_pred ccCCcceEEEecCcc---------ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCE
Q psy3640 397 RASHKPIHILTGHSQ---------EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSK 466 (616)
Q Consensus 397 ~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~ 466 (616)
........+..|.. .|.+++|+|++++|++++.||.|++||+.+++.+..+..| ..+|.+++ |++++
T Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~ 306 (342)
T 1yfq_A 230 -YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNI 306 (342)
T ss_dssp -TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred -cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCe
Confidence 01255566666654 9999999999999999999999999999999999999998 99999999 99999
Q ss_pred EEEEeCCCc-EEEEec
Q psy3640 467 LATASSDQT-ANLWTV 481 (616)
Q Consensus 467 l~~~~~dg~-i~iwd~ 481 (616)
|++++.||. .+.+..
T Consensus 307 l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 307 LCLATSDDTFKTNAAI 322 (342)
T ss_dssp EEEEEECTHHHHCSSS
T ss_pred EEEEecCCcccccccc
Confidence 999999998 555553
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.9e-34 Score=297.71 Aligned_cols=296 Identities=23% Similarity=0.420 Sum_probs=248.8
Q ss_pred EEEeeCCCCc-EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcCCCCEEEEEeCCCcEEEEE
Q psy3640 263 ICTYRGHQNV-VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFN 338 (616)
Q Consensus 263 ~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~~~~l~~~~~dg~i~i~d 338 (616)
...+.+|... +.++.+. ++++++|+.||+|++||+.+++.+..+.+|...+ +|+|++ .+++|+.||.|++||
T Consensus 114 ~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred eEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 3577889877 5677765 6899999999999999999999999998887655 788887 999999999999999
Q ss_pred CCCCceeEEeecCCcCEEEEEEc--CCCCEEEEEECCCcEEEEecccccCCcccccc-------cccccCCcceEEEecC
Q psy3640 339 TNSGQEMHTLKAHTGPVISLQFS--SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE-------STYRASHKPIHILTGH 409 (616)
Q Consensus 339 ~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 409 (616)
+++++.+..+.+|...|.+++|+ ++++++++|+.||.|++||++........... ............+.+|
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 57789999999999999999754322111000 0001122235677788
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489 (616)
Q Consensus 410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 489 (616)
...+.++ ++++.++++++.||.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+.++
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~----- 342 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG----- 342 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-----
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----
Confidence 8888776 678999999999999999999999999999999999999999999999999999999999998653
Q ss_pred EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569 (616)
Q Consensus 490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 569 (616)
..+..+.+|...|.+++|+ +++|++++.||.|++||
T Consensus 343 ------------------------------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd 378 (464)
T 3v7d_B 343 ------------------------------------------ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD 378 (464)
T ss_dssp ------------------------------------------EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred ------------------------------------------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence 4455667899999999997 57999999999999999
Q ss_pred CCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 570 TESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 570 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+.+++...... |...+..++|++++++|++++ ||.|++||+.+.
T Consensus 379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 379 ANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp TTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred CCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 99988776654 566788899999999999998 899999999875
No 94
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=313.21 Aligned_cols=320 Identities=10% Similarity=0.092 Sum_probs=251.9
Q ss_pred cCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640 228 HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 306 (616)
Q Consensus 228 h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 306 (616)
-...|.+++|+|||+++ +++.|++|+ |...++.+ .+|...|.+++|+ |+| .++.+.+|+.+.....
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~Fs-Pdg-------~~~~~~~~~~~~~~~~ 80 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEF-PLE-------FENKLDFELAQQNGLL 80 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEE-CCC-------CCCTTTTSCCCSSCSS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEEC-CCC-------CcceEEEEeCCCceEe
Confidence 45789999999999965 889999999 76666544 7999999999999 666 5666666654433222
Q ss_pred E-EeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCc-----CEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640 307 Q-TYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTG-----PVISLQFSSDRNMLITGSFDSSIVVWD 380 (616)
Q Consensus 307 ~-~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~g~~dg~i~iwd 380 (616)
. .-......++|+|+|..+|+++.||.+++||..+ .+..+. |.. .+.+++|+|||++|++|+.||+|++||
T Consensus 81 ~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 1 1134556679999999999999999999999654 666666 665 499999999999999999999999999
Q ss_pred cccccCCcccccccccccCCcceEEE----ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE---EEEe-ecCC
Q psy3640 381 IQYQFGTRNAYAESTYRASHKPIHIL----TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC---FYTL-KNHE 452 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~ 452 (616)
+....... .....+..+ .+|...|.+++|+|++ +++++.|+.+++||+..+.. ..++ .+|.
T Consensus 158 ~~~~~l~~---------~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~ 226 (588)
T 2j04_A 158 IRKNSENT---------PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR 226 (588)
T ss_dssp CCCCTTTC---------CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred CCCCcccc---------ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence 97310000 000124555 6677899999999999 88899999999999988763 3456 3788
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEE--cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF--DYSGSKLATASSDQTAKLWTVGGA 530 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~ 530 (616)
..|.+++|+ ++.+|+++ +++|++||+.+........ +|.. .+..+++ +|++..+++++.+|. ++|..+
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~---~V~~va~~~s~d~~~La~a~edG~-klw~~d-- 296 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLE---NFHIIPLNHEKESTILLMSNKTSY-KVLLED-- 296 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCS---CCCEEEETTCSSCEEEEECSSCEE-EEEESS--
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCc---eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--
Confidence 899999999 68999887 6999999998864432222 4544 4667899 999999999999999 999986
Q ss_pred eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeC
Q psy3640 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASK 603 (616)
Q Consensus 531 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~ 603 (616)
.++++||+..+++. |+++++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus 297 ---------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ---------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 26699999888875 9999999985444 555655 677999999999999999874
No 95
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.1e-34 Score=298.01 Aligned_cols=281 Identities=28% Similarity=0.500 Sum_probs=254.7
Q ss_pred hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI 257 (616)
Q Consensus 178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~ 257 (616)
+....+.+|..+|++++|+ ++++++|+.||+|++||+.+++.+..+.+|...|.+++|++ ..+++++.|++|++||+
T Consensus 150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDI 226 (445)
T ss_dssp CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEES
T ss_pred cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEEC
Confidence 4567788999999999997 67999999999999999999999999999999999999963 34779999999999999
Q ss_pred CCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEE
Q psy3640 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARI 336 (616)
Q Consensus 258 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i 336 (616)
.+++.+..+.+|...|.+++| +++.+++++.||.|++||+.+++.+..+.+|...+ ++..++..+++++.||.|++
T Consensus 227 ~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i 303 (445)
T 2ovr_B 227 ETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV 303 (445)
T ss_dssp SSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence 999999999999999999999 47899999999999999999999999998877655 44448999999999999999
Q ss_pred EECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec---Cccce
Q psy3640 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG---HSQEI 413 (616)
Q Consensus 337 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i 413 (616)
||+.+++.+..+.+|...+.++.++ ++++++|+.||.|++||++ ....+..+.. |...|
T Consensus 304 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~----------------~~~~~~~~~~~~~~~~~v 365 (445)
T 2ovr_B 304 WDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK----------------TGQCLQTLQGPNKHQSAV 365 (445)
T ss_dssp EETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT----------------TCCEEEEECSTTSCSSCE
T ss_pred EECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC----------------CCcEEEEEccCCCCCCCE
Confidence 9999999999999999999998884 6799999999999999997 6666777765 78889
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecCCc
Q psy3640 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL-----KNHEDEVLDIAFDYSGSKLATASSDQT----ANLWTVGGA 484 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~dg~----i~iwd~~~~ 484 (616)
.+++++ ++++++|+.||.|++||+.+++.+..+ ..+.+.|.+++|+|++..+++++.||+ +.+||+...
T Consensus 366 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 366 TCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999985 689999999999999999999998888 467889999999999999999999998 999998753
No 96
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=9.7e-35 Score=290.82 Aligned_cols=288 Identities=18% Similarity=0.312 Sum_probs=224.0
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC----cEEEEEeccCCcEEEEEEcC--CCC-EEEEECCCcE
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFSE--PYG-CLTGSYDRTC 252 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~h~~~I~~l~fs~--~~~-lls~s~d~~I 252 (616)
.+.+.+|..+|++++|+|+|++||+|+.||.|++||+.++ +....+.+|...|.+++|+| ++. +++++.|+.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 3567899999999999999999999999999999999876 46778889999999999999 466 5599999999
Q ss_pred EEEeCCCC---------ceEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEee-----------
Q psy3640 253 KLWDIKSG---------HEICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYR----------- 310 (616)
Q Consensus 253 ~iwd~~~~---------~~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------- 310 (616)
++||+.++ +.+..+.+|...|.+++|+ ++ ++++++++.||.|++||+.+++.+..+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999987 5678888999999999999 77 8999999999999999999887654432
Q ss_pred -----eceeeEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEeecCCcCEEEEEEcCCC----CEEEEEECCCcE
Q psy3640 311 -----GHSAEVTFSPD---QSTFCSCSMDHTARIFNTNSGQE--MHTLKAHTGPVISLQFSSDR----NMLITGSFDSSI 376 (616)
Q Consensus 311 -----~~~~~v~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~~g~~dg~i 376 (616)
.....++|+|+ +..+++++.++.+.+|+...++. +..+.+|...|.+++|+|++ ++|++++.||.|
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 12345689997 99999999999998888887765 67778899999999999998 899999999999
Q ss_pred EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE----EeCCCcEEEEeCCCCeEEEEeecCC
Q psy3640 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS----SSLDGTAKLWDVRTMCCFYTLKNHE 452 (616)
Q Consensus 377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~ 452 (616)
++||++... .......+..........+....... +.....+.+|+....+.+..+.+|.
T Consensus 243 ~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 243 RIFKITEKL----------------SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp EEEEEEECC-------------------------------------------------------CCSEEEEEEEEECTTS
T ss_pred EEEeCCCCc----------------CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 999997421 11111112222222222233222222 3344556777777788889999999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~ 484 (616)
..|++++|+|++++|++++.||.|++|++...
T Consensus 307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 99999999999999999999999999999865
No 97
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.3e-35 Score=293.35 Aligned_cols=248 Identities=23% Similarity=0.402 Sum_probs=202.8
Q ss_pred eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEEE
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKLW 255 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~iw 255 (616)
..+.+|.++|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|..+|.+++|+++ +. +++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4567999999999999999999999999999999998875 46788999999999999863 44 6799999999999
Q ss_pred eCCCCc--eEEEeeCCCCcEEEEEEeCC-CCCEEEEEECCCeEEEEeCCCcce---eEEeeecee---eEEEcCC-----
Q psy3640 256 DIKSGH--EICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWASAKEEC---IQTYRGHSA---EVTFSPD----- 321 (616)
Q Consensus 256 d~~~~~--~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~---~v~~~~~----- 321 (616)
|+.+++ ....+.+|...|.+++|+|. ++.+|++++.|++|++||+..+.. ...+.+|.. .++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 999874 66778899999999999943 278999999999999999987632 233344443 4578887
Q ss_pred ------------CCEEEEEeCCCcEEEEECCCC---ceeEEeecCCcCEEEEEEcCCC----CEEEEEECCCcEEEEecc
Q psy3640 322 ------------QSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSSDR----NMLITGSFDSSIVVWDIQ 382 (616)
Q Consensus 322 ------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~----~~l~~g~~dg~i~iwd~~ 382 (616)
+.+|++|+.|+.|++||++.+ +....+.+|...|.+++|+|++ ++|++++.|++|++|++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 468999999999999999765 4667788999999999999986 899999999999999986
Q ss_pred cccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy3640 383 YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR 440 (616)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 440 (616)
.... .......+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus 247 ~~~~------------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASS------------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTC------------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred Cccc------------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 3110 011123446688999999999999999999999999999975
No 98
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.2e-35 Score=302.19 Aligned_cols=277 Identities=17% Similarity=0.314 Sum_probs=229.0
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeccC------------CcEEEEEEcCCC
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH-----------EICTYRGHQ------------NVVYAVAFSEPY 241 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~I~~l~fs~~~ 241 (616)
.|.++|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 478999999999999999999999999999999887 577899998 889999999997
Q ss_pred --C-EEEEECCCcEEEEeCCCCceE---------------------------------------EE-eeCCCCcEEEEEE
Q psy3640 242 --G-CLTGSYDRTCKLWDIKSGHEI---------------------------------------CT-YRGHQNVVYAVAF 278 (616)
Q Consensus 242 --~-lls~s~d~~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V~~l~~ 278 (616)
. +++++.|++|++||+.++... .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 4 679999999999999775432 12 3689999999999
Q ss_pred eCCCCCEEEEEECCCeEEEEeCCC-cceeEE-------eeec---eeeEEEcCCC-CEEEEEeCCCcEEEEECCCCce--
Q psy3640 279 SEPYGDKILTGSFDKTLKLWASAK-EECIQT-------YRGH---SAEVTFSPDQ-STFCSCSMDHTARIFNTNSGQE-- 344 (616)
Q Consensus 279 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~-------~~~~---~~~v~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-- 344 (616)
+ +++++|++| .|+.|++||+.+ ++.... +.+| ...++|+|++ ..+++++.||.|++||+++++.
T Consensus 186 ~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 N-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp C-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred c-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 9 789999998 899999999994 444442 2334 3456899998 9999999999999999999887
Q ss_pred --eEEeecCCc------------CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 345 --MHTLKAHTG------------PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 345 --~~~~~~~~~------------~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
...+..|.. .|.+++|+|++++|++++. +.|++||++. ...++..+..|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~---------------~~~~~~~~~~~~ 327 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM---------------ENRPVETYQVHE 327 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC---------------CSSCSCCEESCG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC---------------Cccccceeeccc
Confidence 788888876 8999999999999999998 9999999973 145555666665
Q ss_pred cc---------------eeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------------------------
Q psy3640 411 QE---------------ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-------------------------- 449 (616)
Q Consensus 411 ~~---------------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------- 449 (616)
.. +..++|+|++++|++|+.||.|++||+.+++.+. +.
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccc
Confidence 32 2348999999999999999999999999987653 22
Q ss_pred -------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 450 -------NHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481 (616)
Q Consensus 450 -------~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 481 (616)
.+...|..++|+|++++||+++.++ +.+|..
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2235688999999999999998775 777764
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2e-34 Score=298.48 Aligned_cols=277 Identities=29% Similarity=0.516 Sum_probs=240.1
Q ss_pred eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSGQE 344 (616)
Q Consensus 266 ~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 344 (616)
..+|...|.++++ +++++++|+.||.|++||+.+++....+.+|...+ ++..+++.+++|+.||.|++||+.+++.
T Consensus 129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE
Confidence 3457778999886 58999999999999999999999999999888766 5666999999999999999999999999
Q ss_pred eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 345 ~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 424 (616)
+..+..|...|.+++|++ +.+++|+.||.|++||+.... .......+.+|...|.++.+ ++++
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~--~~~~ 268 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAAVNVVDF--DDKY 268 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSS-------------CCEEEEEECCCSSCEEEEEE--ETTE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCC-------------CceeeeEecCCCCcEEEEEe--CCCE
Confidence 999999999999999964 599999999999999997321 11223677889999999988 7889
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 504 (616)
+++|+.||.|++||+++++.+..+..|...|.+++++ +.++++++.||.|++||+.++
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-------------------- 326 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-------------------- 326 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------
T ss_pred EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--------------------
Confidence 9999999999999999999999999999999999884 678888888888888888653
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe---------e
Q psy3640 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE---------C 575 (616)
Q Consensus 505 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~---------~ 575 (616)
..+..+.+|...|++++| ++++|++|+.||.|++||+.+++ +
T Consensus 327 ---------------------------~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~ 377 (435)
T 1p22_A 327 ---------------------------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 377 (435)
T ss_dssp ---------------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred ---------------------------CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence 344556779999999998 78899999999999999998776 8
Q ss_pred eeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 576 ~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+..+.+|.++|.+++| ++++|++++.||+|++||+.+.
T Consensus 378 ~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 378 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred eeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 8899999999999999 7889999999999999999764
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=290.79 Aligned_cols=255 Identities=22% Similarity=0.347 Sum_probs=215.5
Q ss_pred hheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECC--CCcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEE
Q psy3640 179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCK 253 (616)
Q Consensus 179 ~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~ 253 (616)
....+.+|..+|++++|+|+|++||+|+.||.|+|||+. +++.+..+.+|...|++++|+++ +. +++++.|+.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 457889999999999999999999999999999999998 66777889999999999999977 66 55999999999
Q ss_pred EEeCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEe
Q psy3640 254 LWDIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCS 329 (616)
Q Consensus 254 iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~ 329 (616)
+||+.+++ .+..+..|...|.+++|+ |+ +.++++++.|+.|++||+.++...
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~----------------------- 138 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTT----------------------- 138 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCC-----------------------
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCce-----------------------
Confidence 99999997 778888899999999999 66 788888888888888887654321
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcC-------------CCCEEEEEECCCcEEEEecccccCCccccccccc
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS-------------DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 396 (616)
....+..|...|.+++|+| ++.++++++.||.|++||++....
T Consensus 139 --------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------- 194 (379)
T 3jrp_A 139 --------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---------- 194 (379)
T ss_dssp --------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT----------
T ss_pred --------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc----------
Confidence 1223456888999999999 699999999999999999973210
Q ss_pred ccCCcceEEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCe-----EEEEeecCCCCEEEEEEcCCCCEEE
Q psy3640 397 RASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMC-----CFYTLKNHEDEVLDIAFDYSGSKLA 468 (616)
Q Consensus 397 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~ 468 (616)
.......+.+|...|.+++|+|+ +.++++++.||.|++||++++. .......|...|.+++|+|++++|+
T Consensus 195 --~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 272 (379)
T 3jrp_A 195 --TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 272 (379)
T ss_dssp --EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred --ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence 12345677889999999999999 8999999999999999998863 2222234788999999999999999
Q ss_pred EEeCCCcEEEEecCC
Q psy3640 469 TASSDQTANLWTVGG 483 (616)
Q Consensus 469 ~~~~dg~i~iwd~~~ 483 (616)
+++.||.|++|++..
T Consensus 273 ~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 273 LSGGDNKVTLWKENL 287 (379)
T ss_dssp EEESSSSEEEEEEEE
T ss_pred EecCCCcEEEEeCCC
Confidence 999999999999864
No 101
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.5e-35 Score=289.42 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=207.2
Q ss_pred EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc--CCCE
Q psy3640 347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF--SNSM 424 (616)
Q Consensus 347 ~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~ 424 (616)
.+.+|...|.+++|+|+|++|++|+.|++|++||+... ....+..+.+|...|.+++|++ ++++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--------------~~~~~~~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG--------------GQILIADLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT--------------EEEEEEEEECCSSCEEEEEECCGGGSSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC--------------CcEEEEEEcCCCccEEEEEeCCCCCCCE
Confidence 34679999999999999999999999999999998621 1124567889999999999975 4899
Q ss_pred EEEEeCCCcEEEEeCCCC--eEEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCcee--eeeEEeccCCCe
Q psy3640 425 IASSSLDGTAKLWDVRTM--CCFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVE--LLQTFYGHSNEV 498 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~ 498 (616)
|++++.|++|++||++++ .....+.+|...|.+++|+|+ +.+|++++.|+.|++|++..... ....+..|.
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~--- 150 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT--- 150 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS---
T ss_pred EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc---
Confidence 999999999999999987 466778889999999999998 78999999999999999976422 122233333
Q ss_pred eeEEEEEEcCC-----------------CCEEEEEeCCCcEEEEecCCc--eEEeEEeeccccCEEEEEEecCC----CE
Q psy3640 499 SKVLDIAFDYS-----------------GSKLATASSDQTAKLWTVGGA--VELLQTFYGHSNEVSKVSFHPTG----KL 555 (616)
Q Consensus 499 ~~i~~~~~s~~-----------------~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~l~~spdg----~~ 555 (616)
..+.+++|+|+ +.+|++|+.|+.|++||+... ......+.+|...|.+++|+|++ ++
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 34667889887 478999999999999999753 25667788999999999999986 89
Q ss_pred EEEEECCCcEEEecCCcC---e-eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 556 VLSGSQDTTCRLWSTESG---E-CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 556 l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
|++|+.||+|++|++.+. + ....+..|.+.|.+++|+|++++||+++.||+|++|+..
T Consensus 231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999998763 1 234567789999999999999999999999999999975
No 102
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.9e-34 Score=286.21 Aligned_cols=295 Identities=13% Similarity=0.085 Sum_probs=234.3
Q ss_pred EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc---eeEEeeece---eeEEEcCCCC-EEEEEeCCCcEEEE
Q psy3640 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---CIQTYRGHS---AEVTFSPDQS-TFCSCSMDHTARIF 337 (616)
Q Consensus 265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~---~~v~~~~~~~-~l~~~~~dg~i~i~ 337 (616)
...+|.+.|++++|+ |++++|++++.|+.|++|++.+++ ......+|. ..++|+|++. ++++++.||.|++|
T Consensus 6 ~~~~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 6 IEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CSSCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred cccCCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 345799999999999 789999999999999999998877 233344444 4568999999 99999999999999
Q ss_pred EC-CCCceeEEeec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 338 NT-NSGQEMHTLKA--HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 338 d~-~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
|+ .+++. ..+.. |...|.+++|+| ++.+++++.|+.|++||++........ ....++..+. |...+.
T Consensus 85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~-~~~~v~ 154 (342)
T 1yfq_A 85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA-------VKNLNSNNTK-VKNKIF 154 (342)
T ss_dssp CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE-------EEESCSSSSS-SCCCEE
T ss_pred EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc-------ccCCeeeEEe-eCCceE
Confidence 99 77654 77788 999999999999 999999999999999998731000000 0022222333 778899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCC-Ce--EEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCc-----e
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRT-MC--CFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGA-----V 485 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-----~ 485 (616)
+++|++++ +++++.++.|++||+++ +. .......+...+.+++|+| +++++++++.||.+++|++... .
T Consensus 155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99999887 99999999999999988 43 3334456788999999999 9999999999999999998764 1
Q ss_pred eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcE
Q psy3640 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC 565 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i 565 (616)
.....+..+.... .-.+|...|++++|+|++++|++++.||.|
T Consensus 233 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 233 SKRFAFRCHRLNL-------------------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp TTCEEEECCCCCT-------------------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred ccceeeecccccc-------------------------------------cccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 2222121111100 001356699999999999999999999999
Q ss_pred EEecCCcCeeeeEeccC-cccEEEEEEeeCCCEEEEeeCCCc-EEEcc
Q psy3640 566 RLWSTESGECIQVLKAH-EDDVFSCGFNYNGDTIITASKDNT-CCIWR 611 (616)
Q Consensus 566 ~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~t~s~Dg~-i~vW~ 611 (616)
++||+.+++.+..+.+| .++|.+++ |++++|++++.||+ .+.|.
T Consensus 276 ~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 276 SCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred EEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 99999999999999998 99999999 99999999999999 43333
No 103
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=286.81 Aligned_cols=297 Identities=18% Similarity=0.260 Sum_probs=243.4
Q ss_pred EeCCCcceeEEeeecee---eEEEcCC---CCEEEEEeCCCcEEEEECCC-Ccee-EEeecCCcCEEEEEEcCCCCEEEE
Q psy3640 298 WASAKEECIQTYRGHSA---EVTFSPD---QSTFCSCSMDHTARIFNTNS-GQEM-HTLKAHTGPVISLQFSSDRNMLIT 369 (616)
Q Consensus 298 wd~~~~~~~~~~~~~~~---~v~~~~~---~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~v~~l~~~~~~~~l~~ 369 (616)
|+....+.+..+.+|.. .++|+|+ +++|++++.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 44555566666666654 4589999 59999999999999999997 5554 778899999999999999999999
Q ss_pred EECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE--ccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy3640 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTAKLWDVRTMCCFYT 447 (616)
Q Consensus 370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 447 (616)
++.||.|++||+. ... ......|...|.+++| ++++.++++++.||.|++||+++++.+..
T Consensus 104 ~~~dg~v~iwd~~----------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 104 ASCDKTAKMWDLS----------------SNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp EETTSEEEEEETT----------------TTE-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred EcCCCcEEEEEcC----------------CCC-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 9999999999996 333 3346779999999999 89999999999999999999999998888
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCC--CEEEEEeCCCcEEEE
Q psy3640 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG--SKLATASSDQTAKLW 525 (616)
Q Consensus 448 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~vw 525 (616)
+..+. .+.++.+. ...+++++.++.+.+|++......................+...+.. ..+++++.||.|++|
T Consensus 167 ~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~ 243 (368)
T 3mmy_A 167 LQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH 243 (368)
T ss_dssp EECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred EecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence 88654 56666666 45889999999999999988655554444433333333333333332 229999999999999
Q ss_pred ecCCce--EEeEEeecccc------------CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640 526 TVGGAV--ELLQTFYGHSN------------EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591 (616)
Q Consensus 526 d~~~~~--~~~~~~~~h~~------------~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 591 (616)
++.... .....+.+|.. +|++++|+|++++|++|+.||.|++||+.+++++..+.+|..+|.+++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 323 (368)
T 3mmy_A 244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF 323 (368)
T ss_dssp ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE
Confidence 997642 34556666765 7999999999999999999999999999999999999999999999999
Q ss_pred eeCCCEEEEeeCCCcEEEcccCC
Q psy3640 592 NYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 592 s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
+|++++|++++.|+..+.|++.+
T Consensus 324 s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 324 NHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CTTSSCEEEEECCCSTTCGGGCC
T ss_pred CCCCCeEEEEecccccccccccC
Confidence 99999999999998777776543
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.8e-34 Score=296.76 Aligned_cols=312 Identities=17% Similarity=0.283 Sum_probs=229.5
Q ss_pred CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL 348 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 348 (616)
|.+.|++++|+ |++++|++|+.||.|++||+.+++..... ..+ ..+....+
T Consensus 27 ~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------------~~~--------~~~~~~~~ 77 (447)
T 3dw8_B 27 EADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSH--------------------SRG--------EYNVYSTF 77 (447)
T ss_dssp GGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CC--------------------CCC--------CEEEEEEE
T ss_pred ccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------------ccc--------ceeEeccc
Confidence 56788888888 67888888888888888887765421100 000 01234556
Q ss_pred ecCC------------cCEEEEEEcCCC--CEEEEEECCCcEEEEecccccCCcccccccc-------------------
Q psy3640 349 KAHT------------GPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTRNAYAEST------------------- 395 (616)
Q Consensus 349 ~~~~------------~~v~~l~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~------------------- 395 (616)
.+|. ..|.+++|+|++ ..|++++.|+.|++||+..............
T Consensus 78 ~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 157 (447)
T 3dw8_B 78 QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVF 157 (447)
T ss_dssp ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEE
T ss_pred ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccc
Confidence 6676 889999999998 7999999999999999874321100000000
Q ss_pred ----cccCCcceEE-EecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEE-------EeecCCCCEEEEEEcC
Q psy3640 396 ----YRASHKPIHI-LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFY-------TLKNHEDEVLDIAFDY 462 (616)
Q Consensus 396 ----~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~~ 462 (616)
......+... ..+|...|.+++|+|+++++++| .|+.|++||+++ +.... .+..|...|.+++|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 236 (447)
T 3dw8_B 158 RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP 236 (447)
T ss_dssp EEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS
T ss_pred cchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC
Confidence 0000011112 36799999999999999999999 799999999994 44444 2557899999999999
Q ss_pred CC-CEEEEEeCCCcEEEEecCCceee---eeEEeccCCC---------eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 463 SG-SKLATASSDQTANLWTVGGAVEL---LQTFYGHSNE---------VSKVLDIAFDYSGSKLATASSDQTAKLWTVGG 529 (616)
Q Consensus 463 ~~-~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 529 (616)
++ .+|++++.||.|++||+...... ...+..+... ...+.+++|+|++++|++++. +.|++||+..
T Consensus 237 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 237 NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 98 99999999999999999876431 3444444321 026889999999999999999 9999999987
Q ss_pred ceEEeEEeeccccC---------------EEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-------------
Q psy3640 530 AVELLQTFYGHSNE---------------VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA------------- 581 (616)
Q Consensus 530 ~~~~~~~~~~h~~~---------------v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------- 581 (616)
....+..+.+|... +..++|+|++++|++|+.||.|++||+.+++.+. +.+
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 316 ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKP 394 (447)
T ss_dssp CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCC
T ss_pred CccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCC
Confidence 44666777777542 3349999999999999999999999999988763 222
Q ss_pred --------------------CcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 582 --------------------HEDDVFSCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 582 --------------------h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
+...|.+++|+|++++||+++.++ +++|..+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 235688999999999999998886 7777654
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.6e-33 Score=280.40 Aligned_cols=307 Identities=20% Similarity=0.224 Sum_probs=223.9
Q ss_pred EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc----ceeEEeeecee---eEEEcC--CCCEEEEEeCCCcE
Q psy3640 264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQTYRGHSA---EVTFSP--DQSTFCSCSMDHTA 334 (616)
Q Consensus 264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~---~v~~~~--~~~~l~~~~~dg~i 334 (616)
..+.+|.+.|++++|+ +++++|++++.||.|++||+.++ +....+.+|.. .++|+| ++.+|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4567899999999999 78999999999999999999876 35566666654 458999 69999999999999
Q ss_pred EEEECCCC---------ceeEEeecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640 335 RIFNTNSG---------QEMHTLKAHTGPVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403 (616)
Q Consensus 335 ~i~d~~~~---------~~~~~~~~~~~~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 403 (616)
++||+.++ +.+..+..|...|.+++|+|+ ++++++++.||.|++||++.............. ....
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~ 160 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM---KVLS 160 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE---ESCS
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc---cccc
Confidence 99999887 557888899999999999999 999999999999999999754322111100000 0000
Q ss_pred EEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCeE--EEEeecCCCCEEEEEEcCCC----CEEEEEeCCC
Q psy3640 404 HILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMCC--FYTLKNHEDEVLDIAFDYSG----SKLATASSDQ 474 (616)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~~~~~dg 474 (616)
.....+...+.+++|+|+ +..+++++.++.+.+|+...+.. +..+.+|...|.+++|+|++ ++|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 111257788999999997 99999999999999888887765 67778899999999999998 8999999999
Q ss_pred cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe----CCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS----SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH 550 (616)
Q Consensus 475 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s 550 (616)
.|++||+........... ..........++....++.+. ....+.+|+... ...+..+.+|...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEE----SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC-------------------------------------------CCSEE-EEEEEEECTTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccCC----cccceeccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEc
Confidence 999999976433222111 111122233333444443333 334445555444 46777888999999999999
Q ss_pred cCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640 551 PTGKLVLSGSQDTTCRLWSTESGECIQVL 579 (616)
Q Consensus 551 pdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 579 (616)
|++++|++|+.||.|++|++.+++.+..+
T Consensus 316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 316 LTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 99999999999999999999988655433
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=282.20 Aligned_cols=255 Identities=22% Similarity=0.330 Sum_probs=218.7
Q ss_pred ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-
Q psy3640 343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS- 421 (616)
Q Consensus 343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 421 (616)
+.+..+.+|...|.+++|+|++++|++|+.||.|++||+... .......+.+|...|.+++|+++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~ 67 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPK 67 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCGG
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------cceeeeEecCCCCcEEEEEeCCCC
Confidence 456677899999999999999999999999999999998621 34556678899999999999977
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceee-eeEEeccC
Q psy3640 422 -NSMIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVEL-LQTFYGHS 495 (616)
Q Consensus 422 -~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~ 495 (616)
+.+|++++.||.|++||+.+++ ....+..|...|.+++|+|+ +.++++++.|+.|++||+...... ...+..+.
T Consensus 68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 9999999999999999999987 77788889999999999999 999999999999999999876332 22333443
Q ss_pred CCeeeEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCc---eEEeEEeeccccCEEEEEEecC---CCEE
Q psy3640 496 NEVSKVLDIAFDY-------------SGSKLATASSDQTAKLWTVGGA---VELLQTFYGHSNEVSKVSFHPT---GKLV 556 (616)
Q Consensus 496 ~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~l~~spd---g~~l 556 (616)
..+.+++|+| ++.++++++.||.|++||+... ......+.+|...|++++|+|+ +++|
T Consensus 148 ---~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 148 ---IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp ---TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred ---CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 3478899999 6999999999999999998654 2456678889999999999999 8999
Q ss_pred EEEECCCcEEEecCCcCe-----eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 557 LSGSQDTTCRLWSTESGE-----CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 557 ~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
++++.||.|++||+.++. .+.....|...|.+++|+|++++|++++.||.|++|++..
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 999999999999999874 2223344889999999999999999999999999999863
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-33 Score=288.85 Aligned_cols=288 Identities=18% Similarity=0.297 Sum_probs=233.7
Q ss_pred eEEEcCCCCEEE-EEeCCCcEEEEECCCC----ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCc
Q psy3640 315 EVTFSPDQSTFC-SCSMDHTARIFNTNSG----QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTR 388 (616)
Q Consensus 315 ~v~~~~~~~~l~-~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~ 388 (616)
.++++|+...++ +++.+|.|++|++... .....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.......
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~ 118 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL 118 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence 356777665444 4678899999998654 23455778999999999999 89999999999999999997321110
Q ss_pred ccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe--ecCCCCEEEEEEcCCCC
Q psy3640 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTL--KNHEDEVLDIAFDYSGS 465 (616)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~ 465 (616)
....++..+.+|...|.+++|+|++ .++++++.||.|++||+++++.+..+ ..|...|.+++|+|+++
T Consensus 119 ---------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 119 ---------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp ---------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred ---------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 0115677889999999999999998 69999999999999999999999999 78999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE---eCCCcEEEEecCCceEEeEEe-eccc
Q psy3640 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA---SSDQTAKLWTVGGAVELLQTF-YGHS 541 (616)
Q Consensus 466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~-~~h~ 541 (616)
+|++++.||.|++||+............+... .+..++|+|++.++++| +.|+.|++||+.+........ ..|.
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCSS--SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred EEEEEecCCcEEEEeCCCCceeeeeccCCCCC--cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence 99999999999999998875443332444432 35678999999999999 799999999998754433332 3577
Q ss_pred cCEEEEEEecCCCEEEE-EECCCcEEEecCCcCee-eeEecc--CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 542 NEVSKVSFHPTGKLVLS-GSQDTTCRLWSTESGEC-IQVLKA--HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 542 ~~v~~l~~spdg~~l~s-~s~dg~i~iwd~~~~~~-~~~~~~--h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
..+.+++|+|++++|++ |+.||.|++||+.+++. +..+.. |..+|.+++|+|++.++++ .|+.+++|++.+.
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 88999999999999975 45799999999999884 555544 4588999999999988764 5679999998753
No 108
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.8e-32 Score=275.27 Aligned_cols=278 Identities=13% Similarity=0.135 Sum_probs=222.3
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeC
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDI 257 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~ 257 (616)
+..+.+|..+|++++|+|||++||+|+.+| ++|||+.+++....... ..+..+++.+++.++ +++.|++|++||+
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 345688999999999999999999998775 78999988776655443 357788888887744 6778899999999
Q ss_pred CCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeeceeeEEEcCCCCEEEE--EeCCCcE
Q psy3640 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSAEVTFSPDQSTFCS--CSMDHTA 334 (616)
Q Consensus 258 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~l~~--~~~dg~i 334 (616)
.+++.+..+. |...|.+++|+ + +.++++ .|+.|++||+.++ +.+..+......+++++ ..+++ |+.+|.|
T Consensus 89 ~~~~~~~~~~-~~~~v~~v~~~-~--~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 89 VKKQDVSRIK-VDAPVKDLFLS-R--EFIVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TTTEEEEEEE-CSSCEEEEEEC-S--SEEEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCE
T ss_pred CCCcEEEEEE-CCCceEEEEEc-C--CEEEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEE
Confidence 9999999887 67799999998 3 445554 4789999999998 77776666444557777 66666 5789999
Q ss_pred EEEECCCCc----------------eeEEeecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccc
Q psy3640 335 RIFNTNSGQ----------------EMHTLKAHTGPVISLQFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYR 397 (616)
Q Consensus 335 ~i~d~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~ 397 (616)
++||+.+++ .+..+.+|..+|.+++|+|++++|++|+.|++ |++||++
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~--------------- 226 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE--------------- 226 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT---------------
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence 999999865 26788999999999999999999999999998 9999998
Q ss_pred cCCcceEEEe-c-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE--EEe--------------------e-cCC
Q psy3640 398 ASHKPIHILT-G-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF--YTL--------------------K-NHE 452 (616)
Q Consensus 398 ~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--------------------~-~~~ 452 (616)
....+..+. + |...|.+++|+|++++|++++.|+.|++||++.+... ..+ . ...
T Consensus 227 -~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 227 -DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp -TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred -CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 677778887 5 9999999999999999999999999999999764211 111 0 112
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
.....++|+++++.+++++.||.+++|++..
T Consensus 306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 306 VRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp CCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred CCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 2346789999999999999999999999854
No 109
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-32 Score=281.81 Aligned_cols=279 Identities=16% Similarity=0.280 Sum_probs=233.3
Q ss_pred cceEEEEECCCCCEEE-EEECCCcEEEEECCCCc----EEEEEeccCCcEEEEEEcC-CCCE-EEEECCCcEEEEeCCCC
Q psy3640 188 LPLTNITFDKFGTRCL-TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSE-PYGC-LTGSYDRTCKLWDIKSG 260 (616)
Q Consensus 188 ~~i~~v~~s~~g~~la-sgs~dg~i~iwd~~~~~----~~~~~~~h~~~I~~l~fs~-~~~l-ls~s~d~~I~iwd~~~~ 260 (616)
.....++++|+...++ +++.||.|+||++.+.. ....+.+|.+.|++++|+| ++.+ ++++.||+|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 3455789999876544 57889999999996652 3456789999999999999 7774 58999999999999988
Q ss_pred -------ceEEEeeCCCCcEEEEEEeCCCC-CEEEEEECCCeEEEEeCCCcceeEEe--eece---eeEEEcCCCCEEEE
Q psy3640 261 -------HEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTY--RGHS---AEVTFSPDQSTFCS 327 (616)
Q Consensus 261 -------~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~---~~v~~~~~~~~l~~ 327 (616)
+.+..+.+|...|.+++|+ |++ +.+++++.|+.|++||+.+++.+..+ .+|. ..++|+|++.++++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 6788999999999999999 555 79999999999999999999999888 5555 44689999999999
Q ss_pred EeCCCcEEEEECCCCceeEEe-ecCCcC-EEEEEEcCCCCEEEEE---ECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640 328 CSMDHTARIFNTNSGQEMHTL-KAHTGP-VISLQFSSDRNMLITG---SFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402 (616)
Q Consensus 328 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 402 (616)
++.||.|++||+++++.+..+ ..|.+. +.+++|+|++.++++| +.|+.|++||++.. ..+
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~---------------~~~ 258 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL---------------EEP 258 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC---------------SSC
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc---------------cCC
Confidence 999999999999999999988 678776 8999999999999999 78999999999732 122
Q ss_pred eEE-EecCccceeEEEEccCCCEEEE-EeCCCcEEEEeCCCCeE-EEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640 403 IHI-LTGHSQEISNCLFNFSNSMIAS-SSLDGTAKLWDVRTMCC-FYTLKN--HEDEVLDIAFDYSGSKLATASSDQTAN 477 (616)
Q Consensus 403 ~~~-~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~ 477 (616)
... ...+...+..++|+|+++.+++ |+.||.|++||+.+++. +..+.. +...|.+++|+|++.++++ .++.++
T Consensus 259 ~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~ 336 (402)
T 2aq5_A 259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR 336 (402)
T ss_dssp SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence 222 2356778999999999999875 55799999999998873 444443 5689999999999988764 566999
Q ss_pred EEecCCc
Q psy3640 478 LWTVGGA 484 (616)
Q Consensus 478 iwd~~~~ 484 (616)
+|++...
T Consensus 337 ~~~l~~~ 343 (402)
T 2aq5_A 337 FYKLHER 343 (402)
T ss_dssp EEEEETT
T ss_pred EEEcCCC
Confidence 9999765
No 110
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=2.5e-31 Score=304.62 Aligned_cols=408 Identities=10% Similarity=0.082 Sum_probs=305.0
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECC------CcEEEEECCCCcEEEEEeccCCcE-------EEEEEcCCCCEE-E
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYD------RTCKLWDIKSGHEICTYRGHQNVV-------YAVAFSEPYGCL-T 245 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~h~~~I-------~~l~fs~~~~ll-s 245 (616)
.+.+.+|...+.+++|||||++||+++.+ ..|.+||+.+++ ...+..|...+ ..++|+||++++ +
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 35677899999999999999999988653 379999998876 56788899888 999999999955 4
Q ss_pred EECC------CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEEC------------CCeEEEEeCCCcceeE
Q psy3640 246 GSYD------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF------------DKTLKLWASAKEECIQ 307 (616)
Q Consensus 246 ~s~d------~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~ 307 (616)
++.+ ..|.+|++.+++...... +. ...++|+ | + .+++++. +...++|....+....
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~--~~~~~~s-p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~ 197 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNL-GP--ATHILFA-D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK 197 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCS-CS--CSEEEEE-T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecC-CC--cceeeeC-C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeE
Confidence 4433 358888888877543333 32 3467799 5 6 8888763 3345666543333334
Q ss_pred Eeeece---eeEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccc
Q psy3640 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY 383 (616)
Q Consensus 308 ~~~~~~---~~v~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~ 383 (616)
.+.+|. ..+.|+++ ..+++++.++.+.+|.+.. +.....+..|. .+...+|+|+|+.++++. ++.|++||+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc
Confidence 444443 44578888 6667778889899997653 44455565554 456779999999998885 89999999831
Q ss_pred ccCCcccccccccccCCcceEEEecCccceeEEEEc-cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC-CEEEEEEc
Q psy3640 384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN-FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED-EVLDIAFD 461 (616)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~ 461 (616)
.. .. .... ...........|...+..++|+ |+++.+++++ ++.+.+|++.++... .+..+.. .+..++|+
T Consensus 275 ~~-l~-~l~~----~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s 346 (1045)
T 1k32_A 275 EK-IE-KIEI----GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD 346 (1045)
T ss_dssp CC-EE-ECCC----CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS
T ss_pred eE-ee-eecc----CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc
Confidence 10 00 0000 0000000112245578999999 9999999888 789999999887654 3556666 89999999
Q ss_pred CCCCEEEEEeCCCcEE-EEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc
Q psy3640 462 YSGSKLATASSDQTAN-LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH 540 (616)
Q Consensus 462 ~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 540 (616)
+|+.++.++.++.+. +|++.+.... .+..+ ...+..++|+|+|++|++++.++.+++||+.++ +......+|
T Consensus 347 -dg~~l~~~s~~~~l~~~~d~~~~~~~--~l~~~---~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~ 419 (1045)
T 1k32_A 347 -TKVAFIHGTREGDFLGIYDYRTGKAE--KFEEN---LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSR 419 (1045)
T ss_dssp -SEEEEEEEETTEEEEEEEETTTCCEE--ECCCC---CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECS
T ss_pred -CCCeEEEEECCCceEEEEECCCCCce--EecCC---ccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCC
Confidence 999999999888888 8898765321 22222 245778999999999999999999999999875 455556689
Q ss_pred ccCEEEEEEecCCCEEEEEECCC----------cEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEc
Q psy3640 541 SNEVSKVSFHPTGKLVLSGSQDT----------TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610 (616)
Q Consensus 541 ~~~v~~l~~spdg~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW 610 (616)
...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence 99999999999999999887654 89999999888 67788888889999999999999999998888888
Q ss_pred ccC
Q psy3640 611 RSM 613 (616)
Q Consensus 611 ~~~ 613 (616)
+..
T Consensus 499 ~~~ 501 (1045)
T 1k32_A 499 DRV 501 (1045)
T ss_dssp CSS
T ss_pred chh
Confidence 754
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=309.20 Aligned_cols=252 Identities=22% Similarity=0.349 Sum_probs=212.4
Q ss_pred heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECC--CCcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEE
Q psy3640 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKL 254 (616)
Q Consensus 180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~i 254 (616)
...+.+|.++|++++|+|+|++|++|+.||+|+|||+. +++....+.+|.++|++++|+++ +. +++++.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35788999999999999999999999999999999998 55778889999999999999987 66 559999999999
Q ss_pred EeCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcc--eeEEeeece---eeEEEcC-----
Q psy3640 255 WDIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEE--CIQTYRGHS---AEVTFSP----- 320 (616)
Q Consensus 255 wd~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~---~~v~~~~----- 320 (616)
||+.+++ .+..+.+|...|.+++|+ |+ ++.+++|+.||.|++||+.++. ....+.+|. ..++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 9999987 778888999999999999 66 8999999999999999998873 334444444 4558999
Q ss_pred --------CCCEEEEEeCCCcEEEEECCCC----ceeEEeecCCcCEEEEEEcCC---CCEEEEEECCCcEEEEeccccc
Q psy3640 321 --------DQSTFCSCSMDHTARIFNTNSG----QEMHTLKAHTGPVISLQFSSD---RNMLITGSFDSSIVVWDIQYQF 385 (616)
Q Consensus 321 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~---~~~l~~g~~dg~i~iwd~~~~~ 385 (616)
++..+++|+.||.|++||++++ .....+.+|..+|.+++|+|+ ++++++++.||.|++||++...
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 5899999999999999999877 556777889999999999999 8999999999999999997431
Q ss_pred CCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q psy3640 386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC 443 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 443 (616)
.. ..........|...+.+++|+|++.++++++.||.|++||+.++.
T Consensus 241 ~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 241 GP-----------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SC-----------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Cc-----------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 11 111223335578899999999999999999999999999998643
No 112
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=3.8e-31 Score=303.15 Aligned_cols=395 Identities=12% Similarity=0.075 Sum_probs=306.7
Q ss_pred CCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEEC------CCcEEEEeCC
Q psy3640 186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSY------DRTCKLWDIK 258 (616)
Q Consensus 186 h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~------d~~I~iwd~~ 258 (616)
+...+.+.+||| +.||.++. +.|.+|++.+++. ..+.+|...+.+++|||||+.+ .++. +..|++||+.
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~ 88 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE 88 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence 566789999995 58888776 6899999988764 5778899999999999999955 3432 2489999998
Q ss_pred CCceEEEeeCCCCcE-------EEEEEeCCCCCEEEEEECC------CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEE
Q psy3640 259 SGHEICTYRGHQNVV-------YAVAFSEPYGDKILTGSFD------KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTF 325 (616)
Q Consensus 259 ~~~~~~~~~~h~~~V-------~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l 325 (616)
+++ ...+..|...+ ..++|+ |+++.+++++.+ ..|..|++.+++.......+...++|+| + .+
T Consensus 89 ~g~-~~~lt~~~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l 164 (1045)
T 1k32_A 89 NGE-IKRITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RR 164 (1045)
T ss_dssp TTE-EEECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EE
T ss_pred CCC-eEEcccCCCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EE
Confidence 887 56788898888 999999 788877777654 4688888887776554455556678999 7 88
Q ss_pred EEEeC------------CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640 326 CSCSM------------DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 326 ~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
++++. +....+|....+.....+..|...+.++.|+++ .++++++.++.+.+|.+..
T Consensus 165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~---------- 233 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDL---------- 233 (1045)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEET----------
T ss_pred EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeC----------
Confidence 87753 234566654333455666889999999999988 6677778889999998762
Q ss_pred cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----------CCCCEEEEEEc-
Q psy3640 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-----------HEDEVLDIAFD- 461 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~- 461 (616)
.......+..+. .+...+|+|+|+.++.+. ++.|++||+.... +..+.. +...+.+++|+
T Consensus 234 -----~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~ 305 (1045)
T 1k32_A 234 -----DGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSP 305 (1045)
T ss_dssp -----TSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred -----CCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecC
Confidence 122333444444 456779999999988874 8899999995543 335443 23468899999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEE-EEecCCceEEeEEeecc
Q psy3640 462 YSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK-LWTVGGAVELLQTFYGH 540 (616)
Q Consensus 462 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~h 540 (616)
|+|+.+++++ ++.+.+|+....... .+..+. ...+..++|+ +|+.++.++.++.+. +|+..++. .. .+.+|
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~~~~--~~~~~~--~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~-~l~~~ 377 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGTYVL--KVPEPL--RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AE-KFEEN 377 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSSBEE--ECSCCS--CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EE-ECCCC
T ss_pred CCCCEEEEEE-cCEEEEEcCCCCceE--EccCCC--cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ce-EecCC
Confidence 9999999887 789999998765322 122222 1257789999 999999999988888 99987743 22 33478
Q ss_pred ccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCC----------cEEEc
Q psy3640 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDN----------TCCIW 610 (616)
Q Consensus 541 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg----------~i~vW 610 (616)
...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++ .|++|
T Consensus 378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~ 457 (1045)
T 1k32_A 378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY 457 (1045)
T ss_dssp CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence 88999999999999999999999999999999998888888999999999999999999887654 89999
Q ss_pred ccCCC
Q psy3640 611 RSMNR 615 (616)
Q Consensus 611 ~~~~~ 615 (616)
|+.+.
T Consensus 458 d~~~g 462 (1045)
T 1k32_A 458 DMEGR 462 (1045)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98753
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=276.82 Aligned_cols=350 Identities=12% Similarity=0.011 Sum_probs=238.9
Q ss_pred CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCc---eEEEeeCCCCcEEEEEEe--CCCCCEEEEEECCCeE-E------
Q psy3640 229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFS--EPYGDKILTGSFDKTL-K------ 296 (616)
Q Consensus 229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~---~~~~~~~h~~~V~~l~~~--~~~~~~l~s~s~dg~i-~------ 296 (616)
..++.+++|++++++++++.++.|++||+.+|+ .+..+..+........+. +..+..+.....+..- +
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357889999999998888889999999999999 777777665433333221 1112222222111100 0
Q ss_pred ----EEeCC-CcceeEEeeeceeeEEEcCCCCEE-EEEeCCCcEEEEECC--CCceeEEee--cCCcCEEEEEEcCCCCE
Q psy3640 297 ----LWASA-KEECIQTYRGHSAEVTFSPDQSTF-CSCSMDHTARIFNTN--SGQEMHTLK--AHTGPVISLQFSSDRNM 366 (616)
Q Consensus 297 ----iwd~~-~~~~~~~~~~~~~~v~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~l~~~~~~~~ 366 (616)
.|... .+.......+....++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 00000 000000112234567899999996 889899999999999 888888876 56789999999999999
Q ss_pred EEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCe
Q psy3640 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMC 443 (616)
Q Consensus 367 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 443 (616)
|++|+.+|.+++|++...... ..+...+.+|...|.+++|+|+ +++|++++.|+.|++||+++++
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEE------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCS------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred EEEEeCCCcEEEEecCCcccc------------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence 999999999999998732110 0033356789999999999999 9999999999999999999998
Q ss_pred EEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcE
Q psy3640 444 CFYT-LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522 (616)
Q Consensus 444 ~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 522 (616)
.+.. +.+|...|.+++|+ ++.+|++++.|+.|++||+.++... ..+..+... .. +.+....
T Consensus 232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~-~~---~~~~~~~------------ 293 (450)
T 2vdu_B 232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLI-KP---YLNDQHL------------ 293 (450)
T ss_dssp CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHH-GG---GCCTTSB------------
T ss_pred eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhh-hh---hhhhccc------------
Confidence 8877 55899999999999 9999999999999999999876432 222211000 00 0000000
Q ss_pred EEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecC--CcC---eeeeEeccCcccEEEEEEeeCCC
Q psy3640 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWST--ESG---ECIQVLKAHEDDVFSCGFNYNGD 596 (616)
Q Consensus 523 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~h~~~V~~l~~s~~~~ 596 (616)
............+...|.+++|+|++++|++++ .|+.|++|++ .++ +.+..+..| +.|.+++|+|++.
T Consensus 294 -----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~ 367 (450)
T 2vdu_B 294 -----APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF 367 (450)
T ss_dssp -----C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE
T ss_pred -----ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE
Confidence 000000001113456799999999999999999 8999999999 666 778888888 8899999999644
Q ss_pred EEEEeeC------CCcEEEcccCC
Q psy3640 597 TIITASK------DNTCCIWRSMN 614 (616)
Q Consensus 597 ~l~t~s~------Dg~i~vW~~~~ 614 (616)
++++++. ++.|.+|.+..
T Consensus 368 ~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 368 QVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEECCTTCCSSCCCSEEEEEEET
T ss_pred EEEEecccCCCCCCcceEEEEEEc
Confidence 4444443 55689988754
No 114
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.3e-31 Score=268.99 Aligned_cols=305 Identities=13% Similarity=0.152 Sum_probs=214.8
Q ss_pred EEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEE-EEEEC
Q psy3640 213 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSF 291 (616)
Q Consensus 213 iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~ 291 (616)
||++.+.+.+..+.+|...|.+++|+||+.+++++.+..+++||+.+++.......+ .+..+++. ++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR--HLSKVRML-HRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS--CCCEEEEC-TTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC--CeEEEEEc-CCCCEEEEEECC
Confidence 577777888888899999999999999999887777777999999988776655433 47777887 555655 67788
Q ss_pred CCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCEEEEEEcCCCCEEE
Q psy3640 292 DKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSG-QEMHTLKAHTGPVISLQFSSDRNMLI 368 (616)
Q Consensus 292 dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~ 368 (616)
|++|++||..+++.+..+..+.. .++++++ .++++ .++.|++||+.++ +.+..+.. +...+++++ ..++
T Consensus 80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred ccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 89999999999998888764443 3456554 45544 4789999999988 66666554 444566666 5666
Q ss_pred E--EECCCcEEEEecccccCCcccccccccccCCcc-eEEEecCccceeEEEEccCCCEEEEEeCCCc-EEEEeCCCCeE
Q psy3640 369 T--GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP-IHILTGHSQEISNCLFNFSNSMIASSSLDGT-AKLWDVRTMCC 444 (616)
Q Consensus 369 ~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~ 444 (616)
+ |+.||.|++||+.......... .........+ ...+.+|...|.+++|+|++++|++|+.|++ |++||++++++
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~-~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQD-QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCcccccc-ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5789999999997432110000 0000001123 6788999999999999999999999999998 99999999999
Q ss_pred EEEee-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEE-------------------eccCCCeeeEEE
Q psy3640 445 FYTLK-N-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF-------------------YGHSNEVSKVLD 503 (616)
Q Consensus 445 ~~~~~-~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~i~~ 503 (616)
+..+. + |...|.+++|+|++++|++++.|++|++||+.......... .-..........
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK 310 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence 99998 5 99999999999999999999999999999997542111100 000111112256
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 504 IAFDYSGSKLATASSDQTAKLWTVGG 529 (616)
Q Consensus 504 ~~~s~~~~~l~~~~~dg~i~vwd~~~ 529 (616)
++|+++++++++++.||.+++|++..
T Consensus 311 ~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 311 IAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp EEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 89999999999999999999998743
No 115
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=2.7e-30 Score=267.40 Aligned_cols=296 Identities=10% Similarity=0.134 Sum_probs=240.7
Q ss_pred eEEEEeCCCc--ceeEEeeece--eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EeecCCcCEEEEEEcCCC
Q psy3640 294 TLKLWASAKE--ECIQTYRGHS--AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH-----TLKAHTGPVISLQFSSDR 364 (616)
Q Consensus 294 ~i~iwd~~~~--~~~~~~~~~~--~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~l~~~~~~ 364 (616)
.|..||..++ +.+..+..+. ..++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence 4444444334 4555554333 356899977777888888999999999998887 345788899999999999
Q ss_pred CEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCe
Q psy3640 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMC 443 (616)
Q Consensus 365 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 443 (616)
.++++++.|+.|++||++ .......+..|...+.+++|+|+++.+++++ .++.|++||+++++
T Consensus 182 ~~~~s~~~d~~v~~~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~ 245 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLK----------------TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL 245 (433)
T ss_dssp EEEEEEGGGTEEEEEETT----------------TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred EEEEEECCCCEEEEEECC----------------CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence 999999999999999997 6677777888899999999999999885554 78999999999999
Q ss_pred EEEEeecCCCCEEEEEEcCCCCEEEEEe--------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE-E
Q psy3640 444 CFYTLKNHEDEVLDIAFDYSGSKLATAS--------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL-A 514 (616)
Q Consensus 444 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~ 514 (616)
.+..+.. ...+.+++|+|+++.+++++ .|+.|++||+.+...... . .+ ...+..++|+|+++.+ +
T Consensus 246 ~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~-~~---~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 246 EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-I-GP---PGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-E-EE---EECEEEEEECSSTTEEEE
T ss_pred EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-c-cC---CCCcceEEECCCCCEEEE
Confidence 8888765 45699999999999999888 588999999987643322 2 11 2246789999999765 5
Q ss_pred EEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEEC---------------CCcEEEecCCcCeeeeEe
Q psy3640 515 TASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ---------------DTTCRLWSTESGECIQVL 579 (616)
Q Consensus 515 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~ 579 (616)
+++.++.|++||+.+. +....+. +...+.+++|+|+|++|++++. ||.|++||+.+++.+..+
T Consensus 320 ~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 6688999999999875 4444443 7788999999999999998876 579999999999999888
Q ss_pred ccCcccEEEEEEeeCCCEEEEeeC-CCcEEEcccCC
Q psy3640 580 KAHEDDVFSCGFNYNGDTIITASK-DNTCCIWRSMN 614 (616)
Q Consensus 580 ~~h~~~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~~ 614 (616)
..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus 398 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 398 EAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred cCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 864 56899999999999998875 99999999864
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.7e-31 Score=250.32 Aligned_cols=291 Identities=10% Similarity=0.096 Sum_probs=206.4
Q ss_pred EEEEEEcCCCC---EEEEECCCcEEEEeCCCC---ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce
Q psy3640 232 VYAVAFSEPYG---CLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC 305 (616)
Q Consensus 232 I~~l~fs~~~~---lls~s~d~~I~iwd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 305 (616)
+.++.|-..+- .+.......|++|+..++ +.++++..|..+|..+.+.|...+++..+-.. ++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~---- 110 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN-------LE---- 110 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-------SS----
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-------cc----
Confidence 34444543333 556667889999999999 89999999999999999995444444433321 11
Q ss_pred eEEeeeceeeEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEE
Q psy3640 306 IQTYRGHSAEVTFSPD----QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS--FDSSIVVW 379 (616)
Q Consensus 306 ~~~~~~~~~~v~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~--~dg~i~iw 379 (616)
......++++|+ +..+++++.+ +.+|++.+++ ++.+++ .|+.|++|
T Consensus 111 ----~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~----------------------lv~ss~~g~d~~V~~~ 162 (356)
T 2w18_A 111 ----IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRR----------------------LVSSSGTLSDQQVEVM 162 (356)
T ss_dssp ----EEEEEEECC------CCEEEEEEEEE--EEEEEETTTE----------------------EEEEESSSTTCEEEEE
T ss_pred ----ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCc----------------------EEEecccCCCCcEEEE
Confidence 123345679999 8889987744 6667554333 333322 36666666
Q ss_pred ecccccCCcccccccccccCCcceEEEecCccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC---C
Q psy3640 380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF---SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE---D 453 (616)
Q Consensus 380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~ 453 (616)
++.. .++.+..+..|...+..++|++ ++..|++++.|++|++||+++++++.++.+|. .
T Consensus 163 ~~s~---------------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 163 TFAE---------------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA 227 (356)
T ss_dssp EECT---------------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred EECC---------------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence 6641 3445556678888999999999 77999999999999999999999999998654 3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533 (616)
Q Consensus 454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~ 533 (616)
.+.+++|+|+|.++++++.+.. +| .+++|+.|++|++||..++ ..
T Consensus 228 ~v~~vafSpdG~~lvs~s~~~~--~w--------------------------------~laSGs~D~tIklWd~~tg-k~ 272 (356)
T 2w18_A 228 SVCHKAYSEMGLLFIVLSHPCA--KE--------------------------------SESLRSPVFQLIVINPKTT-LS 272 (356)
T ss_dssp CCEEEEEEETTEEEEEEC----------------------------------------------CCEEEEEEETTTT-EE
T ss_pred eeEEEEECCCCCEEEEeccCCC--cc--------------------------------eeeccCCCcEEEEEECCCC-EE
Confidence 5778899999999888765422 23 3567788999999998875 33
Q ss_pred eEEe-----eccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEE-EEEEeeCCCEEEEeeCCCcE
Q psy3640 534 LQTF-----YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF-SCGFNYNGDTIITASKDNTC 607 (616)
Q Consensus 534 ~~~~-----~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~t~s~Dg~i 607 (616)
+..+ .+|...+.+..+ ++.++|+|+.|++|+|||+.+++++.++.+|.+.+. .++|+|||++|++|+.|++|
T Consensus 273 l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 273 VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 3332 366666544444 488999999999999999999999999999988765 58999999999999999999
Q ss_pred EEcccC
Q psy3640 608 CIWRSM 613 (616)
Q Consensus 608 ~vW~~~ 613 (616)
+|||+.
T Consensus 351 klWd~~ 356 (356)
T 2w18_A 351 FVYHYS 356 (356)
T ss_dssp EEEEEC
T ss_pred EEecCC
Confidence 999963
No 117
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-31 Score=273.99 Aligned_cols=276 Identities=11% Similarity=0.076 Sum_probs=228.2
Q ss_pred CcceEEEEECCCCCEEEEEECCCcEEEEECCCCc---EEEEEec------------------------------------
Q psy3640 187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH---EICTYRG------------------------------------ 227 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~---~~~~~~~------------------------------------ 227 (616)
..++++++|+|+|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3589999999999976666 47799999999998 6665553
Q ss_pred ------------------cCCcEEEEEEcCCCCE--EEEECCCcEEEEeCC--CCceEEEee--CCCCcEEEEEEeCCCC
Q psy3640 228 ------------------HQNVVYAVAFSEPYGC--LTGSYDRTCKLWDIK--SGHEICTYR--GHQNVVYAVAFSEPYG 283 (616)
Q Consensus 228 ------------------h~~~I~~l~fs~~~~l--ls~s~d~~I~iwd~~--~~~~~~~~~--~h~~~V~~l~~~~~~~ 283 (616)
|.+.|.+++|+|++++ ++++.|+.|++||+. +++.+..+. .|...|.+++|+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCC
Confidence 3337999999999995 377799999999999 888888876 577899999999 889
Q ss_pred CEEEEEECCCeEEEEeCCCcceeE----Eeeece---eeEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-eecCC
Q psy3640 284 DKILTGSFDKTLKLWASAKEECIQ----TYRGHS---AEVTFSPD---QSTFCSCSMDHTARIFNTNSGQEMHT-LKAHT 352 (616)
Q Consensus 284 ~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~---~~v~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~ 352 (616)
.+|++++.+|.+++|++.+++... .+.+|. ..++|+|+ +.++++++.|+.|++||+.+++.+.. +.+|.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~ 241 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK 241 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence 999999999999999998876543 555554 45689999 99999999999999999999988877 56899
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe-------------------------
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT------------------------- 407 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 407 (616)
..|.+++|+ ++++|++++.|+.|++||++. ...+..+.
T Consensus 242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKT----------------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp SCEEEEEEC-STTEEEEEESSSEEEEEETTT----------------CCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred CceEEEEEC-CCCEEEEEeCCCeEEEEECCC----------------CcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 999999999 999999999999999999973 33333332
Q ss_pred cCccceeEEEEccCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEeecCCCCEEEEEEcCCCCEEEEE-eC------CC
Q psy3640 408 GHSQEISNCLFNFSNSMIASSS-LDGTAKLWDV--RTM---CCFYTLKNHEDEVLDIAFDYSGSKLATA-SS------DQ 474 (616)
Q Consensus 408 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~------dg 474 (616)
.....+..++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..|.+++|+|++ .+++. +. +.
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~ 382 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKN 382 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCC
T ss_pred cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCc
Confidence 2345688999999999999999 8999999999 555 777778877 889999999964 44444 32 45
Q ss_pred cEEEEecCC
Q psy3640 475 TANLWTVGG 483 (616)
Q Consensus 475 ~i~iwd~~~ 483 (616)
.|.+|.+..
T Consensus 383 ~i~v~~~~~ 391 (450)
T 2vdu_B 383 FAKFIEYNL 391 (450)
T ss_dssp SEEEEEEET
T ss_pred ceEEEEEEc
Confidence 578887653
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1e-29 Score=259.22 Aligned_cols=330 Identities=16% Similarity=0.140 Sum_probs=255.9
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEE
Q psy3640 200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVA 277 (616)
Q Consensus 200 ~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~ 277 (616)
..+++++.|+.|++||+.+++.+..+..|.. +.+++|+|++..+ +++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 4678889999999999999999998887754 8999999999843 66689999999999999998888665 999999
Q ss_pred EeCCCCCEEEE-EECCCeEEEEeCCCcceeEEeeece--eeEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecCCc
Q psy3640 278 FSEPYGDKILT-GSFDKTLKLWASAKEECIQTYRGHS--AEVTFSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTG 353 (616)
Q Consensus 278 ~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 353 (616)
|+ |++++++. ++.++.|++||+.+++.+..+..+. ..++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus 81 ~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp EC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred EC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 99 77887755 4567999999999999888776543 456899999987 67778999999999999988888765 4
Q ss_pred CEEEEEEcCCCCEE-EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe---
Q psy3640 354 PVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS--- 429 (616)
Q Consensus 354 ~v~~l~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--- 429 (616)
.+.+++|+|+++.+ ++++.++.|++||++ .......+. +...+.+++|+|+++.+++++
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~----------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTV----------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETT----------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECC----------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCc
Confidence 56999999999887 567788999999997 444444443 456788999999999999888
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeEEeccCCCee---------
Q psy3640 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL-ATASSDQTANLWTVGGAVELLQTFYGHSNEVS--------- 499 (616)
Q Consensus 430 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--------- 499 (616)
.++.|++||+++++.+..+..+. .+.+++|+|+++++ ++++.|+.+++||+.++.. ...+..+..+..
T Consensus 222 ~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 299 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-TATMAVGKNPYASGQFIGSIP 299 (391)
T ss_dssp SCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSSEECCSSCEEECS
T ss_pred CCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE-EEEEECCcCCCccceeeeccc
Confidence 68999999999999988887654 58899999999987 5668899999999987633 333333322211
Q ss_pred -----eEEEEEEcCC------C--CEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640 500 -----KVLDIAFDYS------G--SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 500 -----~i~~~~~s~~------~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 559 (616)
.+..+...+. . ..+...+.+...++|+..++... .+..+ ...|+|+|.+.++.
T Consensus 300 ~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 300 VQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp SCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred ccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence 1111111111 1 23555566888999999775331 22233 36789999887754
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=268.66 Aligned_cols=274 Identities=10% Similarity=0.028 Sum_probs=204.7
Q ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc
Q psy3640 193 ITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV 272 (616)
Q Consensus 193 v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~ 272 (616)
..+.+++.++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTT-------------
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccC-------------
Confidence 3455678999999999999999999999888877 466778888888 88999999999997653
Q ss_pred EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----eceeeEEEcC--CCCEEEEEeCCCcEEEEECCCCceeE
Q psy3640 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----GHSAEVTFSP--DQSTFCSCSMDHTARIFNTNSGQEMH 346 (616)
Q Consensus 273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 346 (616)
.+.+|+..+++.+..+. .....++++| +++++++++.||.|++||+++++...
T Consensus 105 ---------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~ 163 (343)
T 3lrv_A 105 ---------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI 163 (343)
T ss_dssp ---------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE
T ss_pred ---------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence 23344444444444333 2233445666 66666666666666677766666655
Q ss_pred Eee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce-EEEec-CccceeEEEEccCCC
Q psy3640 347 TLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI-HILTG-HSQEISNCLFNFSNS 423 (616)
Q Consensus 347 ~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~ 423 (616)
... .|...+.+++|+|++.+|++|+.||.|++||++ ..... ..+.. |..+|.+++|+|++.
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~----------------~~~~~~~~~~~~h~~~v~~l~fs~~g~ 227 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS----------------SPDQASSRFPVDEEAKIKEVKFADNGY 227 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS----------------CTTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC----------------CCCCCccEEeccCCCCEEEEEEeCCCC
Confidence 443 355679999999999999999999999999998 44444 56666 999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeeEEeccCCC
Q psy3640 424 MIASSSLDGTAKLWDVRTMCCFYTLKN---HEDEVL--DIAFDYSGSKLATASS-DQTANLWTVGGAVELLQTFYGHSNE 497 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~ 497 (616)
+|++++ ++.|++||+++++.+..+.. +...+. +++|+|++++|++++. |+.+++|++.........
T Consensus 228 ~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------- 299 (343)
T 3lrv_A 228 WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------- 299 (343)
T ss_dssp EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------
T ss_pred EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------
Confidence 999999 55999999999876655443 333343 6999999999999998 999999999665333222
Q ss_pred eeeEEEEEEcC---CCCEEEEEeCCCcEEEEecCC
Q psy3640 498 VSKVLDIAFDY---SGSKLATASSDQTAKLWTVGG 529 (616)
Q Consensus 498 ~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~ 529 (616)
..+..++|.+ +...+++++.|+.+.++-...
T Consensus 300 -~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 300 -DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp -EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred -cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 3466778888 888999999999888876544
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.3e-31 Score=272.76 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=220.0
Q ss_pred EEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCC-
Q psy3640 346 HTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS- 423 (616)
Q Consensus 346 ~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 423 (616)
.....|.+.|.+++|+|+ +.++++++.+|.|++||+........ ......+...+.+|...+.+++|+|++.
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------PSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------TTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------ccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 445569999999999997 67999999999999999974221110 0113567788889999999999999988
Q ss_pred EEEEEeCCCcEEEEeCCCCeE-------EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCce--eeeeEEec
Q psy3640 424 MIASSSLDGTAKLWDVRTMCC-------FYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAV--ELLQTFYG 493 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~ 493 (616)
+|++|+.||.|++||+.++.. ...+..|...|.+++|+| ++.++++++.||.|++||++... .....+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999987322 456678999999999999 67899999999999999998753 34444444
Q ss_pred cCCCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEECCCcEEEecCC
Q psy3640 494 HSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iwd~~ 571 (616)
|. ..+.+++|+|++. ++++|+.||.|++||++.....+..+..|...|++++|+|+++ +|++++.||.|++||+.
T Consensus 276 ~~---~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 276 HT---AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp CS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred CC---CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 44 3588999999987 6899999999999999886667788889999999999999985 69999999999999998
Q ss_pred c--------------CeeeeEeccCcccEEEEEEeeCCC-EEEEeeCCCcEEEcccCC
Q psy3640 572 S--------------GECIQVLKAHEDDVFSCGFNYNGD-TIITASKDNTCCIWRSMN 614 (616)
Q Consensus 572 ~--------------~~~~~~~~~h~~~V~~l~~s~~~~-~l~t~s~Dg~i~vW~~~~ 614 (616)
. .+.+..+.+|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 7 367788889999999999999999 999999999999999864
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-30 Score=268.59 Aligned_cols=282 Identities=22% Similarity=0.353 Sum_probs=235.5
Q ss_pred CcceEEEEECCCC----------CEEEEEEC----CCcEEEEECC--------------------------CCcE-EEEE
Q psy3640 187 LLPLTNITFDKFG----------TRCLTGSY----DRTCKLWDIK--------------------------SGHE-ICTY 225 (616)
Q Consensus 187 ~~~i~~v~~s~~g----------~~lasgs~----dg~i~iwd~~--------------------------~~~~-~~~~ 225 (616)
.-|..++.|.|+. .+++.|+. ...|.+.++. +++. ....
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 3478999999975 46888875 3457777542 1112 2455
Q ss_pred eccCCcEEEEEEcCC-CC-EEEEECCCcEEEEeCCC----------CceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECC
Q psy3640 226 RGHQNVVYAVAFSEP-YG-CLTGSYDRTCKLWDIKS----------GHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFD 292 (616)
Q Consensus 226 ~~h~~~I~~l~fs~~-~~-lls~s~d~~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~d 292 (616)
.+|.+.|++++|+|+ +. +++++.+|.|++||+.+ .+.+..+.+|...|++++|+ +++. +|++|+.|
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~d 203 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN-PNLNGYLLSASDD 203 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC-TTSTTEEEEECTT
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC-CCCCCeEEEEeCC
Confidence 689999999999998 44 45888999999999987 67888999999999999999 5555 99999999
Q ss_pred CeEEEEeCCCcce-------eEEeeece---eeEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEeecCCcCEEEE
Q psy3640 293 KTLKLWASAKEEC-------IQTYRGHS---AEVTFSP-DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISL 358 (616)
Q Consensus 293 g~i~iwd~~~~~~-------~~~~~~~~---~~v~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l 358 (616)
|.|++|++.++.. ...+.+|. ..++|+| ++..+++++.||.|++||++++ +.+..+..|...|.++
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i 283 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL 283 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence 9999999987422 34455554 4568999 7889999999999999999987 5777888999999999
Q ss_pred EEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEE
Q psy3640 359 QFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKL 436 (616)
Q Consensus 359 ~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i 436 (616)
+|+|++. ++++|+.||.|++||++. ...++..+..|...|.+++|+|++. ++++++.||.|++
T Consensus 284 ~~~p~~~~~l~tg~~dg~v~vwd~~~---------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i 348 (430)
T 2xyi_A 284 SFNPYSEFILATGSADKTVALWDLRN---------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348 (430)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTC---------------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred EeCCCCCCEEEEEeCCCeEEEEeCCC---------------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence 9999887 789999999999999973 2456788889999999999999985 7999999999999
Q ss_pred EeCCC--------------CeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCc
Q psy3640 437 WDVRT--------------MCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGA 484 (616)
Q Consensus 437 wd~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~ 484 (616)
||+.. .+.+..+.+|...|.+++|+|+++ ++++++.||.|++|++...
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99987 366777888999999999999999 8999999999999999753
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.5e-29 Score=256.33 Aligned_cols=304 Identities=18% Similarity=0.184 Sum_probs=238.4
Q ss_pred EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEE-EEEECCCeEEEEeCCCcceeEEeeece--eeEEEc
Q psy3640 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHS--AEVTFS 319 (616)
Q Consensus 243 lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~ 319 (616)
+++++.|+.|++||+.+++.+..+..|. .+.+++|+ ++++.+ ++++.|+.|++||+.+++.+..+..+. ..++|+
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s 82 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS 82 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence 4588899999999999999999998775 48999999 778776 677789999999999999888876544 456899
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEecccccCCcccccccccc
Q psy3640 320 PDQSTFCSCS-MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYR 397 (616)
Q Consensus 320 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 397 (616)
|+++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+.
T Consensus 83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~--------------- 146 (391)
T 1l0q_A 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV--------------- 146 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT---------------
T ss_pred CCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence 9999886555 569999999999998888775 4578999999999977 677789999999987
Q ss_pred cCCcceEEEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe---CC
Q psy3640 398 ASHKPIHILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS---SD 473 (616)
Q Consensus 398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~d 473 (616)
.......+..+ ..+..++|+|+++.+ ++++.++.|++||+++++....+. +...+.+++|+|+++++++++ .+
T Consensus 147 -~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 147 -TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYF 223 (391)
T ss_dssp -TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred -CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCC
Confidence 55555555554 456899999999887 567788999999999998877765 455778888888888887776 56
Q ss_pred CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg 553 (616)
+.|++||+.+. +.+..+..| ..+.+++|+|++
T Consensus 224 ~~v~~~d~~~~-----------------------------------------------~~~~~~~~~-~~~~~~~~s~dg 255 (391)
T 1l0q_A 224 NTVSMIDTGTN-----------------------------------------------KITARIPVG-PDPAGIAVTPDG 255 (391)
T ss_dssp CEEEEEETTTT-----------------------------------------------EEEEEEECC-SSEEEEEECTTS
T ss_pred CcEEEEECCCC-----------------------------------------------eEEEEEecC-CCccEEEEccCC
Confidence 77777776543 223333334 357889999999
Q ss_pred CEE-EEEECCCcEEEecCCcCeeeeEeccCcccEE---------------EEEEeeCC----------CEEEEeeCCCcE
Q psy3640 554 KLV-LSGSQDTTCRLWSTESGECIQVLKAHEDDVF---------------SCGFNYNG----------DTIITASKDNTC 607 (616)
Q Consensus 554 ~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~---------------~l~~s~~~----------~~l~t~s~Dg~i 607 (616)
++| ++++.|+.|++||+.+++.+..+..|..+.. ...|+.+. -.+...+.|...
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 977 5667899999999999999988877765431 11233332 346667788999
Q ss_pred EEcccCCC
Q psy3640 608 CIWRSMNR 615 (616)
Q Consensus 608 ~vW~~~~~ 615 (616)
++|++.+.
T Consensus 336 ~~W~~~~g 343 (391)
T 1l0q_A 336 WKWDFGDG 343 (391)
T ss_dssp EEEECSSS
T ss_pred EEEECCCC
Confidence 99998653
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.5e-29 Score=261.79 Aligned_cols=333 Identities=12% Similarity=0.125 Sum_probs=259.0
Q ss_pred CCcceEEEE---ECCCCCEEEEEE--------------CCCcEEEEEC--CCC--cEEEEEeccCCcEEEEEEcCCCCEE
Q psy3640 186 HLLPLTNIT---FDKFGTRCLTGS--------------YDRTCKLWDI--KSG--HEICTYRGHQNVVYAVAFSEPYGCL 244 (616)
Q Consensus 186 h~~~i~~v~---~s~~g~~lasgs--------------~dg~i~iwd~--~~~--~~~~~~~~h~~~I~~l~fs~~~~ll 244 (616)
....+..++ |+|+++.++..+ .++.+.||.+ .++ +.+..+..+. .+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence 445667777 888877666543 2332345544 335 5555666554 45599999976665
Q ss_pred -EEECCCcEEEEeCCCCceEE-----EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece---ee
Q psy3640 245 -TGSYDRTCKLWDIKSGHEIC-----TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AE 315 (616)
Q Consensus 245 -s~s~d~~I~iwd~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~ 315 (616)
+++.++.|++||+.+++... .+.+|...|.+++|+ +++..+++++.|+.|++||+.+++.+..+..+. ..
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~ 216 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI 216 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence 56678899999999999887 445789999999997 889999999999999999999999888887554 45
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE--------CCCcEEEEecccccC
Q psy3640 316 VTFSPDQSTFCSCS-MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS--------FDSSIVVWDIQYQFG 386 (616)
Q Consensus 316 v~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~--------~dg~i~iwd~~~~~~ 386 (616)
++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+.
T Consensus 217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~---- 291 (433)
T 3bws_A 217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD---- 291 (433)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT----
T ss_pred EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC----
Confidence 68999999886554 7899999999999988887754 4589999999999999988 58899999996
Q ss_pred CcccccccccccCCcceEEEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC
Q psy3640 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465 (616)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~ 465 (616)
....... ..+...+..++|+|+++.+ ++++.++.|++||+.+++....+. +...+.+++|+|+++
T Consensus 292 ------------~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~ 357 (433)
T 3bws_A 292 ------------KEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK 357 (433)
T ss_dssp ------------TTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred ------------CCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence 3333333 3455678899999999755 666889999999999998888776 677899999999999
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEE
Q psy3640 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVS 545 (616)
Q Consensus 466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 545 (616)
++++++.+..-. ...++++|+.||.|++||..+. +....+.. ...+.
T Consensus 358 ~l~~~~~~~~~~-------------------------------~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~ 404 (433)
T 3bws_A 358 YLYVSCRGPNHP-------------------------------TEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPT 404 (433)
T ss_dssp EEEEEECCCCCT-------------------------------TTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEE
T ss_pred EEEEEecCCCcc-------------------------------ccccccccccceEEEEEECCCC-cEEEEecC-CCCCc
Confidence 998887642100 2334566778888899988774 45555554 45789
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEecCCc
Q psy3640 546 KVSFHPTGKLVLSGSQ-DTTCRLWSTES 572 (616)
Q Consensus 546 ~l~~spdg~~l~s~s~-dg~i~iwd~~~ 572 (616)
+++|+|+|++|++++. |+.|++|+++.
T Consensus 405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 405 GLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999999998875 99999999763
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-31 Score=262.99 Aligned_cols=273 Identities=13% Similarity=0.123 Sum_probs=217.4
Q ss_pred CCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEE
Q psy3640 239 EPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT 317 (616)
Q Consensus 239 ~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~ 317 (616)
+++. +++|+.||+|++||+.+++.+..+. ...|.++.|+ |. +++++.|++|++|+...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~-~~---~~s~s~D~~i~~w~~~~--------------- 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEH-PA---IISRGPCNRLLLLYPGN--------------- 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCC-CS---EEEECSTTEEEEEETTT---------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeC-Cc---eEEecCCCeEEEEEccC---------------
Confidence 3444 5699999999999999999888876 4567778887 43 99999999999998653
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394 (616)
Q Consensus 318 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 394 (616)
.+.+||..+++.+..+. .|..+|.+++|+| +++++++++.||.|++||++
T Consensus 105 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~------------ 157 (343)
T 3lrv_A 105 ---------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE------------ 157 (343)
T ss_dssp ---------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS------------
T ss_pred ---------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC------------
Confidence 56789999888666665 6778999999999 99999999999999999997
Q ss_pred ccccCCcceEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE-EEeec-CCCCEEEEEEcCCCCEEEEEe
Q psy3640 395 TYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF-YTLKN-HEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 395 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~~~~ 471 (616)
........ ..+...+.+++|+|++.++++|+.||.|++||+++++.. ..+.. |..+|.+++|+|++.+|++++
T Consensus 158 ----~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~ 233 (343)
T 3lrv_A 158 ----DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC 233 (343)
T ss_dssp ----SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred ----CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence 44554444 345567999999999999999999999999999999877 78887 999999999999999999999
Q ss_pred CCCcEEEEecCCceeee--eEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640 472 SDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVS 548 (616)
Q Consensus 472 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~ 548 (616)
++.|++||++...... ..+..+...... .+++|+|++++|++++. |+.+++|++......... .++..++
T Consensus 234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~ 306 (343)
T 3lrv_A 234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALC 306 (343)
T ss_dssp -SSBEEEEETTSSTTCBSSCCCBC-----CC-EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECC
T ss_pred -CCeEEEEEcCCCCcceeecccccccccccc-eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEe
Confidence 5599999998764321 111112222222 46999999999999998 999999999654332222 5678889
Q ss_pred Eec---CCCEEEEEECCCcEEEecC
Q psy3640 549 FHP---TGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 549 ~sp---dg~~l~s~s~dg~i~iwd~ 570 (616)
|+| +++.+++++.||.+.++-.
T Consensus 307 ~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 307 LQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp C----CCCCEEEEEEETTEEEEEEE
T ss_pred cCccccccceeEEEecCCceEEEEe
Confidence 998 8899999999999988753
No 125
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=293.75 Aligned_cols=252 Identities=22% Similarity=0.336 Sum_probs=217.0
Q ss_pred EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CC
Q psy3640 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NS 423 (616)
Q Consensus 346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 423 (616)
..+.+|.+.|.+++|+|+++++++|+.||.|++||+... .......+.+|...|.+++|+++ ++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------~~~~~~~l~~h~~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGT 68 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCTTSCS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------CCccceeccCCcCceEEEEecCCCCCC
Confidence 456789999999999999999999999999999998621 34566778899999999999988 99
Q ss_pred EEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceee-eeEEeccCCCe
Q psy3640 424 MIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVEL-LQTFYGHSNEV 498 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~ 498 (616)
++++|+.||.|++||+.++. ....+..|...|.+++|+|+ +..+++++.||.|++||+...... ......+.
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~--- 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA--- 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS---
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC---
Confidence 99999999999999999986 77788889999999999999 999999999999999999876322 23333443
Q ss_pred eeEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---EEeEEeeccccCEEEEEEecC---CCEEEEE
Q psy3640 499 SKVLDIAFDY-------------SGSKLATASSDQTAKLWTVGGAV---ELLQTFYGHSNEVSKVSFHPT---GKLVLSG 559 (616)
Q Consensus 499 ~~i~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd---g~~l~s~ 559 (616)
..+.+++|+| ++.++++|+.||.|++||+.+.. .....+.+|..+|++++|+|+ +++|++|
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence 4588899999 58999999999999999997642 566778899999999999999 8999999
Q ss_pred ECCCcEEEecCCcCe-----eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 560 SQDTTCRLWSTESGE-----CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 560 s~dg~i~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
+.||.|++||+.+++ .+.....|.+.|++++|+|++++|++++.||.|++|++.+
T Consensus 226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 999999999999874 3444456889999999999999999999999999999874
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=5.2e-32 Score=275.97 Aligned_cols=251 Identities=13% Similarity=0.117 Sum_probs=163.7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcee-----EEeecCCcCEEEEEEcC--------CCCEEEEEECCCcEEEEeccccc
Q psy3640 319 SPDQSTFCSCSMDHTARIFNTNSGQEM-----HTLKAHTGPVISLQFSS--------DRNMLITGSFDSSIVVWDIQYQF 385 (616)
Q Consensus 319 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~--------~~~~l~~g~~dg~i~iwd~~~~~ 385 (616)
.+++.++++++.|++|++||.++++.. ..+.+|.+.|.+++|+| ++++|++++.|++|++||++
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~--- 174 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT--- 174 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE---
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC---
Confidence 344455566666666666666555432 23568999999999998 78999999999999999997
Q ss_pred CCcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCE----EEEEE
Q psy3640 386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV----LDIAF 460 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~l~~ 460 (616)
...+......|...+.+++|+|++. +|++++.||.|++||+++++.......+.... .....
T Consensus 175 -------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 175 -------------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp -------------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred -------------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 6677788888999999999999874 89999999999999999887655443322211 11111
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc-CCCCEEEEEeCCCcEEEEecCCceEEeEEeec
Q psy3640 461 DYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YSGSKLATASSDQTAKLWTVGGAVELLQTFYG 539 (616)
Q Consensus 461 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 539 (616)
.+...... ..++. ..+.++.|+ ++++.+++++.|+.+++||+... .....+..
T Consensus 242 ~~~~~~~~----------------------~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~ 295 (393)
T 4gq1_A 242 LPLVNTCH----------------------SSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISD 295 (393)
T ss_dssp GGGC----------------------------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred ccceeeee----------------------ccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEee
Confidence 11110000 01111 123345554 67777777777888888877653 33333334
Q ss_pred cccCEEEEE------------------Eec--CCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEE
Q psy3640 540 HSNEVSKVS------------------FHP--TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTII 599 (616)
Q Consensus 540 h~~~v~~l~------------------~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 599 (616)
|...+..+. |+| ++.++++|+.||.|++||+.+++++..+.+|..+|.+++|+|||++||
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA 375 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLA 375 (393)
T ss_dssp --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 443333333 333 334677888999999999999999998899999999999999999999
Q ss_pred EeeCCCcEEEccc
Q psy3640 600 TASKDNTCCIWRS 612 (616)
Q Consensus 600 t~s~Dg~i~vW~~ 612 (616)
+++.|| +.+|++
T Consensus 376 ~as~~G-v~lvrL 387 (393)
T 4gq1_A 376 IATEGS-VLLTRL 387 (393)
T ss_dssp EEESSE-EEEEEE
T ss_pred EEeCCC-eEEEEE
Confidence 999877 555654
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=2e-29 Score=241.19 Aligned_cols=294 Identities=11% Similarity=0.097 Sum_probs=206.6
Q ss_pred hhhheecccCCc----ceEEEEECCCCC---EEEEEECCCcEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCC-EEE
Q psy3640 177 YEKFKMLKSHLL----PLTNITFDKFGT---RCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYG-CLT 245 (616)
Q Consensus 177 ~~~~~~l~~h~~----~i~~v~~s~~g~---~lasgs~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~fs~~~~-lls 245 (616)
.+++..|+.-.+ .+.++-|-..|- .+++++. ..|++|+..++ +.++++.+|+.+|..+.|.||.. ++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 344455554333 356666655443 5566665 48999999999 89999999999999999999865 331
Q ss_pred EECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCC----CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCC
Q psy3640 246 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY----GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPD 321 (616)
Q Consensus 246 ~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 321 (616)
. .--+-+...|.+++|+ |+ +..+++++.+ +++|++. +
T Consensus 104 ~-----------------~~~~~~~~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~-------------------~ 144 (356)
T 2w18_A 104 V-----------------ALGNLEIREIRALFCS-SDDESEKQVLLKSGNI--KAVLGLT-------------------K 144 (356)
T ss_dssp E-----------------EECSSSEEEEEEECC-------CCEEEEEEEEE--EEEEEET-------------------T
T ss_pred e-----------------eeccccccceEEEEEC-CCccccccEEEeCCCe--EEEEecC-------------------C
Confidence 1 1112355789999999 78 8889998844 7788754 3
Q ss_pred CCEEEEEe--CCCcEEEEEC-CCCceeEEeecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 322 QSTFCSCS--MDHTARIFNT-NSGQEMHTLKAHTGPVISLQFSS---DRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 322 ~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
++.+.+++ .|+.|++|++ .+++.+..+..|...+..++|++ ++..|++++.|++|++||+.
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~------------- 211 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK------------- 211 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-------------
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-------------
Confidence 33444433 5899999999 55888889999999999999999 77999999999999999998
Q ss_pred cccCCcceEEEecCcc---ceeEEEEccCCCEE------------EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640 396 YRASHKPIHILTGHSQ---EISNCLFNFSNSMI------------ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 460 (616)
+++.+..+.+|.. .+.+++|+|++.++ ++|+.|+++++||..+++.+..+. +++
T Consensus 212 ---TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~--------~~~ 280 (356)
T 2w18_A 212 ---TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML--------YCL 280 (356)
T ss_dssp ---TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE--------ECC
T ss_pred ---CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE--------eec
Confidence 7788888876543 56677899999876 567788999999999988775331 111
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc
Q psy3640 461 DYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH 540 (616)
Q Consensus 461 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h 540 (616)
|+|.. +. + +..+.++.++++++.|++|++||+.++ +++.++.+|
T Consensus 281 -p~Gh~-------~~-------------------------~--lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH 324 (356)
T 2w18_A 281 -PPGQA-------GR-------------------------F--LEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPV 324 (356)
T ss_dssp -CTTCC-------CC-------------------------E--EEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC
T ss_pred -cCCCc-------ce-------------------------e--EccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCC
Confidence 22210 00 0 011112556667777777777777663 667778888
Q ss_pred ccCEE-EEEEecCCCEEEEEECCCcEEEecC
Q psy3640 541 SNEVS-KVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 541 ~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
...+. .++|||||++|++|+.|++|+|||+
T Consensus 325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 87655 6899999999999999999999985
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1.3e-28 Score=259.93 Aligned_cols=330 Identities=13% Similarity=0.078 Sum_probs=258.1
Q ss_pred EECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeC--CCCceEEEeeCCC
Q psy3640 194 TFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDI--KSGHEICTYRGHQ 270 (616)
Q Consensus 194 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~--~~~~~~~~~~~h~ 270 (616)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+++++ +++.|++|++||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4899999999999999999999999999999984433 8899999999965 8899999999999 8999888888 45
Q ss_pred CcEEEEEEeCC----CCCEEEEEEC-CCeEEEEeCCCcceeEEeeec--------------eeeEEEcCCCCEE-EEEeC
Q psy3640 271 NVVYAVAFSEP----YGDKILTGSF-DKTLKLWASAKEECIQTYRGH--------------SAEVTFSPDQSTF-CSCSM 330 (616)
Q Consensus 271 ~~V~~l~~~~~----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~l-~~~~~ 330 (616)
..+..++|+ | +++++++++. +++|.+||..+++++..+..+ ...+.++|++..+ ++...
T Consensus 222 ~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 678999999 7 8999988884 899999999999998887642 2456899977654 56667
Q ss_pred CCcEEEEECCCCceeE--EeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 331 DHTARIFNTNSGQEMH--TLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
++.|.+||..+.+.+. .+. +...+..++|+|+|+++++++ .+++|.+||.. +.+.+..+.
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~----------------tg~l~~~i~ 363 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK----------------DRRLSALVD 363 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT----------------TTEEEEEEE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECC----------------CCeEEEeec
Confidence 8999999998876544 443 566678899999999877665 58899999997 555555554
Q ss_pred c----CccceeEEEEccC-CCEEEEEe-CCCcEEEEeCCC-------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeC--
Q psy3640 408 G----HSQEISNCLFNFS-NSMIASSS-LDGTAKLWDVRT-------MCCFYTLKNHEDEVLDIAFDYSGSKLATASS-- 472 (616)
Q Consensus 408 ~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-- 472 (616)
. |......+ ++|+ +..++++. .|++|.+||+.+ +++++++..+...+..++++|++++|++++.
T Consensus 364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC
T ss_pred cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC
Confidence 3 43333333 4676 55666665 579999999998 8999999999888899999999999999872
Q ss_pred -----CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640 473 -----DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV 547 (616)
Q Consensus 473 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 547 (616)
+++|.+||+.+.......+. +. ...-+..+...+..+
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~----------------------------------v~----~~~~~~~~~~~~~~~ 484 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLP----------------------------------IA----EWADLGEGAKRVVQP 484 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEEC----------------------------------HH----HHHCCCSSCCEEEEE
T ss_pred CCcccCceEEEEECCCCCCCeEEee----------------------------------ch----hhcccCCCCCceEec
Confidence 66899998876532111100 00 000023456778999
Q ss_pred EEecCCCEEEEEE-----CCCcEEEecCCcCeeeeEeccC
Q psy3640 548 SFHPTGKLVLSGS-----QDTTCRLWSTESGECIQVLKAH 582 (616)
Q Consensus 548 ~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h 582 (616)
+|+|+|+.|+++. .|+.|.|||.++++++.+++.+
T Consensus 485 ~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 485 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp EECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence 9999999988763 4799999999999999998854
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=9e-30 Score=259.39 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=188.7
Q ss_pred ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeccCCcEEEEEEcC--------CCCE-EEEE
Q psy3640 182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC-----TYRGHQNVVYAVAFSE--------PYGC-LTGS 247 (616)
Q Consensus 182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~-----~~~~h~~~I~~l~fs~--------~~~l-ls~s 247 (616)
....|...+....+++++.+||+|+.|++|+|||+.+++... .+.+|.+.|.+++|+| |+++ ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 334566666777778888999999999999999999886543 3568999999999997 6664 5999
Q ss_pred CCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEE
Q psy3640 248 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCS 327 (616)
Q Consensus 248 ~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~ 327 (616)
.|++|+|||+.++.++..+.+|...|.+++|+|.+..+|++++.|++|++||+.+++.......+.... ......
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~-----~~~~~s 238 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK-----NPWLLT 238 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS-----CCCSEE
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc-----cceEEe
Confidence 999999999999998888888999999999995555689999999999999999887655443221110 000011
Q ss_pred EeCCCcEEEEECCCCceeEEeecCCcCEEEEEEc-CCCCEEEEEECCCcEEEEecccccCCccccccc---ccccCCcce
Q psy3640 328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES---TYRASHKPI 403 (616)
Q Consensus 328 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~ 403 (616)
++...........+|...+.++.|. |+++.+++++.|+++++||+............. .........
T Consensus 239 ---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~ 309 (393)
T 4gq1_A 239 ---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV 309 (393)
T ss_dssp ---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred ---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence 1111111122334688889999986 799999999999999999987432211110000 000011112
Q ss_pred EEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 404 HILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
.....+...+..+.+.+. +.++++|+.||.|++||+.++.....+..|..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 222223333333333333 34667788899999999999988888888999999999999999999998775 6666553
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=9.5e-28 Score=253.36 Aligned_cols=320 Identities=11% Similarity=0.072 Sum_probs=248.4
Q ss_pred EcCCCCEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeC--CCcceeEEeeec-
Q psy3640 237 FSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS--AKEECIQTYRGH- 312 (616)
Q Consensus 237 fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~- 312 (616)
|+|++.++ +++.|++|.+||..+++.+.++..+.. +..++|+ |+++++++++.|++|.+||+ .+++.+.++...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 66777744 778899999999999999999984433 8899999 89999999999999999999 888888877643
Q ss_pred -eeeEEEcC----CCCEEEEEeC-CCcEEEEECCCCceeEEeecC----------C-cCEEEEEEcCCCCE-EEEEECCC
Q psy3640 313 -SAEVTFSP----DQSTFCSCSM-DHTARIFNTNSGQEMHTLKAH----------T-GPVISLQFSSDRNM-LITGSFDS 374 (616)
Q Consensus 313 -~~~v~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~-~~v~~l~~~~~~~~-l~~g~~dg 374 (616)
...++|+| +++++++++. +++|.+||..+++.+..+..+ . ..+.++.++|++.. +++...++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g 302 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG 302 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence 34578999 9999998884 899999999999998887642 2 37899999997665 55666789
Q ss_pred cEEEEecccccCCcccccccccccCCcceE-EEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeec--
Q psy3640 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIH-ILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKN-- 450 (616)
Q Consensus 375 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-- 450 (616)
.|.+||... ...+. ....+...+..+.|+|+++++++++ .+++|.+||+.+++++..+..
T Consensus 303 ~i~vvd~~~----------------~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 303 KVLLVNYKD----------------IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp EEEEEECTT----------------SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred eEEEEEecC----------------CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 999999873 22111 1223556678899999999877655 578999999999999888774
Q ss_pred --CCCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640 451 --HEDEVLDIAFDYS-GSKLATAS-SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526 (616)
Q Consensus 451 --~~~~v~~l~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 526 (616)
|.+....+ ++|+ +..++++. .|++|.+|+..+.. +..
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~------------------------------ 407 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQ------------------------------ 407 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT--------CTT------------------------------
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC--------Cch------------------------------
Confidence 44333333 4566 55555554 56788888876520 000
Q ss_pred cCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-------CCCcEEEecCCcCeee-eEe--------ccCcccEEEEE
Q psy3640 527 VGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-------QDTTCRLWSTESGECI-QVL--------KAHEDDVFSCG 590 (616)
Q Consensus 527 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~V~~l~ 590 (616)
...+.++.+..|.+.+..++++|+|++|++++ .+++|.+||+.+++.. ..+ ..+...+..+.
T Consensus 408 --~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 408 --YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp --TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred --hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 01356777888888889999999999999987 2679999999999877 444 35667899999
Q ss_pred EeeCCCEEEEee-----CCCcEEEcccCCC
Q psy3640 591 FNYNGDTIITAS-----KDNTCCIWRSMNR 615 (616)
Q Consensus 591 ~s~~~~~l~t~s-----~Dg~i~vW~~~~~ 615 (616)
|+|+|+.|+++. .|+.|.|||.++.
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 999999988762 4799999999875
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=6.4e-27 Score=259.26 Aligned_cols=319 Identities=14% Similarity=0.072 Sum_probs=245.8
Q ss_pred CcceEEEEECCCCCEEEEEEC-CC-----cEEEEECCCCcEEEEEeccCC------------------------cEEEEE
Q psy3640 187 LLPLTNITFDKFGTRCLTGSY-DR-----TCKLWDIKSGHEICTYRGHQN------------------------VVYAVA 236 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~I~~l~ 236 (616)
...+.+++|||||++|++++. |+ +|.+||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 567999999999999999998 88 899999999988877765543 388999
Q ss_pred EcCCCCEEEEECCCcEEEEeCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--
Q psy3640 237 FSEPYGCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-- 312 (616)
Q Consensus 237 fs~~~~lls~s~d~~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 312 (616)
|+||++.++.+.++.|++||+.++. ....+..|...+..++|+ |++++|++++. +.|++||+.+++.......+
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCC-CCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999997755445999999999883 445677788899999999 89999999885 69999999988766544332
Q ss_pred -----------------eeeEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q psy3640 313 -----------------SAEVTFSPDQSTFCSCSMDH---------------------------------TARIFNTNS- 341 (616)
Q Consensus 313 -----------------~~~v~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~- 341 (616)
...++|+||++.|++++.|+ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 25579999999999987765 788999988
Q ss_pred CceeEEee--cCCcCEEEEEEcCCCCEEEEEEC-----CCcEEEEecccccCCcccccccccccCCcceEEEecCcc---
Q psy3640 342 GQEMHTLK--AHTGPVISLQFSSDRNMLITGSF-----DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ--- 411 (616)
Q Consensus 342 ~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 411 (616)
++...... .|...+..++| |||+.|++++. +..|++||+. .......+..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~----------------~g~~~~~~~~~~~~~~ 336 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA----------------SNQQRVLAHETSPTWV 336 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT----------------TCCEEEEEEEECSSCC
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC----------------CCceEEEEEcCCCCcC
Confidence 77655443 37788999999 99999997764 5679999987 4444444444332
Q ss_pred -ceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEEE-EEcCCCCEEEEEe-CCC--cEEEEecCCce
Q psy3640 412 -EISNCLFNFSNSMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLDI-AFDYSGSKLATAS-SDQ--TANLWTVGGAV 485 (616)
Q Consensus 412 -~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~~~~~~~l~~~~-~dg--~i~iwd~~~~~ 485 (616)
.+..++|+|+++++++++.+|.+++|.+. .+. ...+..+...+..+ .|+|+++.++..+ .++ .+++|++....
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g 415 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG 415 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence 45688999999999999999987777654 344 67777788888887 5999999876544 444 89999886422
Q ss_pred eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCC
Q psy3640 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGG 529 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 529 (616)
.....+.. ...+..++|+|++++++....+ ..+.+++..+
T Consensus 416 ~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 416 GQPQRLSK----APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CCCEECCC----SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCeeeccc----CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 22233322 2235688999999998877554 4688888755
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=3.6e-27 Score=241.55 Aligned_cols=276 Identities=15% Similarity=0.126 Sum_probs=214.6
Q ss_pred CCcceEEEEECCCCC-EEEEEE----CCC----cEEEEEC--CCCcEE--EEEeccCCcEEEEEEcC-------------
Q psy3640 186 HLLPLTNITFDKFGT-RCLTGS----YDR----TCKLWDI--KSGHEI--CTYRGHQNVVYAVAFSE------------- 239 (616)
Q Consensus 186 h~~~i~~v~~s~~g~-~lasgs----~dg----~i~iwd~--~~~~~~--~~~~~h~~~I~~l~fs~------------- 239 (616)
+...+...+|++.|. ++++|+ .+| +|++||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 345677788888875 555776 467 8999999 999887 45889988888887764
Q ss_pred --CCCEEEEECC------CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCC---eEEEEeCCCcceeEE
Q psy3640 240 --PYGCLTGSYD------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK---TLKLWASAKEECIQT 308 (616)
Q Consensus 240 --~~~lls~s~d------~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~ 308 (616)
+.+++.++.+ ++|++||+.. .....+.+|...+.+++|+ |+++.|++++.++ .|++||+.+++....
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 4456655543 7999999974 4557778899999999999 8999999999885 999999999877543
Q ss_pred e--eeceeeEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CC--cEEEEe
Q psy3640 309 Y--RGHSAEVTFSPDQSTFC-SCSMDHT--ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-DS--SIVVWD 380 (616)
Q Consensus 309 ~--~~~~~~v~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg--~i~iwd 380 (616)
. .+....++|+|+++.|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|+.|++++. ++ .|.+||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 2 22345678999999888 5665554 99999998775 567778889999999999999998886 45 566777
Q ss_pred cccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCEEE
Q psy3640 381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD---GTAKLWDVRTMCCFYTLKNHEDEVLD 457 (616)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~ 457 (616)
+. ... ...+..+...+..++|+|++++|++++.+ ..|++||+.+++.. .+..+. .+.+
T Consensus 298 ~~----------------~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~ 358 (415)
T 2hqs_A 298 IN----------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDET 358 (415)
T ss_dssp TT----------------SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEE
T ss_pred CC----------------CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCC
Confidence 75 222 33445566778899999999999988864 58999999988764 454444 7889
Q ss_pred EEEcCCCCEEEEEeCCC---cEEEEecCC
Q psy3640 458 IAFDYSGSKLATASSDQ---TANLWTVGG 483 (616)
Q Consensus 458 l~~~~~~~~l~~~~~dg---~i~iwd~~~ 483 (616)
++|+|+|+.|++++.++ .|++||+.+
T Consensus 359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp EEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 99999999888887766 577777654
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=2.3e-26 Score=235.61 Aligned_cols=297 Identities=16% Similarity=0.148 Sum_probs=230.8
Q ss_pred CcEEEEEEeCCCCCEEEEEE----CCC----eEEEEeC--CCccee--EEeeeceeeE---EEcC--------------C
Q psy3640 271 NVVYAVAFSEPYGDKILTGS----FDK----TLKLWAS--AKEECI--QTYRGHSAEV---TFSP--------------D 321 (616)
Q Consensus 271 ~~V~~l~~~~~~~~~l~s~s----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v---~~~~--------------~ 321 (616)
..+....|.+...+.+++|+ .+| .+++||+ .+++.+ ..+.++...+ ++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 35666777755566777886 467 8999999 888877 4466665443 2222 2
Q ss_pred CCEEEEEeCC------CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC---cEEEEecccccCCccccc
Q psy3640 322 QSTFCSCSMD------HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS---SIVVWDIQYQFGTRNAYA 392 (616)
Q Consensus 322 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~ 392 (616)
+..++.++.+ +.|++||+. +.....+..|...+.+++|+|+|+.|++++.++ .|++||+.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~---------- 211 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA---------- 211 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC----------
Confidence 6666666654 799999997 455677788999999999999999999999885 99999996
Q ss_pred ccccccCCcceEEEecCccceeEEEEccCCCEEE-EEeCCCc--EEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEE
Q psy3640 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA-SSSLDGT--AKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469 (616)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 469 (616)
.... ..+..+...+.+++|+|+++.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|+|+.|++
T Consensus 212 ------tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~ 283 (415)
T 2hqs_A 212 ------NGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAF 283 (415)
T ss_dssp ------TCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEE
T ss_pred ------CCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEE
Confidence 3333 35667788899999999999887 5665554 99999998875 566778889999999999999998
Q ss_pred EeC-CC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEecCCceEEeEEeeccccC
Q psy3640 470 ASS-DQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD---QTAKLWTVGGAVELLQTFYGHSNE 543 (616)
Q Consensus 470 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~ 543 (616)
++. ++ .|.+||+.++.. ..+..+ ...+..++|+|+|++|++++.+ ..|.+||+.++.. ..+..|. .
T Consensus 284 ~s~~~g~~~i~~~d~~~~~~--~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~ 355 (415)
T 2hqs_A 284 TSDQAGRPQVYKVNINGGAP--QRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-L 355 (415)
T ss_dssp EECTTSSCEEEEEETTSSCC--EECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-S
T ss_pred EECCCCCcEEEEEECCCCCE--EEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-C
Confidence 876 45 577778876532 222222 2357789999999999988864 5899999987533 3455554 8
Q ss_pred EEEEEEecCCCEEEEEECCC---cEEEecCCcCeeeeEeccCcccEEEEEEeeCC
Q psy3640 544 VSKVSFHPTGKLVLSGSQDT---TCRLWSTESGECIQVLKAHEDDVFSCGFNYNG 595 (616)
Q Consensus 544 v~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~ 595 (616)
+.+++|+|+|++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|..
T Consensus 356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 99999999999999988877 79999986 66678899999999999999864
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.2e-26 Score=256.99 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=244.1
Q ss_pred CCcEEEEEEeCCCCCEEEEEEC-CC-----eEEEEeCCCcceeEEeeec---------------------------eeeE
Q psy3640 270 QNVVYAVAFSEPYGDKILTGSF-DK-----TLKLWASAKEECIQTYRGH---------------------------SAEV 316 (616)
Q Consensus 270 ~~~V~~l~~~~~~~~~l~s~s~-dg-----~i~iwd~~~~~~~~~~~~~---------------------------~~~v 316 (616)
...+.+++|+ |+|++|++++. |+ .|++||+.+++....+..+ ...+
T Consensus 36 ~~~~~~~~~S-pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVA-PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEEC-TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEe-cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4578999999 89999999998 88 9999999999877666543 3456
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640 317 TFSPDQSTFCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394 (616)
Q Consensus 317 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 394 (616)
+|+||+++|++++. +.|.+||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+..
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~----------- 181 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS----------- 181 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-----------
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-----------
Confidence 89999999999886 999999999873 4455667888899999999999999988 56999999863
Q ss_pred ccccCCcceEEEecCcc----------------ceeEEEEccCCCEEEEEeCCC--------------------------
Q psy3640 395 TYRASHKPIHILTGHSQ----------------EISNCLFNFSNSMIASSSLDG-------------------------- 432 (616)
Q Consensus 395 ~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg-------------------------- 432 (616)
.........+.. .+..++|+|+|+.|++++.|+
T Consensus 182 -----g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 182 -----GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp -----TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred -----CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 222221111211 247899999999999988765
Q ss_pred -------cEEEEeCCC-CeEEEEee--cCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEecCCceeeeeEEeccCC-
Q psy3640 433 -------TAKLWDVRT-MCCFYTLK--NHEDEVLDIAFDYSGSKLATASS-----DQTANLWTVGGAVELLQTFYGHSN- 496 (616)
Q Consensus 433 -------~i~iwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~- 496 (616)
.|++||+.+ ++...... .+...+.+++| |+|+.|++++. +..|.+||+.++... .....+..
T Consensus 257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~ 334 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPT 334 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSS
T ss_pred CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCC
Confidence 789999988 77554433 36678999999 99999997764 567999999876433 22222221
Q ss_pred CeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEE-EEecCCCEEEEE-ECCC--cEEEecCCc
Q psy3640 497 EVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSG-SQDT--TCRLWSTES 572 (616)
Q Consensus 497 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~-s~dg--~i~iwd~~~ 572 (616)
....+..++|+|||+++++++.+|.+.+|.++.... ...+..|...+..+ .|+|+|+.|+.. +.++ .++||++..
T Consensus 335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 111234679999999999999999888887753233 66777888889887 599999977654 4455 899999874
Q ss_pred -CeeeeEeccCcccEEEEEEeeCCCEEEEeeCC----CcEEEcccCC
Q psy3640 573 -GECIQVLKAHEDDVFSCGFNYNGDTIITASKD----NTCCIWRSMN 614 (616)
Q Consensus 573 -~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D----g~i~vW~~~~ 614 (616)
+.....+.. ...+.+++|+|||++|+....+ +.+.+|+...
T Consensus 414 ~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 414 QGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp TCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 666667765 5668999999999988876544 4678887643
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.95 E-value=1.4e-25 Score=247.13 Aligned_cols=312 Identities=15% Similarity=0.178 Sum_probs=222.8
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEE-EEEeccC-----------------CcEEEEEEcCCCCEEEEECCCc
Q psy3640 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQ-----------------NVVYAVAFSEPYGCLTGSYDRT 251 (616)
Q Consensus 190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~I~~l~fs~~~~lls~s~d~~ 251 (616)
+..+.|. |+.+++++.++ | +||+.+++.+ ..+..|. ..|.+++|+|| ..+..+.++.
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~ 102 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGG 102 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCE
Confidence 4446777 77788888888 8 9999999883 4444333 56999999999 6554456799
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC-----cceeEEeeec--------------
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-----EECIQTYRGH-------------- 312 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~-------------- 312 (616)
|++||+.+++... +..+...+.+++|+ |+++.|+++ .++.|++|++.+ ++.......+
T Consensus 103 i~~~d~~~~~~~~-l~~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 103 LVGFDMLARKVTY-LFDTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEETTTTEEEE-EECCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEECCCCceEE-ccCCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 9999999987654 44567788999999 899999985 679999999998 7665433322
Q ss_pred ---eeeEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEee--cCCcC
Q psy3640 313 ---SAEVTFSPDQSTFCSCS---------------------------------MDHTARIFNTNSGQEMHTLK--AHTGP 354 (616)
Q Consensus 313 ---~~~v~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~--~~~~~ 354 (616)
...++|+||+++|++++ .+..|.+||+.+++...... .|...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 25679999999999987 44679999999887654432 46677
Q ss_pred EEEEEEcCCCCEEEEEECCC-----cEEEEecccccCCcccccccccccCCcceEEEe--cCcc---ceeEEEEcc--CC
Q psy3640 355 VISLQFSSDRNMLITGSFDS-----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQ---EISNCLFNF--SN 422 (616)
Q Consensus 355 v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~ 422 (616)
+.+++|+|||+.|++++.++ .|++||+. .......+. .+.. .+..++|+| ++
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg 323 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNN 323 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------------TCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------------CCceeeEEEEccCCCeECccCCceeecCCCC
Confidence 99999999999999988775 89999986 331222221 1221 246789999 99
Q ss_pred CEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEE-EEEcCCCCEEEEEeCCC-----cEEEEecCCceeeeeEEeccC
Q psy3640 423 SMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQ-----TANLWTVGGAVELLQTFYGHS 495 (616)
Q Consensus 423 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 495 (616)
+++++++.++.+++|++. ++..+..+..+...+.+ ++|+|+++.|+.++.+. .|..|+..++
T Consensus 324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~----------- 392 (706)
T 2z3z_A 324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG----------- 392 (706)
T ss_dssp EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-----------
T ss_pred EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-----------
Confidence 999999999999999876 56667777777777876 78999988776665442 3333343321
Q ss_pred CCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC----CcEEEecCC
Q psy3640 496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD----TTCRLWSTE 571 (616)
Q Consensus 496 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iwd~~ 571 (616)
. ...+ .|...+..++|+|||++++.+..+ +.|++||+.
T Consensus 393 -----------------------------------~--~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 393 -----------------------------------K--TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -----------------------------------C--CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred -----------------------------------C--ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 1 1111 245567888888888887766433 458889888
Q ss_pred cCe
Q psy3640 572 SGE 574 (616)
Q Consensus 572 ~~~ 574 (616)
+++
T Consensus 435 ~~~ 437 (706)
T 2z3z_A 435 KGS 437 (706)
T ss_dssp SCE
T ss_pred CCe
Confidence 776
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2e-26 Score=254.62 Aligned_cols=345 Identities=12% Similarity=0.060 Sum_probs=245.4
Q ss_pred cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCC---cEEEEEEeCCCCCEEEEEECC---------CeEEEE
Q psy3640 231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGDKILTGSFD---------KTLKLW 298 (616)
Q Consensus 231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~d---------g~i~iw 298 (616)
.+.+++|+||+++++.+.||+|++||+.+++....+..|.. .|.+++|+ |++++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEEC-CCCCEEEEEecCccceeecceeeEEEE
Confidence 46788999999988668999999999999998888887765 49999999 899999999875 788899
Q ss_pred eCCCcceeEEee---ec---eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCE-----------------
Q psy3640 299 ASAKEECIQTYR---GH---SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV----------------- 355 (616)
Q Consensus 299 d~~~~~~~~~~~---~~---~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v----------------- 355 (616)
|+.+++. ..+. ++ ...++|+|||+.++.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 9999876 3332 22 345689999999999886 789999999888776655544333
Q ss_pred -EEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640 356 -ISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 356 -~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
.+++|+|||+.|++++.+ +.+.+|++.... . .+...+..+.|.++|.. ..+..
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~~G~~----~~~~~ 229 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------G-------SIYPTVKPYHYPKAGSE----NPSIS 229 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------S-------SSSCCCEEEECCBTTSC----CCEEE
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccC--------------C-------cCCCcceeccCCCCCCC----CCeeE
Confidence 789999999999988765 467788764211 0 02234667777777652 33458
Q ss_pred EEEEeCCCCeEEEEeecC------CCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCCceeeeeEEeccCCCeee-EE
Q psy3640 434 AKLWDVRTMCCFYTLKNH------EDEVLDIAFDYSGSKLATASS----DQTANLWTVGGAVELLQTFYGHSNEVSK-VL 502 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~ 502 (616)
|++||+.+++....+..+ ...+.+++|+|||+++++... +..|.+||+.++.........+...... ..
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999988765666544 567899999999998877653 3579999998764322221211111110 12
Q ss_pred EEEEcCCCCEEEE--EeCCC------cEEEEe-cCCceE-EeEEeeccccCEEE-EEEecCCCEEEEEECC---CcEEEe
Q psy3640 503 DIAFDYSGSKLAT--ASSDQ------TAKLWT-VGGAVE-LLQTFYGHSNEVSK-VSFHPTGKLVLSGSQD---TTCRLW 568 (616)
Q Consensus 503 ~~~~s~~~~~l~~--~~~dg------~i~vwd-~~~~~~-~~~~~~~h~~~v~~-l~~spdg~~l~s~s~d---g~i~iw 568 (616)
.++|+|||+.|+. +..++ .|.+|| ..++.. ....+..+...+.. ++|+|||+.|+..+.+ +.+++|
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 5799999997775 44566 566677 333220 12333333444554 6999999999876655 789999
Q ss_pred cCCcCe--eeeEecc---CcccEEEEEEeeCCCEEEEeeC
Q psy3640 569 STESGE--CIQVLKA---HEDDVFSCGFNYNGDTIITASK 603 (616)
Q Consensus 569 d~~~~~--~~~~~~~---h~~~V~~l~~s~~~~~l~t~s~ 603 (616)
++.... ....+.. |...+..++|+|||++|+....
T Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 986432 3444443 6677889999999998876543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=1.3e-24 Score=239.23 Aligned_cols=321 Identities=13% Similarity=0.092 Sum_probs=227.5
Q ss_pred EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce--eEEeee-------------------ceeeEEEcCCCCEEEEEeCC
Q psy3640 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC--IQTYRG-------------------HSAEVTFSPDQSTFCSCSMD 331 (616)
Q Consensus 273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-------------------~~~~v~~~~~~~~l~~~~~d 331 (616)
+..+.|. ++.+++++.++ | +||+.+++. ...+.. ....++|+|+ ..++.+. +
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4456776 67788888888 8 999999987 333322 2445789999 6666654 5
Q ss_pred CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC--
Q psy3640 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-- 409 (616)
Q Consensus 332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 409 (616)
+.+++||+.+++... +..+...+.+++|+|||+.|+++ .++.|++||+....+. ..........+
T Consensus 101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~-----------~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG-----------MSRAIAVTIDGTE 167 (706)
T ss_dssp TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC-----------CCCCEESCSCCBT
T ss_pred CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc-----------CCCcEEeccCCCC
Confidence 999999999886544 44467778899999999999985 5899999999740000 02221111111
Q ss_pred ------------ccceeEEEEccCCCEEEEEe---------------------------------CCCcEEEEeCCCCeE
Q psy3640 410 ------------SQEISNCLFNFSNSMIASSS---------------------------------LDGTAKLWDVRTMCC 444 (616)
Q Consensus 410 ------------~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~ 444 (616)
...+.++.|+|+|+.|++++ .+..|++||+.+++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~ 247 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT 247 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence 22358899999999999987 446799999999876
Q ss_pred EEEee--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCceeeeeEEe-ccCCCeeeEEEEEEcC--CCCEEE
Q psy3640 445 FYTLK--NHEDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGAVELLQTFY-GHSNEVSKVLDIAFDY--SGSKLA 514 (616)
Q Consensus 445 ~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~--~~~~l~ 514 (616)
..... .+...+.+++|+|+|+.|++++.++ .|.+||+.++........ ........+..++|+| +|++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 55442 4567799999999999999987775 899999987622222221 1111111234579999 999999
Q ss_pred EEeCCCcEEEEecCCceEEeEEeeccccCEEE-EEEecCCCEEEEEECC-C----cEEEecCCcCeeeeEeccCcccEEE
Q psy3640 515 TASSDQTAKLWTVGGAVELLQTFYGHSNEVSK-VSFHPTGKLVLSGSQD-T----TCRLWSTESGECIQVLKAHEDDVFS 588 (616)
Q Consensus 515 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~d-g----~i~iwd~~~~~~~~~~~~h~~~V~~ 588 (616)
++..++.+++|.+.........+..|...+.. ++|+|+|+.|+.++.+ + .|..||..+++ ...+. |...+.+
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~ 405 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHR 405 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEE
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEE
Confidence 99999999999886333556667778888877 7999999988766554 3 57777777765 34443 6677999
Q ss_pred EEEeeCCCEEEEeeCC----CcEEEcccCCC
Q psy3640 589 CGFNYNGDTIITASKD----NTCCIWRSMNR 615 (616)
Q Consensus 589 l~~s~~~~~l~t~s~D----g~i~vW~~~~~ 615 (616)
++|+|||++|+.++.+ +.+++|++.+.
T Consensus 406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred EEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 9999999988876544 46999998764
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.2e-25 Score=248.40 Aligned_cols=356 Identities=12% Similarity=0.089 Sum_probs=249.5
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCC---cEEEEEEcCCCCEE-EEECC---------CcEEEE
Q psy3640 189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGCL-TGSYD---------RTCKLW 255 (616)
Q Consensus 189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~---~I~~l~fs~~~~ll-s~s~d---------~~I~iw 255 (616)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++||||++.+ +++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4778999999998877 7899999999999998888887775 49999999999955 55543 789999
Q ss_pred eCCCCceEEEee---CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece-------------------
Q psy3640 256 DIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS------------------- 313 (616)
Q Consensus 256 d~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~------------------- 313 (616)
|+.+++. ..+. +|...+..++|+ |+++.|++++. +.|++||+.+++.......+.
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred ECCCCce-EeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 9999876 3343 344558899999 89999999887 799999999988766554322
Q ss_pred --eeEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 314 --AEVTFSPDQSTFCSCSMD-HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 314 --~~v~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
..++|+||++.|++++.+ +.+.+|++..... .+...+..+.|.++|.. ..+..|++||+.
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~-------- 236 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE----NPSISLHVIGLN-------- 236 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC----CCEEEEEEEESS--------
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC----CCeeEEEEEECC--------
Confidence 468999999999988755 4677777643221 13345788888887752 334589999986
Q ss_pred ccccccccCCcceEEEec------CccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEEEEeec-CCCCE----
Q psy3640 391 YAESTYRASHKPIHILTG------HSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCCFYTLKN-HEDEV---- 455 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~-~~~~v---- 455 (616)
.......+.. +...+..++|+|+|+++++.... ..|++||+.+++....+.. +...+
T Consensus 237 --------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 308 (723)
T 1xfd_A 237 --------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN 308 (723)
T ss_dssp --------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred --------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC
Confidence 3322233333 35678899999999988776533 5799999999887666543 33433
Q ss_pred EEEEEcCCCCEEEE--EeCCC------cEEEEe-cCCcee-eeeEEeccCCCeeeEE-EEEEcCCCCEEEEEeCC---Cc
Q psy3640 456 LDIAFDYSGSKLAT--ASSDQ------TANLWT-VGGAVE-LLQTFYGHSNEVSKVL-DIAFDYSGSKLATASSD---QT 521 (616)
Q Consensus 456 ~~l~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d---g~ 521 (616)
..++|+|+|+.|+. ...++ .+.+|| ..+... ....+.... ..+. .++|+|+|+.|+..+.+ +.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~ 385 (723)
T 1xfd_A 309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD---WDVTKILAYDEKGNKIYFLSTEDLPRR 385 (723)
T ss_dssp CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS---SCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC---eEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence 37899999997775 45666 466677 333220 012222111 1233 36899999999877665 78
Q ss_pred EEEEecCCceE-EeEEeec---cccCEEEEEEecCCCEEEEEECC-C--cEEEecCCcCeee
Q psy3640 522 AKLWTVGGAVE-LLQTFYG---HSNEVSKVSFHPTGKLVLSGSQD-T--TCRLWSTESGECI 576 (616)
Q Consensus 522 i~vwd~~~~~~-~~~~~~~---h~~~v~~l~~spdg~~l~s~s~d-g--~i~iwd~~~~~~~ 576 (616)
+++|++..... ....+.. |...+..++|+|||++|+..... . ...+++..++..+
T Consensus 386 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~ 447 (723)
T 1xfd_A 386 RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (723)
T ss_dssp CEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred eEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence 99999864221 2223333 56778999999999988875432 2 2344455444433
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.4e-23 Score=208.44 Aligned_cols=279 Identities=11% Similarity=0.100 Sum_probs=203.3
Q ss_pred EcCCCCE-EEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccc
Q psy3640 318 FSPDQST-FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 318 ~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
|.+++.. +++...++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||..
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~------------- 70 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ------------- 70 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-------------
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-------------
Confidence 4455554 6677778999999999999888887666667 9999999997777666 8899999997
Q ss_pred cccCCcc-eEEEecCccceeEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE-
Q psy3640 396 YRASHKP-IHILTGHSQEISNCLFNFSNSMIASSSLDG---TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA- 470 (616)
Q Consensus 396 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~- 470 (616)
.... ...+..+..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. .....+++|+|+|++++++
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 71 ---LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp ---SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred ---CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence 4444 555666666666699999999999655553 899999999998887764 4557999999999866555
Q ss_pred eCCCc-EEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE--EeEEeeccccCEEE
Q psy3640 471 SSDQT-ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE--LLQTFYGHSNEVSK 546 (616)
Q Consensus 471 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~ 546 (616)
..++. +.+|++......................++|+|+|+++++++ .++.|.+||+.++.. .+..+. ....+..
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~ 225 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGT 225 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCC
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCce
Confidence 55588 999998754332211111001122357899999999766555 689999999986533 144444 3467789
Q ss_pred EEEecCCCEEEEEE-CCCcEEEecCCcCee--eeEeccC----cc---cEEEEEEeeCCCEEEEeeC-CCcEEEcccCCC
Q psy3640 547 VSFHPTGKLVLSGS-QDTTCRLWSTESGEC--IQVLKAH----ED---DVFSCGFNYNGDTIITASK-DNTCCIWRSMNR 615 (616)
Q Consensus 547 l~~spdg~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~h----~~---~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~~~ 615 (616)
++|+|||++|++++ .++.|.+||+.+++. +..+..+ .. ....++|+|||++|++++. ++.|.+|++.++
T Consensus 226 ~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 226 IVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp EEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred EEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 99999999776654 578899999999887 4443322 22 2355899999998866555 579999999764
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.93 E-value=3.2e-22 Score=200.41 Aligned_cols=268 Identities=8% Similarity=0.055 Sum_probs=217.0
Q ss_pred CCcceEEEEECCCCCEEEEEEC-------CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEe
Q psy3640 186 HLLPLTNITFDKFGTRCLTGSY-------DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWD 256 (616)
Q Consensus 186 h~~~i~~v~~s~~g~~lasgs~-------dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd 256 (616)
....+..++|+|+|+++++++. ++.|.+||..+++.+..+... ..+..++|+|+++ ++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4557889999999999988874 468999999999988888753 4478899999998 43 555679999999
Q ss_pred CCCCceEEEeeCCCCc---------EEEEEEeCCCCCEEEEEE--CCCeEEEEeCCCcceeEEeeec---eeeEEEcCCC
Q psy3640 257 IKSGHEICTYRGHQNV---------VYAVAFSEPYGDKILTGS--FDKTLKLWASAKEECIQTYRGH---SAEVTFSPDQ 322 (616)
Q Consensus 257 ~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~ 322 (616)
..+++.+..+..+... +.+++|+ ++++.+++++ .++.|.+||..+++....+..+ ...++++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 9999998888765432 7899999 7788777766 4789999999999988887622 4567999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeec----CCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccc
Q psy3640 323 STFCSCSMDHTARIFNTNSGQEMHTLKA----HTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYR 397 (616)
Q Consensus 323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~ 397 (616)
+.+++++.++.+.+||..+++....+.. +...+.+++|+|+++.+++++.+ +.|.+||..
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~--------------- 261 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR--------------- 261 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT---------------
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence 9999999999999999999998887764 45568899999999987777654 899999987
Q ss_pred cCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640 398 ASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 474 (616)
.......+.... ...++|+|+++.++++. .++.|.+||..+++.+..+.. ...+.+++|+|+|++++++..++
T Consensus 262 -~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 262 -NGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -TCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred -CCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 444444444333 25689999999666655 689999999999998888764 44789999999999887776654
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.6e-24 Score=207.83 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=194.3
Q ss_pred EeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC-CcceEEE
Q psy3640 328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS-HKPIHIL 406 (616)
Q Consensus 328 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~ 406 (616)
++.++.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|++||+. . .......
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~----------------~~~~~~~~~ 79 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLA----------------GDPSPEKVD 79 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESS----------------SCCSCEECC
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCC----------------CCCCceEec
Confidence 456789999999988766 4455889999999999999999987 8899999997 3 3344444
Q ss_pred ecC-ccceeEEEEccCCCEEEEEeC--CC--cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEe
Q psy3640 407 TGH-SQEISNCLFNFSNSMIASSSL--DG--TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA-TASSDQTANLWT 480 (616)
Q Consensus 407 ~~~-~~~i~~~~~~~~~~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd 480 (616)
..+ ...+.+++|+|+++.+++++. ++ .|..++..++. ...+.. ...+..++|+|+++.++ +++.++.+++|+
T Consensus 80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~ 157 (297)
T 2ojh_A 80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYS 157 (297)
T ss_dssp CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEE
Confidence 444 367889999999999999983 33 45555555554 334443 33589999999999887 777899999998
Q ss_pred cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640 481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~ 559 (616)
+.........+..+. ..+..++|+|+++++++++ .++.+.+|++.........+..|...+..++|+|+|++|+++
T Consensus 158 ~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 158 MDIDSGVETRLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EETTTCCEEECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EECCCCcceEcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 643222223333322 3467899999999888776 589999999863334556677788889999999999999988
Q ss_pred ECC-----------CcEEEecCCcCee--eeEeccCcccEEEEEEeeCCCEEEEeeCCC
Q psy3640 560 SQD-----------TTCRLWSTESGEC--IQVLKAHEDDVFSCGFNYNGDTIITASKDN 605 (616)
Q Consensus 560 s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg 605 (616)
+.+ +.|.+||+.+++. +..+.+|...+.+++|+|++++|++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 766 5699999998866 444557888899999999999999887764
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=4.7e-23 Score=205.53 Aligned_cols=273 Identities=12% Similarity=0.139 Sum_probs=192.7
Q ss_pred EEEEeCCCcEEEEECC-CCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCC
Q psy3640 325 FCSCSMDHTARIFNTN-SGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 325 l~~~~~dg~i~i~d~~-~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
+++++.++.|.+||+. +++ .+.. ..+...+.+++|+|+++++++++.+ +.|.+|++..... ..
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~------------~~ 74 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG------------AL 74 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC------------CE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC------------ce
Confidence 3444678999999985 332 2333 3467788999999999999998887 9999999862100 11
Q ss_pred cceEEEecCccceeEEEEccCCCEEEEEeC-CCcEEEEeC---CCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCc
Q psy3640 401 KPIHILTGHSQEISNCLFNFSNSMIASSSL-DGTAKLWDV---RTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS-SDQT 475 (616)
Q Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~ 475 (616)
..+..+..+. .+..++|+|+++.+++++. ++.|.+||+ .+.+....+. ....+.+++|+|+++++++++ .++.
T Consensus 75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCE
Confidence 2233333333 7889999999998877765 788999999 4444455544 334688999999999888887 8999
Q ss_pred EEEEecCCceeeeeEE--eccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--ce-EEeEEee----cc--ccC
Q psy3640 476 ANLWTVGGAVELLQTF--YGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGG--AV-ELLQTFY----GH--SNE 543 (616)
Q Consensus 476 i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~~-~~~~~~~----~h--~~~ 543 (616)
+.+|++.......... .........+..++|+|+++++++++ .++.+.+|++.. +. ....... ++ ...
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 232 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 232 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence 9999997622222111 11111123466799999999876665 789999999953 21 1122222 11 235
Q ss_pred EEEEEEecCCCEEEEEE-CCCcEEEecCC----cCeeeeEeccCcccEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640 544 VSKVSFHPTGKLVLSGS-QDTTCRLWSTE----SGECIQVLKAHEDDVFSCGFNYNGDTIITAS-KDNTCCIWRSM 613 (616)
Q Consensus 544 v~~l~~spdg~~l~s~s-~dg~i~iwd~~----~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~ 613 (616)
+..++|+|+|++|+++. .++.|.+||+. +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|++.
T Consensus 233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 77899999999887554 78999999998 3355566665555 88999999999888887 68999999664
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.6e-22 Score=200.83 Aligned_cols=273 Identities=11% Similarity=0.116 Sum_probs=204.0
Q ss_pred EEECCCCCE-EEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEE-CCCcEEEEeCCCCce-EEEeeC
Q psy3640 193 ITFDKFGTR-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGS-YDRTCKLWDIKSGHE-ICTYRG 268 (616)
Q Consensus 193 v~~s~~g~~-lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s-~d~~I~iwd~~~~~~-~~~~~~ 268 (616)
..|++++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++ +++++ .++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456666665 6677788999999999999988888777777 999999998 44444 489999999999998 777777
Q ss_pred CCCcEEEEEEeCCCCCEEEEEECCC---eEEEEeCCCcceeEEeeec--eeeEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGSFDK---TLKLWASAKEECIQTYRGH--SAEVTFSPDQSTFCSC-SMDHT-ARIFNTNS 341 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~l~~~-~~dg~-i~i~d~~~ 341 (616)
+..+..+++|+ |++++++++..++ .|.+||+.+++.+..+..+ ...++|+|++++++++ ..++. +.+|++..
T Consensus 82 ~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 77776669999 8899988555553 8999999999888776543 3567999999865554 55588 99999876
Q ss_pred Ccee----EEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcc---eEEEecCccce
Q psy3640 342 GQEM----HTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKP---IHILTGHSQEI 413 (616)
Q Consensus 342 ~~~~----~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i 413 (616)
...+ ............++|+|+|+++++++ .++.|.+||+. .... +..+.. ...+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~----------------~~~~~~~~~~~~~-~~~~ 223 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ----------------NPENITLLNAVGT-NNLP 223 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS----------------STTSCEEEEEEEC-SSCC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC----------------CCcccceeeeccC-CCCC
Confidence 4433 12223445679999999999665555 58899999987 3333 444443 3567
Q ss_pred eEEEEccCCCEEEEEe-CCCcEEEEeCCCCeE--EEEeecC----CC---CEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q psy3640 414 SNCLFNFSNSMIASSS-LDGTAKLWDVRTMCC--FYTLKNH----ED---EVLDIAFDYSGSKLATASS-DQTANLWTVG 482 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~---~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~ 482 (616)
..++|+|++++++++. .++.|.+||+.+++. +..+... .. ....++|+|++++|++++. ++.+.+||+.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 8899999999776665 467899999999876 4433322 21 2356899999998876655 5699999997
Q ss_pred Cc
Q psy3640 483 GA 484 (616)
Q Consensus 483 ~~ 484 (616)
..
T Consensus 304 ~~ 305 (331)
T 3u4y_A 304 GK 305 (331)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=4.1e-22 Score=199.70 Aligned_cols=272 Identities=11% Similarity=0.099 Sum_probs=210.9
Q ss_pred ceeeEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEeccc
Q psy3640 312 HSAEVTFSPDQSTFCSCSM-------DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQY 383 (616)
Q Consensus 312 ~~~~v~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~ 383 (616)
....++++|+++.+++++. ++.|.+||..+++.+..+.. ...+..++|+|+++.++++ ..++.|.+||..
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~- 119 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK- 119 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC-
Confidence 3456788999988887774 46799999999998888764 3446889999999966555 447999999987
Q ss_pred ccCCcccccccccccCCcceEEEecCcc---------ceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCC
Q psy3640 384 QFGTRNAYAESTYRASHKPIHILTGHSQ---------EISNCLFNFSNSMIASSS--LDGTAKLWDVRTMCCFYTLKNHE 452 (616)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~ 452 (616)
.......+..+.. .+..++++|+++.+++++ .++.|.+||..+++....+..+.
T Consensus 120 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 120 ---------------TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp ---------------TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred ---------------CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 4444444444332 267899999999887776 47889999999999988887666
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-CcEEEEecCCce
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-QTAKLWTVGGAV 531 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~ 531 (616)
..+.+++|+|+++++++++.++.+.+||..+.................+..++++|+++++++++.+ +.|.+||..++.
T Consensus 185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 6788999999999999999999999999988754433333233334457789999999988777664 999999998753
Q ss_pred EEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCC
Q psy3640 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD 604 (616)
Q Consensus 532 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D 604 (616)
....+.... ...++|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+|+|++|+++..+
T Consensus 265 -~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 265 -ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred -EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence 444443332 25699999999766665 68999999999999998887654 57899999999977776665
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.4e-22 Score=200.36 Aligned_cols=295 Identities=9% Similarity=0.114 Sum_probs=204.2
Q ss_pred EEEEEECCCeEEEEeCC-Cc--ceeEEee--eceeeEEEcCCCCEEEEEeCC-CcEEEEECC--CCc--eeEEeecCCcC
Q psy3640 285 KILTGSFDKTLKLWASA-KE--ECIQTYR--GHSAEVTFSPDQSTFCSCSMD-HTARIFNTN--SGQ--EMHTLKAHTGP 354 (616)
Q Consensus 285 ~l~s~s~dg~i~iwd~~-~~--~~~~~~~--~~~~~v~~~~~~~~l~~~~~d-g~i~i~d~~--~~~--~~~~~~~~~~~ 354 (616)
.+++++.|+.|++|++. ++ +.+..+. .....++|+|+++++++++.+ +.|.+|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 34444779999999985 33 2333332 234467999999999988887 999999997 554 334444433 7
Q ss_pred EEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCC
Q psy3640 355 VISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDG 432 (616)
Q Consensus 355 v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg 432 (616)
+..++|+|+++++++++. ++.|.+||+.... ......... ....+..++|+|+++.+++++ .++
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 151 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------------PVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQD 151 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------------EEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------------ccccccccc-CCCCceEEEECCCCCEEEEecCCCC
Confidence 889999999998877765 7889999984100 122233333 334578899999999888887 889
Q ss_pred cEEEEeCCC-CeEEE----Eeec-CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--cee-eeeEEeccC---CCee
Q psy3640 433 TAKLWDVRT-MCCFY----TLKN-HEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGG--AVE-LLQTFYGHS---NEVS 499 (616)
Q Consensus 433 ~i~iwd~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~-~~~~~~~~~---~~~~ 499 (616)
.|.+||+.+ ++... .+.. ....+..++|+|+++++++++ .++.+.+|++.. +.. ......... ....
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 999999987 64432 2222 345788999999999776655 789999999954 211 122222111 1234
Q ss_pred eEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--c-eEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEec--CCc
Q psy3640 500 KVLDIAFDYSGSKLATAS-SDQTAKLWTVGG--A-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWS--TES 572 (616)
Q Consensus 500 ~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd--~~~ 572 (616)
.+..++|+|++++|+++. .++.|.+|++.. + ...+..+..+.. +..++|+|+|++|++++ .++.|.+|+ ..+
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 566899999999887555 789999999972 2 344444554444 88999999999888887 689999994 446
Q ss_pred Ce--eeeEeccCcccEEEEEEeeCCC
Q psy3640 573 GE--CIQVLKAHEDDVFSCGFNYNGD 596 (616)
Q Consensus 573 ~~--~~~~~~~h~~~V~~l~~s~~~~ 596 (616)
++ .+..+... ....+++|.++.+
T Consensus 311 g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 311 GLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp TEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred ceeeEccccccC-CCCeeEEEEcccC
Confidence 64 34455443 3356788887654
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=8.4e-23 Score=203.14 Aligned_cols=266 Identities=8% Similarity=0.025 Sum_probs=205.0
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeecCCc--CEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccccccccC
Q psy3640 323 STFCSCSMDHTARIFNTNSGQEMHTLKAHTG--PVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399 (616)
Q Consensus 323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 399 (616)
.++++++.++.|.+||+.+++.+..+..... .+..++|+|+++.+++ +..++.|.+||+. .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~----------------~ 65 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV----------------T 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT----------------T
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC----------------C
Confidence 4688888999999999999988887763332 4788999999987654 5557899999986 4
Q ss_pred CcceEEEecC-----ccceeEEEEccCCCEEEEEe------------CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC
Q psy3640 400 HKPIHILTGH-----SQEISNCLFNFSNSMIASSS------------LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462 (616)
Q Consensus 400 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~ 462 (616)
......+... ...+..++|+|+++.++++. .++.|.+||+.+++....+.. ...+.+++|+|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence 4444433321 22567899999999998886 579999999999988877764 45678899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC----------------------
Q psy3640 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ---------------------- 520 (616)
Q Consensus 463 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---------------------- 520 (616)
++++++++ ++.+.+||+.+.... ..+....... .+.|+|++..++..+..+
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~-~~~~~~~~~~----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLV-EDKPIQSWEA----ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY 217 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEE-EEECSTTTTT----TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEe-eeeeccccCC----CceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence 99988888 689999999876433 2232222111 126788888776554332
Q ss_pred --cEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE
Q psy3640 521 --TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI 598 (616)
Q Consensus 521 --~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 598 (616)
.|.+||..++......+..+...+..++|+|+|++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus 218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence 468999988655444556677788999999999999988 689999999999988887754 457889999999999
Q ss_pred EEeeCCCcEEEcccCCC
Q psy3640 599 ITASKDNTCCIWRSMNR 615 (616)
Q Consensus 599 ~t~s~Dg~i~vW~~~~~ 615 (616)
++++.|+.|.+||+.+.
T Consensus 295 ~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 295 WLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEESBSSEEEEEETTTC
T ss_pred EEEcCCCcEEEEECcCC
Confidence 99999999999999764
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=5.8e-22 Score=197.04 Aligned_cols=274 Identities=8% Similarity=0.003 Sum_probs=209.0
Q ss_pred CEEEEEECCCeEEEEeCCCcceeEEeee-----ceeeEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEeecC-----C
Q psy3640 284 DKILTGSFDKTLKLWASAKEECIQTYRG-----HSAEVTFSPDQSTFCS-CSMDHTARIFNTNSGQEMHTLKAH-----T 352 (616)
Q Consensus 284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~-----~ 352 (616)
+++++++.++.|.+||..+++.+..+.. ....++++|+++.+++ +..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887753 3466899999987654 555789999999999888776532 1
Q ss_pred cCEEEEEEcCCCCEEEEEE------------CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640 353 GPVISLQFSSDRNMLITGS------------FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 420 (616)
..+.+++|+|+|+++++++ .++.|.+||+. .......+.. ...+..++|+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~----------------~~~~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----------------TLSRRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----------------TTEEEEEEEC-CSSCCCEEECT
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC----------------CCcEEEEEeC-CCCcceeEECC
Confidence 2567899999999998886 57999999986 4444444443 44577889999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC------------------------cE
Q psy3640 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ------------------------TA 476 (616)
Q Consensus 421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg------------------------~i 476 (616)
+++.++++ ++.|.+||+.+++....+..+.. ...+.|+|++..++..+..+ .+
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 99988887 68899999999988877764431 11237899988776554333 36
Q ss_pred EEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640 477 NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV 556 (616)
Q Consensus 477 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l 556 (616)
.+||+.+..........+. ..+..++|+|++++++++ ++.|.+||+.+. +....+.. ...+.+++|+|+|++|
T Consensus 222 ~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMD---VFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEEETTTCCEEEEEEEECS---SCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred EEEeCCCCCceEeecCCCC---CceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCCCCEE
Confidence 8899887644322222222 346679999999999988 799999999885 44444443 3567899999999999
Q ss_pred EEEECCCcEEEecCCcCeeeeEeccCcc
Q psy3640 557 LSGSQDTTCRLWSTESGECIQVLKAHED 584 (616)
Q Consensus 557 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 584 (616)
++++.++.|++||+.+++.+..+..+..
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999999999999999999988876543
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.9e-22 Score=196.40 Aligned_cols=253 Identities=13% Similarity=0.068 Sum_probs=197.3
Q ss_pred EEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCC-CceEEEeeCC-CCcEEEEEEeCC
Q psy3640 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKS-GHEICTYRGH-QNVVYAVAFSEP 281 (616)
Q Consensus 204 sgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~-~~~~~~~~~h-~~~V~~l~~~~~ 281 (616)
.++.|++|++||+.+++.. .+..|...|.+++|+|++++++.+.++.|++||+.+ ++.......| ...+.+++|+ |
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-p 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS-P 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC-T
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEEC-C
Confidence 3457889999999988766 566689999999999999977666699999999999 8877776666 4788999999 8
Q ss_pred CCCEEEEEEC--CCeEEE--EeCCCcceeEEeee--ceeeEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEeecCCc
Q psy3640 282 YGDKILTGSF--DKTLKL--WASAKEECIQTYRG--HSAEVTFSPDQSTFC-SCSMDHTARIFNTNS-GQEMHTLKAHTG 353 (616)
Q Consensus 282 ~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~--~~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~ 353 (616)
+++.+++++. ++...+ |+..+++. ..+.. ....++|+|+++.++ ++..++.+.+|++.. +.....+..+..
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 8999999993 344555 45555543 33322 234468999999887 777889899998532 334556667888
Q ss_pred CEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC-
Q psy3640 354 PVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD- 431 (616)
Q Consensus 354 ~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 431 (616)
.+.+++|+|+++.+++++ .++.+++|++.. .......+..+...+..+.|+|++++|++++.+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEET---------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECC---------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 999999999999888776 489999999863 234455666777788999999999999888865
Q ss_pred ----------CcEEEEeCCCCeE--EEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640 432 ----------GTAKLWDVRTMCC--FYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 432 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 474 (616)
+.|.+||+.+++. +..+..|...+.+++|+|+++.|++++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988755 444457788899999999999998887653
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.91 E-value=2.6e-21 Score=193.53 Aligned_cols=268 Identities=10% Similarity=0.090 Sum_probs=184.2
Q ss_pred CCcEEEEEC--CCCceeE-EeecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEecccccCCcccccccccccCCcceE
Q psy3640 331 DHTARIFNT--NSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSF---DSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404 (616)
Q Consensus 331 dg~i~i~d~--~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 404 (616)
++.|.+|++ .+++... ....+...+..++|+|+|+ +++++. ++.|.+|++... ....+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--------------~~~~~~ 79 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--------------TAHKLN 79 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT--------------EEEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC--------------cEEEee
Confidence 345666654 4565433 2334556678899999999 555544 689999998521 112334
Q ss_pred EEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCC---CeEEEEeecC---------CCCEEEEEEcCCCCEEEEEe
Q psy3640 405 ILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRT---MCCFYTLKNH---------EDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~---------~~~v~~l~~~~~~~~l~~~~ 471 (616)
....+...+..++|+|+++++++++ .++.+.+|++.. ...+..+... ...+.+++|+|+|+.+++..
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 4455677788999999999888888 678999999962 2333333321 23488999999999666666
Q ss_pred CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCCCcEEEEecCC--ce-EEeEEeeccc------
Q psy3640 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSDQTAKLWTVGG--AV-ELLQTFYGHS------ 541 (616)
Q Consensus 472 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~--~~-~~~~~~~~h~------ 541 (616)
.++.+.+|++......................++|+|+|+++++ ...++.+.+|++.. +. ..........
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 78899999998322221111111111223567999999997666 45688999999863 22 2233333332
Q ss_pred cCEEEEEEecCCCEE-EEEECCCcEEEecCCc---CeeeeEeccCcccEEEEEEeeCCCEEEEeeCC-CcEEEcccC
Q psy3640 542 NEVSKVSFHPTGKLV-LSGSQDTTCRLWSTES---GECIQVLKAHEDDVFSCGFNYNGDTIITASKD-NTCCIWRSM 613 (616)
Q Consensus 542 ~~v~~l~~spdg~~l-~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D-g~i~vW~~~ 613 (616)
..+..++|+|||++| ++...++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|.+|++.
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 348899999999987 4556789999999973 25566666666678899999999998888765 899999554
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=4.7e-23 Score=227.30 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=228.5
Q ss_pred EEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCC---cEEEEEEeCCCCCEEEEEEC---------CCeEEEEeCC
Q psy3640 234 AVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGDKILTGSF---------DKTLKLWASA 301 (616)
Q Consensus 234 ~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~ 301 (616)
+++|+|+++++..+.|++|++||+.+++....+.+|.. .+.+++|+ |++++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 67999999988888899999999999998877776544 48999999 89999999876 7899999999
Q ss_pred Cccee--EEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCE-----------------EEEEEc
Q psy3640 302 KEECI--QTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPV-----------------ISLQFS 361 (616)
Q Consensus 302 ~~~~~--~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~~l~~~ 361 (616)
+++.+ ..+......++|+|||+.|+.+. ++.|++||+.+++..... .++...+ .+++|+
T Consensus 99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS 177 (719)
T 1z68_A 99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS 177 (719)
T ss_dssp TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence 98773 23345566789999999999886 789999999888765432 2232222 489999
Q ss_pred CCCCEEEEEECCC----------------------------------cEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 362 SDRNMLITGSFDS----------------------------------SIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 362 ~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
|||+.|++++.|. .|++||+........ . .......+.
T Consensus 178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~------~--~~~~~~~~~ 249 (719)
T 1z68_A 178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP------Q--EVPVPAMIA 249 (719)
T ss_dssp TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC------E--ECCCCHHHH
T ss_pred CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce------e--EccCCccCC
Confidence 9999999988652 677787752110000 0 000001123
Q ss_pred cCccceeEEEEccCCCEEEEEeCC----CcEEEEe----CCCCeEEEEe----ecCCCCEE-----EEEEcCCCCEEEE-
Q psy3640 408 GHSQEISNCLFNFSNSMIASSSLD----GTAKLWD----VRTMCCFYTL----KNHEDEVL-----DIAFDYSGSKLAT- 469 (616)
Q Consensus 408 ~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~~- 469 (616)
+|...+..++|+|+++++++.... ..|.+|| +.+++....+ ..+...+. .++|+|+|+.++.
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 577788999999998777765433 2488999 8887765555 35666666 7899999996654
Q ss_pred -EeCCC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC--ceEEeEEee-
Q psy3640 470 -ASSDQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGG--AVELLQTFY- 538 (616)
Q Consensus 470 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~--~~~~~~~~~- 538 (616)
...+| .|.+|++.+.. ...+..+. ..+..+.++ +++.++..+.+ +..++|.+.. +......+.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~--~~~lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN--AIQITSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp EECTTSCEEEEEESSCSTT--CEECSCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred EEccCCceEEEEEECCCCc--eEecccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 44555 46666765543 22222222 224455566 78877777665 7888888753 211112232
Q ss_pred ---ccccCEEEEEEecCCCEEEEE-ECC--CcEEEecCCcCeeeeEe
Q psy3640 539 ---GHSNEVSKVSFHPTGKLVLSG-SQD--TTCRLWSTESGECIQVL 579 (616)
Q Consensus 539 ---~h~~~v~~l~~spdg~~l~s~-s~d--g~i~iwd~~~~~~~~~~ 579 (616)
+|...+..+.|+|++++++.. +.+ ..+.+||+.+++++..+
T Consensus 404 ~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 256678899999999877754 333 46889999888765444
No 151
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=1.5e-22 Score=217.35 Aligned_cols=268 Identities=11% Similarity=0.061 Sum_probs=203.5
Q ss_pred CcceEEEEECCCCCEEEEEEC-CCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEE-EEEC---CCcEEEEeCCC-
Q psy3640 187 LLPLTNITFDKFGTRCLTGSY-DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCL-TGSY---DRTCKLWDIKS- 259 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~ll-s~s~---d~~I~iwd~~~- 259 (616)
..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| +++ +++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 447999999999999999887 999999999666554 555555 68999999999 755 4543 45566665533
Q ss_pred --CceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC----C
Q psy3640 260 --GHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD----H 332 (616)
Q Consensus 260 --~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d----g 332 (616)
+... .+..+. .+...+|+ ++++ .+++.+.++.+.+||+.+++.......+...++|+|||+.+++++.+ +
T Consensus 99 ~~g~~~-~l~~~~-~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 99 RPGEEQ-RLEAVK-PMRILSGV-DTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp STTCCE-ECTTSC-SBEEEEEE-ECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEE
T ss_pred CCCccc-cccCCC-CceeeeeC-CCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCe
Confidence 3332 443322 33456787 4554 44444555556699999988776666666778999999999988777 7
Q ss_pred cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
.|++||+.+++.. .+..|...+..++|+|||+.|+++..++ .|++||+. ..... .+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~----------------~~~~~-~~~~~~ 237 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR----------------DGSVE-DLELPS 237 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT----------------TCCEE-ECCCSC
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC----------------CCcEE-EccCCC
Confidence 7999999888754 6677888899999999999999888888 89999986 44444 566676
Q ss_pred cceeEEE--------EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc---EEEE
Q psy3640 411 QEISNCL--------FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT---ANLW 479 (616)
Q Consensus 411 ~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~iw 479 (616)
..+..++ |+|+|.++++++.++.+++|++ ++... ...+.+.+++|+ +++.+++++.+.. +.+|
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 6676667 9999999999999999999999 66544 344678999999 9999888887744 6666
Q ss_pred ecCC
Q psy3640 480 TVGG 483 (616)
Q Consensus 480 d~~~ 483 (616)
+..+
T Consensus 312 d~~~ 315 (582)
T 3o4h_A 312 PSGE 315 (582)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 6654
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=9.6e-20 Score=182.06 Aligned_cols=269 Identities=14% Similarity=0.130 Sum_probs=188.6
Q ss_pred EEEEEEC----CCcEEEEEC--CCCcEEE-EEeccCCcEEEEEEcCCCCEEEEEC---CCcEEEEeCCCCc--eEEEeeC
Q psy3640 201 RCLTGSY----DRTCKLWDI--KSGHEIC-TYRGHQNVVYAVAFSEPYGCLTGSY---DRTCKLWDIKSGH--EICTYRG 268 (616)
Q Consensus 201 ~lasgs~----dg~i~iwd~--~~~~~~~-~~~~h~~~I~~l~fs~~~~lls~s~---d~~I~iwd~~~~~--~~~~~~~ 268 (616)
.+++|++ ++.|.+|++ ++++... ....+...+..++|+|++++++++. ++.|.+||+.+++ .+..+..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~ 83 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA 83 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence 4555643 445777765 4565443 3445667788999999999655554 6899999998776 4445556
Q ss_pred CCCcEEEEEEeCCCCCEEEEEE-CCCeEEEEeCCC-c--ceeEEeee------------ceeeEEEcCCCCEEEEEeCCC
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK-E--ECIQTYRG------------HSAEVTFSPDQSTFCSCSMDH 332 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~-~--~~~~~~~~------------~~~~v~~~~~~~~l~~~~~dg 332 (616)
+...+..++|+ |++++|++++ .++.+.+|++.. + +.+..+.. +...++|+|+++.+++...++
T Consensus 84 ~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred CCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 77888999999 8899888888 689999999963 2 22333322 133579999999666666788
Q ss_pred cEEEEECC-CCceeE--EeecC-CcCEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 333 TARIFNTN-SGQEMH--TLKAH-TGPVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 333 ~i~i~d~~-~~~~~~--~~~~~-~~~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
.|.+|++. +++... .+..+ ...+..++|+|+|+++++ ...++.+.+|++..... .........
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g------------~~~~~~~~~ 230 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG------------AFTQLGIVK 230 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT------------EEEEEEEEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC------------ceEEeeeee
Confidence 99999998 454332 22222 336788999999996666 45678999999863110 001111222
Q ss_pred cCc------cceeEEEEccCCCEE-EEEeCCCcEEEEeCC---CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcE
Q psy3640 408 GHS------QEISNCLFNFSNSMI-ASSSLDGTAKLWDVR---TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD-QTA 476 (616)
Q Consensus 408 ~~~------~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i 476 (616)
... ..+..++|+|+++++ ++...++.|.+|++. +...+..+..+...+..++|+|+|++|++++.+ +.+
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence 211 347789999999977 455568999999987 335566666666778999999999998888765 899
Q ss_pred EEEecC
Q psy3640 477 NLWTVG 482 (616)
Q Consensus 477 ~iwd~~ 482 (616)
.+|+++
T Consensus 311 ~v~~~d 316 (347)
T 3hfq_A 311 TLYARD 316 (347)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999654
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.1e-21 Score=214.07 Aligned_cols=326 Identities=9% Similarity=-0.001 Sum_probs=219.6
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec------eeeEEEcCCCCEEEEEeC---------CCcEEEEEC
Q psy3640 275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH------SAEVTFSPDQSTFCSCSM---------DHTARIFNT 339 (616)
Q Consensus 275 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~l~~~~~---------dg~i~i~d~ 339 (616)
+++|+ +++. ++..+.|++|++||+.+++....+..+ ...++|+||+++|++++. ++.|++||+
T Consensus 20 ~~~~s-~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWI-SGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEES-SSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEEC-CCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 67898 7775 555557999999999999988877765 557899999999998876 689999999
Q ss_pred CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc-------
Q psy3640 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE------- 412 (616)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 412 (616)
.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++......... ........+.++...
T Consensus 98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-------~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-------FNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-------CCCBTTTEEESSCCHHHHHHTT
T ss_pred CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-------cCCCcCCeEcccccceeeeecc
Confidence 9887621111 135688999999999999986 789999998632211000 000011112233222
Q ss_pred --eeEEEEccCCCEEEEEeCCC----------------------------------cEEEEeCCCCeEE---E-----Ee
Q psy3640 413 --ISNCLFNFSNSMIASSSLDG----------------------------------TAKLWDVRTMCCF---Y-----TL 448 (616)
Q Consensus 413 --i~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~ 448 (616)
...++|+|||+.|++++.|. .|++||+.+++.. . .+
T Consensus 169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 25899999999999988652 7889999887642 1 12
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEe----cCCceeeeeEE----eccCCCee--eEEEEEEcCCCCEEE
Q psy3640 449 KNHEDEVLDIAFDYSGSKLATASSDQ----TANLWT----VGGAVELLQTF----YGHSNEVS--KVLDIAFDYSGSKLA 514 (616)
Q Consensus 449 ~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd----~~~~~~~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~ 514 (616)
..+...+.+++|+||++++++....+ .|.+|| ..++... ... ..+..... ....+.|+|||+.++
T Consensus 249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccEECCCCCeEE
Confidence 35777899999999987777644332 488888 6554322 222 22222211 011568999999665
Q ss_pred E--EeCCC--cEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC-----CcEEEecCCc--Ce-eeeEec--
Q psy3640 515 T--ASSDQ--TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD-----TTCRLWSTES--GE-CIQVLK-- 580 (616)
Q Consensus 515 ~--~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~--~~-~~~~~~-- 580 (616)
. ...+| .|.+|++.++. ...+..+...+..+.++ +++.|+..+.+ +..++|.+.. +. ....+.
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 404 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH 404 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT
T ss_pred EEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc
Confidence 4 44555 46667776543 34555666678888888 88888777665 7889998764 42 123332
Q ss_pred --cCcccEEEEEEeeCCCEEEE-eeCC--CcEEEcccCCC
Q psy3640 581 --AHEDDVFSCGFNYNGDTIIT-ASKD--NTCCIWRSMNR 615 (616)
Q Consensus 581 --~h~~~V~~l~~s~~~~~l~t-~s~D--g~i~vW~~~~~ 615 (616)
+|...+..+.|+|++++++. ++.+ ..+.+|++.+.
T Consensus 405 ~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 405 LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 36667889999999987764 3333 46788887653
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.88 E-value=1.7e-20 Score=207.05 Aligned_cols=360 Identities=11% Similarity=0.086 Sum_probs=235.2
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCc-----EEEEEEcCCCCEE-EEECC---------CcE
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGCL-TGSYD---------RTC 252 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-----I~~l~fs~~~~ll-s~s~d---------~~I 252 (616)
....+++|+|||++++++ ||+|++||+.+++....+.+|... ...++||||++.+ .++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999986 999999999999988888887643 2347899999965 44443 677
Q ss_pred EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-eec-------------------
Q psy3640 253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RGH------------------- 312 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~------------------- 312 (616)
.+||+.+++.. .+..|...+...+|| |+|+.||.++ ++.|.+|++.+++..+.. .++
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 89999999864 466788899999999 8999999885 689999999888754421 121
Q ss_pred -eeeEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 313 -SAEVTFSPDQSTFCSCSMDHT-ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 313 -~~~v~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
...+.|+|||+.|+.++.|.. +.+|++...... ..+...+..+.+.+.|.. .....|++||+.....
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~---- 240 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSS---- 240 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCS----
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCC----
Confidence 123789999999998876544 777765321100 024455677777776642 1123688899863000
Q ss_pred ccccccccCCc--ceEEEe------cCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCe----EEE--Ee--ec
Q psy3640 391 YAESTYRASHK--PIHILT------GHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMC----CFY--TL--KN 450 (616)
Q Consensus 391 ~~~~~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~----~~~--~~--~~ 450 (616)
.. ....+. ++...+..++|+|+++.++..... ..|.+||+.+++ +.. .+ ..
T Consensus 241 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~ 311 (740)
T 4a5s_A 241 ---------VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS 311 (740)
T ss_dssp ---------SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred ---------CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence 21 122222 367778999999999976665432 369999998876 221 11 34
Q ss_pred CCCCEE-----EEEEcCCCCEEE-EEe-CCC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC--
Q psy3640 451 HEDEVL-----DIAFDYSGSKLA-TAS-SDQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-- 519 (616)
Q Consensus 451 ~~~~v~-----~l~~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-- 519 (616)
+...+. ..+|+|||+.++ ..+ .+| .|.+|+..++.. ..+...... +..+. .++++.++..+..
T Consensus 312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~---v~~~~-~~d~~~i~f~~~~~~ 385 (740)
T 4a5s_A 312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWE---VIGIE-ALTSDYLYYISNEYK 385 (740)
T ss_dssp SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSC---EEEEE-EECSSEEEEEESCGG
T ss_pred CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEE---EEEEE-EEeCCEEEEEEecCC
Confidence 554443 788999999877 555 344 577777765422 122222222 22222 1336665554443
Q ss_pred ---CcEEEEe--cCCceEEeEEeec----cccCEEEEEEecCCCEEEEEECC---CcEEEecCCcCeeeeEe
Q psy3640 520 ---QTAKLWT--VGGAVELLQTFYG----HSNEVSKVSFHPTGKLVLSGSQD---TTCRLWSTESGECIQVL 579 (616)
Q Consensus 520 ---g~i~vwd--~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~ 579 (616)
+...+|. +.+. .....+.. .........|||++++++..... ..+.+++..+++.+..+
T Consensus 386 ~~~~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 386 GMPGGRNLYKIQLIDY-TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp GCTTCBEEEEEETTEE-EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred CCCceeEEEEEECCCC-CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 3445554 4432 22222321 23578899999999987765543 46888888877665554
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.7e-20 Score=187.50 Aligned_cols=276 Identities=9% Similarity=0.001 Sum_probs=190.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-cCEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccc
Q psy3640 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-GPVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 316 v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
+++++++..+++++.++.|.+||..+++.+..+..+. ..+..++|+|+++.+++ +..++.|.+||+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~----------- 73 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD----------- 73 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-----------
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-----------
Confidence 3567788889999999999999999998888876543 25688999999986654 4568999999986
Q ss_pred cccccCCcceEEEecC------ccceeEEEEccCCCEEEEEeCC------------CcEEEEeCCCCe---EEEEeecCC
Q psy3640 394 STYRASHKPIHILTGH------SQEISNCLFNFSNSMIASSSLD------------GTAKLWDVRTMC---CFYTLKNHE 452 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~---~~~~~~~~~ 452 (616)
.......+... ...+..++|+|+++++++++.+ +.|.+||+.+++ .+..+. +.
T Consensus 74 -----t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~ 147 (349)
T 1jmx_B 74 -----TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP 147 (349)
T ss_dssp -----TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred -----CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence 44444444322 2337789999999999998865 899999998843 333343 34
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccC---------------------CCeeeEEEEEEcCCCC
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHS---------------------NEVSKVLDIAFDYSGS 511 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------~~~~~i~~~~~s~~~~ 511 (616)
..+.+++|+|+|+ +++++. .+.+||..++.... .+.... ........+++++++.
T Consensus 148 ~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 223 (349)
T 1jmx_B 148 RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTV-ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK 223 (349)
T ss_dssp SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEE-EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred CcccceeECCCCc-EEEccC--cEEEEeCCCCceec-cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence 4688999999999 665543 49999997764332 222111 0001234466665542
Q ss_pred EEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEEEec-CCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEE
Q psy3640 512 KLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP-TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSC 589 (616)
Q Consensus 512 ~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l 589 (616)
....... ...+..++..++......+..+...+..++|+| +|++++++ ++.|.+||+.+++.+..+..+ ..+.++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 300 (349)
T 1jmx_B 224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCV 300 (349)
T ss_dssp ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccce
Confidence 2110000 011122344333333333334667889999999 99999988 889999999999988887644 346789
Q ss_pred EEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 590 GFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 590 ~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+|+|++++|++++.++.|.+||+.+.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTT
T ss_pred EECCCCCEEEEecCCCeEEEEecccc
Confidence 99999999988889999999999764
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=5.8e-20 Score=183.57 Aligned_cols=264 Identities=11% Similarity=0.038 Sum_probs=196.3
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEee
Q psy3640 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYR 267 (616)
Q Consensus 191 ~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~ 267 (616)
+.++++++++++++++.+++|.+||..+++.+..+..+. ..+..++|+|+++.+ +...++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346788999999999999999999999999988887554 257899999999843 55578999999999999887776
Q ss_pred CCC------CcEEEEEEeCCCCCEEEEEECC------------CeEEEEeCCCcce---eEEeee--ceeeEEEcCCCCE
Q psy3640 268 GHQ------NVVYAVAFSEPYGDKILTGSFD------------KTLKLWASAKEEC---IQTYRG--HSAEVTFSPDQST 324 (616)
Q Consensus 268 ~h~------~~V~~l~~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~---~~~~~~--~~~~v~~~~~~~~ 324 (616)
.+. ..+..++|+ |+++++++++.+ +.|.+||+.+++. +..+.. ....++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence 432 236789999 889999988865 8999999988543 333332 234567999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeecCCc------------------------CEEEEEEcCCCCE-----------EEE
Q psy3640 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTG------------------------PVISLQFSSDRNM-----------LIT 369 (616)
Q Consensus 325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~~-----------l~~ 369 (616)
+++++ +.|.+||..+++....+..+.. ....+++++++.. +..
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 55553 4499999999988877654320 2344666654321 112
Q ss_pred EECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q psy3640 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL 448 (616)
Q Consensus 370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 448 (616)
...++.+++|++. .+...+..++++| ++++++++ ++.|.+||+.+++.+..+
T Consensus 239 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~ 291 (349)
T 1jmx_B 239 DLKTGKTHTQEFA-------------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA 291 (349)
T ss_dssp ETTTCCEEEEEEE-------------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred eccCCcEEecccc-------------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence 2233444444432 2445677899999 99999888 789999999999988777
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640 449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 449 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 486 (616)
.. ...+.+++|+|++++|++++.++.|.+||..+...
T Consensus 292 ~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 292 NL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp EC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred cC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 63 34577999999999999888899999999987643
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=8.2e-21 Score=203.90 Aligned_cols=267 Identities=8% Similarity=0.039 Sum_probs=190.4
Q ss_pred eeEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeecCC-cCEEEEEEcCCCCEEEEEEC---CCcEEEEecccccCCc
Q psy3640 314 AEVTFSPDQSTFCSCSM-DHTARIFNTNSGQEMHTLKAHT-GPVISLQFSSDRNMLITGSF---DSSIVVWDIQYQFGTR 388 (616)
Q Consensus 314 ~~v~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~ 388 (616)
..++++|||+.|+.++. +|++.+|++.+++. ..+..+. ..+.+++|+|| +.+++++. +...++|.+....
T Consensus 25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~--- 99 (582)
T 3o4h_A 25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR--- 99 (582)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS---
T ss_pred heeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC---
Confidence 34567777777776665 77788888755544 4444454 68899999999 77777765 4566777665200
Q ss_pred ccccccccccCCcceEEEecCccceeEEEEccCCCE-EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEE
Q psy3640 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL 467 (616)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 467 (616)
......+... ......+|+|+++. +++...++.+.+||+.+++.......+. .+++|+|||+++
T Consensus 100 -----------~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~l 164 (582)
T 3o4h_A 100 -----------PGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLI 164 (582)
T ss_dssp -----------TTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEE
T ss_pred -----------CCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEE
Confidence 1111122222 22335678888753 3444445566699999987665554333 789999999999
Q ss_pred EEEeCC----CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceEEeEEeeccc
Q psy3640 468 ATASSD----QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGAVELLQTFYGHS 541 (616)
Q Consensus 468 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~ 541 (616)
++++.+ +.|++||+.++... .+..+. ..+..++|+|||+.|+++..++ .|++||+.++... .+.+|.
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~ 237 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGGLR--VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPS 237 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCCCE--EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSC
T ss_pred EEEEEcCCCCeEEEEEcCCCCCce--EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCC
Confidence 988777 78999998775432 333333 3467899999999999888888 8999999886443 667777
Q ss_pred cCEEEEE--------EecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCc---EEEc
Q psy3640 542 NEVSKVS--------FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT---CCIW 610 (616)
Q Consensus 542 ~~v~~l~--------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~---i~vW 610 (616)
..+..++ |+|||.++++++.|+.+++|++ |+... .+.+.|.+++|+ +++++++++.+.+ +.+|
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~ 311 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL 311 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence 7777777 9999999999999999999999 76655 344678999999 9999999888744 7777
Q ss_pred ccC
Q psy3640 611 RSM 613 (616)
Q Consensus 611 ~~~ 613 (616)
+..
T Consensus 312 d~~ 314 (582)
T 3o4h_A 312 PSG 314 (582)
T ss_dssp TTC
T ss_pred cCC
Confidence 654
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.1e-19 Score=180.60 Aligned_cols=276 Identities=11% Similarity=0.094 Sum_probs=184.3
Q ss_pred CEEEEEe----CCCcEEEEEC--CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEecccccCCccccc
Q psy3640 323 STFCSCS----MDHTARIFNT--NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQYQFGTRNAYA 392 (616)
Q Consensus 323 ~~l~~~~----~dg~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~ 392 (616)
.++++|+ .++.|.+|++ .+++.......+...+..++|+|+|++|++++.+ +.|.+|++.....
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g------ 87 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG------ 87 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT------
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC------
Confidence 4455554 3467888865 4565433322266777889999999999999886 7999999863100
Q ss_pred ccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEe------ec--------CCCCEEE
Q psy3640 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTL------KN--------HEDEVLD 457 (616)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~ 457 (616)
....+.....+......+++ +++.+++++ .++.+.+|++.....+..+ .+ +...+.+
T Consensus 88 ------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (361)
T 3scy_A 88 ------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC 159 (361)
T ss_dssp ------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred ------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence 11222333334455666666 788777766 5789999998754322111 11 1234688
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEecCCcee------eeeE---EeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q psy3640 458 IAFDYSGSKLATAS-SDQTANLWTVGGAVE------LLQT---FYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWT 526 (616)
Q Consensus 458 l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd 526 (616)
++|+|+|+++++++ .++.+.+|++..... .... .............++|+|+|+++++++ .++.|.+|+
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~ 239 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR 239 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence 99999999776655 478999999875432 1110 011111123356799999999888877 689999999
Q ss_pred cCCceE-EeEEee---ccccCEEEEEEecCCCEEEEEECC--CcEEEecCC--cCe--eeeEeccCcccEEEEEEeeCCC
Q psy3640 527 VGGAVE-LLQTFY---GHSNEVSKVSFHPTGKLVLSGSQD--TTCRLWSTE--SGE--CIQVLKAHEDDVFSCGFNYNGD 596 (616)
Q Consensus 527 ~~~~~~-~~~~~~---~h~~~v~~l~~spdg~~l~s~s~d--g~i~iwd~~--~~~--~~~~~~~h~~~V~~l~~s~~~~ 596 (616)
+.++.. ...... .+......++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+.+++|+|||+
T Consensus 240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~ 318 (361)
T 3scy_A 240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGK 318 (361)
T ss_dssp EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSC
T ss_pred ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCC
Confidence 975422 222222 233457899999999998777654 899999985 454 4455554 45678999999999
Q ss_pred EEEEee-CCCcEEEcccC
Q psy3640 597 TIITAS-KDNTCCIWRSM 613 (616)
Q Consensus 597 ~l~t~s-~Dg~i~vW~~~ 613 (616)
+|++++ .++.|.+|++.
T Consensus 319 ~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEE
Confidence 988887 67999997664
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=3.9e-18 Score=171.39 Aligned_cols=304 Identities=12% Similarity=0.076 Sum_probs=196.6
Q ss_pred CEEEEEE----CCCeEEEEeC--CCcceeEEee---eceeeEEEcCCCCEEEEEeCC----CcEEEEECCC--Cce--eE
Q psy3640 284 DKILTGS----FDKTLKLWAS--AKEECIQTYR---GHSAEVTFSPDQSTFCSCSMD----HTARIFNTNS--GQE--MH 346 (616)
Q Consensus 284 ~~l~s~s----~dg~i~iwd~--~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~d----g~i~i~d~~~--~~~--~~ 346 (616)
.+++.|+ .++.|.+|++ .+++...... .....++|+|++++|++++.+ +.+.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455554 3567888865 4554332221 222447999999999999875 7999998865 432 33
Q ss_pred EeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640 347 TLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI 425 (616)
Q Consensus 347 ~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 425 (616)
....+......+++ +++++++++ .++.+.+|++............... ..........+...+.+++|+|+++++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~spdg~~l 169 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF--KGSGPDKERQTMPHLHCVRITPDGKYL 169 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC--CCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc--cCCCCCccccCCCcceEEEECCCCCEE
Confidence 44445566778888 788777776 5789999998632211100000000 000000001123345789999999977
Q ss_pred EEEe-CCCcEEEEeCCCCe-------E------EEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCcee-eee
Q psy3640 426 ASSS-LDGTAKLWDVRTMC-------C------FYTLKNHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVE-LLQ 489 (616)
Q Consensus 426 ~~~~-~dg~i~iwd~~~~~-------~------~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~ 489 (616)
++++ .++.+.+|++.... . ..........+..++|+|+|+++++++ .++.|.+|++.++.. ...
T Consensus 170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~ 249 (361)
T 3scy_A 170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ 249 (361)
T ss_dssp EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence 6655 47899999876433 1 111223456688999999999888777 689999999975432 223
Q ss_pred EEeccCCCeeeEEEEEEcCCCCEEEEEeCC--CcEEEEecC--Cc-eEEeEEeeccccCEEEEEEecCCCEEEEEE-CCC
Q psy3640 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSD--QTAKLWTVG--GA-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDT 563 (616)
Q Consensus 490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~--~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg 563 (616)
..............++|+|+|++|+++..+ +.|.+|++. ++ ...+..+.. ...+..++|+|||++|++++ .++
T Consensus 250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~ 328 (361)
T 3scy_A 250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN 328 (361)
T ss_dssp EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence 333333333445789999999999777665 899999995 22 234444444 55788999999999998887 678
Q ss_pred cEEEe--cCCcCeeeeEe-ccCcccEEEEEEe
Q psy3640 564 TCRLW--STESGECIQVL-KAHEDDVFSCGFN 592 (616)
Q Consensus 564 ~i~iw--d~~~~~~~~~~-~~h~~~V~~l~~s 592 (616)
.|.+| |.++|+..... ..+...+.+++|.
T Consensus 329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 89995 55677765443 2344568888886
No 160
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=1.5e-19 Score=199.49 Aligned_cols=355 Identities=9% Similarity=0.063 Sum_probs=229.2
Q ss_pred CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc-----EEEEEEeCCCCCEEEEEECC---------CeE
Q psy3640 230 NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGDKILTGSFD---------KTL 295 (616)
Q Consensus 230 ~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d---------g~i 295 (616)
....+++|+||+.++..+ |++|++||+.+++....+.+|... ...++|+ |++++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccceEE
Confidence 345688999999988666 999999999999988888877643 2347889 899999999876 566
Q ss_pred EEEeCCCcceeEEe--eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCE-----------------
Q psy3640 296 KLWASAKEECIQTY--RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPV----------------- 355 (616)
Q Consensus 296 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v----------------- 355 (616)
.+||+.+++..... .+....++|+|||+.|+.+. ++.|++|++.+++..... .++...+
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 79999998765422 23345668999999999885 689999999887754322 2232222
Q ss_pred EEEEEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcE
Q psy3640 356 ISLQFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434 (616)
Q Consensus 356 ~~l~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 434 (616)
.++.|+|||+.|+.++.|.+ +.+|++..... .. .+...+..+.+...|.. .....+
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------~~------~~~~~~~~~~yp~~G~~----~~~~~l 230 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------ES------LQYPKTVRVPYPKAGAV----NPTVKF 230 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------TT------CSSCEEEEEECCBTTSC----CCEEEE
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------CC------CCCCcceeecCCCCcCc----CCeeEE
Confidence 35899999999998876554 88888752210 00 23334455566555532 112368
Q ss_pred EEEeCCC---Ce--EEEEee------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCCce----ee-eeEE--e
Q psy3640 435 KLWDVRT---MC--CFYTLK------NHEDEVLDIAFDYSGSKLATASS----DQTANLWTVGGAV----EL-LQTF--Y 492 (616)
Q Consensus 435 ~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~-~~~~--~ 492 (616)
++||+.+ +. ....+. ++...+..++|+|+|+.++.... +..|.+||+.++. .. ...+ .
T Consensus 231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~ 310 (740)
T 4a5s_A 231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM 310 (740)
T ss_dssp EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence 9999998 72 222333 26778999999999997665533 2369999987764 11 1111 2
Q ss_pred ccCCCee--eEEEEEEcCCCCEEE-EEeC-C--CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC----
Q psy3640 493 GHSNEVS--KVLDIAFDYSGSKLA-TASS-D--QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD---- 562 (616)
Q Consensus 493 ~~~~~~~--~i~~~~~s~~~~~l~-~~~~-d--g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d---- 562 (616)
.+..-.. ......|+|||+.++ ..+. + ..|.+|+..++. . ..+......+..+. .+|++.|+..+..
T Consensus 311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-C-TFITKGTWEVIGIE-ALTSDYLYYISNEYKGM 387 (740)
T ss_dssp CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-C-EESCCSSSCEEEEE-EECSSEEEEEESCGGGC
T ss_pred cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-e-EecccCCEEEEEEE-EEeCCEEEEEEecCCCC
Confidence 2221111 022468999999877 6654 3 457788887642 2 23444455666654 3557666654443
Q ss_pred -Cc--EEEecCCcCeeeeEec----cCcccEEEEEEeeCCCEEEEeeCC---CcEEEcccC
Q psy3640 563 -TT--CRLWSTESGECIQVLK----AHEDDVFSCGFNYNGDTIITASKD---NTCCIWRSM 613 (616)
Q Consensus 563 -g~--i~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~t~s~D---g~i~vW~~~ 613 (616)
+. |...++..+.....+. +....+....|||++++++..... ..+.+++..
T Consensus 388 ~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 388 PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 33 4444554444332333 223568889999999977655433 346666654
No 161
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=2.8e-19 Score=181.57 Aligned_cols=296 Identities=13% Similarity=0.071 Sum_probs=205.8
Q ss_pred EEEeCCCCceEEEeeCCCCcEEE-----EEEeCCCCCEEEEEEC-CC--eEEEEeCCCcceeEEeeecee---eEEEcCC
Q psy3640 253 KLWDIKSGHEICTYRGHQNVVYA-----VAFSEPYGDKILTGSF-DK--TLKLWASAKEECIQTYRGHSA---EVTFSPD 321 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h~~~V~~-----l~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~---~v~~~~~ 321 (616)
..+|..++..+..+..|...... .+|+ |+++.|+.++. ++ .|.+||+.+++......++.. ..+|+|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 34577888888888888877766 7899 89999999887 66 488889999887776665543 3589999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEE--EcCCCCEEEEEE----------------------CCCcEE
Q psy3640 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ--FSSDRNMLITGS----------------------FDSSIV 377 (616)
Q Consensus 322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~~g~----------------------~dg~i~ 377 (616)
++.|+.++.++.+++||+.+++.......+...+.... ++|++..++... .+..|.
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 99999999999999999999988776666665554444 489999887432 346788
Q ss_pred EEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCeEEEEeec
Q psy3640 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLD------GTAKLWDVRTMCCFYTLKN 450 (616)
Q Consensus 378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~ 450 (616)
+||+. .. ....+..+...+..+.|+| +++.++....+ ..|.++|...+.. ..+..
T Consensus 172 ~~d~~----------------~g-~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~ 233 (388)
T 3pe7_A 172 RVDLK----------------TG-ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT 233 (388)
T ss_dssp EEETT----------------TC-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC
T ss_pred EEECC----------------CC-ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee
Confidence 88885 33 3344445666788999999 99988887753 3788888776543 33333
Q ss_pred CC--CCEEEEEEcCCCCEEEEEeC-CC----cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640 451 HE--DEVLDIAFDYSGSKLATASS-DQ----TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523 (616)
Q Consensus 451 ~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 523 (616)
+. ..+...+|+|+|+.|+..+. ++ .|.+||+.++....
T Consensus 234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~----------------------------------- 278 (388)
T 3pe7_A 234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ----------------------------------- 278 (388)
T ss_dssp CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-----------------------------------
T ss_pred CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-----------------------------------
Confidence 33 35778899999987765443 22 27788876542110
Q ss_pred EEecCCceEEeEEeecccc---CEEEEEEecCCCEEEEE---------ECCCcEEEecCCcCeeeeEeccCcc-------
Q psy3640 524 LWTVGGAVELLQTFYGHSN---EVSKVSFHPTGKLVLSG---------SQDTTCRLWSTESGECIQVLKAHED------- 584 (616)
Q Consensus 524 vwd~~~~~~~~~~~~~h~~---~v~~l~~spdg~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~h~~------- 584 (616)
+..+.++.. ....++|+|||+.|+.. ..+..|++||+.+++.. .+..|..
T Consensus 279 ----------l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~ 347 (388)
T 3pe7_A 279 ----------LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEG 347 (388)
T ss_dssp ----------EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTT
T ss_pred ----------EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccccccc
Confidence 000000000 00112689999988754 45668999999988754 4544554
Q ss_pred ----cEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640 585 ----DVFSCGFNYNGDTIITAS-KDNTCCIWRSM 613 (616)
Q Consensus 585 ----~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~ 613 (616)
.+.+++|+|||+.|+.++ .+|...+|.+.
T Consensus 348 ~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 348 DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 578889999999887665 57877787654
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.85 E-value=5.7e-19 Score=177.68 Aligned_cols=273 Identities=8% Similarity=0.052 Sum_probs=180.8
Q ss_pred EEEEeCC--CcEEEEEC--CCCceeEE--ee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccc
Q psy3640 325 FCSCSMD--HTARIFNT--NSGQEMHT--LK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYR 397 (616)
Q Consensus 325 l~~~~~d--g~i~i~d~--~~~~~~~~--~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 397 (616)
+++|+.. +.|.+|++ .+++.... .. .....+..++|+|+|++|++++.+ .|.+|++..
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~-------------- 69 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKS-------------- 69 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEE--------------
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECC--------------
Confidence 4555543 45777654 45554222 11 233467889999999999999887 999999851
Q ss_pred cCCcceEEEec-CccceeEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-CCeEEEEee----cCCCCEE
Q psy3640 398 ASHKPIHILTG-HSQEISNCLFNFSNSM--IASSS-------------LDGTAKLWDVR-TMCCFYTLK----NHEDEVL 456 (616)
Q Consensus 398 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~ 456 (616)
.......... ..+....++++|+++. ++++. .+|.+.+|++. .++....+. .+...+.
T Consensus 70 -~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 70 -PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp -TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred -CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 1111111110 0123456888999994 44543 68899999997 465544443 2456799
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecC-Cceee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecC--Cc
Q psy3640 457 DIAFDYSGSKLATASS-DQTANLWTVG-GAVEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVG--GA 530 (616)
Q Consensus 457 ~l~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~--~~ 530 (616)
+++|+|+|++++++.. ++.|++|++. ++... ....... ........++|+|+|+++++++. ++.|.+|++. ++
T Consensus 149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g 227 (365)
T 1jof_A 149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence 9999999998887764 6799999997 44321 2222111 11234678999999999988775 7899999875 33
Q ss_pred eEE--eEEee-------cccc------CEEEEE-EecCCCEEEEEECCC------cEEEecCC-cCeeee---EeccCcc
Q psy3640 531 VEL--LQTFY-------GHSN------EVSKVS-FHPTGKLVLSGSQDT------TCRLWSTE-SGECIQ---VLKAHED 584 (616)
Q Consensus 531 ~~~--~~~~~-------~h~~------~v~~l~-~spdg~~l~s~s~dg------~i~iwd~~-~~~~~~---~~~~h~~ 584 (616)
... ...+. +|.. .+..++ |+|||++|++++.+. .|.+|++. +++... ....+..
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~ 307 (365)
T 1jof_A 228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS 307 (365)
T ss_dssp CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC
Confidence 211 11121 1222 588999 999999988765432 89999986 666543 2333444
Q ss_pred cEEEEEEee---CCCEEEEeeCC-CcEEEcccCC
Q psy3640 585 DVFSCGFNY---NGDTIITASKD-NTCCIWRSMN 614 (616)
Q Consensus 585 ~V~~l~~s~---~~~~l~t~s~D-g~i~vW~~~~ 614 (616)
.+..++|+| ||++|++++.+ +.|.+|++..
T Consensus 308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred CcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 567889999 89999998875 8999998864
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=2.3e-19 Score=182.21 Aligned_cols=286 Identities=14% Similarity=0.102 Sum_probs=199.4
Q ss_pred heecccCCcceEE-----EEECCCCCEEEEEEC-CC--cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCC
Q psy3640 180 FKMLKSHLLPLTN-----ITFDKFGTRCLTGSY-DR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDR 250 (616)
Q Consensus 180 ~~~l~~h~~~i~~-----v~~s~~g~~lasgs~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~ 250 (616)
...+..|...... .+|||||++||.++. +| .|.+||+.+++......++...+..++|+||++.| .++.++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 4556667665655 889999999999987 66 48889999998887777777777678899999855 777788
Q ss_pred cEEEEeCCCCceEEEeeCCCCcEEEEEEe-CCCCCEEEEEE----------------------CCCeEEEEeCCCcceeE
Q psy3640 251 TCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGDKILTGS----------------------FDKTLKLWASAKEECIQ 307 (616)
Q Consensus 251 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~ 307 (616)
.|++||+.+++....+..+...+....|. .+++..++... .+..|.+||+.+++...
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV 182 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence 99999999999887777777766555441 37888887532 34689999999987655
Q ss_pred Eeeec--eeeEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeecCC--cCEEEEEEcCCCCEEEEEEC-CC-
Q psy3640 308 TYRGH--SAEVTFSP-DQSTFCSCSMD------HTARIFNTNSGQEMHTLKAHT--GPVISLQFSSDRNMLITGSF-DS- 374 (616)
Q Consensus 308 ~~~~~--~~~v~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~g~~-dg- 374 (616)
..... ...++|+| +++.++....+ ..|.++|...+.. ..+..+. ..+...+|+|||+.|+..+. ++
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 44332 34568999 99999887754 3788888775543 4444344 35778999999997765443 22
Q ss_pred ---cEEEEecccccCCcccccccccccCCcceEEEecCc---cceeEEEEccCCCEEEEE---------eCCCcEEEEeC
Q psy3640 375 ---SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS---QEISNCLFNFSNSMIASS---------SLDGTAKLWDV 439 (616)
Q Consensus 375 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~---------~~dg~i~iwd~ 439 (616)
.|++||+.... ...+....++. .......|+|+|+.++.. ..+..|++||+
T Consensus 262 ~~~~l~~~d~~~g~--------------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~ 327 (388)
T 3pe7_A 262 PDRFIYSADPETLE--------------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM 327 (388)
T ss_dssp CCEEEEEECTTTCC--------------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred CcceEEEEecCCCc--------------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence 39999986321 11121222110 001223689999887754 44568999999
Q ss_pred CCCeEEEEeecCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q psy3640 440 RTMCCFYTLKNHED-----------EVLDIAFDYSGSKLATAS-SDQTANLWTV 481 (616)
Q Consensus 440 ~~~~~~~~~~~~~~-----------~v~~l~~~~~~~~l~~~~-~dg~i~iwd~ 481 (616)
.+++. ..+..+.. .+.+++|+|+|+.|+..+ .+|...+|.+
T Consensus 328 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 328 KNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 98865 34444554 578889999999887665 4666666654
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=8.7e-20 Score=187.28 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=154.5
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEE----E
Q psy3640 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA----S 427 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~ 427 (616)
...+..+++++++.++++++.++ +++|+.....................+. ....+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEec
Confidence 44678899999999999999887 8998875321110000000000000111 1234567899999999999999 7
Q ss_pred EeCCCcEEEEeCCCC--------e---EEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeEEeccC
Q psy3640 428 SSLDGTAKLWDVRTM--------C---CFYTLKNHEDEVLDIAFDYS-GSKLATASSDQTANLWTVGGAVELLQTFYGHS 495 (616)
Q Consensus 428 ~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 495 (616)
|+.|+.|++||++++ + ....+.+|...|.+++|+|+ +.+|++++.||+|++||+.+.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~----------- 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET----------- 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-----------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-----------
Confidence 888999999998654 1 24455568888999999987 778888888888888888653
Q ss_pred CCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee
Q psy3640 496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575 (616)
Q Consensus 496 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 575 (616)
.......+|...|++++|+|+|++|++|+.||.|++||++ ++.
T Consensus 183 ------------------------------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~ 225 (434)
T 2oit_A 183 ------------------------------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE 225 (434)
T ss_dssp ------------------------------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred ------------------------------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence 1222334688899999999999999999999999999998 666
Q ss_pred eeEeccC-------cccEEEEEEeeCCCEEEE-eeCCCc------EEEcccCCC
Q psy3640 576 IQVLKAH-------EDDVFSCGFNYNGDTIIT-ASKDNT------CCIWRSMNR 615 (616)
Q Consensus 576 ~~~~~~h-------~~~V~~l~~s~~~~~l~t-~s~Dg~------i~vW~~~~~ 615 (616)
...+..| ...|.+++|++++.++++ ++.||. +++|++...
T Consensus 226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 6555443 337999999999887765 334433 889998753
No 165
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.84 E-value=2.4e-18 Score=172.29 Aligned_cols=293 Identities=8% Similarity=0.041 Sum_probs=207.4
Q ss_pred CCCCEEEEEE------CCCeEEEEeCCCcceeEEeeece-eeEEEcCCCCEEEEEeC----------CCcEEEEECCCCc
Q psy3640 281 PYGDKILTGS------FDKTLKLWASAKEECIQTYRGHS-AEVTFSPDQSTFCSCSM----------DHTARIFNTNSGQ 343 (616)
Q Consensus 281 ~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~~~----------dg~i~i~d~~~~~ 343 (616)
++++++++.. .|+.|.+||..+++.+.++.... ..++++|++++++++.. ++.|.+||..+++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 4556666554 36799999999998887775332 27899999999998863 5679999999999
Q ss_pred eeEEeecC------CcCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCcccccccccccCCcceEE-EecCcccee
Q psy3640 344 EMHTLKAH------TGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI-LTGHSQEIS 414 (616)
Q Consensus 344 ~~~~~~~~------~~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 414 (616)
.+..+... ......++++|+|++|+++.. ++.|.+||+. ..+.+.. +.. . ...
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~----------------~~~~~~~~i~~-~-~~~ 154 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA----------------KGDYVEDVTAA-A-GCW 154 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT----------------TTEEEEEEGGG-T-TEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC----------------CCcEEEEEecC-C-Ccc
Confidence 88887643 234567999999999998874 5899999997 4444333 221 1 112
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEeCCC-CeEEEEe------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640 415 NCLFNFSN-SMIASSSLDGTAKLWDVRT-MCCFYTL------KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 415 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 486 (616)
.+.+.|++ ..+++.+.||.+.+|+... ++..... .....++ .+.+++++..++..+.++.+.++|+.....
T Consensus 155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~ 233 (361)
T 2oiz_A 155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV 233 (361)
T ss_dssp EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC
T ss_pred eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc
Confidence 24456654 6778888899999998765 5443221 1122221 233456777778788899999999865422
Q ss_pred e-eeEEeccC------C-CeeeEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640 487 L-LQTFYGHS------N-EVSKVLDIAFDYSGSKLATASS-----------DQTAKLWTVGGAVELLQTFYGHSNEVSKV 547 (616)
Q Consensus 487 ~-~~~~~~~~------~-~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l 547 (616)
. ...+.... . .......++++|+++.++++.. .+.|.+||+.+. +.+..+..+. +..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~i 310 (361)
T 2oiz_A 234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSM 310 (361)
T ss_dssp EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEE
T ss_pred eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEE
Confidence 1 11111100 0 0011112689999888887654 358999999985 6667777666 9999
Q ss_pred EEecCCCEEEEEECCCcEEEecCCcC--eeeeEeccCcccEEEEEEeeCCC
Q psy3640 548 SFHPTGKLVLSGSQDTTCRLWSTESG--ECIQVLKAHEDDVFSCGFNYNGD 596 (616)
Q Consensus 548 ~~spdg~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~V~~l~~s~~~~ 596 (616)
+|+|||++|++++. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999998886 99999999999 99999876777788999999985
No 166
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=2.2e-18 Score=176.84 Aligned_cols=257 Identities=15% Similarity=0.143 Sum_probs=170.8
Q ss_pred CCcCEEEEEEcCCCCEEE----EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEE
Q psy3640 351 HTGPVISLQFSSDRNMLI----TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMI 425 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~----~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 425 (616)
+...|.+++|+|++++|+ +|+.|+.|++||+......... ..........+.+|...|.+++|+|+ +.++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 165 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ-----QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV 165 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS-----SCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC-----CcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence 567899999999999999 7888999999998743100000 00011124455678999999999998 8899
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCC----CeeeE
Q psy3640 426 ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSN----EVSKV 501 (616)
Q Consensus 426 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i 501 (616)
++++.||.|++||++++........|...|.+++|+|+|++|++++.||.|++||.+. .....+..+.. ....+
T Consensus 166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEE
T ss_pred EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeE
Confidence 9999999999999999987777777889999999999999999999999999999983 22223332222 23478
Q ss_pred EEEEEcCCCCEEEEEe-CCC------cEEEEecCCce----EEeEEee-------ccccCEEEEEEecCCCEEEEEEC-C
Q psy3640 502 LDIAFDYSGSKLATAS-SDQ------TAKLWTVGGAV----ELLQTFY-------GHSNEVSKVSFHPTGKLVLSGSQ-D 562 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~-~dg------~i~vwd~~~~~----~~~~~~~-------~h~~~v~~l~~spdg~~l~s~s~-d 562 (616)
.+++|++++.++++.+ .+| .+++|++.... .....+. +...+-..+.+-++.+++++++. .
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred EEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence 9999999888876543 343 38999987531 2222222 12223333444477777766654 3
Q ss_pred CcEEEecCCcC--ee-ee--------Eec----cCcccEEEEEEe---------------eCCCEEEEeeCCCcEEEccc
Q psy3640 563 TTCRLWSTESG--EC-IQ--------VLK----AHEDDVFSCGFN---------------YNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 563 g~i~iwd~~~~--~~-~~--------~~~----~h~~~V~~l~~s---------------~~~~~l~t~s~Dg~i~vW~~ 612 (616)
+.|.|...... .. .. .++ ........+++. |--..|..-+.||.+..|.+
T Consensus 324 ~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~ 403 (434)
T 2oit_A 324 TEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM 403 (434)
T ss_dssp SBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence 33555543221 00 00 110 011112233331 12357888999999999987
Q ss_pred CC
Q psy3640 613 MN 614 (616)
Q Consensus 613 ~~ 614 (616)
-+
T Consensus 404 ~~ 405 (434)
T 2oit_A 404 IN 405 (434)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 167
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.83 E-value=8.1e-18 Score=168.41 Aligned_cols=267 Identities=12% Similarity=0.050 Sum_probs=193.2
Q ss_pred CCCCEEEEEE------CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCC
Q psy3640 197 KFGTRCLTGS------YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKS 259 (616)
Q Consensus 197 ~~g~~lasgs------~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~ 259 (616)
++++++.+.. .|+.|.+||..+++.+..+..+..+ .++|+||++++ ++. .++.|.+||..+
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 3667776654 3679999999999999888877666 89999999966 443 367899999999
Q ss_pred CceEEEeeCC------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEE-eeece-eeEEEcCCC-CEEEEE
Q psy3640 260 GHEICTYRGH------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQT-YRGHS-AEVTFSPDQ-STFCSC 328 (616)
Q Consensus 260 ~~~~~~~~~h------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~-~~v~~~~~~-~~l~~~ 328 (616)
++.+..+... ......++++ |++++|+++.. +++|.+||+.+++.+.. +.... ..+.+.|++ ..+++.
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence 9988887632 3456788999 88999998874 58999999999988877 54322 225567765 678888
Q ss_pred eCCCcEEEEECCC-CceeEEe------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640 329 SMDHTARIFNTNS-GQEMHTL------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401 (616)
Q Consensus 329 ~~dg~i~i~d~~~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 401 (616)
+.||.+.+|+... ++..... .....++ .+.+++++..++..+.++.+.++|+.... ..
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~--------------~~ 234 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE--------------VK 234 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS--------------CE
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC--------------ce
Confidence 9999999999865 5544221 1222222 23345677777778889999999985211 00
Q ss_pred ceEEEec----------CccceeEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640 402 PIHILTG----------HSQEISNCLFNFSNSMIASSSL-----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460 (616)
Q Consensus 402 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 460 (616)
....+.. .......++++++++.++++.. .+.|.+||+.+++.+.++..+. +.+++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~ 312 (361)
T 2oiz_A 235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI 312 (361)
T ss_dssp EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE
T ss_pred ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE
Confidence 0011000 0011223688999888777653 3479999999999999998776 899999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 461 DYSGSKLATASSDQTANLWTVGGA 484 (616)
Q Consensus 461 ~~~~~~l~~~~~dg~i~iwd~~~~ 484 (616)
+|+|++|++++. +.|.+||..+.
T Consensus 313 spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 313 DQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCCCCEEEEeCC-CeEEEEECCCC
Confidence 999999998876 89999998775
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.81 E-value=9e-19 Score=178.25 Aligned_cols=312 Identities=12% Similarity=0.027 Sum_probs=210.8
Q ss_pred EEEeCCCCceEEEeeCCCCc-----EEEEEEeCCCCCEEEEEECC---CeEEEEeCCCcceeEEeeecee---eEEEcCC
Q psy3640 253 KLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGDKILTGSFD---KTLKLWASAKEECIQTYRGHSA---EVTFSPD 321 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~ 321 (616)
..+|..+++.+..+..+... +..++|+ |++++|+..... ..|.+||+.+++......+... .+.|+|+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 34577888877777665443 6778899 889998877653 3788889988876544433322 2579999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK 401 (616)
Q Consensus 322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 401 (616)
++.|+.++.++.|++||+.+++.......+.. |+++|+.|+..+.+....+|..
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~-------------------- 145 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL-------------------- 145 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE--------------------
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc--------------------
Confidence 99999999999999999998876655554433 5666766766555544444431
Q ss_pred ceEEEecCccceeEEEEccCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCC--
Q psy3640 402 PIHILTGHSQEISNCLFNFSNSMIASS-----SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY-SGSKLATASSD-- 473 (616)
Q Consensus 402 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d-- 473 (616)
.+.++|+++.++.. ..+..|.+||+.+++..... .+...+..+.|+| ++..++..+.+
T Consensus 146 -------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (396)
T 3c5m_A 146 -------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH 211 (396)
T ss_dssp -------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS
T ss_pred -------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC
Confidence 12345666665543 34568999999988765444 4667899999999 78877776554
Q ss_pred ----CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceEEeEEeeccccCE
Q psy3640 474 ----QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAVELLQTFYGHSNEV 544 (616)
Q Consensus 474 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~h~~~v 544 (616)
..|.+|++.+... ..+.. ......+..++|+|+|++|+.++.+ +.|.+||+.++.... .. ... ..
T Consensus 212 ~~~~~~l~~~d~~~~~~--~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~-~~~-~~ 285 (396)
T 3c5m_A 212 DLVDARMWLVNEDGSNV--RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VM-VMP-PC 285 (396)
T ss_dssp SSCSCCCEEEETTSCCC--EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EE-ECC-SE
T ss_pred CCCCceEEEEECCCCce--eEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-ee-eCC-CC
Confidence 3588888765421 11111 1113357788999999988777554 449999997753222 11 111 23
Q ss_pred EEEEEec-CCCEEEEEE----------------CCCcEEEecCCcCeeeeEeccCcc-----------cEEEEEEeeCCC
Q psy3640 545 SKVSFHP-TGKLVLSGS----------------QDTTCRLWSTESGECIQVLKAHED-----------DVFSCGFNYNGD 596 (616)
Q Consensus 545 ~~l~~sp-dg~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~ 596 (616)
. +.|+| ||+++++++ .++.|++||+.+++.. .+..+.. .+..++|+|||+
T Consensus 286 ~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 363 (396)
T 3c5m_A 286 S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD 363 (396)
T ss_dssp E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC
Confidence 3 89999 999888765 3478999999888754 4444443 256678999999
Q ss_pred EEEEeeC-CCcEEEcccC
Q psy3640 597 TIITASK-DNTCCIWRSM 613 (616)
Q Consensus 597 ~l~t~s~-Dg~i~vW~~~ 613 (616)
.|+.++. ++...+|.+.
T Consensus 364 ~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 364 GVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEEECTTSSCEEEEEE
T ss_pred eEEEEecCCCCceEEEEE
Confidence 8887764 5666666543
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=5.8e-17 Score=162.96 Aligned_cols=269 Identities=7% Similarity=0.057 Sum_probs=180.7
Q ss_pred EEEEECC--CcEEEEeC--CCCceEE--Eee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC-CcceeEEee----
Q psy3640 243 CLTGSYD--RTCKLWDI--KSGHEIC--TYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEECIQTYR---- 310 (616)
Q Consensus 243 lls~s~d--~~I~iwd~--~~~~~~~--~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~---- 310 (616)
+++|+.. +.|.+|++ .+++... ... .....+..++|+ |+++++++++.+ .|.+|++. +++......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 3455543 56877765 5665432 221 234467889999 889999999988 99999997 776544322
Q ss_pred eceeeEEEcCCCCE--EEEEe-------------CCCcEEEEECC-CCceeEEee----cCCcCEEEEEEcCCCCEEEEE
Q psy3640 311 GHSAEVTFSPDQST--FCSCS-------------MDHTARIFNTN-SGQEMHTLK----AHTGPVISLQFSSDRNMLITG 370 (616)
Q Consensus 311 ~~~~~v~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~l~~g 370 (616)
+....++++|++++ ++++. .+|.+.+|++. .++....+. .+...+.+++|+|+|++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 22334689999995 44442 68999999997 466544443 245678999999999988877
Q ss_pred EC-CCcEEEEecc-cccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeC-CCcEEEEeCC--CCe
Q psy3640 371 SF-DSSIVVWDIQ-YQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSL-DGTAKLWDVR--TMC 443 (616)
Q Consensus 371 ~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~ 443 (616)
.. ++.|++|++. .. ....+..+. .+...+..++|+|+++++++++. ++.+.+|++. +++
T Consensus 163 ~~~~~~v~~~~~~~~g--------------~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 228 (365)
T 1jof_A 163 DLTANKLWTHRKLASG--------------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp ETTTTEEEEEEECTTS--------------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cCCCCEEEEEEECCCC--------------CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 64 6799999986 11 111122222 23556889999999999888775 6889998764 555
Q ss_pred EE---EEeec-------CCC------CEEEEE-EcCCCCEEEEEeCCC------cEEEEecCCceeeee---EEeccCCC
Q psy3640 444 CF---YTLKN-------HED------EVLDIA-FDYSGSKLATASSDQ------TANLWTVGGAVELLQ---TFYGHSNE 497 (616)
Q Consensus 444 ~~---~~~~~-------~~~------~v~~l~-~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~---~~~~~~~~ 497 (616)
.. ..+.. +.. .+..++ |+|+|++|+++..+. .|.+|++........ ....+..
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~- 307 (365)
T 1jof_A 229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS- 307 (365)
T ss_dssp EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-
T ss_pred EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-
Confidence 42 22221 111 488999 999999988776433 799999863222221 1211211
Q ss_pred eeeEEEEEEcC---CCCEEEEEeCC-CcEEEEecCCc
Q psy3640 498 VSKVLDIAFDY---SGSKLATASSD-QTAKLWTVGGA 530 (616)
Q Consensus 498 ~~~i~~~~~s~---~~~~l~~~~~d-g~i~vwd~~~~ 530 (616)
....++|+| +|++|++++.+ +.|.+|+++..
T Consensus 308 --~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 308 --GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp --CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred --CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 123578999 89999999875 89999998764
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=3.6e-18 Score=186.41 Aligned_cols=285 Identities=9% Similarity=-0.064 Sum_probs=196.8
Q ss_pred eecccCCcceEEEEECCCCCEEEEE--ECCCcEEEEECCCCcEEEEEeccCCcEE---------EEEEc--CCCCE-EEE
Q psy3640 181 KMLKSHLLPLTNITFDKFGTRCLTG--SYDRTCKLWDIKSGHEICTYRGHQNVVY---------AVAFS--EPYGC-LTG 246 (616)
Q Consensus 181 ~~l~~h~~~i~~v~~s~~g~~lasg--s~dg~i~iwd~~~~~~~~~~~~h~~~I~---------~l~fs--~~~~l-ls~ 246 (616)
..+.+|...+..++|++++-++++. +.++...||....+.....+..|...+. ...|+ ||++. ++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3456799999999999887777777 5588999999765666677777777766 66666 99987 755
Q ss_pred ECC--CcEEEEeCC--CCceEEEeeC-----CCCcEEEEEEeCCCCCEEEEEECC----------CeEEEEeCCC-----
Q psy3640 247 SYD--RTCKLWDIK--SGHEICTYRG-----HQNVVYAVAFSEPYGDKILTGSFD----------KTLKLWASAK----- 302 (616)
Q Consensus 247 s~d--~~I~iwd~~--~~~~~~~~~~-----h~~~V~~l~~~~~~~~~l~s~s~d----------g~i~iwd~~~----- 302 (616)
+.+ ..|.+|++. .......+.. |...+..++|+ |+++.|++++.+ ..|.+||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 544 556666665 2033455655 67789999999 899999998877 5899999988
Q ss_pred -cceeEEe-eec--eeeEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEeecCCcCEEEEEEcCCCCE
Q psy3640 303 -EECIQTY-RGH--SAEVTFSPDQSTFCSCSMD--------HTARIFNTN-SG---QEMHTLKAHTGPVISLQFSSDRNM 366 (616)
Q Consensus 303 -~~~~~~~-~~~--~~~v~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~l~~~~~~~~ 366 (616)
++..... .++ ...++|+|||+.|+.++.+ ..|.+||+. ++ +.......|...+..++|+|||++
T Consensus 176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 5543333 222 2345899999999987755 379999998 56 444444456788999999999998
Q ss_pred EEEEECCCc--EEEEecccccCCcccccccccccCCcceEEEecCcc--------ceeEEEEccCCCEEEEEeCCCcEEE
Q psy3640 367 LITGSFDSS--IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ--------EISNCLFNFSNSMIASSSLDGTAKL 436 (616)
Q Consensus 367 l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~dg~i~i 436 (616)
+++++.++. |.+||+.. .........+.. .+..++|++++.++++++. +.+++
T Consensus 256 ~~~~~~~~~~~l~~~~~~~----------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l 318 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPAT----------------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL 318 (662)
T ss_dssp EEEECTTSSCEEEEECTTT----------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred EEEECCCCCeEEEEEECCC----------------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence 888888884 45555421 111111111111 1457889999999999998 99999
Q ss_pred E--eCCCCeEEEEeecCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecCCc
Q psy3640 437 W--DVRTMCCFYTLKNHEDEVLDI-AFDYSGSKLATASSDQT--ANLWTVGGA 484 (616)
Q Consensus 437 w--d~~~~~~~~~~~~~~~~v~~l-~~~~~~~~l~~~~~dg~--i~iwd~~~~ 484 (616)
| |+.+++ +..+..+...+..+ +++.+.-.+++++.+.. +..+++.++
T Consensus 319 ~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 319 GILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8 666665 56777777777777 55444334444555544 444555444
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=5.8e-19 Score=179.70 Aligned_cols=317 Identities=10% Similarity=0.028 Sum_probs=208.5
Q ss_pred EEEECCCCcEEEEEeccCCc-----EEEEEEcCCCCEE-EEEC---CCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCC
Q psy3640 212 KLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGCL-TGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 282 (616)
Q Consensus 212 ~iwd~~~~~~~~~~~~h~~~-----I~~l~fs~~~~ll-s~s~---d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~ 282 (616)
...|..+++.+..+..+... +..++|+|||+.+ .... +..|.+||+.+++......++......+.|+ |+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s-pd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS-TD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC-TT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC-CC
Confidence 45578888888888765444 7788999999965 3332 2478999999887654444333223337788 89
Q ss_pred CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC
Q psy3640 283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS 362 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 362 (616)
++.|+.++.++.|.+||+.+++.......+.. +++++..++....++...+|. ....|+|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~sp 151 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQP 151 (396)
T ss_dssp SSEEEEEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCC
T ss_pred CCEEEEEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccc-----------------cccccCC
Confidence 99999999999999999998876655443322 556666666555444433332 1245788
Q ss_pred CCCEEEEE-----ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCC-----
Q psy3640 363 DRNMLITG-----SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLD----- 431 (616)
Q Consensus 363 ~~~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d----- 431 (616)
+++.++.. ..+..|.+||+. .... ..+..+...+..+.|+| ++..++..+.+
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~----------------~g~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIE----------------TGEL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETT----------------TCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred CCcceeeeeeccCCCcceEEEEECC----------------CCcE-EeeccCCcccccceECCCCCCEEEEEecCCCCCC
Confidence 88877654 356789999986 3332 23334566788999999 78877766543
Q ss_pred -CcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640 432 -GTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504 (616)
Q Consensus 432 -g~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 504 (616)
..|.+||+..++........ ...+..++|+|+|+.|+.++.+ +.|.+||+.++..... ..... .. .
T Consensus 215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~----~~-~ 287 (396)
T 3c5m_A 215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV--MVMPP----CS-H 287 (396)
T ss_dssp SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE--EECCS----EE-E
T ss_pred CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe--eeCCC----CC-C
Confidence 36888998766533322211 2357889999999988776544 3499999976533211 11111 12 7
Q ss_pred EEcC-CCCEEEEEe----------------CCCcEEEEecCCceEEeEEeecccc-----------CEEEEEEecCCCEE
Q psy3640 505 AFDY-SGSKLATAS----------------SDQTAKLWTVGGAVELLQTFYGHSN-----------EVSKVSFHPTGKLV 556 (616)
Q Consensus 505 ~~s~-~~~~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~l~~spdg~~l 556 (616)
.|+| +|+++++++ .++.|.+||+.++.. ..+..+.. .+..++|+|||+.|
T Consensus 288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence 8999 999888765 347899999977532 23334443 25678999999988
Q ss_pred EEEEC-CCcEEEe--cCCcCee
Q psy3640 557 LSGSQ-DTTCRLW--STESGEC 575 (616)
Q Consensus 557 ~s~s~-dg~i~iw--d~~~~~~ 575 (616)
+.++. ++...+| ++.+++.
T Consensus 366 ~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 366 LFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEECTTSSCEEEEEECCTTCC
T ss_pred EEEecCCCCceEEEEEEccccc
Confidence 87765 4554555 4444443
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.78 E-value=9.2e-15 Score=153.66 Aligned_cols=323 Identities=12% Similarity=0.043 Sum_probs=229.7
Q ss_pred CCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC--CCceEEEeeCCCCc
Q psy3640 196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK--SGHEICTYRGHQNV 272 (616)
Q Consensus 196 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~--~~~~~~~~~~h~~~ 272 (616)
+|.+.++++...+++|.++|..+++.+.++... ..+..+.|+||++++ +++.++.|.+||+. +++.+..+.... .
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~ 241 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E 241 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence 355566777788999999999999999888743 356689999999965 78899999999996 888888887543 4
Q ss_pred EEEEEEeC---CCCCEEEEEEC-CCeEEEEeCCCcceeEEeeec--------------eeeEEEcCCCCEEE-EEeCCCc
Q psy3640 273 VYAVAFSE---PYGDKILTGSF-DKTLKLWASAKEECIQTYRGH--------------SAEVTFSPDQSTFC-SCSMDHT 333 (616)
Q Consensus 273 V~~l~~~~---~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~l~-~~~~dg~ 333 (616)
...++|++ |+++++++++. ++++.++|..+.+.+..+... ...+..++++..++ ....+|.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~ 321 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK 321 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence 67999996 68888777665 599999999999988876522 23456777766554 4455699
Q ss_pred EEEEECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEec---
Q psy3640 334 ARIFNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--- 408 (616)
Q Consensus 334 i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 408 (616)
|.++|..+.+...... ........+.|+|++++++++. .++.|.++|.. +.+.......
T Consensus 322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~----------------t~kl~~~i~vgg~ 385 (567)
T 1qks_A 322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK----------------EGKLVAIEDTGGQ 385 (567)
T ss_dssp EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT----------------TTEEEEEEECSSS
T ss_pred EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC----------------CCcEEEEEeccCc
Confidence 9999987754332211 2334567889999999987776 47899999997 4333333322
Q ss_pred --CccceeEEEEccCCCEEE-EEe-CCCcEEEEeCCC-------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-----
Q psy3640 409 --HSQEISNCLFNFSNSMIA-SSS-LDGTAKLWDVRT-------MCCFYTLKNHEDEVLDIAFDYSGSKLATASS----- 472 (616)
Q Consensus 409 --~~~~i~~~~~~~~~~~l~-~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~----- 472 (616)
|.+.-.. .++|++..+. ++. .++.|.++|..+ .+.++++......-..+..+|+++++.+...
T Consensus 386 ~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 2211111 2577755444 443 458999999987 6778888765444455788999999998763
Q ss_pred --CCcEEEEecCCc-----eeeeeEEe-----ccCCCeeeEEEEEEcCCCCEEEEEeC-----CCcEEEEecCCceEEeE
Q psy3640 473 --DQTANLWTVGGA-----VELLQTFY-----GHSNEVSKVLDIAFDYSGSKLATASS-----DQTAKLWTVGGAVELLQ 535 (616)
Q Consensus 473 --dg~i~iwd~~~~-----~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~ 535 (616)
.++|.++|+.+. ......+. ........+..+.|+++|+.+.++.. ++.|.|+|..+. ++..
T Consensus 465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~ 543 (567)
T 1qks_A 465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL-ELKH 543 (567)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT-EEEE
T ss_pred ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc-eEEE
Confidence 359999999765 22222221 11223456889999999999887743 799999999884 5555
Q ss_pred Eee
Q psy3640 536 TFY 538 (616)
Q Consensus 536 ~~~ 538 (616)
.+.
T Consensus 544 ~i~ 546 (567)
T 1qks_A 544 VIK 546 (567)
T ss_dssp EEC
T ss_pred EeC
Confidence 554
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=1.5e-17 Score=181.58 Aligned_cols=302 Identities=10% Similarity=-0.037 Sum_probs=196.3
Q ss_pred EeeCCCCcEEEEEEeCCCCCEEEEE--ECCCeEEEEeCCCcceeEEeeecee------------eEEEc--CCCCE-EEE
Q psy3640 265 TYRGHQNVVYAVAFSEPYGDKILTG--SFDKTLKLWASAKEECIQTYRGHSA------------EVTFS--PDQST-FCS 327 (616)
Q Consensus 265 ~~~~h~~~V~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~------------~v~~~--~~~~~-l~~ 327 (616)
.+.+|...+..++++ ++.-.++.. +.++...+|....+.....+..+.. ...++ ||++. |+.
T Consensus 18 ~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 345688899999999 555455555 4478899998654444445443321 23454 99998 776
Q ss_pred EeC-CCcEEEEECC--CCceeEEeec-----CCcCEEEEEEcCCCCEEEEEECC----------CcEEEEecccccCCcc
Q psy3640 328 CSM-DHTARIFNTN--SGQEMHTLKA-----HTGPVISLQFSSDRNMLITGSFD----------SSIVVWDIQYQFGTRN 389 (616)
Q Consensus 328 ~~~-dg~i~i~d~~--~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~ 389 (616)
++. +..|.++++. .......+.. |...+.+++|+|||+.|++++.+ ..|++||+......
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA-- 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--
Confidence 654 5667777765 2033455555 56778999999999999998876 57999998620000
Q ss_pred cccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCC--------CcEEEEeCC-CC---eEEEEeecCCCCEE
Q psy3640 390 AYAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLD--------GTAKLWDVR-TM---CCFYTLKNHEDEVL 456 (616)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~ 456 (616)
.......+. .+...+..++|+|||+.|+.++.+ ..|++||+. ++ +.......+...+.
T Consensus 175 ---------~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 175 ---------DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ---------CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ---------cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 002223344 455677889999999999988755 379999998 56 44444445578899
Q ss_pred EEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEEeccCCCe-----eeEEEEEEcCCCCEEEEEeCCCcEEEE--ec
Q psy3640 457 DIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTFYGHSNEV-----SKVLDIAFDYSGSKLATASSDQTAKLW--TV 527 (616)
Q Consensus 457 ~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~vw--d~ 527 (616)
.++|+|+|+++++++.++ .|.+|+..++. .......+.... ..+..++++|++++++++.. +.+++| |.
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ 323 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP 323 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence 999999999888888888 55555654432 211111111110 01345889999999999999 999999 54
Q ss_pred CCceEEeEEeeccccCEEEE-EEecCCCEEEEEECCC--cEEEecCCcCeeeeEeccC
Q psy3640 528 GGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSGSQDT--TCRLWSTESGECIQVLKAH 582 (616)
Q Consensus 528 ~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h 582 (616)
.++ ....+..|...+..+ +++++.-++++++.+. .|.+||+.+++.......|
T Consensus 324 ~~~--~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 324 ESG--ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp TTT--EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred CCC--cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence 443 256677777777776 4443332344455554 4556677677655443444
No 174
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.77 E-value=4.8e-16 Score=150.53 Aligned_cols=240 Identities=11% Similarity=0.215 Sum_probs=177.4
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe------cCccceeEEEE-ccCC
Q psy3640 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT------GHSQEISNCLF-NFSN 422 (616)
Q Consensus 350 ~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~-~~~~ 422 (616)
++-..+.+++++++++++++...++.|.+||.. ......+. .+...+..+++ .+++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-----------------g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g 89 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-----------------GRFKFQFGECGKRDSQLLYPNRVAVVRNSG 89 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-----------------SCEEEEECCBSSSTTCBSSEEEEEEETTTT
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-----------------CcEEEEecccCCCcccccCceEEEEEcCCC
Confidence 345678999999999988888889999999974 12222221 23356788888 4667
Q ss_pred CEEEEEeC-CCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee
Q psy3640 423 SMIASSSL-DGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500 (616)
Q Consensus 423 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 500 (616)
.++++... ++.|.+|| .+++.+..+.. +...+.+++++++|+++++...++.|.+|+.... ....+.. ......
T Consensus 90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~-~~~~~~ 165 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGC-SKHLEF 165 (286)
T ss_dssp EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEEC-TTTCSS
T ss_pred eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCC-CCccCC
Confidence 66666543 78999999 56766666643 3457899999999998888778899999997543 2222221 122234
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc--ccCEEEEEEecCCCEEEEEECCC-cEEEecCCcCeeee
Q psy3640 501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH--SNEVSKVSFHPTGKLVLSGSQDT-TCRLWSTESGECIQ 577 (616)
Q Consensus 501 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~spdg~~l~s~s~dg-~i~iwd~~~~~~~~ 577 (616)
...++++++++++++...++.|.+|+.... .+..+..+ ...+..++++|+|+++++...++ .|.+|+. +++.+.
T Consensus 166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~ 242 (286)
T 1q7f_A 166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS 242 (286)
T ss_dssp EEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred cEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence 678999999998888888999999998653 33344332 36789999999999888887776 9999995 577777
Q ss_pred EeccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 578 VLKAHED--DVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 578 ~~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
.+..+.. .+.+++++|+|+++++ +.|++|++|++..
T Consensus 243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 7765443 4789999999987777 6799999999864
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=1.4e-14 Score=152.35 Aligned_cols=318 Identities=11% Similarity=0.025 Sum_probs=227.5
Q ss_pred EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC--CcceeEEeeec--eeeEEE
Q psy3640 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA--KEECIQTYRGH--SAEVTF 318 (616)
Q Consensus 243 lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~--~~~v~~ 318 (616)
+++...+++|.++|..+++.+..+... ..+..+.|+ |+++++++++.|+.|.+||+. +++.+.++... ...+++
T Consensus 170 ~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~ 247 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 247 (567)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence 446678899999999999999888743 356789999 899999999999999999996 77777777533 345789
Q ss_pred c----CCCCEEEEEeC-CCcEEEEECCCCceeEEeecC----------Cc-CEEEEEEcCCCCEEEE-EECCCcEEEEec
Q psy3640 319 S----PDQSTFCSCSM-DHTARIFNTNSGQEMHTLKAH----------TG-PVISLQFSSDRNMLIT-GSFDSSIVVWDI 381 (616)
Q Consensus 319 ~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~~-~v~~l~~~~~~~~l~~-g~~dg~i~iwd~ 381 (616)
+ |++++++++.. ++.+.++|..+.+.+..+... .. .+..+..++++..+++ ...+|.|.++|.
T Consensus 248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 9 69998887765 589999999999988876532 12 6788888888665444 455699999998
Q ss_pred ccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeec-----CCCCE
Q psy3640 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKN-----HEDEV 455 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v 455 (616)
... ................+.|+|++++++++. .++.|.++|+.+++.+..+.. |.+.-
T Consensus 328 ~~~---------------~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g 392 (567)
T 1qks_A 328 TDL---------------NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 392 (567)
T ss_dssp TCS---------------SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred CCC---------------ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence 621 011111112334456788999999887766 568899999999988777654 22222
Q ss_pred EEEEEcCCCCEEE-EEe-CCCcEEEEecCCc------eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-------CC
Q psy3640 456 LDIAFDYSGSKLA-TAS-SDQTANLWTVGGA------VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-------DQ 520 (616)
Q Consensus 456 ~~l~~~~~~~~l~-~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg 520 (616)
..+ ++|++..++ +.. .++.|.++|.... .+..+.+...... -..+..+|+++++.+... .+
T Consensus 393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g---~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---SLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC---CEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 222 578755544 443 4689999998762 2334444433211 123678999999998774 45
Q ss_pred cEEEEecCCc-----eEEeEEee--------ccccCEEEEEEecCCCEEEEEE-----CCCcEEEecCCcCeeeeEecc
Q psy3640 521 TAKLWTVGGA-----VELLQTFY--------GHSNEVSKVSFHPTGKLVLSGS-----QDTTCRLWSTESGECIQVLKA 581 (616)
Q Consensus 521 ~i~vwd~~~~-----~~~~~~~~--------~h~~~v~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~ 581 (616)
.|.++|+.+. ......+. .-...+..+.|+|+|+.+..+. .++.|.|+|.++++++.+++.
T Consensus 469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9999999764 22222221 1235788999999999887763 368999999999999988875
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.3e-15 Score=147.55 Aligned_cols=236 Identities=11% Similarity=0.184 Sum_probs=180.7
Q ss_pred ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe------ccCCcEEEEEE-cCCCCEEEEEC--CCcEEE
Q psy3640 184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR------GHQNVVYAVAF-SEPYGCLTGSY--DRTCKL 254 (616)
Q Consensus 184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~------~h~~~I~~l~f-s~~~~lls~s~--d~~I~i 254 (616)
.+|...+.+++++|+|+++++.+.++.|.+||.. ++.+..+. +|...+..+++ .+++.++++.. ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4677789999999999988888889999999987 66666664 24467899999 57787776653 899999
Q ss_pred EeCCCCceEEEee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee-----ceeeEEEcCCCCEEEEE
Q psy3640 255 WDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG-----HSAEVTFSPDQSTFCSC 328 (616)
Q Consensus 255 wd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~l~~~ 328 (616)
|| .+++.+..+. .+...+..+++. ++++.+++...++.|.+|+.. ++.+..+.. ....++++++++.+++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 6677776664 345678999998 778888887788999999964 555555531 24567999999988877
Q ss_pred eCCCcEEEEECCCCceeEEeecC--CcCEEEEEEcCCCCEEEEEECCC-cEEEEecccccCCcccccccccccCCcceEE
Q psy3640 329 SMDHTARIFNTNSGQEMHTLKAH--TGPVISLQFSSDRNMLITGSFDS-SIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 329 ~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
..++.|.+||.. ++.+..+..+ ...+..++++++|+++++...++ .|.+||.. ...+..
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-----------------g~~~~~ 243 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----------------GQLISA 243 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----------------SCEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-----------------CCEEEE
Confidence 788999999974 5666666433 35789999999999888887775 99999963 333444
Q ss_pred EecCc--cceeEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy3640 406 LTGHS--QEISNCLFNFSNSMIASSSLDGTAKLWDVRTM 442 (616)
Q Consensus 406 ~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 442 (616)
+..+. ..+..++++++++++++ +.++.|++|+....
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 44332 23678999999987776 67899999997653
No 177
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=4.3e-16 Score=154.03 Aligned_cols=244 Identities=15% Similarity=0.151 Sum_probs=180.1
Q ss_pred CcCEEEEEEcCCCCEEEEEECC------------------------CcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640 352 TGPVISLQFSSDRNMLITGSFD------------------------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (616)
-+.+.+++++|+|+++++...+ +.|.+||.. .........
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----------------~g~~~~~~~ 86 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN----------------NAEILQSSG 86 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT----------------TCCEEEEEC
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC----------------CCeEEeccC
Confidence 4578999999999999888777 468888875 333333332
Q ss_pred -cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EEEEee---------cCCCCEEEEEEcC-CCCEEEEEe-CCC
Q psy3640 408 -GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC-CFYTLK---------NHEDEVLDIAFDY-SGSKLATAS-SDQ 474 (616)
Q Consensus 408 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~l~~~~-~~~~l~~~~-~dg 474 (616)
.+......++++++++++++...++.|++||..... .+..+. .+-.....++++| ++.++++.+ .++
T Consensus 87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 334567889999999988888888999999986542 445542 3344689999999 788888876 689
Q ss_pred cEEEEecCCceeeeeEEecc-------CCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEe--eccccCE
Q psy3640 475 TANLWTVGGAVELLQTFYGH-------SNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTF--YGHSNEV 544 (616)
Q Consensus 475 ~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v 544 (616)
.|++|+.... ....+... .........++++|+ +.++++...++.|++|+..++ +.+..+ ..+...+
T Consensus 167 ~I~~~~~~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~ 243 (329)
T 3fvz_A 167 RIVQFSPSGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNV 243 (329)
T ss_dssp EEEEECTTSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCE
T ss_pred eEEEEcCCCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCc
Confidence 9999996543 22222211 122344678999999 777777778999999999853 444444 3456778
Q ss_pred EEEEEec------CCCEEEEEECCCcEEEecCCcCeeeeEe---ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 545 SKVSFHP------TGKLVLSGSQDTTCRLWSTESGECIQVL---KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 545 ~~l~~sp------dg~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
..++|+| +|+..++...+..|++|+..+++.+..+ .++...+..++++|+|.++++...++.|++|++..
T Consensus 244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 9999999 3333333334558999999999999887 36777799999999998888888999999999864
No 178
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=5.9e-16 Score=153.06 Aligned_cols=237 Identities=9% Similarity=0.073 Sum_probs=183.4
Q ss_pred CCcceEEEEECCCCCEEEEEECC------------------------CcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCC
Q psy3640 186 HLLPLTNITFDKFGTRCLTGSYD------------------------RTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEP 240 (616)
Q Consensus 186 h~~~i~~v~~s~~g~~lasgs~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~ 240 (616)
-...+.+++++|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....++++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 45679999999999999988877 479999999999877665 45568999999999
Q ss_pred CCEE-EEECCCcEEEEeCCCCc-eEEEe---------eCCCCcEEEEEEeCCCCCEEEEEE-CCCeEEEEeCCCcceeEE
Q psy3640 241 YGCL-TGSYDRTCKLWDIKSGH-EICTY---------RGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQT 308 (616)
Q Consensus 241 ~~ll-s~s~d~~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~ 308 (616)
+.++ +...++.|++||..... .+..+ .++......+++++.++.++++.+ .++.|++|+ .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9966 55668999999986543 45555 345557899999943788888886 689999999 56666666
Q ss_pred eeec-------------eeeEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEE---
Q psy3640 309 YRGH-------------SAEVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLIT--- 369 (616)
Q Consensus 309 ~~~~-------------~~~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~--- 369 (616)
+... ...++++|+ +..+++...++.|++||..+++.+..+. .+...+.+++++| +..+++
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 5421 456799998 6667777788999999999899888874 4556788999999 333333
Q ss_pred ----EECCCcEEEEecccccCCcccccccccccCCcceEEE---ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy3640 370 ----GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL---TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR 440 (616)
Q Consensus 370 ----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 440 (616)
...+..|++|+.. ....+..+ ..+......++++++|.++++...++.|++|++.
T Consensus 260 ~~v~~~~~~~v~~~~~~----------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFS----------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp CCTTCSCCCCEEEEETT----------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EEeccCCCcEEEEEEcC----------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 2334589999986 55555555 3566678899999999888888889999999874
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.74 E-value=8.9e-16 Score=153.11 Aligned_cols=239 Identities=9% Similarity=0.093 Sum_probs=166.9
Q ss_pred CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC---Cc--EEEEecccccCCcccccccccccCCcceEE
Q psy3640 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD---SS--IVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
++.|.+||+.+++... + ..+..++|+|||+.|+..+.+ +. |.+|++. .......
T Consensus 42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~----------------~g~~~~l 100 (347)
T 2gop_A 42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE----------------TLSSKKI 100 (347)
T ss_dssp EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT----------------TTEEEEE
T ss_pred cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC----------------CCceEEE
Confidence 5678999998876533 3 567889999999999887754 33 6667764 3333333
Q ss_pred EecCccceeEEEEccCCCEEEEEeCC---------------------------CcEEEEeCCCCeEEEEeecCCCCEEEE
Q psy3640 406 LTGHSQEISNCLFNFSNSMIASSSLD---------------------------GTAKLWDVRTMCCFYTLKNHEDEVLDI 458 (616)
Q Consensus 406 ~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~l 458 (616)
...+ . +..+.|+|+++.|+.++.+ ..|.+||+.+++.+..+.. . .+..+
T Consensus 101 ~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~ 176 (347)
T 2gop_A 101 LEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSG 176 (347)
T ss_dssp EEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEE
T ss_pred EcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccccc
Confidence 3333 3 8899999999988887642 5799999999887455554 3 78899
Q ss_pred EEcCCCCEEEEEeCCC-------cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC--------CcEE
Q psy3640 459 AFDYSGSKLATASSDQ-------TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD--------QTAK 523 (616)
Q Consensus 459 ~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~ 523 (616)
+|+|+| +++++..++ ...+|.+.++ ... .+..+ ..+..+ +|+|++|+.++.+ ..|.
T Consensus 177 ~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~-~l~~~----~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~ 247 (347)
T 2gop_A 177 IWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEE-KMFEK----VSFYAV--DSDGERILLYGKPEKKYMSEHNKLY 247 (347)
T ss_dssp EEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEE-EEEEE----ESEEEE--EECSSCEEEEECCSSSCCCSSCEEE
T ss_pred cCCCCe-EEEEEecccccccccccccEEEeCCC-ceE-EeccC----cceeeE--CCCCCEEEEEEccccCCccccceEE
Confidence 999999 777776542 3455544332 222 22222 223333 9999999887754 3677
Q ss_pred EEecCCceEEeEEeeccccCEEE-EEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEee
Q psy3640 524 LWTVGGAVELLQTFYGHSNEVSK-VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITAS 602 (616)
Q Consensus 524 vwd~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s 602 (616)
+|| + .........|...+.. +.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+| .++++++
T Consensus 248 ~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 248 IYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEE
T ss_pred EEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEc
Confidence 888 3 2344444556677886 9999 88 99999999999999 8866654444 4577899999998 6788887
Q ss_pred CCCcE-EEccc
Q psy3640 603 KDNTC-CIWRS 612 (616)
Q Consensus 603 ~Dg~i-~vW~~ 612 (616)
.++.. .+|.+
T Consensus 319 ~~~~~~~l~~~ 329 (347)
T 2gop_A 319 TATRLRELFTW 329 (347)
T ss_dssp CSSSCCEEEEE
T ss_pred CCCChHHheEe
Confidence 77765 77765
No 180
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.74 E-value=1.2e-15 Score=151.36 Aligned_cols=273 Identities=7% Similarity=0.008 Sum_probs=195.7
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEe
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~ 266 (616)
..|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+++++++ ++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 457888999998888888888999999 466777788888888999999999976 5677899999999998876655
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEee-----eceeeEEEcCCCCEEEEEeC------C
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYR-----GHSAEVTFSPDQSTFCSCSM------D 331 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~l~~~~~------d 331 (616)
..+...+.+++++ ++++++++...+ +.|.+||..++.....+. .....++++|++..+++... .
T Consensus 83 ~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 4577889999999 778888877766 689999998877653332 12345789999987776653 3
Q ss_pred CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
+.|..+|..+++... +..+...+..++|+|+++.++++ +.++.|.+||+.......... .........++
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-------~~~~~~~~~~~- 232 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-------GATIPYYFTGH- 232 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-------EEEEEEECCSS-
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc-------cceEEEecCCC-
Confidence 556667766554433 32334467899999999866554 457899999985210000000 00000011111
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC------CEEEEEEcCCCCEEEEEeCCC
Q psy3640 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED------EVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~dg 474 (616)
..+..++++++++++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|++++.++
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 35677999999998888888889999998 4666666654433 688999999987777666553
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.73 E-value=2.2e-15 Score=149.35 Aligned_cols=264 Identities=11% Similarity=0.074 Sum_probs=185.8
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES 394 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~ 394 (616)
.++|++++..++....++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~------------ 74 (333)
T 2dg1_A 10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE------------ 74 (333)
T ss_dssp BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT------------
T ss_pred eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC------------
Confidence 34567777666666777888888 355666777777788999999999988888889999999986
Q ss_pred ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEE
Q psy3640 395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLA 468 (616)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~ 468 (616)
..........+...+.+++++++++++++...+ +.|.+||..++.....+. .....+.+++++|+|++++
T Consensus 75 ----~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 75 ----TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp ----TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred ----CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Confidence 333333333456779999999999988877766 689999998876543332 2345799999999998877
Q ss_pred EEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE-eCCCcEEEEecCCc-eEE--e----
Q psy3640 469 TASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAKLWTVGGA-VEL--L---- 534 (616)
Q Consensus 469 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~-~~~--~---- 534 (616)
+... .+.|..++..+... ..+.. .......++++|+++.++.+ ..++.|.+|+.... ... .
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTV--TPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCE--EEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred EeccccccCCCceEEEEeCCCCEE--EEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 6653 24565666543221 11111 11235678999999866554 45789999999532 111 1
Q ss_pred -EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcc------cEEEEEEeeCCCEEEEeeCC
Q psy3640 535 -QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED------DVFSCGFNYNGDTIITASKD 604 (616)
Q Consensus 535 -~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~V~~l~~s~~~~~l~t~s~D 604 (616)
..+.++ ..+..++++++|++.++...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.+
T Consensus 226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111122 46788999999998888888899999998 5777766654433 58899999998777666555
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=4.8e-15 Score=147.75 Aligned_cols=256 Identities=11% Similarity=0.112 Sum_probs=177.3
Q ss_pred cceEEEEECCCCCEEEEEE---------CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECC---C--cE
Q psy3640 188 LPLTNITFDKFGTRCLTGS---------YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYD---R--TC 252 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs---------~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d---~--~I 252 (616)
..+...++ ||+++|... .++.|.+||+.+++... + ..+..++|+|||+.+ .++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45777888 899888653 25679999999887543 3 568899999999855 33332 3 48
Q ss_pred EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC---------------------------CeEEEEeCCCcce
Q psy3640 253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD---------------------------KTLKLWASAKEEC 305 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---------------------------g~i~iwd~~~~~~ 305 (616)
.+||+.+++.......+ . +..++|+ |+++.|+.++.+ ..|.+||+.+++.
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 88899988776555543 3 9999999 889988888743 5799999998876
Q ss_pred eEEeee-ceeeEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC---
Q psy3640 306 IQTYRG-HSAEVTFSPDQSTFCSCSMDH-------TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--- 374 (616)
Q Consensus 306 ~~~~~~-~~~~v~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--- 374 (616)
+..+.. ....++|+|++ .++++..++ ...+|.+.+++ ...+..+ ..+..+ +|+|+.|+.++.++
T Consensus 165 ~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 165 IEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKY 239 (347)
T ss_dssp EEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSC
T ss_pred EeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCC
Confidence 333332 44567899999 777776542 33444443444 3444444 555554 89999888877543
Q ss_pred -----cEEEEecccccCCcccccccccccCCcceEEEecCccceeE-EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q psy3640 375 -----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN-CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448 (616)
Q Consensus 375 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 448 (616)
.|.+|| . . ........+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+
T Consensus 240 ~~~~~~l~~~d-~----------------~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~ 297 (347)
T 2gop_A 240 MSEHNKLYIYD-G----------------K-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PI 297 (347)
T ss_dssp CCSSCEEEEEC-S----------------S-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EE
T ss_pred ccccceEEEEC-C----------------C-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EE
Confidence 566666 2 1 111222334556665 8899 88 88999999999999 8766554 34
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecC
Q psy3640 449 KNHEDEVLDIAFDYSGSKLATASSDQTA-NLWTVG 482 (616)
Q Consensus 449 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i-~iwd~~ 482 (616)
..+...|.+++|+| ..+++++.++.. .+|.+.
T Consensus 298 ~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 44577899999999 677777777664 677665
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3.3e-15 Score=163.92 Aligned_cols=244 Identities=9% Similarity=0.004 Sum_probs=173.8
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCC-----cEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640 351 HTGPVISLQFSSDRNMLITGSFDS-----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI 425 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 425 (616)
|...+..++|+|||++|+.+..++ .|++||+. .+....... ....+..++|+||++.|
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------tg~~~~~~~-~~~~~~~~~wspDg~~l 185 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------GAKELPDVL-ERVKFSCMAWTHDGKGM 185 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------TTEEEEEEE-EEECSCCEEECTTSSEE
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------CCCCCcccc-cCcccceEEEEeCCCEE
Confidence 334678899999999998776543 89999997 333333222 22236789999999999
Q ss_pred EEEeCCCc----------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEe
Q psy3640 426 ASSSLDGT----------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASS-----DQTANLWT 480 (616)
Q Consensus 426 ~~~~~dg~----------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd 480 (616)
+.++.++. |++|++.+++ .+.....+...+..+.|+|+|++|+..+. +..+.+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 99988765 9999998875 22222234556889999999999988765 56899999
Q ss_pred cCC------ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCCceE-EeEEeecccc--CEEEE
Q psy3640 481 VGG------AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGGAVE-LLQTFYGHSN--EVSKV 547 (616)
Q Consensus 481 ~~~------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~-~~~~~~~h~~--~v~~l 547 (616)
+.+ +......+..+..... ..|+++|+.|+..+.. +.|.+|++.+... ....+..|.. .+..+
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~ 341 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEY----DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCE----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred CcccccccCCccceEEeeCCCCcEE----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence 875 3222333444333321 2578899988877653 3599999876421 1234445544 68889
Q ss_pred EEecCCCEEEEEECCCc--EEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe-e---CCCcEEEcccCCC
Q psy3640 548 SFHPTGKLVLSGSQDTT--CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA-S---KDNTCCIWRSMNR 615 (616)
Q Consensus 548 ~~spdg~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~-s---~Dg~i~vW~~~~~ 615 (616)
+|++++.++++...|+. |.+|++.+|+.+..+..+.+.|..++++|+++.++.. + ..++++.||+.++
T Consensus 342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 99988888888888885 5667777888888888888889999999999766633 2 3478999998764
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.70 E-value=1.6e-13 Score=133.30 Aligned_cols=275 Identities=9% Similarity=-0.062 Sum_probs=184.3
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
.+++.+++...++...++.|..||.. ++.... ...+...+.++++++++.+.++...++.|..||...
T Consensus 19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g---------- 87 (299)
T 2z2n_A 19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG---------- 87 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS----------
T ss_pred ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC----------
Confidence 44556666655554445667777766 433221 122346789999999998877776688899998641
Q ss_pred cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEVLDIAFDYSGSKLATASS 472 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~ 472 (616)
.............+..+++.+++.++++...++.|..||. +++.... .......+..+++++++...++...
T Consensus 88 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 88 ------IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp ------CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred ------cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 1111111123456788999999988888777889999998 5543322 2234567899999999988877777
Q ss_pred CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640 473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT 552 (616)
Q Consensus 473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 552 (616)
++.+..|+. ++... . +.. ......+..+++++++.++++...++.|.+|+. ++.........+...+..++++++
T Consensus 161 ~~~i~~~~~-~g~~~-~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 161 NNAIGRITE-SGDIT-E-FKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG 235 (299)
T ss_dssp TTEEEEECT-TCCEE-E-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred CCEEEEEcC-CCcEE-E-eeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence 789999998 33221 1 111 112234678999999998777777899999999 433222223335567899999999
Q ss_pred CCEEEEEECCCcEEEecCCcCeeeeE-eccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 553 GKLVLSGSQDTTCRLWSTESGECIQV-LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 553 g~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
|++.++...++.|..||. +++.... +..+...+.++++ +++.+.++.+ .+.+..++..++
T Consensus 236 g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 236 IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 987666657789999998 4553322 3445567999999 8888777665 556777776553
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.69 E-value=3e-13 Score=131.38 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=195.4
Q ss_pred cccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEEC-CCcEEEEeCCCC
Q psy3640 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGCLTGSY-DRTCKLWDIKSG 260 (616)
Q Consensus 183 l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~~lls~s~-d~~I~iwd~~~~ 260 (616)
+..+...+.+++++++|+..++...++.|.+||.. ++..... ..+...+.++++.+++.+..+.. ++.|..||.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44566789999999999988777668899999988 5543322 23557899999999999775554 7889999986 4
Q ss_pred ce-EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-e---eceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640 261 HE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-R---GHSAEVTFSPDQSTFCSCSMDHTAR 335 (616)
Q Consensus 261 ~~-~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~~~~l~~~~~dg~i~ 335 (616)
+. ...+......+.++++. +++..+++...++.|..||. +++..... . .....+++.+++...++...++.|.
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp CEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred cEEEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 33 22222355678999998 77888887777889999998 55443221 1 2345678999998887777778999
Q ss_pred EEECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 336 IFNTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 336 i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
.||. +++.... .......+.++++++++++.++...++.|.+||.. . .........+...+.
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---------------~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-G---------------EITEFKIPTPNARPH 228 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C---------------CEEEEECSSTTCCEE
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-C---------------cEEEEECCCCCCCce
Confidence 9998 6665432 33345568899999999877766667899999872 1 111111223446688
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
.+++++++.+.++...++.|..||. ++..... +..+...+.++++ +++.+.++.. .+.+..++..+
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred eEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 9999999987776667789999998 4543222 2334567899999 8887666654 56677777654
No 186
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=7.3e-15 Score=142.93 Aligned_cols=243 Identities=12% Similarity=0.061 Sum_probs=173.3
Q ss_pred ceeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC
Q psy3640 343 QEMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS 421 (616)
Q Consensus 343 ~~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 421 (616)
..+..+..+.....+++|+|+++ +++++..++.|..||.. .. ...+..+...+..++++++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~----------------~~--~~~~~~~~~~~~~l~~~~d 79 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD----------------GQ--LSPEMHPSHHQNGHCLNKQ 79 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT----------------SC--EEEEESSCSSEEEEEECTT
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC----------------CC--eEEEECCCCCcceeeECCC
Confidence 34445555666778999999998 77888889999999985 33 4555566777899999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEe
Q psy3640 422 NSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASS-----------------DQTANLWT 480 (616)
Q Consensus 422 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~iwd 480 (616)
++++++...++.|.+||..+++........ ...+.+++++|+|+++++.+. .+.|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 998887777789999999887654433221 234678999999998887321 23455555
Q ss_pred cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE---eEEeeccccCEEEEEEecCCCEEE
Q psy3640 481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL---LQTFYGHSNEVSKVSFHPTGKLVL 557 (616)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~l~~spdg~~l~ 557 (616)
... .. ...... ......++|+|+++.+++.+.++.|.+|++...... ...+..+...+..++++++|++.+
T Consensus 160 ~~g--~~-~~~~~~---~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 233 (296)
T 3e5z_A 160 PDG--TL-SAPIRD---RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA 233 (296)
T ss_dssp TTS--CE-EEEECC---CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred CCC--CE-EEeecC---CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence 442 22 222222 223467899999999977777899999998621122 222333556678899999998766
Q ss_pred EEECCCcEEEecCCcCeeeeEeccCcccEEEEEE-eeCCCEEEEeeCCCcEEEcccCC
Q psy3640 558 SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF-NYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 558 s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
+. ++.|.+|+.+ ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus 234 ~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 234 SA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp EE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred Ec--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 66 7889999986 888888887777 899999 48889899888775 33334433
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=3.3e-14 Score=136.05 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=180.8
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCC-CcEEE
Q psy3640 198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYA 275 (616)
Q Consensus 198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~-~~V~~ 275 (616)
.++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+++++. +.++.|..||. +|+.+..+..+. ..+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 46899999999999999999999999998876 5789999999999887 66889999999 899999998753 57888
Q ss_pred EEEeCCCCCEEEEEEC-CCeEEEEeCCCcceeEEeeec---------eeeEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy3640 276 VAFSEPYGDKILTGSF-DKTLKLWASAKEECIQTYRGH---------SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEM 345 (616)
Q Consensus 276 l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 345 (616)
+.+. ++++.+++.+. ++.+..+|. +++.+..+... ...++..++++++++...++.|..||.. |+.+
T Consensus 82 ~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 82 ARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9998 89999999887 788888886 67776665421 1235788999999999999999999998 9999
Q ss_pred EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc------cceeEEEEc
Q psy3640 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS------QEISNCLFN 419 (616)
Q Consensus 346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~ 419 (616)
.++... ..+.++...++|+.+++++.++.|..+|.. +++.+..+.... ..+..++..
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~----------------tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE----------------SNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT----------------TCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc----------------CCcEEEEecCCCCCCccccccccceEc
Confidence 998764 345677888999999999888899999986 456665554322 236677788
Q ss_pred cCCCEEEEEeCC--------CcEEEEeC-CCCeEEEEeec
Q psy3640 420 FSNSMIASSSLD--------GTAKLWDV-RTMCCFYTLKN 450 (616)
Q Consensus 420 ~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~ 450 (616)
+++.++++.... +..+++.+ .+++.+.++..
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 888888877522 12234444 45666655543
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=1.6e-14 Score=158.45 Aligned_cols=241 Identities=9% Similarity=-0.001 Sum_probs=173.1
Q ss_pred cCCcceEEEEECCCCCEEEEEECCC-----cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCc-------
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDR-----TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRT------- 251 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg-----~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~------- 251 (616)
+|...+..++|||||++||.++.++ +|++||+.+++.+.....+ ..+..++|+||++. +.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4656789999999999999776543 8999999999887643322 23678999999984 46666655
Q ss_pred ---------EEEEeCCCCce--EEEee--CCCCcEEEEEEeCCCCCEEEEEEC-----CCeEEEEeCCC------cc-ee
Q psy3640 252 ---------CKLWDIKSGHE--ICTYR--GHQNVVYAVAFSEPYGDKILTGSF-----DKTLKLWASAK------EE-CI 306 (616)
Q Consensus 252 ---------I~iwd~~~~~~--~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~~ 306 (616)
|++|++.+++. ...+. .|...+..+.|+ +++++|+.++. +..|.+||+.+ +. ..
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999998863 23333 355668899999 88999888775 56899999986 43 34
Q ss_pred EEeeecee--eEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eeEEeecCCc--CEEEEEEcCCCCEEEEEECCCcE
Q psy3640 307 QTYRGHSA--EVTFSPDQSTFCSCSMD----HTARIFNTNSGQ--EMHTLKAHTG--PVISLQFSSDRNMLITGSFDSSI 376 (616)
Q Consensus 307 ~~~~~~~~--~v~~~~~~~~l~~~~~d----g~i~i~d~~~~~--~~~~~~~~~~--~v~~l~~~~~~~~l~~g~~dg~i 376 (616)
..+..+.. ...++|++..++..+.. +.|.+||+.++. ....+..|.. .+..++|++++.++++...++..
T Consensus 280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 44443332 22588999988877654 359999998774 2344544544 67889999777888888888865
Q ss_pred EE--EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCe
Q psy3640 377 VV--WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL----DGTAKLWDVRTMC 443 (616)
Q Consensus 377 ~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~ 443 (616)
++ |++. .+.....+..+...+..+.+++++..++.... .+.++.||+.+++
T Consensus 360 ~l~~~~~~----------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLA----------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETT----------------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECC----------------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 55 5543 33445556666777888889998876664432 3689999998876
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.67 E-value=5.3e-14 Score=136.80 Aligned_cols=241 Identities=10% Similarity=0.023 Sum_probs=175.5
Q ss_pred CcEEEEEeccCCcEEEEEEcCCCC--EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEE
Q psy3640 219 GHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 296 (616)
Q Consensus 219 ~~~~~~~~~h~~~I~~l~fs~~~~--lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~ 296 (616)
+..+..+..+.....+++|+|++. ++++..++.|..||..++ ...+..+...+.+++++ ++++++++...++.|.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~-~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLN-KQGHLIACSHGLRRLE 93 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEEC-TTCCEEEEETTTTEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeEC-CCCcEEEEecCCCeEE
Confidence 344455666677788999999998 447778999999999988 56777788889999999 7888887777779999
Q ss_pred EEeCCCcceeEEeee-------ceeeEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeEEeecCC
Q psy3640 297 LWASAKEECIQTYRG-------HSAEVTFSPDQSTFCSC----S-------------MDHTARIFNTNSGQEMHTLKAHT 352 (616)
Q Consensus 297 iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~ 352 (616)
+||..+++....... ....++++|+++++++. + ..+.|..++.. ++ ...+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence 999988875543321 12357899999988873 2 13456666655 44 34445566
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC-cceEEEecCccceeEEEEccCCCEEEEEeCC
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH-KPIHILTGHSQEISNCLFNFSNSMIASSSLD 431 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 431 (616)
.....++|+|+++.+++.+.++.|.+|++.... .. .....+..+...+..++++++|++.++. +
T Consensus 172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g-------------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~ 236 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG-------------ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G 236 (296)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEEEECSSS-------------CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred CCCccEEECCCCCEEEEeCCCCeEEEEEECCCC-------------cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence 678999999999988777778999999985210 00 0011222344556789999999876666 7
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEecC
Q psy3640 432 GTAKLWDVRTMCCFYTLKNHEDEVLDIAF-DYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 432 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
+.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..
T Consensus 237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 889999986 777777777766 899999 68999999988764 4344443
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=4.2e-15 Score=162.62 Aligned_cols=192 Identities=11% Similarity=0.049 Sum_probs=127.8
Q ss_pred CCCcEEEEEEeCCCCCEEEE-----EECCCeEEEEeCCCccee-EE-eeece-eeEEEcCCCCEEEEEeCCCc-------
Q psy3640 269 HQNVVYAVAFSEPYGDKILT-----GSFDKTLKLWASAKEECI-QT-YRGHS-AEVTFSPDQSTFCSCSMDHT------- 333 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~-~~-~~~~~-~~v~~~~~~~~l~~~~~dg~------- 333 (616)
|...+.+++|| |++++|+. |+.+.+|++||+.+++.+ .. +.... ..++|+||++.|+.++.+..
T Consensus 119 ~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 119 GTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 44567788888 77887773 344568999999999865 22 22221 56799999999999988776
Q ss_pred ------EEEEECCCCc----eeEEeecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEecccccCCcccccccccccC
Q psy3640 334 ------ARIFNTNSGQ----EMHTLKAHTGPVISLQFSSDRNMLITGSFDS----SIVVWDIQYQFGTRNAYAESTYRAS 399 (616)
Q Consensus 334 ------i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~ 399 (616)
|++|++.++. .+.....+...+.++.|+|||++|+.++.++ .|.+|+.. .
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~----------------~ 261 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG----------------E 261 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT----------------C
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC----------------C
Confidence 9999999876 3333344556789999999999988877665 56666542 2
Q ss_pred CcceEEEecCccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCeE---EEEeecC-CCCEEEEEEcCCCCEEEEEe
Q psy3640 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSL----DGTAKLWDVRTMCC---FYTLKNH-EDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~-~~~v~~l~~~~~~~~l~~~~ 471 (616)
. ....+..+...+....+ +++. ++..+. ++.|.+||+.++.. ...+..+ ...+..++++ ++.++++..
T Consensus 262 ~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 262 K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 2 23344445555555555 5666 444443 57899999987642 2222222 3456667776 556667777
Q ss_pred CCCcEEEEec
Q psy3640 472 SDQTANLWTV 481 (616)
Q Consensus 472 ~dg~i~iwd~ 481 (616)
.|+..++|.+
T Consensus 338 ~dg~~~l~~~ 347 (695)
T 2bkl_A 338 KDATSEVRVA 347 (695)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 7777666654
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.66 E-value=2.5e-14 Score=137.03 Aligned_cols=239 Identities=7% Similarity=0.035 Sum_probs=169.6
Q ss_pred CEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640 354 PVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG 432 (616)
Q Consensus 354 ~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 432 (616)
...+++++++|++++ +.+.++.|.+||... .............+..++++++++++++.. ++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~----------------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~ 87 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS----------------TGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NN 87 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------EECCCCSCCSCCCEEECTTCCEEEEET-TT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC----------------cccceEeeCCcCCcceeEECCCCCEEEEcC-CC
Confidence 678999999998766 446788999998642 111111122334577899999998666655 88
Q ss_pred cEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC
Q psy3640 433 TAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS 511 (616)
Q Consensus 433 ~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 511 (616)
.|.+||....... .+. .....+..++++++|..+++...++.|.+|+..+....... .........++++++++
T Consensus 88 ~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~ 162 (270)
T 1rwi_B 88 RVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGN 162 (270)
T ss_dssp EEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECTTCC
T ss_pred EEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeCCCC
Confidence 9999998765433 232 23367899999999997777777889999976543222111 11122355789999999
Q ss_pred EEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640 512 KLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591 (616)
Q Consensus 512 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 591 (616)
++++...++.|.+|+....... .....+...+..++++++|.+.++...++.|.+|+............+...+.++++
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred EEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence 7777777899999998774332 222233367899999999987777777889999998765444333334456899999
Q ss_pred eeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 592 NYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 592 s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
+++|+++++...++.|+++++..+
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCCEEEEECCCCEEEEEcCCCc
Confidence 999998899999999999998764
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=1.7e-13 Score=135.12 Aligned_cols=273 Identities=10% Similarity=0.043 Sum_probs=185.5
Q ss_pred CCeEEEEeCCCcceeEEee---------eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC
Q psy3640 292 DKTLKLWASAKEECIQTYR---------GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS 362 (616)
Q Consensus 292 dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~ 362 (616)
+++|.++|..+++....+. .....+++. ++..+++...++.|.+||..+++.+.++. .......+++++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence 7899999999988765431 112334553 34455555567899999999999988885 356678999988
Q ss_pred CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc-----cceeEEEEccCCCEEEEEe-CCCcEEE
Q psy3640 363 DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS-----QEISNCLFNFSNSMIASSS-LDGTAKL 436 (616)
Q Consensus 363 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~i 436 (616)
++...++...++.|.+||.. +......+.... .....+++ .++.++++.. .++.|.+
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~----------------t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPK----------------TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETT----------------TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEE
T ss_pred CCeEEEEECCCCeEEEEECC----------------CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEE
Confidence 88544444389999999987 333333333222 13455666 3444444443 4889999
Q ss_pred EeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEecCCceeeeeEEeccCCCeeeEEEEEE
Q psy3640 437 WDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD----------QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF 506 (616)
Q Consensus 437 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 506 (616)
+|..+++....+.. ......++++|+|++++++..+ +.|.++|..+... ...+..... .....+++
T Consensus 157 iD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g--~~p~~la~ 232 (328)
T 3dsm_A 157 IDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLG--DWPSEVQL 232 (328)
T ss_dssp EETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTT--CCCEEEEE
T ss_pred EECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCC--CCceeEEE
Confidence 99999998887764 3345789999999877776554 7899999887643 222222111 23567999
Q ss_pred cCCCCEEEEEeCCCcEEEEecCCceEEeEE-eeccccCEEEEEEecC-CCEEEEE----ECCCcEEEecCCcCeeeeEec
Q psy3640 507 DYSGSKLATASSDQTAKLWTVGGAVELLQT-FYGHSNEVSKVSFHPT-GKLVLSG----SQDTTCRLWSTESGECIQVLK 580 (616)
Q Consensus 507 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd-g~~l~s~----s~dg~i~iwd~~~~~~~~~~~ 580 (616)
+|+++.|+++.. .|.+||..+....... ..........++++|+ +++.++. ..++.|.+||.. |+.+..+.
T Consensus 233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 233 NGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred ecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 999999988765 8999999765321111 1112456889999995 5555555 568899999998 99888886
Q ss_pred cCcccEEEEEE
Q psy3640 581 AHEDDVFSCGF 591 (616)
Q Consensus 581 ~h~~~V~~l~~ 591 (616)
.... -..++|
T Consensus 310 ~G~~-P~~~~~ 319 (328)
T 3dsm_A 310 VGII-PGAFCW 319 (328)
T ss_dssp EEES-EEEEEE
T ss_pred eccC-cceEEE
Confidence 4333 345555
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.64 E-value=4.6e-14 Score=139.21 Aligned_cols=253 Identities=9% Similarity=-0.011 Sum_probs=183.5
Q ss_pred CCCcEEEEECCCCcEEEEEe------ccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeC
Q psy3640 207 YDRTCKLWDIKSGHEICTYR------GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 280 (616)
Q Consensus 207 ~dg~i~iwd~~~~~~~~~~~------~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~ 280 (616)
.+++|.+||.++++....+. ........+++..+.-+++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~- 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL- 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE-
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe-
Confidence 37899999999998765442 12234677888644335577778999999999999988886 45678899998
Q ss_pred CCCCEEEEEECCCeEEEEeCCCcceeEEeee--------ceeeEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeec
Q psy3640 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRG--------HSAEVTFSPDQSTFCSCS--MDHTARIFNTNSGQEMHTLKA 350 (616)
Q Consensus 281 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~ 350 (616)
+++..+++...++.|.+||..+++....+.. ....+++ ++..++++. .++.|.++|..+++....+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 5564444444899999999999988776653 2345666 455555555 488999999999998887765
Q ss_pred CCcCEEEEEEcCCCCEEEEEECC----------CcEEEEecccccCCcccccccccccCCcceEEEecC-ccceeEEEEc
Q psy3640 351 HTGPVISLQFSSDRNMLITGSFD----------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-SQEISNCLFN 419 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 419 (616)
. .....++++|+|+++++...+ +.|.++|.. .......+... ......++++
T Consensus 171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~----------------t~~v~~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE----------------TFTVEKQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT----------------TTEEEEEEECCTTCCCEEEEEC
T ss_pred C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC----------------CCeEEEEEecCCCCCceeEEEe
Confidence 3 345788999999877666554 789999986 44444333322 2367889999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeEEEE--eecCCCCEEEEEEcCC-CCEEEEE----eCCCcEEEEecC
Q psy3640 420 FSNSMIASSSLDGTAKLWDVRTMCCFYT--LKNHEDEVLDIAFDYS-GSKLATA----SSDQTANLWTVG 482 (616)
Q Consensus 420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~-~~~l~~~----~~dg~i~iwd~~ 482 (616)
|+++.++++.. .|.+||..+++.... +.........++++|+ +..+++. ..++.|.+||..
T Consensus 234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 234 GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999888765 899999988765321 1112467899999994 5555555 567899999987
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.64 E-value=1.5e-12 Score=130.20 Aligned_cols=272 Identities=8% Similarity=-0.051 Sum_probs=183.3
Q ss_pred cCCCCEEEEEeC--CC---cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEeccc
Q psy3640 319 SPDQSTFCSCSM--DH---TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWDIQY 383 (616)
Q Consensus 319 ~~~~~~l~~~~~--dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd~~~ 383 (616)
.|+++.+++... .+ .|.++|..+++.+..+.....+ .++++|||++++++. .++.|.+||..
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~- 105 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV- 105 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-
Confidence 356666665543 22 7899999999988887754444 999999999999886 36789999986
Q ss_pred ccCCcccccccccccCCcceEEEecC-------ccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEE-eecCCC
Q psy3640 384 QFGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLFNFSNSMIASSSL--DGTAKLWDVRTMCCFYT-LKNHED 453 (616)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~ 453 (616)
..+.+..+... ......++++|++++++++.. ++.|.++| .+++.+.. +... .
T Consensus 106 ---------------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~ 168 (373)
T 2mad_H 106 ---------------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T 168 (373)
T ss_pred ---------------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c
Confidence 33333332211 123457899999999998874 47899999 99988877 5432 2
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeEE--eccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 454 EVLDIAFDYSG-SKLATASSDQTANLWTVGGAVELLQTF--YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA 530 (616)
Q Consensus 454 ~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 530 (616)
. +.+.|++ ..+++.+.||.+.+++. .+....... ........-.....+.+++..++..+..+.+.+.|+...
T Consensus 169 ~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 169 C---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred e---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 2 3444544 45667778999999999 543331111 000111111123456666666665567889999998653
Q ss_pred e-EEeEEeec----------cccCEEEEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCcccEEEE
Q psy3640 531 V-ELLQTFYG----------HSNEVSKVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHEDDVFSC 589 (616)
Q Consensus 531 ~-~~~~~~~~----------h~~~v~~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~V~~l 589 (616)
. .....+.- .......++++|+++.+.++.. ++.|.++|..+++.+.++... ....++
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i 323 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAI 323 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeE
Confidence 2 22222211 1122445789999998887653 357999999999999988643 357899
Q ss_pred EEeeCCC-EEEEee-CCCcEEEcccCCC
Q psy3640 590 GFNYNGD-TIITAS-KDNTCCIWRSMNR 615 (616)
Q Consensus 590 ~~s~~~~-~l~t~s-~Dg~i~vW~~~~~ 615 (616)
+|+|||+ +++++. .++.|.+||+.+.
T Consensus 324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 324 SVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 9999999 777777 5899999999875
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.64 E-value=2.4e-13 Score=133.96 Aligned_cols=292 Identities=12% Similarity=0.074 Sum_probs=197.6
Q ss_pred CCCCCEEEEEEC-----CCeEEEEeCCCcceeEEeee-ceeeEEEcCCCCEEEEEe----------CCCcEEEEECCCCc
Q psy3640 280 EPYGDKILTGSF-----DKTLKLWASAKEECIQTYRG-HSAEVTFSPDQSTFCSCS----------MDHTARIFNTNSGQ 343 (616)
Q Consensus 280 ~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~----------~dg~i~i~d~~~~~ 343 (616)
+|+++.++.... ++.|.+.|..+++.+.++.. ....++++|++++++++. .++.|.+||..+.+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 378888888766 67999999999999888763 233489999999988775 35789999999999
Q ss_pred eeEEeecCC-------cCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640 344 EMHTLKAHT-------GPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414 (616)
Q Consensus 344 ~~~~~~~~~-------~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 414 (616)
.+..+.... .....++++|||++++++.. ++.|.++|+. ..+.+..+.....
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~----------------t~~vv~tI~v~g~--- 181 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE----------------GKAFKRMLDVPDC--- 181 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT----------------TTEEEEEEECCSE---
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC----------------CCcEEEEEECCCc---
Confidence 988875422 23467899999999998874 6899999997 5555555532211
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCEE-EEEEc-CCCCEEEEEeCCCcEEEEecCCcee-
Q psy3640 415 NCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNH----EDEVL-DIAFD-YSGSKLATASSDQTANLWTVGGAVE- 486 (616)
Q Consensus 415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~- 486 (616)
...+....+.+++.+.||.+.+.++.+ ++........ ..++. ...|. ++|++++ .+.+|.+.+.|..+...
T Consensus 182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~ 260 (386)
T 3sjl_D 182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK 260 (386)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence 223334456777888888888888876 5443221111 12221 23554 5665544 56689999999976432
Q ss_pred eeeEEe--c-----cCCCeeeEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCceEEeEEeeccccCEEEEEE
Q psy3640 487 LLQTFY--G-----HSNEVSKVLDIAFDYSGSKLATASS----------DQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549 (616)
Q Consensus 487 ~~~~~~--~-----~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~ 549 (616)
....+. . ..........++++++++.+++... .+.|.+.|..+.........+ .++..+++
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lav 338 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINV 338 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEE
Confidence 222221 0 0000111224677999998888653 257999999986444433333 36889999
Q ss_pred ecCCC-EEEEEE-CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeC
Q psy3640 550 HPTGK-LVLSGS-QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594 (616)
Q Consensus 550 spdg~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~ 594 (616)
+||++ +|+++. .++.|.++|..+++.+.++..... -..+.+++|
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d 384 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GPQVITTAD 384 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence 99997 666654 589999999999999998875432 334566665
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=6.7e-14 Score=133.98 Aligned_cols=238 Identities=5% Similarity=-0.052 Sum_probs=170.7
Q ss_pred ceEEEEECCCCCEEE-EEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640 189 PLTNITFDKFGTRCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR 267 (616)
Q Consensus 189 ~i~~v~~s~~g~~la-sgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~ 267 (616)
...+++++++|++++ +.+.++.|.+||..++........+...+.++++++++.++.+..++.|.+||..+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence 788999999999777 5467889999997665443222334457889999999997766668899999987665432222
Q ss_pred CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640 268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQE 344 (616)
Q Consensus 268 ~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 344 (616)
.....+..+++. ++++.+++...++.|.+|+..+........ .....++++++++.+++...++.|.+||......
T Consensus 105 ~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 105 DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred CCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 333678999998 678877777778999999866554432221 2345679999999777777788999999887665
Q ss_pred eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 345 ~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 424 (616)
......+...+.+++++++|.++++...++.|.+|+... .........+...+..+++++++++
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~p~~i~~~~~g~l 247 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS----------------TTSTVLPFTGLNTPLAVAVDSDRTV 247 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC----------------SCCEECCCCSCSCEEEEEECTTCCE
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC----------------CcceeeccCCCCCceeEEECCCCCE
Confidence 443333446789999999997777777788999999752 1111111123356788999999998
Q ss_pred EEEEeCCCcEEEEeCCCCe
Q psy3640 425 IASSSLDGTAKLWDVRTMC 443 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~~ 443 (616)
+++...++.|++++....+
T Consensus 248 ~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 248 YVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEGGGTEEEEECCCGGG
T ss_pred EEEECCCCEEEEEcCCCcc
Confidence 8888889999999987543
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=5.2e-13 Score=131.53 Aligned_cols=274 Identities=11% Similarity=0.026 Sum_probs=194.4
Q ss_pred EEECCCCCEEEEEEC-----CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEe
Q psy3640 193 ITFDKFGTRCLTGSY-----DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWD 256 (616)
Q Consensus 193 v~~s~~g~~lasgs~-----dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd 256 (616)
....|+++++.+... ++.|.+.|..+++.+.++..-..+ . ++++||++.+ ++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455799999988876 679999999999999999866666 3 9999999944 333 367899999
Q ss_pred CCCCceEEEeeCCC-------CcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEE
Q psy3640 257 IKSGHEICTYRGHQ-------NVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCS 327 (616)
Q Consensus 257 ~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~ 327 (616)
..+++.+..+.-.. .....++|+ +++++++++.. ++.|.++|+.+++.+.++........+....+.+++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM 194 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence 99999988875321 235578998 88999888874 689999999999999888654433334445567778
Q ss_pred EeCCCcEEEEECCC-CceeEEeecC----CcCEE-EEEEc-CCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640 328 CSMDHTARIFNTNS-GQEMHTLKAH----TGPVI-SLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 328 ~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.|.+.|......
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~-------------- 259 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA-------------- 259 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--------------
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--------------
Confidence 88899988888876 5543222111 12221 23554 5665444 66689999999863210
Q ss_pred cceEEEe----------cCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640 401 KPIHILT----------GHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460 (616)
Q Consensus 401 ~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 460 (616)
.....+. ........++++++++.++.... .+.|.++|+.+++.+..+.. ..++.++++
T Consensus 260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lav 338 (386)
T 3sjl_D 260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINV 338 (386)
T ss_dssp EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEE
T ss_pred eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEE
Confidence 0010010 01223445777888888877653 25799999999999988874 346889999
Q ss_pred cCCCC-EEEEEe-CCCcEEEEecCCce
Q psy3640 461 DYSGS-KLATAS-SDQTANLWTVGGAV 485 (616)
Q Consensus 461 ~~~~~-~l~~~~-~dg~i~iwd~~~~~ 485 (616)
+++++ +|+++. .++.+.++|..+..
T Consensus 339 s~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 339 SQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp CSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 99996 666654 58999999998764
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=3.4e-12 Score=127.63 Aligned_cols=283 Identities=12% Similarity=0.007 Sum_probs=191.9
Q ss_pred EECCCCCEEEEEEC--CC---cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeC
Q psy3640 194 TFDKFGTRCLTGSY--DR---TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDI 257 (616)
Q Consensus 194 ~~s~~g~~lasgs~--dg---~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~ 257 (616)
...|+++++.+... .. +|.++|..+++.+.++.....+ .++++||++.+ ++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578887777654 22 8899999999998888765555 99999999965 332 3678999999
Q ss_pred CCCceEEEeeCC-------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEE-eeeceeeEEEcCCC-CEEE
Q psy3640 258 KSGHEICTYRGH-------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQT-YRGHSAEVTFSPDQ-STFC 326 (616)
Q Consensus 258 ~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~-~~l~ 326 (616)
.+.+.+..+... ......++|+ |++++|+++.. ++.|.++| .+++.+.. +..... +.+.|++ ..++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~ 181 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFY 181 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEE
Confidence 999888776532 1234588999 88999998874 57899999 99988877 654332 4455554 4566
Q ss_pred EEeCCCcEEEEECCCCceeEEee-----cCCcCE-EEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLK-----AHTGPV-ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
+.+.||.+.++|. +++...... ....++ ....+.+++..++..+..+.+.+.|+......... ......
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~----~~~~~~ 256 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA----PIDALS 256 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee----eeeecC
Confidence 7778999999999 887664322 111221 23456666665555557889999998521100000 000000
Q ss_pred cceEEEecCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEE
Q psy3640 401 KPIHILTGHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLAT 469 (616)
Q Consensus 401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~ 469 (616)
...............+.++++++.++++.. ++.|.++|+.+++.+.++. ......+++|+|+|+ ++++
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v 335 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYA 335 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEE
Confidence 000000001222344778999988877653 3579999999999998886 344689999999999 7777
Q ss_pred Ee-CCCcEEEEecCCceee
Q psy3640 470 AS-SDQTANLWTVGGAVEL 487 (616)
Q Consensus 470 ~~-~dg~i~iwd~~~~~~~ 487 (616)
+. .++.|.++|..+....
T Consensus 336 ~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 336 LSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred EcCCCCeEEEEECCCCCEE
Confidence 76 5899999999876443
No 199
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=2.5e-14 Score=156.54 Aligned_cols=240 Identities=9% Similarity=-0.036 Sum_probs=161.7
Q ss_pred CCcCEEEEEEcCCCCEEEEE-----ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc--eeEEEEccCCC
Q psy3640 351 HTGPVISLQFSSDRNMLITG-----SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE--ISNCLFNFSNS 423 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~ 423 (616)
|...+.+++|+|||++|+.+ +.+..|++||+... .... ..+... ...++|+|+++
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg----------------~~~~--~~~~~~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG----------------EWSK--VDVIEGGKYATPKWTPDSK 180 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC----------------CBCS--SCCBSCCTTCCCEECTTSS
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC----------------CCcC--CcccCcccccceEEecCCC
Confidence 44568899999999999843 34568999999732 2210 011111 26789999999
Q ss_pred EEEEEeCCCc-------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecC
Q psy3640 424 MIASSSLDGT-------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQ----TANLWTVG 482 (616)
Q Consensus 424 ~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~ 482 (616)
.|+.++.+.. |++|++.++. .+.....+...+.++.|+|+|++|+..+.++ .+.+|+..
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 9999998766 9999998875 3333344556789999999999998887665 56666654
Q ss_pred CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe---CCCcEEEEecCCceE-EeEEeecc--ccCEEEEEEecCCCEE
Q psy3640 483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS---SDQTAKLWTVGGAVE-LLQTFYGH--SNEVSKVSFHPTGKLV 556 (616)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~l~~spdg~~l 556 (616)
++ ....+..+... .....+ ++|.+++... .++.|.+||+.++.. ....+..| ...+..++|+ ++.++
T Consensus 261 ~~--~~~~l~~~~~~---~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv 333 (695)
T 2bkl_A 261 EK--DFRLLVKGVGA---KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS 333 (695)
T ss_dssp CS--SCEEEEECSSC---CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred CC--ceEEeecCCCc---eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence 33 22223332222 223344 5666444443 257899999876421 01223333 4468888998 77788
Q ss_pred EEEECCCcEEEecCC-cCeeeeEeccC-cccEEEEEEeeCCCEEEE----eeCCCcEEEcccCCC
Q psy3640 557 LSGSQDTTCRLWSTE-SGECIQVLKAH-EDDVFSCGFNYNGDTIIT----ASKDNTCCIWRSMNR 615 (616)
Q Consensus 557 ~s~s~dg~i~iwd~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~l~t----~s~Dg~i~vW~~~~~ 615 (616)
++...|+..+||.+. +++....+..+ .+.|..++++|+++.++. ....++|++||+.++
T Consensus 334 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 334 LEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 889999998888665 46666666655 667888899999987773 334578999998764
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=3.3e-13 Score=129.13 Aligned_cols=210 Identities=10% Similarity=0.002 Sum_probs=166.2
Q ss_pred CCCCEEEEECCCcEEEEeCCCCceEEEeeCCC-CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec----e
Q psy3640 239 EPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----S 313 (616)
Q Consensus 239 ~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~ 313 (616)
|+..+++++.++.|.+||.++|+.+..+..+. ..+.++.++ |+++.++ +.++.|..||. +++.+..+..+ .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 44446688999999999999999999998776 478889998 7898888 45788999999 89888888753 2
Q ss_pred eeEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeec------CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccC
Q psy3640 314 AEVTFSPDQSTFCSCSM-DHTARIFNTNSGQEMHTLKA------HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG 386 (616)
Q Consensus 314 ~~v~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~ 386 (616)
..+.+.++++.+++.+. ++.+..+|. +|+.+..+.. +......+++.++|+++++...++.|..||.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~----- 153 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP----- 153 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT-----
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC-----
Confidence 34578999999999887 788888886 6777776642 2224456678899999999999999999997
Q ss_pred CcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC------CCEEEEEE
Q psy3640 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE------DEVLDIAF 460 (616)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~ 460 (616)
.++.+..+... .....+...++++.++++..++.|..+|..+++.+.++.... ..+..++.
T Consensus 154 ------------~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~ 220 (276)
T 3no2_A 154 ------------NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFP 220 (276)
T ss_dssp ------------TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEE
T ss_pred ------------CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceE
Confidence 34444554443 345567778999999999988899999999999999987432 22788888
Q ss_pred cCCCCEEEEEe
Q psy3640 461 DYSGSKLATAS 471 (616)
Q Consensus 461 ~~~~~~l~~~~ 471 (616)
.++|..+++..
T Consensus 221 ~~~G~i~v~~~ 231 (276)
T 3no2_A 221 LQNGGLYICNW 231 (276)
T ss_dssp CTTSCEEEEEE
T ss_pred cCCCCEEEEec
Confidence 99998888764
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.62 E-value=3.1e-12 Score=124.24 Aligned_cols=272 Identities=9% Similarity=0.009 Sum_probs=182.4
Q ss_pred eEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~ 393 (616)
.+++.+++...++...++.|..||.. ++... .+......+.++++++++++.++...++.|..+|.. .
T Consensus 24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g--------- 92 (300)
T 2qc5_A 24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G--------- 92 (300)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---------
T ss_pred eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C---------
Confidence 45566666665555556777777766 44332 122234578899999999877776667889999864 1
Q ss_pred cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY-TLKNHEDEVLDIAFDYSGSKLATASS 472 (616)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~ 472 (616)
.............+..+++.+++.++++...++.|..+|.. ++... .+......+..++++++++..++...
T Consensus 93 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 165 (300)
T 2qc5_A 93 ------GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ 165 (300)
T ss_dssp ------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred ------CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence 11111112233567889999999888877778899999987 54432 22334567899999999997666666
Q ss_pred CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640 473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT 552 (616)
Q Consensus 473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 552 (616)
++.|..++...... . +. .......+..+++++++.+.++....+.|.+|+.... ........+...+.+++++++
T Consensus 166 ~~~i~~~~~~g~~~--~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 166 NNSIGRITNTGKLE--E-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp TTEEEEECTTCCEE--E-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECST
T ss_pred CCeEEEECCCCcEE--E-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEEEECCCCCCCceEEEECCC
Confidence 78899999843221 1 21 1122245678999999988777777888999998432 222223344567899999999
Q ss_pred CCEEEEEECCCcEEEecCCcCeeee-EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 553 GKLVLSGSQDTTCRLWSTESGECIQ-VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 553 g~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
|++.++...++.|..|+. +++... .+......+.++++.++|++.++.. . .|..++.
T Consensus 241 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 241 SEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 987776666789999998 454432 2333445688899999998766655 4 5666654
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.61 E-value=5e-12 Score=122.75 Aligned_cols=273 Identities=10% Similarity=-0.011 Sum_probs=191.2
Q ss_pred cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE-EEeccCCcEEEEEEcCCCCEEEEE-CCCcEEEEeCCCCce
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGCLTGS-YDRTCKLWDIKSGHE 262 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~-~~~~h~~~I~~l~fs~~~~lls~s-~d~~I~iwd~~~~~~ 262 (616)
.....+.+++++++|+..++...++.|.+||.. ++... .+..+...+.++++.+++.+..+. .++.|..||.. ++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 455688999999999988877778999999988 55443 222344679999999999977555 47889999988 654
Q ss_pred EE-EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE-ee---eceeeEEEcCCCCEEEEEeCCCcEEEE
Q psy3640 263 IC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-YR---GHSAEVTFSPDQSTFCSCSMDHTARIF 337 (616)
Q Consensus 263 ~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~ 337 (616)
.. .+......+.++++. ++++.+++...++.|..++.. ++.... +. .....+++.++++..++...++.|..+
T Consensus 95 ~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 32 223345678999998 778888777768899999987 554422 22 234567899999966666667889999
Q ss_pred ECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEE
Q psy3640 338 NTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC 416 (616)
Q Consensus 338 d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 416 (616)
|. +++.... ...+...+.++++++++++.++....+.|.+|+.. ..............+..+
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~----------------g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT----------------GEISEYDIPTPNARPHAI 235 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT----------------CCEEEEECSSTTCCEEEE
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC----------------CcEEEEECCCCCCCceEE
Confidence 98 5554432 22344568999999999877766667789999863 111111122344567889
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCeEE-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 417 LFNFSNSMIASSSLDGTAKLWDVRTMCCF-YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481 (616)
Q Consensus 417 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 481 (616)
++.+++.+.++...++.|..||. ++... ..+......+.+++++++|.+.++.. . .|..++.
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 99999987777666789999998 44332 22333345688999999988665544 4 6666654
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.59 E-value=2.4e-13 Score=149.79 Aligned_cols=240 Identities=12% Similarity=0.048 Sum_probs=163.1
Q ss_pred cCEEEEEEcCCCCEEEEEECC-----CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640 353 GPVISLQFSSDRNMLITGSFD-----SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 427 (616)
..+..++|+|||++|+.++.+ ..|++||+. .+..... ..+...+..++|+|+ +.|+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----------------tg~~~~~-~~~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----------------DGKPLAD-ELKWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----------------TCCEEEE-EEEEEESCCCEESTT-SEEEE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------CCCCCCc-cCCCceeccEEEECC-CEEEE
Confidence 467889999999999887654 359999997 3333222 112222457899999 98888
Q ss_pred EeCCCc--------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCc
Q psy3640 428 SSLDGT--------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGA 484 (616)
Q Consensus 428 ~~~dg~--------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 484 (616)
++.++. |++|++.++. .+.....+...+.++.|+|+|++|+..+.++ .+++||+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 887654 8999997764 2222222334588999999999988877544 7999998765
Q ss_pred eee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCCc-eEEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 485 VEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGGA-VELLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 485 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
... ...+..+.... ... ++|+|+.|+..+.+ +.|.+|++.+. ......+..+...+..++++ ++.++++
T Consensus 305 ~~~~~~~l~~~~~~~---~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~ 379 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQ---WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS 379 (741)
T ss_dssp EECCCEEEECSSSSC---EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred CCcccEEecCCCCce---EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence 322 33343333222 122 34899988888764 45999998764 23334444455567778887 5667888
Q ss_pred EECCCcEEEecCC-cCeeeeEecc-CcccEEEEEEeeCCCEEEE----eeCCCcEEEcccCCC
Q psy3640 559 GSQDTTCRLWSTE-SGECIQVLKA-HEDDVFSCGFNYNGDTIIT----ASKDNTCCIWRSMNR 615 (616)
Q Consensus 559 ~s~dg~i~iwd~~-~~~~~~~~~~-h~~~V~~l~~s~~~~~l~t----~s~Dg~i~vW~~~~~ 615 (616)
...|+..+||.+. +++....+.. +.+.|..++++|+++.|+. ....++|++||+.++
T Consensus 380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 8889988777654 4666666664 3567889999999886652 233488999998764
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.57 E-value=2.3e-12 Score=126.24 Aligned_cols=240 Identities=12% Similarity=0.117 Sum_probs=170.9
Q ss_pred cccCCcceEEEEECCCCCEEEE-------EECCCcEEEEECCCCcEEEEEe----ccCCcEEEEEEcCC-CCEEEEECCC
Q psy3640 183 LKSHLLPLTNITFDKFGTRCLT-------GSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEP-YGCLTGSYDR 250 (616)
Q Consensus 183 l~~h~~~i~~v~~s~~g~~las-------gs~dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~fs~~-~~lls~s~d~ 250 (616)
+........+++|+++|+.+++ +..++.|.+||..+++...... ++...+.+++++++ +.++.++..+
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 3445556789999999988888 6778899999988887643322 25567999999999 8877777666
Q ss_pred cEEEEeCCCCceEEE-eeC----CCCcEEEEEEeCCCCCEEEEEECC---------------CeEEEEeCCCcceeEEee
Q psy3640 251 TCKLWDIKSGHEICT-YRG----HQNVVYAVAFSEPYGDKILTGSFD---------------KTLKLWASAKEECIQTYR 310 (616)
Q Consensus 251 ~I~iwd~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~ 310 (616)
.|.+||.+ ++.... ... ....+.++++. ++++.+++...+ +.|..|+.. ++......
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 89999998 765433 221 12357899998 778887777655 567777766 54433222
Q ss_pred --eceeeEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----eEEeecCC-cCEEEEEEcCCCCEEEEEECCCcE
Q psy3640 311 --GHSAEVTFS----PDQSTFCSC-SMDHTARIFNTN-SGQE-----MHTLKAHT-GPVISLQFSSDRNMLITGSFDSSI 376 (616)
Q Consensus 311 --~~~~~v~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~-----~~~~~~~~-~~v~~l~~~~~~~~l~~g~~dg~i 376 (616)
.....++++ |+++.++++ ..++.|.+||.. +++. ...+..+. ..+..++++++|++.++...++.|
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i 249 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI 249 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence 234567899 999766555 467899999986 4432 22333333 567889999999988888788999
Q ss_pred EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q psy3640 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS-SLDGTAKLWDVRT 441 (616)
Q Consensus 377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 441 (616)
.+||.. +......+..+...+.+++++++++.|+++ ..++.|..|++..
T Consensus 250 ~~~d~~----------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPD----------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTT----------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEcCC----------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999975 234444445555778899999999955544 4567899998764
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=4.2e-12 Score=124.32 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=164.7
Q ss_pred CcCEEEEEEcCCCCEEEE-------EECCCcEEEEecccccCCcccccccccccCCcceEEE----ecCccceeEEEEcc
Q psy3640 352 TGPVISLQFSSDRNMLIT-------GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL----TGHSQEISNCLFNF 420 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~ 420 (616)
-....+++|+++++++++ +..++.|.+||... ....... .++...+..+++++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------g~~~~~~~~~~~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------GKKTVICKPEVNGYGGIPAGCQCDR 80 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------CCEEEEECCEETTEECCEEEEEECS
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------CcEEEEEecccCCCCCCCceEEEec
Confidence 345689999999988877 56788999999752 2211111 12345688899999
Q ss_pred C-CCEEEEEeCCCcEEEEeCCCCeEEEE-eec----CCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEE
Q psy3640 421 S-NSMIASSSLDGTAKLWDVRTMCCFYT-LKN----HEDEVLDIAFDYSGSKLATASSD---------------QTANLW 479 (616)
Q Consensus 421 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~l~~~~~d---------------g~i~iw 479 (616)
+ ++++++. ..+.|.+||.. ++.... ... ....+.+++++++|+++++...+ +.+..|
T Consensus 81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 9 6555544 44579999988 665433 221 12358899999999887776554 466667
Q ss_pred ecCCceeeeeEEeccCCCeeeEEEEEEc----CCCCEEEEE-eCCCcEEEEecC-Cce----EEeEEeeccc-cCEEEEE
Q psy3640 480 TVGGAVELLQTFYGHSNEVSKVLDIAFD----YSGSKLATA-SSDQTAKLWTVG-GAV----ELLQTFYGHS-NEVSKVS 548 (616)
Q Consensus 480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~dg~i~vwd~~-~~~----~~~~~~~~h~-~~v~~l~ 548 (616)
+... ....... . ......++++ |+++.++++ ..++.|.+|+.. .+. .....+..+. ..+..++
T Consensus 159 ~~~g--~~~~~~~-~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 159 TTDG--QMIQVDT-A---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp CTTS--CEEEEEE-E---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred CCCC--CEEEecc-C---CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 6552 2211111 1 1224568899 999766655 467899999975 221 1222333343 5688999
Q ss_pred EecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE-EEeeCCCcEEEcccCC
Q psy3640 549 FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI-ITASKDNTCCIWRSMN 614 (616)
Q Consensus 549 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~t~s~Dg~i~vW~~~~ 614 (616)
++++|++.++...++.|.+||.++++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999988888888999999998888887777777789999999999955 5555668899998764
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.55 E-value=2.4e-12 Score=129.22 Aligned_cols=271 Identities=10% Similarity=0.048 Sum_probs=187.4
Q ss_pred CCCCEEEEEeCC-----CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEecccc
Q psy3640 320 PDQSTFCSCSMD-----HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWDIQYQ 384 (616)
Q Consensus 320 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd~~~~ 384 (616)
++++.+++.... +.|.++|..+++.+..+..-..+ .++++||+++++++. .++.|.++|..
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-- 157 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-- 157 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--
Confidence 466666665543 68999999999999998866666 899999999888876 36789999987
Q ss_pred cCCcccccccccccCCcceEEEecC-------ccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEEeecCCCCE
Q psy3640 385 FGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLFNFSNSMIASSSL--DGTAKLWDVRTMCCFYTLKNHEDEV 455 (616)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v 455 (616)
+.+.+..+.-. ......+.++|++++++++.. ++.|.+.|+.+++.+.++.....
T Consensus 158 --------------t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-- 221 (426)
T 3c75_H 158 --------------TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-- 221 (426)
T ss_dssp --------------TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--
T ss_pred --------------CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--
Confidence 55555444321 123457899999999999874 57899999999999888874321
Q ss_pred EEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeee---EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640 456 LDIAFDYSG-SKLATASSDQTANLWTVGGAVELLQ---TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531 (616)
Q Consensus 456 ~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 531 (616)
....|++ ..+++.+.||.+.+.+...+..... .+.....+ ....+.+++++..++.....+.+.+.|.....
T Consensus 222 --~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p--~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 222 --YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL--LINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp --EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC--BCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred --eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc--eeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 2223332 4556666777777777733322111 01111111 01134678999988888889999999986532
Q ss_pred EEe-EEeec----------cccCEEEEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCcccEEEEE
Q psy3640 532 ELL-QTFYG----------HSNEVSKVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHEDDVFSCG 590 (616)
Q Consensus 532 ~~~-~~~~~----------h~~~v~~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~V~~l~ 590 (616)
..+ ..+.- .......++++|+++++.+... ++.|.+.|..+++.+.++.... ....++
T Consensus 298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia 376 (426)
T 3c75_H 298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSIN 376 (426)
T ss_dssp EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE
T ss_pred eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEE
Confidence 211 11110 0111223689999987777642 3579999999999999987543 478899
Q ss_pred EeeCCC-EEEEee-CCCcEEEcccCCC
Q psy3640 591 FNYNGD-TIITAS-KDNTCCIWRSMNR 615 (616)
Q Consensus 591 ~s~~~~-~l~t~s-~Dg~i~vW~~~~~ 615 (616)
|+|||+ +++++. .++.|.|+|+.+.
T Consensus 377 ~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 377 VSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp ECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 999999 888888 5899999999875
No 207
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=1e-12 Score=144.78 Aligned_cols=271 Identities=12% Similarity=0.035 Sum_probs=175.4
Q ss_pred CCCCCEEEEEECCCc---EEEEEC--C---CCcEEEEE------eccCCcEEEEEEcCCCCEEE-E-ECC----CcEEEE
Q psy3640 196 DKFGTRCLTGSYDRT---CKLWDI--K---SGHEICTY------RGHQNVVYAVAFSEPYGCLT-G-SYD----RTCKLW 255 (616)
Q Consensus 196 s~~g~~lasgs~dg~---i~iwd~--~---~~~~~~~~------~~h~~~I~~l~fs~~~~lls-~-s~d----~~I~iw 255 (616)
+|+|++++....++. -.+|-. . .++....+ .+|...+..++|||||+.++ + +.+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 389999887665433 455544 3 34433322 23445788999999999652 2 222 369999
Q ss_pred eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCe--------------EEEEeCCCcce--eEEeee--c---ee
Q psy3640 256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT--------------LKLWASAKEEC--IQTYRG--H---SA 314 (616)
Q Consensus 256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~~~~~--~---~~ 314 (616)
|+.+++.+.... +...+..++|+ |+ +.|+.++.++. |++|++.++.. ...+.. + ..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~ 271 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH 271 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred ECCCCCCCCccC-CCceeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence 999998765321 21223578899 77 88888887654 88999987752 222322 1 34
Q ss_pred eEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEeecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEeccc
Q psy3640 315 EVTFSPDQSTFCSCSMDH-----TARIFNTNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQY 383 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~ 383 (616)
.+.|+|||++++..+.++ .|++||+.++ +....+..+...+.... +|+|+.|+..+.+ +.|.+||+..
T Consensus 272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~ 350 (741)
T 1yr2_A 272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG 350 (741)
T ss_dssp EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence 568999999998877544 7999999877 31455555555555553 4889988888764 4488898752
Q ss_pred ccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEEEeec-CCCCEEEEEEc
Q psy3640 384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR-TMCCFYTLKN-HEDEVLDIAFD 461 (616)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~l~~~ 461 (616)
. .......+..+...+..+.+. ++.++++...++..++|.+. ++.....+.. ..+.+..++++
T Consensus 351 ~--------------~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s 415 (741)
T 1yr2_A 351 S--------------TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGR 415 (741)
T ss_dssp S--------------SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECC
T ss_pred C--------------ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecC
Confidence 1 012223333444456667776 56678888888877766543 4555566654 35678899999
Q ss_pred CCCCEEEEEe----CCCcEEEEecCCce
Q psy3640 462 YSGSKLATAS----SDQTANLWTVGGAV 485 (616)
Q Consensus 462 ~~~~~l~~~~----~dg~i~iwd~~~~~ 485 (616)
|+++.++... ..++++.||+.++.
T Consensus 416 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 416 PGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 9988666332 34789999997754
No 208
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.53 E-value=2.6e-09 Score=118.59 Aligned_cols=390 Identities=8% Similarity=0.008 Sum_probs=249.3
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG 268 (616)
Q Consensus 190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~ 268 (616)
|.++..+++|.+.+ |+.++.+..||..+++..... ..+...|.++...+++.+..++.++-+..||..+++.......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecC
Confidence 88898888876555 666556899998877654321 2245679999988888888888776799999888765433221
Q ss_pred -------CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCCCEEEEEeCC
Q psy3640 269 -------HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQSTFCSCSMD 331 (616)
Q Consensus 269 -------h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~~~l~~~~~d 331 (616)
....|.++... +++.+. .|+.+ -|.+|+..+++...... .....+...+++. +..|+.+
T Consensus 254 ~~~~~~l~~~~i~~i~~d-~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMD-SQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp TTCTTSCSCSBEEEEEEC-TTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCccccCCCeEEEEEEc-CCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 23579999887 555544 45555 58889987775443321 1123345566655 5667777
Q ss_pred CcEEEEECCCCceeEEee------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 332 HTARIFNTNSGQEMHTLK------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 332 g~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
+-|..|+..++....... .....|.++...++|+ |..|+.++-|..|+.... .....
T Consensus 330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~----------------~~~~~ 392 (795)
T 4a2l_A 330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ----------------RFTSY 392 (795)
T ss_dssp SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC----------------CEEEE
T ss_pred CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC----------------cEEEE
Confidence 778889876554322111 1245699999988876 556787878999987521 11111
Q ss_pred E--------ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee----cCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640 406 L--------TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK----NHEDEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 406 ~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l~~~~~d 473 (616)
. ......|.+++..+++..|..|+.++-+..||..+++...... .....|.++..+++|.+.+.. .
T Consensus 393 ~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~- 470 (795)
T 4a2l_A 393 TLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L- 470 (795)
T ss_dssp CCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-
T ss_pred ecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-
Confidence 0 0123568888888888867778877789999998876433221 134579999999888765544 4
Q ss_pred CcEEEEecCCceeeeeEEecc----CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee-------cccc
Q psy3640 474 QTANLWTVGGAVELLQTFYGH----SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY-------GHSN 542 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~ 542 (616)
+.+..|+..+.... .+... ......|.++..+++|.+.+... +.+..|+..+... .+. ....
T Consensus 471 ~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~---~~~~~~~~~~l~~~ 543 (795)
T 4a2l_A 471 SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI---QKASILPVSNVTKL 543 (795)
T ss_dssp SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE---EECCCSCSCGGGGS
T ss_pred CceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE---EEecCCCCCCCCCC
Confidence 45888988764221 11111 11224578888998888666544 5688888866422 221 1345
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec--c-CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK--A-HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 543 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~-h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
.|.++...++|++.++. .. -+..||..+++....-. + ....|.++...++|.+.+++ .. -|..|+..+
T Consensus 544 ~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~~~~ 614 (795)
T 4a2l_A 544 FTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GISCFNPET 614 (795)
T ss_dssp CEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEEEEETTT
T ss_pred eeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceEEEcCCC
Confidence 78999999998855543 44 58889987765443211 1 13468888888888766655 34 456666543
No 209
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.52 E-value=7e-12 Score=125.88 Aligned_cols=282 Identities=12% Similarity=0.039 Sum_probs=193.4
Q ss_pred CCCCEEEEEECC-----CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCCC
Q psy3640 197 KFGTRCLTGSYD-----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKSG 260 (616)
Q Consensus 197 ~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~~ 260 (616)
++++++.+.... +.|.++|..+++.+.++..-..+ .++++||++.+ ++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577777766553 69999999999999999866666 89999999944 333 4679999999999
Q ss_pred ceEEEeeCC-------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceeeEEEcCC-CCEEEEEeC
Q psy3640 261 HEICTYRGH-------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAEVTFSPD-QSTFCSCSM 330 (616)
Q Consensus 261 ~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~~~ 330 (616)
+.+..+.-. ......+.|+ +++++++++.. ++.|.+.|+.+++.+.++..... ....|+ ...+++.+.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR 237 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence 998877521 1234578898 88999998874 57899999999999888765332 233343 356667777
Q ss_pred CCcEEEEECCCCceeEEe----ecCCcCE-EEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 331 DHTARIFNTNSGQEMHTL----KAHTGPV-ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~----~~~~~~v-~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
||.+.+.+..+++..... .....++ ..+.+.+++..++..+..+.+.+.|............. ...........
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~-~~~~~~i~~g~ 316 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE-ALTEAERADDW 316 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE-SSCTTTGGGTE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee-ecccccccccc
Confidence 888888888666554321 1111121 23567889888888888899999998521100000000 00000000000
Q ss_pred EecCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEe-CC
Q psy3640 406 LTGHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATAS-SD 473 (616)
Q Consensus 406 ~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~-~d 473 (616)
.......++++++++.+++... ++.|.++|..+.+.+.++.. ......++|+|+++ +++++. .+
T Consensus 317 ---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s 392 (426)
T 3c75_H 317 ---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGT 392 (426)
T ss_dssp ---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred ---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCC
Confidence 0111224688999887777642 35799999999999998863 33588999999999 888888 58
Q ss_pred CcEEEEecCCceee
Q psy3640 474 QTANLWTVGGAVEL 487 (616)
Q Consensus 474 g~i~iwd~~~~~~~ 487 (616)
+.|.++|..+....
T Consensus 393 ~~VsVID~~t~kvv 406 (426)
T 3c75_H 393 QTLHIYDAATGEEL 406 (426)
T ss_dssp TEEEEEETTTCCEE
T ss_pred CeEEEEECCCCCEE
Confidence 99999999887443
No 210
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.51 E-value=7.4e-10 Score=122.99 Aligned_cols=396 Identities=9% Similarity=-0.001 Sum_probs=248.1
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEecc-CCc-EEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe-
Q psy3640 190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH-QNV-VYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY- 266 (616)
Q Consensus 190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h-~~~-I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~- 266 (616)
|.++..+++|...+. +. +.+..||..+++......++ ... |.++...+++.+..++.++.+..||..+++.....
T Consensus 133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~ 210 (795)
T 4a2l_A 133 VNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP 210 (795)
T ss_dssp CCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-
T ss_pred EEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC
Confidence 888998888876554 44 45899998776433211111 123 88898888888888887767999998877654321
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee----------ceeeEEEcCCCCEEEEEeCCCcEEE
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG----------HSAEVTFSPDQSTFCSCSMDHTARI 336 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~l~~~~~dg~i~i 336 (616)
..+...|.++... +++ .+..++.++-+..||..+++....... ....+...+++. +..|+.+ -|.+
T Consensus 211 ~~~~~~i~~i~~d-~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~ 286 (795)
T 4a2l_A 211 ILGTKQIQAILQQ-SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNI 286 (795)
T ss_dssp ---CCCEEEEEEE-ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEE
T ss_pred CCCCCeeEEEEEc-CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhhe
Confidence 1235678888876 444 455566555588999887654433211 123345566665 4455555 5889
Q ss_pred EECCCCceeEEeec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640 337 FNTNSGQEMHTLKA-------HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409 (616)
Q Consensus 337 ~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (616)
||..+++....... ....|.++...++|+ +..|+.++-|..|+.....-.. ... ... ...-.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~--~~~-----~~~---~~~l~ 355 (795)
T 4a2l_A 287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN--IRN-----IPY---KNSLS 355 (795)
T ss_dssp EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE--ECC-----CTT---SSSCS
T ss_pred EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE--EcC-----CCC---CCCCC
Confidence 99887664433211 235799999998876 6667777889999865221000 000 000 00012
Q ss_pred ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--------HEDEVLDIAFDYSGSKLATASSDQTANLWTV 481 (616)
Q Consensus 410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~ 481 (616)
...|.++...+++. +..|+.++-+..||..++........ ....|.+++.++++..|..|+.++.+..|+.
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 34578888877776 45577777799999887654332211 2467999999988885777888778999998
Q ss_pred CCceeeeeEEec--cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee------ccccCEEEEEEecCC
Q psy3640 482 GGAVELLQTFYG--HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY------GHSNEVSKVSFHPTG 553 (616)
Q Consensus 482 ~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~h~~~v~~l~~spdg 553 (616)
.++.. ..+.. .......|.++..+++|.+.+.. . +.+.+|+..+. ....... -....|.++...++|
T Consensus 435 ~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 435 NSGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp TTCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTT-EEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred CCCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCC-eEEEccccccccccCCceEEEEEECCCC
Confidence 76422 11211 11223468888888888765554 4 56888998764 2221111 123578999999888
Q ss_pred CEEEEEECCCcEEEecCCcCeeeeEec-------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 554 KLVLSGSQDTTCRLWSTESGECIQVLK-------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
++.+.. . +-+..|+..+++. .+. .+...|.++...++|.+.++.. . -+..|+..+
T Consensus 510 ~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 510 RLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp CEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred CEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence 765544 4 4588899877765 222 2345699999888888665443 3 467777654
No 211
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.51 E-value=4.3e-11 Score=120.45 Aligned_cols=299 Identities=9% Similarity=0.028 Sum_probs=197.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEecc---------CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640 198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGH---------QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG 268 (616)
Q Consensus 198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h---------~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~ 268 (616)
++..+++++.++.|..+|.++|+.+...... ...+.+.....++.+++++.++.|..+|..+|+.+.....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3678888899999999999999988776642 2334333334466778899999999999999999888765
Q ss_pred CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE------EEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV------TFSPDQSTFCSCSMDHTARIFNTNSG 342 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~l~~~~~dg~i~i~d~~~~ 342 (616)
........... +..++.++.++.+..+|..+++.+..+....... .....+..+++++.++.+..+|..++
T Consensus 132 ~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence 44322222333 5688889999999999999998887765432221 00112457888888999999999999
Q ss_pred ceeEEeecCCcC----EEE---EEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640 343 QEMHTLKAHTGP----VIS---LQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413 (616)
Q Consensus 343 ~~~~~~~~~~~~----v~~---l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 413 (616)
+.+......... +.. +...| .+..+++++.++.+..+|.. +.+....... ...
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~----------------tG~~~w~~~~--~~~ 270 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR----------------SGQIMWKREL--GSV 270 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT----------------TCCEEEEECC--CCE
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC----------------CCcEEeeccC--CCC
Confidence 988776532110 000 11111 34678888889999999986 3333333221 122
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 492 (616)
..+.. ++..++.++.++.+..+|..+++........ ...+..... .+..+++++.+|.+..+|..++........
T Consensus 271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 23332 4677888888999999999999988776522 222222233 256888899999999999988754433322
Q ss_pred ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526 (616)
Q Consensus 493 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd 526 (616)
... ..... ... .+..|++++.+|.+..|+
T Consensus 347 ~~~-~~~~~--~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 347 DSS-GFQTE--PVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTT-CBCSC--CEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCC-cceeC--CEE--ECCEEEEEeCCCEEEEEe
Confidence 111 11110 111 356788899999998886
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.50 E-value=1.3e-11 Score=125.26 Aligned_cols=238 Identities=10% Similarity=0.072 Sum_probs=164.5
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG 432 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 432 (616)
.....++|+++++++++...++.|++||.. .......... ..... ++++++++.++++..++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~----------------~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~ 192 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD----------------DNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG 192 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETT----------------TTEEEEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECC----------------CCEEEEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence 357899999999877777778999999985 3333333222 23333 89999999999988866
Q ss_pred --cEEEEeCCCCeEEEEe----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee--EEEE
Q psy3640 433 --TAKLWDVRTMCCFYTL----KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK--VLDI 504 (616)
Q Consensus 433 --~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~~ 504 (616)
.|.+++...+.....+ ......+.+++++|++..|+.+..++.|..|+..+................. ...+
T Consensus 193 ~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i 272 (409)
T 3hrp_A 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL 272 (409)
T ss_dssp TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence 7999988765443333 2245667889999965566667778899999987653222110011111111 1278
Q ss_pred EEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEeeccc---------------cCEEEEEEecCCCEEEEEE-CCCcEEE
Q psy3640 505 AFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFYGHS---------------NEVSKVSFHPTGKLVLSGS-QDTTCRL 567 (616)
Q Consensus 505 ~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------------~~v~~l~~spdg~~l~s~s-~dg~i~i 567 (616)
+++|+ +.++++-..++.|+.|+.... ...+.++. .....++++|+|+++++-+ .++.|+.
T Consensus 273 a~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~ 349 (409)
T 3hrp_A 273 IYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK 349 (409)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence 99995 555556666889999998764 22233332 3478999999999777777 7899999
Q ss_pred ecCCcCeeeeEeccC---------------cccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 568 WSTESGECIQVLKAH---------------EDDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 568 wd~~~~~~~~~~~~h---------------~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
|++.++... ++.++ -.....++++++|.++++-..++.|+.+++
T Consensus 350 ~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 350 LDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 998788643 34333 245889999999888888888888888765
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.50 E-value=9.2e-11 Score=113.77 Aligned_cols=227 Identities=12% Similarity=0.104 Sum_probs=154.4
Q ss_pred CcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640 352 TGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL 430 (616)
Q Consensus 352 ~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 430 (616)
..-..+..|+++++ ++++...++.|..||.. .... ..+ .....+.+++++++++++++ .
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~- 71 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------TKQV-QRV-TMDAPVSSVALRQSGGYVAT-I- 71 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETT----------------TCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECC----------------CCcE-EEE-eCCCceEEEEECCCCCEEEE-E-
Confidence 34456889999654 55566668899999986 2222 222 23467889999999995554 4
Q ss_pred CCcEEEEeCCCCeEEEEeec----CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeEEeccCCC
Q psy3640 431 DGTAKLWDVRTMCCFYTLKN----HEDEVLDIAFDYSGSKLATASSD---------QTANLWTVGGAVELLQTFYGHSNE 497 (616)
Q Consensus 431 dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~ 497 (616)
++.|.+||..+++....... ....+.+++++|+|+++++.... ..-.+|.+........... .
T Consensus 72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~ 147 (297)
T 3g4e_A 72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----Q 147 (297)
T ss_dssp TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----E
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----c
Confidence 56799999988865433322 12357899999999977654322 2345555443222211111 1
Q ss_pred eeeEEEEEEcCCCCEEEEE-eCCCcEEEEecC--Cce----EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640 498 VSKVLDIAFDYSGSKLATA-SSDQTAKLWTVG--GAV----ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 498 ~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~--~~~----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
......++|+|+++.|+.+ +.++.|.+|++. ++. .....+..+......++++++|++.++...++.|..||.
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 1234578999999977554 557899999973 321 222333334567889999999988888878889999999
Q ss_pred CcCeeeeEeccCcccEEEEEEe-eCCCEEEEee
Q psy3640 571 ESGECIQVLKAHEDDVFSCGFN-YNGDTIITAS 602 (616)
Q Consensus 571 ~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~t~s 602 (616)
++|+.+..+..+...+++++|. |+++.|..++
T Consensus 228 ~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 228 VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 9999999998887789999999 8887665444
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.47 E-value=2.8e-12 Score=127.28 Aligned_cols=272 Identities=8% Similarity=-0.021 Sum_probs=177.2
Q ss_pred cceEEEEECCCCCEEEEEEC--CCcEEEEECCCCcEEEEEe-------ccCCcEEEEEEcCCCCEEEEEC------CCcE
Q psy3640 188 LPLTNITFDKFGTRCLTGSY--DRTCKLWDIKSGHEICTYR-------GHQNVVYAVAFSEPYGCLTGSY------DRTC 252 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~--dg~i~iwd~~~~~~~~~~~-------~h~~~I~~l~fs~~~~lls~s~------d~~I 252 (616)
..+..++++|+|+.+++... ++.++||.+.+++. ..+. .|-..+..+++++++++..... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 78999999999999888642 34355665555543 3221 3456899999999998765543 5799
Q ss_pred EEEeCCCCceEEEeeCC------CCcEEEEEEeCCCCCEEEEEE---CCCeEEEEeCCCcceeEEeeecee----eEEEc
Q psy3640 253 KLWDIKSGHEICTYRGH------QNVVYAVAFSEPYGDKILTGS---FDKTLKLWASAKEECIQTYRGHSA----EVTFS 319 (616)
Q Consensus 253 ~iwd~~~~~~~~~~~~h------~~~V~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~ 319 (616)
.+||+.+++.+..+... ...+..+++++.++..+++-+ .++.|.+||..+++....+.++.. ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999977766532 235688999843454555555 678999999998887666644211 13445
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC
Q psy3640 320 PDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399 (616)
Q Consensus 320 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 399 (616)
+++..+.+...+|.+..|. ..+..++|+|+++.|+++..++. ++|.+...............
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~--- 237 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAEL--- 237 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHH---
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhh---
Confidence 5666666666677665442 23578999999999988887663 44544321000000000000
Q ss_pred CcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANL 478 (616)
Q Consensus 400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~i 478 (616)
...+. ..++......++++++|.++++...++.|.+||..+++....... ....+.++++.+++.++++.+..+.+.+
T Consensus 238 ~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 238 GSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP 316 (343)
T ss_dssp HTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred hcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence 00011 112333556789999999999988899999999856654333332 2456899999999888887766554433
Q ss_pred E
Q psy3640 479 W 479 (616)
Q Consensus 479 w 479 (616)
|
T Consensus 317 f 317 (343)
T 2qe8_A 317 L 317 (343)
T ss_dssp G
T ss_pred c
Confidence 3
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.47 E-value=1.5e-12 Score=128.82 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=139.3
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCCc----------EEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCC
Q psy3640 189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH----------EICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK 258 (616)
Q Consensus 189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~----------~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~ 258 (616)
+++.+++++.+.++++|+.++ +++|++++.+ .......+.. |+.++| ++.+++.+.++.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence 699999999999999999985 6669875433 1112234666 999999 7776655599999999998
Q ss_pred CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFN 338 (616)
Q Consensus 259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d 338 (616)
+.........|...+.++.+.++ .+++++.||.+.+||+.++.... ......+++|+|+| ++.|..||.+++|+
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA 188 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred hhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence 88777777788889999988754 39999999999999999887654 55677788999999 78899999999999
Q ss_pred CCCCce--eEEe------e---cCCcCEEEEEEcCCCCEEEEEE
Q psy3640 339 TNSGQE--MHTL------K---AHTGPVISLQFSSDRNMLITGS 371 (616)
Q Consensus 339 ~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~l~~g~ 371 (616)
...++. ..++ . +|...|.++.|.+++.++++-.
T Consensus 189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 887775 5555 2 3678899999999988887643
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.46 E-value=2.3e-10 Score=115.16 Aligned_cols=298 Identities=9% Similarity=0.038 Sum_probs=193.7
Q ss_pred CCEEEEEECCCeEEEEeCCCcceeEEeeece---------eeE--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecC
Q psy3640 283 GDKILTGSFDKTLKLWASAKEECIQTYRGHS---------AEV--TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~v--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 351 (616)
+..+++++.++.|..+|..+++.+-.+.... ..+ ....++..+++++.++.|..+|..+|+.+......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 6788888889999999999998876655421 112 23335678888999999999999999998877654
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce-----eEEEEccCCCEEE
Q psy3640 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI-----SNCLFNFSNSMIA 426 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~ 426 (616)
......... .+..+++++.++.+..+|.. +++............ ...... +..++
T Consensus 133 ~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~----------------tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~ 192 (376)
T 3q7m_A 133 GEALSRPVV--SDGLVLIHTSNGQLQALNEA----------------DGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV 192 (376)
T ss_dssp SCCCSCCEE--ETTEEEEECTTSEEEEEETT----------------TCCEEEEEECCC-----CCCCCCEEE--TTEEE
T ss_pred CceEcCCEE--ECCEEEEEcCCCeEEEEECC----------------CCcEEEEEeCCCCceeecCCCCcEEE--CCEEE
Confidence 322222222 24578888899999999986 333333332221110 111121 45678
Q ss_pred EEeCCCcEEEEeCCCCeEEEEeecCCCC----EE---EEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCC
Q psy3640 427 SSSLDGTAKLWDVRTMCCFYTLKNHEDE----VL---DIAFDY--SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE 497 (616)
Q Consensus 427 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~---~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 497 (616)
+++.++.+..+|..+++.+......... +. .+...| .+..++.++.++.+..+|..++.........
T Consensus 193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~---- 268 (376)
T 3q7m_A 193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG---- 268 (376)
T ss_dssp ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----
T ss_pred EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----
Confidence 8888999999999999888776532110 00 011111 2467888888999999999877544332211
Q ss_pred eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee
Q psy3640 498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577 (616)
Q Consensus 498 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~ 577 (616)
....+. .++..+++++.++.+..+|..++.............+..... .+..|+.++.+|.+.++|..+|+.+.
T Consensus 269 --~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 269 --SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp --CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred --CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 122222 247788888999999999998875544332122222333333 24588889999999999999999988
Q ss_pred EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 578 ~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
........+.+.... .+..|+.++.||.|..|+
T Consensus 343 ~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 343 QQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred EEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 776543433322112 356788899999999886
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.44 E-value=8e-11 Score=119.35 Aligned_cols=236 Identities=9% Similarity=0.084 Sum_probs=162.0
Q ss_pred ceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCcc
Q psy3640 312 HSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRN 389 (616)
Q Consensus 312 ~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~ 389 (616)
....++++++++++++...++.|+.||..++...........+ . ++|+++++.|+++..++ .|.+++...
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~------ 203 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKAS------ 203 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGG------
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCC------
Confidence 3456789999997777777899999999887766555443333 3 99999999999888766 688887652
Q ss_pred cccccccccCCcceEEE---ec-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE----eecCCCCE--EEEE
Q psy3640 390 AYAESTYRASHKPIHIL---TG-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT----LKNHEDEV--LDIA 459 (616)
Q Consensus 390 ~~~~~~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~l~ 459 (616)
......+ .. .......++++|++..|+++..++.|+.||..++..... ..+....- ..++
T Consensus 204 ----------~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia 273 (409)
T 3hrp_A 204 ----------GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI 273 (409)
T ss_dssp ----------TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred ----------CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence 1111122 12 345677899999655566677788999999987753322 11222222 3899
Q ss_pred EcCC-CCEEEEEeCCCcEEEEecCCceeeeeEEeccC------------CCeeeEEEEEEcCCCCEEEEEe-CCCcEEEE
Q psy3640 460 FDYS-GSKLATASSDQTANLWTVGGAVELLQTFYGHS------------NEVSKVLDIAFDYSGSKLATAS-SDQTAKLW 525 (616)
Q Consensus 460 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vw 525 (616)
|+|+ +.++++-..++.|+.|+...... .+.+.. ........++++++|+++++-. .++.|+.|
T Consensus 274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~ 350 (409)
T 3hrp_A 274 YYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL 350 (409)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred EeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence 9995 55566666778899999876422 222221 1123467899999999877777 88999999
Q ss_pred ecCCceEEeEEeecc---------------ccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640 526 TVGGAVELLQTFYGH---------------SNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 526 d~~~~~~~~~~~~~h---------------~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
+..++. +..+.++ -.....++++|+|.++++-..++.|+.+++
T Consensus 351 ~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 351 DILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred ECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 976542 3334333 245889999999888888778888887765
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.42 E-value=6.7e-11 Score=128.08 Aligned_cols=318 Identities=10% Similarity=0.084 Sum_probs=195.9
Q ss_pred CCEEEEEECCCeEEEEeCCCcceeEEeeeceee----------E--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640 283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAE----------V--TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 350 (616)
+..+++++.++.|.-+|..+|+.+-++...... + .....+..+++++.|+.|..+|..+|+.+.....
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 577888888899999999999988777543210 0 0112467888999999999999999999988764
Q ss_pred C--CcCEEEEEEcC--CCCEEEEEE------CCCcEEEEecccccCCccccccccccc---CCcce----EEE-------
Q psy3640 351 H--TGPVISLQFSS--DRNMLITGS------FDSSIVVWDIQYQFGTRNAYAESTYRA---SHKPI----HIL------- 406 (616)
Q Consensus 351 ~--~~~v~~l~~~~--~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~----~~~------- 406 (616)
. ......+..+| .+..+++++ .+|.|+.||..+....-.......... ....+ ...
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 2 11111111112 123455543 368899999874322111000000000 00000 000
Q ss_pred -ecCccceeEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEeecC--C-------CCEEE
Q psy3640 407 -TGHSQEISNCLFNFSNSMIASSSLDGT-------------------AKLWDVRTMCCFYTLKNH--E-------DEVLD 457 (616)
Q Consensus 407 -~~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~--~-------~~v~~ 457 (616)
.+.......++++++...++.++.++. |..+|.++++.+..++.. . .++..
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 011111235788888899999988764 999999999999887642 1 12222
Q ss_pred EEEcCCCC---EEEEEeCCCcEEEEecCCceeeeeEEeccC------------------------CCee-----------
Q psy3640 458 IAFDYSGS---KLATASSDQTANLWTVGGAVELLQTFYGHS------------------------NEVS----------- 499 (616)
Q Consensus 458 l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~~~~----------- 499 (616)
.....+|+ .++.++.+|.++++|..++..+........ ....
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~ 389 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH 389 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc
Confidence 22223554 788899999999999988765432211110 0000
Q ss_pred eEEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEecCCceEEe
Q psy3640 500 KVLDIAFDYSGSKLATASS---------------------------------------------DQTAKLWTVGGAVELL 534 (616)
Q Consensus 500 ~i~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~vwd~~~~~~~~ 534 (616)
.-..++++|+..++++... +|.+..||+.++....
T Consensus 390 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W 469 (689)
T 1yiq_A 390 DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW 469 (689)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe
Confidence 0112688898888887632 3779999999875444
Q ss_pred EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccE-EEEEEeeCCC-EEEEee
Q psy3640 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV-FSCGFNYNGD-TIITAS 602 (616)
Q Consensus 535 ~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~~~~-~l~t~s 602 (616)
+. ..+ .+...-.++..+.++++|+.||.++.||.++|+.+..++.+.+.+ ..+.|..+|+ ++++.+
T Consensus 470 ~~-~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 470 EV-PYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EE-EES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred Ec-cCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 43 322 333444666788899999999999999999999998887553322 3466788886 444443
No 219
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=5.3e-08 Score=107.82 Aligned_cols=410 Identities=12% Similarity=0.040 Sum_probs=246.0
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-e---c---cCCcEEEEEEcC--CCCEEEEECCCcEEEEeCC
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-R---G---HQNVVYAVAFSE--PYGCLTGSYDRTCKLWDIK 258 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~---~---h~~~I~~l~fs~--~~~lls~s~d~~I~iwd~~ 258 (616)
..|.++..+++|..|-.|+.++-+..||..+.+..... . . ....|.++.... ++.+..++.++.|..+|..
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~ 145 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA 145 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC
Confidence 46999999998874666787756999998877654321 1 0 123688998888 7887788867779999988
Q ss_pred CCceEEEee-----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCCC
Q psy3640 259 SGHEICTYR-----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQS 323 (616)
Q Consensus 259 ~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~~ 323 (616)
+++...... .....|.++... .+ ..+..++.++-+..+|..+++...... .....+...+++.
T Consensus 146 ~~~~~~~~~~~~~~l~~~~i~~i~~d-~~-g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 223 (781)
T 3v9f_A 146 TGKFTHYNKSTVPALPSEQTWTATEA-ED-GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN 223 (781)
T ss_dssp TTEEEEESTTTCTTCSCCCEEEEEEE-ET-TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC
T ss_pred CCeEEeeccCcccCCCccceEEEEEC-CC-CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC
Confidence 776543211 123568888775 44 455557777678899988765432211 1223344555665
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEee-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc-ccc
Q psy3640 324 TFCSCSMDHTARIFNTNSGQEMHTLK-------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA-EST 395 (616)
Q Consensus 324 ~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~ 395 (616)
+. .|+.+ -+.+||..+++...... .....|.++...++|. +..|+..+-|.++|.....-...... ...
T Consensus 224 lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~ 300 (781)
T 3v9f_A 224 IW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEF 300 (781)
T ss_dssp EE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEE
T ss_pred EE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccc
Confidence 44 45555 58899987665432211 1245689999887765 66677656788888753211000000 000
Q ss_pred cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee---------cCCCCEEEEEEcCCCCE
Q psy3640 396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK---------NHEDEVLDIAFDYSGSK 466 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~ 466 (616)
...... ........|.++....++. +..|+.++-|..++..+........ .....|.+++.+++|.
T Consensus 301 ~~~~~~---~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~- 375 (781)
T 3v9f_A 301 IREGDN---NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK- 375 (781)
T ss_dssp ECBCSS---TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-
T ss_pred ccCCCC---CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-
Confidence 000000 0011345678888887776 5566767778889887654322110 1235699999988875
Q ss_pred EEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccC
Q psy3640 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNE 543 (616)
Q Consensus 467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~ 543 (616)
|..|+.++-+..|+..+...... ..........|.++..++++.+.+ |+.++.+..++..++ .. ..+. .....
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~~ 451 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-KF-QIIELEKNELLD 451 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-EE-EECCSTTTCCCC
T ss_pred EEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-cE-EEeccCCCCCCe
Confidence 45566666788888765321111 111122335688888888776554 677777888988663 22 2222 13467
Q ss_pred EEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccC-----cccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 544 VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH-----EDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 544 v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
|.++...++|+ |..|+. +-+..||..+++........ ...|.++...++|.+.+....+| +..|+..+
T Consensus 452 v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~ 524 (781)
T 3v9f_A 452 VRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM 524 (781)
T ss_dssp EEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred EEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence 89998888876 444555 45889998877654333222 35699998888887655443344 66676543
No 220
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.41 E-value=1.4e-10 Score=125.23 Aligned_cols=309 Identities=12% Similarity=0.139 Sum_probs=200.2
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeccCCc-----------EEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----------VYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR 267 (616)
Q Consensus 199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-----------I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~ 267 (616)
+..|++++.++.|.-+|..+|+.+-++...... -..+++ .++.+++++.|+.|..+|..+|+.+..+.
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 567788888899999999999999887643210 112233 25567788999999999999999999887
Q ss_pred CC-C----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeece----------------------
Q psy3640 268 GH-Q----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGHS---------------------- 313 (616)
Q Consensus 268 ~h-~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~---------------------- 313 (616)
.+ . ..+.+ .... +..++.++. ++.|..+|..+|+.+-++....
T Consensus 156 ~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp TTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred CCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 65 2 11211 1121 455666553 6999999999999887664311
Q ss_pred -------------eeEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEeecCC---------
Q psy3640 314 -------------AEVTFSPDQSTFCSCSMDH-------------------TARIFNTNSGQEMHTLKAHT--------- 352 (616)
Q Consensus 314 -------------~~v~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~--------- 352 (616)
..++++|++..++.++.++ .|..+|..+|+.+..++...
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 1357889999999887664 49999999999998876421
Q ss_pred cCEEEEEEcCCC---CEEEEEECCCcEEEEecccccCCccccccc-c----cccCCcceE------------EEecCc--
Q psy3640 353 GPVISLQFSSDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAES-T----YRASHKPIH------------ILTGHS-- 410 (616)
Q Consensus 353 ~~v~~l~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~----~~~~~~~~~------------~~~~~~-- 410 (616)
....-+....+| ..+++++.+|.++++|..+........... . ......++. ...+..
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 122223333467 678999999999999987442211100000 0 000000000 000000
Q ss_pred cceeEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEeCCCCeEEEE
Q psy3640 411 QEISNCLFNFSNSMIASSSLD-------------------------------------------GTAKLWDVRTMCCFYT 447 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~iwd~~~~~~~~~ 447 (616)
..-..++++|+..++++...+ |.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 001256788888888776432 7899999999999888
Q ss_pred eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE
Q psy3640 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT 515 (616)
Q Consensus 448 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 515 (616)
+.. ..++....+...+..++.++.||.+++||..++..+............. +.+..+|+.+++
T Consensus 473 ~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p---~~y~~~G~~~v~ 536 (677)
T 1kb0_A 473 VEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVS 536 (677)
T ss_dssp EEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEE
T ss_pred cCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCC---EEEEeCCEEEEE
Confidence 763 3344455566678889999999999999999886655544443222222 455677765443
No 221
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.41 E-value=2.9e-12 Score=126.48 Aligned_cols=298 Identities=14% Similarity=0.083 Sum_probs=188.5
Q ss_pred EEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece
Q psy3640 234 AVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS 313 (616)
Q Consensus 234 ~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 313 (616)
++....++.+..++.++.|..|| .+++.......+...+.++... +++ .+..++.+ +..+|. +++....+....
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG-KDG-TIYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET-TTT-EECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe-cCC-cEEEecCc--EEEECC-CCcEEEEEECCC
Confidence 34555678888888899999999 8898877666555556667664 444 45555554 888886 555443322211
Q ss_pred ---eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 314 ---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 314 ---~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
....+. +..+.+++.++.+..+|.. ++.......+...+.++...+++. +..++.++.+..+|..
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-------- 165 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-------- 165 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--------
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--------
Confidence 112232 6678888889999999998 887777766666666777777776 6667778999999874
Q ss_pred ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE
Q psy3640 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA 470 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~ 470 (616)
.............+.++...+++.+.+ ++ +.+..+| .+++...........+.++..+++|. +..+
T Consensus 166 ---------g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~ 231 (330)
T 3hxj_A 166 ---------GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVT 231 (330)
T ss_dssp ---------SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEE
T ss_pred ---------CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEE
Confidence 222223333344566666666776554 44 7899999 77777766665556677777777664 4445
Q ss_pred eCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640 471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH 550 (616)
Q Consensus 471 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s 550 (616)
+.++.+..++.... .. | ........+..+.+.
T Consensus 232 t~~~gl~~~~~~g~-~~-------------------------------------~----------~~~~~~~~~~~~~~~ 263 (330)
T 3hxj_A 232 SLDGHLYAINPDGT-EK-------------------------------------W----------RFKTGKRIESSPVIG 263 (330)
T ss_dssp ETTTEEEEECTTSC-EE-------------------------------------E----------EEECSSCCCSCCEEC
T ss_pred cCCCeEEEECCCCC-Ee-------------------------------------E----------EeeCCCCccccceEc
Confidence 56666666653221 10 0 111111112234444
Q ss_pred cCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 551 PTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 551 pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
+++ .|..++.+|.+..+|. +++.+..+......+.++...++|. |..++.+|.+++...+.
T Consensus 264 ~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 264 NTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred CCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 455 5666777888889986 6777766665555566676666665 55588899998877654
No 222
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=3e-08 Score=109.84 Aligned_cols=405 Identities=11% Similarity=0.051 Sum_probs=242.0
Q ss_pred cceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEEEEEec------cCCcEEEEEEcCCCCEEEEECCCcEEEEeCCC
Q psy3640 188 LPLTNITFDK--FGTRCLTGSYDRTCKLWDIKSGHEICTYRG------HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKS 259 (616)
Q Consensus 188 ~~i~~v~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~------h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~ 259 (616)
..|.++..++ +|. |..++.++.|..||..+++.. .+.. ....|.++...+++.+..++.++-+..||..+
T Consensus 115 ~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~ 192 (781)
T 3v9f_A 115 NDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLND 192 (781)
T ss_dssp SCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred CcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCC
Confidence 3688998887 665 455664556889998776543 3321 23568888888888888888887799999888
Q ss_pred CceEEEee-------CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCC
Q psy3640 260 GHEICTYR-------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQ 322 (616)
Q Consensus 260 ~~~~~~~~-------~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~ 322 (616)
++...... .....|.++... +++.+.+ |+.+ -+.+||..+++...... .....+...+++
T Consensus 193 ~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g 269 (781)
T 3v9f_A 193 KSVKHFVHDPQNPNSLPGNDVRCIYKD-TNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN 269 (781)
T ss_dssp TEEEEECC--------CCSSEEEEEEC-TTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS
T ss_pred CceEeeecCCCCcccCCCCceeEEEEc-CCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC
Confidence 76433211 113568888876 5555444 5555 68899987765432211 112233444444
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEee--------------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640 323 STFCSCSMDHTARIFNTNSGQEMHTLK--------------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388 (616)
Q Consensus 323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~ 388 (616)
.+..|+..+-|.++|..+++...... .....|.++...++|+ |..|+.++-|..++.....-..
T Consensus 270 -~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~ 347 (781)
T 3v9f_A 270 -KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT 347 (781)
T ss_dssp -EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE
T ss_pred -CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee
Confidence 56667775668899987765432111 2345799999988876 6667777788888865211000
Q ss_pred ccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCEEEEEEcCCCC
Q psy3640 389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL---KNHEDEVLDIAFDYSGS 465 (616)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~ 465 (616)
..... .... ........|.++...+++. +..|+.++-+..||..++...... ......|.++..++++.
T Consensus 348 --~~~~~---~~~~--~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~ 419 (781)
T 3v9f_A 348 --WSYSP---TQMN--ESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN 419 (781)
T ss_dssp --EC-------CCC--SSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC
T ss_pred --eccCc---cccc--cCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC
Confidence 00000 0000 0001234578888777766 445666667889998765332111 12346799999988876
Q ss_pred EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc-----
Q psy3640 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH----- 540 (616)
Q Consensus 466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h----- 540 (616)
+. .|+.++.+..++..+... ..+.........|.++..++++.+.+ |+. +.+..++..+.. ........
T Consensus 420 lW-igt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~ 493 (781)
T 3v9f_A 420 LW-FGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK-VIHHYDTSNSQLL 493 (781)
T ss_dssp EE-EEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS-CCEEECTTTSSCS
T ss_pred EE-EEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe-EEecccCcccccc
Confidence 54 466667788888765421 11111122334677888888776544 455 568889876532 11111111
Q ss_pred ccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc---CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA---HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615 (616)
Q Consensus 541 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~ 615 (616)
...|.++...++|++.+ |+.++-+..||..+++....... ....|.++...++|.+.++. .+|.+..|+..++
T Consensus 494 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 494 ENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp CSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred cceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 35789999998887554 44434488899877654432211 23568899888888766544 4665588877543
No 223
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=5.6e-10 Score=108.18 Aligned_cols=234 Identities=13% Similarity=0.099 Sum_probs=156.7
Q ss_pred eccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc
Q psy3640 226 RGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 303 (616)
Q Consensus 226 ~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~ 303 (616)
..+..-..+..|++++. ++ +...++.|..||..+++. ..+. ....+.+++++ ++++++++ . ++.|.+||..++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCC
Confidence 33445567888998654 44 666789999999998765 3333 45789999999 77885554 4 578999999887
Q ss_pred ceeEEee-------eceeeEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEE
Q psy3640 304 ECIQTYR-------GHSAEVTFSPDQSTFCSCSMD---------HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML 367 (616)
Q Consensus 304 ~~~~~~~-------~~~~~v~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l 367 (616)
+...... .....++++|++++.++.... ..-.+|.+........+..+......++|+|+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 6543322 123457899999976654321 223455444322223333344456899999999876
Q ss_pred EEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy3640 368 ITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY 446 (616)
Q Consensus 368 ~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 446 (616)
+.+ +.++.|.+|++........ .......+..+......+++.++|++.++...++.|..||..+++.+.
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEE---------EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred EEecCCCCcEEEEeccCCCCccc---------CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence 554 5578899998741110000 011112222334566789999999888888888899999999999988
Q ss_pred EeecCCCCEEEEEEc-CCCCEEEEEeCC
Q psy3640 447 TLKNHEDEVLDIAFD-YSGSKLATASSD 473 (616)
Q Consensus 447 ~~~~~~~~v~~l~~~-~~~~~l~~~~~d 473 (616)
.+..+...+++++|. |+++.|++++..
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 888777889999998 888877766543
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.40 E-value=8.3e-11 Score=127.09 Aligned_cols=296 Identities=9% Similarity=0.070 Sum_probs=197.9
Q ss_pred CCEEEEEECCCeEEEEeCCCcceeEEeeecee--------------eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640 283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSA--------------EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL 348 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 348 (616)
+..+++++.++.|.-+|..+|+.+-++..... .+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 56777778889999999999988877654321 1222 5678888999999999999999999888
Q ss_pred ecC-C----cCEEE-EEEcCCCCEEEEEEC------CCcEEEEecccccCCcccccccccccCCcceEEEec--------
Q psy3640 349 KAH-T----GPVIS-LQFSSDRNMLITGSF------DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-------- 408 (616)
Q Consensus 349 ~~~-~----~~v~~-l~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 408 (616)
..+ . ..+.+ ... .+..+++++. ++.|+.+|..+.. .+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~----------------~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE----------------RKWRWFSVPGDPSKP 216 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC----------------EEEEEESSCCCTTSC
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc----------------EEEEeccCCCCcccc
Confidence 754 2 11111 111 2345555543 6899999987432 2222211
Q ss_pred ------------------------CccceeEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCeEE
Q psy3640 409 ------------------------HSQEISNCLFNFSNSMIASSSLDG-------------------TAKLWDVRTMCCF 445 (616)
Q Consensus 409 ------------------------~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~ 445 (616)
.......+++++++..++.++.++ .|..+|.++++..
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~ 296 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK 296 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred ccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE
Confidence 111223577888889998887764 4999999999998
Q ss_pred EEeecCC---------CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeEEeccCC-------CeeeE-----
Q psy3640 446 YTLKNHE---------DEVLDIAFDYSG---SKLATASSDQTANLWTVGGAVELLQTFYGHSN-------EVSKV----- 501 (616)
Q Consensus 446 ~~~~~~~---------~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i----- 501 (616)
..++... ....-+....+| ..++.++.+|.++++|..++............ ....+
T Consensus 297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~ 376 (677)
T 1kb0_A 297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA 376 (677)
T ss_dssp EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecccc
Confidence 8876421 112223333466 67899999999999999887654433221110 00001
Q ss_pred -------------------EEEEEcCCCCEEEEEeCC-------------------------------------------
Q psy3640 502 -------------------LDIAFDYSGSKLATASSD------------------------------------------- 519 (616)
Q Consensus 502 -------------------~~~~~s~~~~~l~~~~~d------------------------------------------- 519 (616)
..++++|++.++++...+
T Consensus 377 ~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 456 (677)
T 1kb0_A 377 RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF 456 (677)
T ss_dssp GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred CcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCc
Confidence 146889998888876432
Q ss_pred CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcc-cEEEEEEeeCCCEE
Q psy3640 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTI 598 (616)
Q Consensus 520 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l 598 (616)
|.|..||+.++....+.. +..++....+..++.++++++.||.+++||.++|+.+..+....+ ....+.|..+|+..
T Consensus 457 g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 779999998875544432 334455566777888999999999999999999999988875432 12335567888644
Q ss_pred EE
Q psy3640 599 IT 600 (616)
Q Consensus 599 ~t 600 (616)
+.
T Consensus 535 v~ 536 (677)
T 1kb0_A 535 VS 536 (677)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.39 E-value=3e-10 Score=122.95 Aligned_cols=298 Identities=12% Similarity=0.081 Sum_probs=195.8
Q ss_pred CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc----------E-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640 240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308 (616)
Q Consensus 240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 308 (616)
++.+++++.++.|..+|..+|+.+..+..+... + ..+++. +..++.++.|+.|..+|..+|+.+-.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEeee
Confidence 566778888999999999999999988644321 1 122333 57889999999999999999998877
Q ss_pred eeec-e----eeEEEcC--CCCEEEEEe------CCCcEEEEECCCCceeEEeecCC-----------------------
Q psy3640 309 YRGH-S----AEVTFSP--DQSTFCSCS------MDHTARIFNTNSGQEMHTLKAHT----------------------- 352 (616)
Q Consensus 309 ~~~~-~----~~v~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~----------------------- 352 (616)
+... . ..+..+| .+..+++++ .+|.|..||..+|+.+..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 6543 1 1111222 133445443 36899999999999988775211
Q ss_pred --------cCEEEEEEcCCCCEEEEEECCCc-------------------EEEEecccccCCcccccccccccCCcceEE
Q psy3640 353 --------GPVISLQFSSDRNMLITGSFDSS-------------------IVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 353 --------~~v~~l~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
.....++++|++.++++++.++. |..+|.. +++.+..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----------------TG~~~W~ 290 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----------------TGEYVWH 290 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----------------TCCEEEE
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----------------CCceeEe
Confidence 01125788898899999887764 8888887 4444444
Q ss_pred Eec--Cc-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC-C------------------
Q psy3640 406 LTG--HS-------QEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHED-E------------------ 454 (616)
Q Consensus 406 ~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~------------------ 454 (616)
+.. |. .+........+++ .++.++.+|.++++|.++++.+........ .
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 432 11 1111112223554 788899999999999999998754332110 0
Q ss_pred --------------------EEEEEEcCCCCEEEEEeC------------------------------------------
Q psy3640 455 --------------------VLDIAFDYSGSKLATASS------------------------------------------ 472 (616)
Q Consensus 455 --------------------v~~l~~~~~~~~l~~~~~------------------------------------------ 472 (616)
-..++++|+..++++...
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 112688888888777532
Q ss_pred ---CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEE
Q psy3640 473 ---DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549 (616)
Q Consensus 473 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~ 549 (616)
+|.+..||+.++....+........ .-.+...+.++++++.||.++.||.+++..+.+...++....+-+.|
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~-----~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTIFN-----GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSCC-----CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCcceeEEEEECCCCCeEeEccCCCCcc-----CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 3678999998876555443322111 12445678899999999999999999975554443343333355777
Q ss_pred ecCCC-EEEEEEC
Q psy3640 550 HPTGK-LVLSGSQ 561 (616)
Q Consensus 550 spdg~-~l~s~s~ 561 (616)
..+|+ ++++.+.
T Consensus 526 ~~~G~qyv~~~~G 538 (689)
T 1yiq_A 526 SVDGEQYVTFMAG 538 (689)
T ss_dssp EETTEEEEEEEEC
T ss_pred EECCEEEEEEEec
Confidence 88887 4444443
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.39 E-value=1.3e-11 Score=122.50 Aligned_cols=264 Identities=11% Similarity=0.085 Sum_probs=165.7
Q ss_pred eeeceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe-------ecCCcCEEEEEEcCCCCEEEEEEC-----CC
Q psy3640 309 YRGHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTL-------KAHTGPVISLQFSSDRNMLITGSF-----DS 374 (616)
Q Consensus 309 ~~~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~-----dg 374 (616)
+......++++++++.+++... ++.+.+|.+.+++. ..+ ..+...+.+++++++++++++-.. ++
T Consensus 15 ~~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 15 LSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp ESSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred cCCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence 3334455677888877776532 23233443334432 222 124467899999999876665433 57
Q ss_pred cEEEEecccccCCcccccccccccCCcceEEEec------CccceeEEEEccCCCEE-EEEe---CCCcEEEEeCCCCeE
Q psy3640 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------HSQEISNCLFNFSNSMI-ASSS---LDGTAKLWDVRTMCC 444 (616)
Q Consensus 375 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~ 444 (616)
.|.+||+. +...+..+.. +......+++++++..+ ++.. .++.|.+||+.+++.
T Consensus 94 ~i~~~d~~----------------tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 94 KLVAWDTL----------------NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp EEEEEETT----------------TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred eEEEEECC----------------CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 89999986 3332333321 22346789999865554 4444 578899999998887
Q ss_pred EEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC-cE
Q psy3640 445 FYTLKNHEDEVL-DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ-TA 522 (616)
Q Consensus 445 ~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i 522 (616)
...+..|..... ...+.++|..+.+.+.++.+..|.. ....++++|+++.|+.+..++ .+
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~------------------~~~gia~s~dg~~ly~~~~~~~~l 219 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL------------------GVNGIVLDAENEWLYLSPMHSTSM 219 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC------------------CEEEEEECTTSCEEEEEESSCSEE
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceeceec------------------ccceeEeccCCCEEEEEeCCCCeE
Confidence 766654322110 1334456767777777877766542 145689999999998888766 45
Q ss_pred EEEecC---Cc----eEEe--EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-CcccEEEEEEe
Q psy3640 523 KLWTVG---GA----VELL--QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA-HEDDVFSCGFN 592 (616)
Q Consensus 523 ~vwd~~---~~----~~~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~~s 592 (616)
..++.. .. .+.. ....++.+....++++++|+++++...++.|.+||.++|+....... +.....+++|.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 444431 10 0000 01123444567799999999999988899999999866765433332 24568899999
Q ss_pred eCCCEEEEeeCCCcE
Q psy3640 593 YNGDTIITASKDNTC 607 (616)
Q Consensus 593 ~~~~~l~t~s~Dg~i 607 (616)
+++.++++.+..+.+
T Consensus 300 ~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 300 SDGYLYFDCNQLHHS 314 (343)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred CCCcEEEEeCccccc
Confidence 999988887755443
No 227
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.37 E-value=2.1e-10 Score=111.75 Aligned_cols=236 Identities=8% Similarity=0.056 Sum_probs=156.8
Q ss_pred eeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC
Q psy3640 344 EMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN 422 (616)
Q Consensus 344 ~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 422 (616)
.+..+...........|+|+++ +++++..++.|..|+.. . ....+..+...+..+++++++
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~----------------g--~~~~~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED----------------G--TVDVLLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT----------------S--CEEEEEESCSCEEEEEECTTS
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC----------------C--CEEEEeCCCCccceeeECCCC
Confidence 3444444555678899999998 56666678899999863 1 123444455678899999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEec
Q psy3640 423 SMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLAT----ASS-------------DQTANLWTV 481 (616)
Q Consensus 423 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~----~~~-------------dg~i~iwd~ 481 (616)
+++++...++.|..|+.. ++........ ...+.+++++++|++.++ +.. .+.|..++.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 977766666889999986 5432222111 134678999999998876 321 245666666
Q ss_pred CCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC------CcEEEEecCCceE-EeEEe-eccccCEEEEEEecCC
Q psy3640 482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD------QTAKLWTVGGAVE-LLQTF-YGHSNEVSKVSFHPTG 553 (616)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~-~~~~~-~~h~~~v~~l~~spdg 553 (616)
.++.... .. .......++|+|+++.|+++... +.|.+|++..... ....+ ....+....++++++|
T Consensus 177 ~~g~~~~--~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 177 DGSPLQR--MA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp SSCCCEE--EE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred CCCcEEE--Ee----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC
Confidence 4432211 11 11234578999999988887765 7899999865421 01111 1123445678999999
Q ss_pred CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEE
Q psy3640 554 KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCC 608 (616)
Q Consensus 554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~ 608 (616)
++.++ ..+ .|.+|+. +++.+..+..+. .+.+++|+++++.|..++.++..+
T Consensus 251 ~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 251 WLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 85444 444 4999998 677777777655 488899999998888887765433
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.37 E-value=2.9e-11 Score=131.88 Aligned_cols=238 Identities=11% Similarity=0.082 Sum_probs=156.8
Q ss_pred cCCcceEEEEECCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCC--------
Q psy3640 185 SHLLPLTNITFDKFGTRCLTGS-----YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDR-------- 250 (616)
Q Consensus 185 ~h~~~i~~v~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~-------- 250 (616)
+|...+..++|||||++||-+. .+.+|++||+++++.+... .+......++|+ |++ ++.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 4666899999999999998543 3357999999999876431 111113567899 988 55666553
Q ss_pred -----cEEEEeCCCCce--EEEe--eC-CCCcEEEEEEeCCCCCEEEEEEC----CCeEEEEeCCCcc-eeEEeeeceee
Q psy3640 251 -----TCKLWDIKSGHE--ICTY--RG-HQNVVYAVAFSEPYGDKILTGSF----DKTLKLWASAKEE-CIQTYRGHSAE 315 (616)
Q Consensus 251 -----~I~iwd~~~~~~--~~~~--~~-h~~~V~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~ 315 (616)
.|++|++.++.. ...+ .. |...+.++.|+ +++++|+.... +..+.++|+.++. ....+..+...
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999987753 2333 33 45567889999 88888765443 2589999998764 33444333322
Q ss_pred --EEEcCCCCEEEEEeC----CCcEEEEECCCCce--eEEeecCCcCEEEEEEcCCCCEEEEEECCC---cEEEEecccc
Q psy3640 316 --VTFSPDQSTFCSCSM----DHTARIFNTNSGQE--MHTLKAHTGPVISLQFSSDRNMLITGSFDS---SIVVWDIQYQ 384 (616)
Q Consensus 316 --v~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---~i~iwd~~~~ 384 (616)
-.+++++..++..+. .+.|..+|+.++.. ...+..|...+. .|+++++.|+....++ .|++|++.
T Consensus 283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~-- 358 (693)
T 3iuj_A 283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE-- 358 (693)
T ss_dssp CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--
T ss_pred eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--
Confidence 136777776665554 25799999987654 345656666655 8888888887766544 67888874
Q ss_pred cCCcccccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeE
Q psy3640 385 FGTRNAYAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCC 444 (616)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 444 (616)
......+. .....+..+.+++++..++....+ +.+..||+.+++.
T Consensus 359 ---------------g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 ---------------GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ---------------SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ---------------CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 12222222 233455666677788776666554 7899999987753
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.5e-11 Score=121.67 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=128.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640 354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 354 ~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
++..+++++...++++|+.+ .+.+|++........... ....+... ..+.. |..++| ++++|+++ .++.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----TPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----CCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----ccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence 68899999999999999987 556699763321000000 01122122 23555 999999 88999998 7899
Q ss_pred EEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE
Q psy3640 434 AKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 513 (616)
|++||+++.........+...+.++.+.+. .+++++.||.+.+||+.+.
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~----------------------------- 156 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK----------------------------- 156 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-----------------------------
T ss_pred EEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-----------------------------
Confidence 999999887655556666666766655543 2666666666666666542
Q ss_pred EEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee--eeEe------c---cC
Q psy3640 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC--IQVL------K---AH 582 (616)
Q Consensus 514 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~h 582 (616)
.. .. +...|++++|||+| ++.|..||++++|+...+++ ..++ . +|
T Consensus 157 -----------------~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~ 212 (388)
T 1xip_A 157 -----------------ST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE 212 (388)
T ss_dssp -----------------CE-EE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT
T ss_pred -----------------cc-cc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC
Confidence 11 11 34589999999999 78899999999999887775 5556 2 37
Q ss_pred cccEEEEEEeeCCCEEEEe
Q psy3640 583 EDDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 583 ~~~V~~l~~s~~~~~l~t~ 601 (616)
...|.++.|.+++.++++-
T Consensus 213 ~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 213 EYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TSEEEEEEESSSSEEEEEE
T ss_pred CeeEEEEEEecCCeEEEEE
Confidence 7889999999999988873
No 230
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.1e-09 Score=107.58 Aligned_cols=221 Identities=14% Similarity=0.034 Sum_probs=151.1
Q ss_pred cceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe
Q psy3640 188 LPLTNITFDKFGT-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 188 ~~i~~v~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~ 266 (616)
.-..+.+|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+++++++.++.+ .|.+||..+++.....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEe
Confidence 3457889999855 5556667889999999887643 333 3568999999999998877654 4999999888764332
Q ss_pred eC----CCCcEEEEEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEee--eceeeEEEcCCCCEEEEE-eCCCc
Q psy3640 267 RG----HQNVVYAVAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSC-SMDHT 333 (616)
Q Consensus 267 ~~----h~~~V~~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~-~~dg~ 333 (616)
.. ....+..++++ ++++.+++... .+.|..++ +++...... .....++|+|+++.++.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 12468899998 77887665542 24555555 444332222 234567899999877655 45688
Q ss_pred EEEEECC--CC-ce-----eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640 334 ARIFNTN--SG-QE-----MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405 (616)
Q Consensus 334 i~i~d~~--~~-~~-----~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (616)
|.+||+. ++ .. ...+.........++++++|++.++...++.|.+||.. ...+..
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-----------------g~~~~~ 265 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----------------GNHIAR 265 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----------------CCEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-----------------CCEEEE
Confidence 9999986 55 32 22232234557889999999877777677889999863 333444
Q ss_pred EecCccceeEEEEc-cCCCEEEEEeCC
Q psy3640 406 LTGHSQEISNCLFN-FSNSMIASSSLD 431 (616)
Q Consensus 406 ~~~~~~~i~~~~~~-~~~~~l~~~~~d 431 (616)
+..+...+.+++|. +++..|++++..
T Consensus 266 i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 266 YEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EECCCCCcEEEEEecCCCCEEEEEecC
Confidence 55556678999998 887777665544
No 231
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.36 E-value=1.6e-09 Score=106.39 Aligned_cols=221 Identities=10% Similarity=0.025 Sum_probs=148.3
Q ss_pred EEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640 355 VISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 355 v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
..+.+|+|++. ++++...++.|..||.. ... ...+. ....+.+++++++++++++. .+ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-g 110 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLA----------------SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DD-G 110 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TT-E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CC-C
Confidence 46788999755 55566667899999975 222 12222 23568889999999877754 44 4
Q ss_pred EEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEE
Q psy3640 434 AKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLD 503 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 503 (616)
|.+||..+++........ ...+.+++++|+|+++++... .+.|..++ ++ .... +.. .......
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~-~~~---~~~~~~~ 183 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTK-LFA---DISIPNS 183 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEE-EEE---EESSEEE
T ss_pred EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEE-eeC---CCcccCC
Confidence 999999887654332211 235889999999987665542 24455555 22 2211 111 1122457
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEecC--Cc-e----EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee
Q psy3640 504 IAFDYSGSKLATAS-SDQTAKLWTVG--GA-V----ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575 (616)
Q Consensus 504 ~~~s~~~~~l~~~~-~dg~i~vwd~~--~~-~----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~ 575 (616)
++|+|+++.++.+. .++.|.+|++. ++ . .....+......+..++++++|++.++...++.|.+|+. +++.
T Consensus 184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~ 262 (326)
T 2ghs_A 184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH 262 (326)
T ss_dssp EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence 89999999776554 57899999985 33 1 222233334456788999999988777777789999998 6788
Q ss_pred eeEeccCcccEEEEEEe-eCCCEEEEeeC
Q psy3640 576 IQVLKAHEDDVFSCGFN-YNGDTIITASK 603 (616)
Q Consensus 576 ~~~~~~h~~~V~~l~~s-~~~~~l~t~s~ 603 (616)
+..+..+...+++++|+ ++++.|+.++.
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 88887777789999999 88876654443
No 232
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.34 E-value=5.8e-11 Score=129.52 Aligned_cols=240 Identities=12% Similarity=0.084 Sum_probs=157.1
Q ss_pred CCcCEEEEEEcCCCCEEEEEE-----CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640 351 HTGPVISLQFSSDRNMLITGS-----FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI 425 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 425 (616)
+...+..++|+|||++++.+. ....|++||+. ++..+.. .........++|+ |++.|
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------tg~~~~~-~~~~~k~~~~~Ws-Dg~~l 188 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------SKQPLET-PLKDVKFSGISWL-GNEGF 188 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------TCSEEEE-EEEEEESCCCEEE-TTTEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------CCCCCcc-ccCCceeccEEEe-CCCEE
Confidence 344677889999999888543 23579999997 3333222 1111123567899 99999
Q ss_pred EEEeCCC-------------cEEEEeCCCCe----EEEEeec-CCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCC
Q psy3640 426 ASSSLDG-------------TAKLWDVRTMC----CFYTLKN-HEDEVLDIAFDYSGSKLATASS----DQTANLWTVGG 483 (616)
Q Consensus 426 ~~~~~dg-------------~i~iwd~~~~~----~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~ 483 (616)
+.++.+. .|++|++.+.. .+..... +.....++.++|+|++|+.... ...++++++.+
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~ 268 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ 268 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence 9888774 39999998764 3333333 4456789999999998865543 24789999876
Q ss_pred ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC----CCcEEEEecCCceE-EeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS----DQTAKLWTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 484 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
.......+..+..... .. +++++..|+..+. .+.|..+++.+... ..+.+..|...+. .|+++++.|+.
T Consensus 269 ~~~~~~~l~~~~~~~~---~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 269 ENAPLLTVQGDLDADV---SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp TTCCCEEEECSSSSCE---EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred CCCceEEEeCCCCceE---EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence 5333334443333222 22 5667776665543 35788999876422 1234556666665 89999998877
Q ss_pred EECCC---cEEEecCCcCeeeeEec-cCcccEEEEEEeeCCCEEEEeeCC----CcEEEcccCCC
Q psy3640 559 GSQDT---TCRLWSTESGECIQVLK-AHEDDVFSCGFNYNGDTIITASKD----NTCCIWRSMNR 615 (616)
Q Consensus 559 ~s~dg---~i~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~t~s~D----g~i~vW~~~~~ 615 (616)
...++ .|++|++..+. ...+. .+.+.+..+.++++++.|+....+ +++..||+.++
T Consensus 343 ~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 66543 68999987554 34443 344567788888888776655544 78999998654
No 233
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.34 E-value=6.1e-11 Score=117.09 Aligned_cols=268 Identities=7% Similarity=-0.048 Sum_probs=175.4
Q ss_pred eEEEEeCCCcceeEEeee-ceeeEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEeecCC-------cCE
Q psy3640 294 TLKLWASAKEECIQTYRG-HSAEVTFSPDQSTFCSCS----------MDHTARIFNTNSGQEMHTLKAHT-------GPV 355 (616)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~-------~~v 355 (616)
+|.+.|..+++.+.++.. ....+.++|+++.++++. .++.|.+||+.+++.+.++.... ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 888999999999988753 233789999999999886 36889999999999999986441 234
Q ss_pred EEEEEcCCCCEEEEEEC--CCcEEE--EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEeC
Q psy3640 356 ISLQFSSDRNMLITGSF--DSSIVV--WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430 (616)
Q Consensus 356 ~~l~~~~~~~~l~~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 430 (616)
..++++|||++++++.. +..+.+ +|.. . +..+... .. ..+.|++ ..+++.+.
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~----------------t---v~~i~v~-~~---~~~~p~g~~~~~~~~~ 183 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGAS----------------D---DQLTKSA-SC---FHIHPGAAATHYLGSC 183 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTE----------------E---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchh----------------h---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence 68999999999998875 457888 8875 2 1222110 00 1112332 34455667
Q ss_pred CCcEEEEeCCC-----CeEEE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeEEeccC-----
Q psy3640 431 DGTAKLWDVRT-----MCCFY----TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHS----- 495 (616)
Q Consensus 431 dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----- 495 (616)
||.+.+.|+.+ ++... .+.....+. + .+++..++..+. +.+.+.|..... .....+....
T Consensus 184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~ 258 (368)
T 1mda_H 184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence 78888888876 43221 111122333 3 566666666666 899999986532 1211111100
Q ss_pred --CCeeeEEEEEEcCCCCEEEEEeC-C--------CcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEE-CC
Q psy3640 496 --NEVSKVLDIAFDYSGSKLATASS-D--------QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGS-QD 562 (616)
Q Consensus 496 --~~~~~i~~~~~s~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s-~d 562 (616)
........++++|+++.++++.. . +.+.++|..+. +.+..+... .....++|+|||+ .+++.. .+
T Consensus 259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~ 336 (368)
T 1mda_H 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNG-HDSDAIIAAQDGASDNYANSAGT 336 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECC-CCcceEEECCCCCEEEEEccCCC
Confidence 00011112689999998887643 2 35679999885 444444322 2588999999998 455566 58
Q ss_pred CcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640 563 TTCRLWSTESGECIQVLKAHEDDVFSCGFN 592 (616)
Q Consensus 563 g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s 592 (616)
+.|.++|+.+++.+.++.....+ ..+++.
T Consensus 337 ~~VsVID~~t~kvv~~I~vg~~P-~~i~~~ 365 (368)
T 1mda_H 337 EVLDIYDAASDQDQSSVELDKGP-ESLSVQ 365 (368)
T ss_dssp TEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred CeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence 99999999999999999866543 345543
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=7.7e-10 Score=107.69 Aligned_cols=231 Identities=10% Similarity=0.036 Sum_probs=156.2
Q ss_pred EEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEe
Q psy3640 222 ICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 299 (616)
Q Consensus 222 ~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd 299 (616)
+..+...........|+++++ ++ +...++.|..|+. +++ ...+..+...+..++++ ++++++++...++.|..|+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVD-AQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEEC-TTSCEEEEETTTTEEEEEC
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeEC-CCCCEEEEECCCCEEEEEC
Confidence 334444556677899999998 43 6677899999998 454 34555567789999998 7888766665668999999
Q ss_pred CCCcceeEEee---e----ceeeEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEeecCCcCE
Q psy3640 300 SAKEECIQTYR---G----HSAEVTFSPDQSTFCS----CSM-------------DHTARIFNTNSGQEMHTLKAHTGPV 355 (616)
Q Consensus 300 ~~~~~~~~~~~---~----~~~~v~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~v 355 (616)
.. ++...... + ....+++.++++..++ |.. .+.|..+|..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 54322211 1 1235789999998886 332 256777887666654433 34556
Q ss_pred EEEEEcCCCCEEEEEECC------CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe
Q psy3640 356 ISLQFSSDRNMLITGSFD------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429 (616)
Q Consensus 356 ~~l~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 429 (616)
..++|+|+++.|+++... +.|.+|++.... . . ...............+++.++|++.++ +
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l-----------~-~~~~~~~~~~~~pdgi~~d~~G~lwv~-~ 256 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L-----------H-DRRHFASVPDGLPDGFCVDRGGWLWSS-S 256 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E-----------E-EEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c-----------c-CCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence 889999999988877765 689999886211 0 0 000011112334556888999985444 4
Q ss_pred CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3640 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT 475 (616)
Q Consensus 430 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~ 475 (616)
.+ .|.+|+. .++.+..+.... .+.+++|+++++.|+.++.++.
T Consensus 257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 44 4999998 566677776554 5889999999998888887643
No 235
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.32 E-value=7.5e-11 Score=116.23 Aligned_cols=299 Identities=13% Similarity=0.075 Sum_probs=196.0
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCC
Q psy3640 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ 270 (616)
Q Consensus 191 ~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~ 270 (616)
.+..++.+| .+..++.++.|..|| .+++.+.....+...+.++...+++.+..++.+ +..+|. +++.+..+....
T Consensus 23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence 445565655 466677888899999 888887666655566788888888887766655 888886 666554444333
Q ss_pred CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q psy3640 271 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT 347 (616)
Q Consensus 271 ~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 347 (616)
.......+. +..+..++.++.+..+|.. ++.......... .+...+++. +..++.++.+..+|.. ++....
T Consensus 98 ~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~ 171 (330)
T 3hxj_A 98 AIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR 171 (330)
T ss_dssp ---CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred CcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence 333333443 5778888889999999998 766655543322 235555665 6667788999999998 888777
Q ss_pred eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640 348 LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427 (616)
Q Consensus 348 ~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 427 (616)
+......+.++...+++.+.+ ++ +.+..+| . ..............+.++...+++. +..
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~----------------~g~~~~~~~~~~~~~~~~~~~~~g~-l~v 230 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-P----------------DGTEKWNFYAGYWTVTRPAISEDGT-IYV 230 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-T----------------TSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred EecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-C----------------CCcEEEEEccCCcceeceEECCCCe-EEE
Confidence 776666677788877877544 44 7888888 4 3344444444445677777777765 555
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc
Q psy3640 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD 507 (616)
Q Consensus 428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s 507 (616)
++.++.+..+|. ++..+..+......+.++...+++ .|..++.+|.+..+|.. +... ....... ..+.++..+
T Consensus 231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~-g~~~-~~~~~~~---~~~~~~~~d 303 (330)
T 3hxj_A 231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD-GTEK-WNFETGS---WIIATPVID 303 (330)
T ss_dssp EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT-SCEE-EEEECSS---CCCSCCEEC
T ss_pred EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC-CcEE-EEEEcCC---ccccceEEc
Confidence 667788888884 566666665544444556666555 56677888889999963 3222 2222211 223345666
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q psy3640 508 YSGSKLATASSDQTAKLWTVGG 529 (616)
Q Consensus 508 ~~~~~l~~~~~dg~i~vwd~~~ 529 (616)
+++. |..++.+|.+.+...+.
T Consensus 304 ~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 304 ENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TTCC-EEEECTTSCEEEEEC--
T ss_pred CCCE-EEEEcCCCeEEEEeccc
Confidence 6665 56688899988877644
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=2.7e-10 Score=112.52 Aligned_cols=250 Identities=12% Similarity=-0.017 Sum_probs=167.7
Q ss_pred cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCCCceEEEeeCC-------CC
Q psy3640 210 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKSGHEICTYRGH-------QN 271 (616)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~~~~~~~~~~h-------~~ 271 (616)
+|.+.|..+++.+.++..-..+ .+.++||++.+ ++. .++.|.+||+.+++.+.++..+ ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999999866666 79999999944 333 3789999999999999998643 12
Q ss_pred cEEEEEEeCCCCCEEEEEEC--CCeEEE--EeCCCcceeEEeeeceeeEEEcCCC-CEEEEEeCCCcEEEEECCC-----
Q psy3640 272 VVYAVAFSEPYGDKILTGSF--DKTLKL--WASAKEECIQTYRGHSAEVTFSPDQ-STFCSCSMDHTARIFNTNS----- 341 (616)
Q Consensus 272 ~V~~l~~~~~~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~dg~i~i~d~~~----- 341 (616)
....++++ |++++++++.. +..+.+ +|..+ +..+.... ...+.|++ ..+++.+.||.+.+.|+.+
T Consensus 125 ~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 125 RVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp CTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred CcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 35678999 88998888875 467888 99877 34443211 11223433 3445556788888888876
Q ss_pred CceeEE----eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec---------
Q psy3640 342 GQEMHT----LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--------- 408 (616)
Q Consensus 342 ~~~~~~----~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 408 (616)
++.... +.....+. . .+++..++..+. +.+.+.|...... ..+..+..
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~--------------~v~~~~~~~~~~~~~~~ 260 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA--------------TMKAAIDGNESGRKADN 260 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC--------------EEECCCCSSCTHHHHTT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc--------------eEEEEEEeccccccccc
Confidence 332211 11122333 3 566666666666 8999999852100 00000000
Q ss_pred -CccceeEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE-EEEEe-CCCcE
Q psy3640 409 -HSQEISNCLFNFSNSMIASSSL---------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATAS-SDQTA 476 (616)
Q Consensus 409 -~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~-~dg~i 476 (616)
.......++++++++.++++.. ++.+.++|+.+++.+..+.... ....++|+|+|++ +++.. .++.|
T Consensus 261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeE
Confidence 0111222679999998887643 2356799999999988886443 6889999999984 55666 58999
Q ss_pred EEEecCCcee
Q psy3640 477 NLWTVGGAVE 486 (616)
Q Consensus 477 ~iwd~~~~~~ 486 (616)
.++|+.+...
T Consensus 340 sVID~~t~kv 349 (368)
T 1mda_H 340 DIYDAASDQD 349 (368)
T ss_dssp EEEESSSCEE
T ss_pred EEEECCCCcE
Confidence 9999988643
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=5.1e-12 Score=126.52 Aligned_cols=256 Identities=11% Similarity=-0.021 Sum_probs=140.7
Q ss_pred CCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCc-EE-
Q psy3640 198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNV-VY- 274 (616)
Q Consensus 198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~-V~- 274 (616)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+..++. +++++.|+.|+.||.++|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578999999999999999999999988876 5555555666775 456689999999999999987776543211 10
Q ss_pred EEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcC
Q psy3640 275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354 (616)
Q Consensus 275 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 354 (616)
+..+ ..+..+++++.++.+..||..+|+.+..+..+. ...++|++..+++++.++.|+.||..+|+.+..+..+.
T Consensus 86 sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-- 160 (369)
T 2hz6_A 86 SPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-- 160 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred CceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence 0011 135678888899999999999999887776543 34567788899999999999999999998877665321
Q ss_pred EEEEEEcCCC---CEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee-EEEEccCCCEE----E
Q psy3640 355 VISLQFSSDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS-NCLFNFSNSMI----A 426 (616)
Q Consensus 355 v~~l~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l----~ 426 (616)
....++.++. ..+++++.+|.+..||.. +++.+..... ..++. ...+++++... +
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~----------------tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~ 223 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE----------------SGDVLWIQNY-ASPVVAFYVWQREGLRKVMHIN 223 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEETSCEEEEECTT----------------TCCEEEEEEC-SSCEEEEEECTTSSCEEECCEE
T ss_pred ccCccccCCccccceEEEECCCCEEEEEECC----------------CCcEEEEecC-CCceEEEEEecCCceEecccee
Confidence 1223333332 567788999999999987 4444444332 22332 23334444321 1
Q ss_pred EEeCCCcEEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 427 SSSLDGTAKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 427 ~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
.+ ++.++.+|..+++ .+..+... ..+.+. .-.+..++.++.+|.+..++..
T Consensus 224 ~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp--~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 224 VA--VETLRYLTFMSGEVGRITKWKYPFP-KETEAK--SKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred ec--ccceeeeehhcCCcccceeeeeccC-cccccc--ccccceEEEecccCCEEecCcc
Confidence 11 3345556655554 33322211 111000 0123567778888888877764
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.16 E-value=2.5e-11 Score=121.48 Aligned_cols=256 Identities=14% Similarity=0.063 Sum_probs=135.9
Q ss_pred CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee-EEE
Q psy3640 240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VTF 318 (616)
Q Consensus 240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~ 318 (616)
++.+++++.|+.|+.||..+|+.+..+.. +.+.+..+. .++..+++++.|+.|..||..+++.+..+..+... +..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 45577999999999999999999998886 444444444 55667788889999999999999887665443211 111
Q ss_pred cC---CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 319 SP---DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 319 ~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
+| .+..+++++.++.++.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t------------ 149 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT------------ 149 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS------------
T ss_pred CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC------------
Confidence 11 45677888889999999999999988876543 234566888999999999999999873
Q ss_pred cccCCcceEEEecCccceeEEEEccCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEE-EEEcCCCCEEEE--
Q psy3640 396 YRASHKPIHILTGHSQEISNCLFNFSN---SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLD-IAFDYSGSKLAT-- 469 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~-- 469 (616)
++.+....... ....++..+. ..+++++.+|.+..||.++++.+..... ..++.. ..+++++...+.
T Consensus 150 ----G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~ 222 (369)
T 2hz6_A 150 ----RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHI 222 (369)
T ss_dssp ----SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCE
T ss_pred ----CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccce
Confidence 22222221110 1112222221 5677788999999999999998888763 344433 344455532210
Q ss_pred EeCCCcEEEEecCCce----eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 470 ASSDQTANLWTVGGAV----ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG 528 (616)
Q Consensus 470 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 528 (616)
...++.++.+|..++. ............ ..+ -.+..+++++.+|.++.++..
T Consensus 223 ~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~-sp~------~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 223 NVAVETLRYLTFMSGEVGRITKWKYPFPKETE-AKS------KLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHH-HHH------HSEEEECBEECSSCEECCEEE
T ss_pred eecccceeeeehhcCCcccceeeeeccCcccc-ccc------cccceEEEecccCCEEecCcc
Confidence 0012334445543332 111100000000 000 134567778888888877764
No 239
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.14 E-value=5e-08 Score=96.62 Aligned_cols=224 Identities=13% Similarity=0.106 Sum_probs=148.6
Q ss_pred CCCCEEEE-EeCCCcEEEEECCCC----ceeEEee-------cCCcCEEEEEEcCCCCEEEEEECC------CcEEEEec
Q psy3640 320 PDQSTFCS-CSMDHTARIFNTNSG----QEMHTLK-------AHTGPVISLQFSSDRNMLITGSFD------SSIVVWDI 381 (616)
Q Consensus 320 ~~~~~l~~-~~~dg~i~i~d~~~~----~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~d------g~i~iwd~ 381 (616)
++++++++ +..++.|+++|+.+. +....+. .-...-..+...|+| ++++...+ |.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77777765 456788999998755 5566663 111234667888999 66665555 78999998
Q ss_pred ccccCCcccccccccccCCcceEEEecCcc---ceeEEEEccCCCEEEEEe-------------------CCCcEEEEeC
Q psy3640 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQ---EISNCLFNFSNSMIASSS-------------------LDGTAKLWDV 439 (616)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~ 439 (616)
. +.+.+........ .-..+.|+|+++.+++.. .+.+|.+||+
T Consensus 172 ~----------------T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~ 235 (462)
T 2ece_A 172 Y----------------SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL 235 (462)
T ss_dssp T----------------TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred C----------------CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence 7 5555555542211 233578899999888885 3678999999
Q ss_pred CCCeEEEEeecC-C-CCEEEEEE--cCCCCEEEEEe------CCCcEEEEecCCcee-eeeEE--ecc--CC--------
Q psy3640 440 RTMCCFYTLKNH-E-DEVLDIAF--DYSGSKLATAS------SDQTANLWTVGGAVE-LLQTF--YGH--SN-------- 496 (616)
Q Consensus 440 ~~~~~~~~~~~~-~-~~v~~l~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~-~~~~~--~~~--~~-------- 496 (616)
.+++.+.++... . .....+.| +|+++++++++ .+++|.+|....+.- ..+.+ ... ..
T Consensus 236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~ 315 (462)
T 2ece_A 236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP 315 (462)
T ss_dssp TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence 999888888753 1 34455655 99999988777 456787766544211 11111 000 00
Q ss_pred ---CeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCc--eEEeEEeeccc--------------cCEEEEEEecCCCEE
Q psy3640 497 ---EVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGA--VELLQTFYGHS--------------NEVSKVSFHPTGKLV 556 (616)
Q Consensus 497 ---~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~--~~~~~~~~~h~--------------~~v~~l~~spdg~~l 556 (616)
.......+.+|+||++|.++.. .+.|.+||+... .+.+....... +....++++|||++|
T Consensus 316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L 395 (462)
T 2ece_A 316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV 395 (462)
T ss_dssp GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence 0133567899999999988876 789999998532 23343332210 135789999999999
Q ss_pred EEEE
Q psy3640 557 LSGS 560 (616)
Q Consensus 557 ~s~s 560 (616)
+++.
T Consensus 396 yVaN 399 (462)
T 2ece_A 396 YVTN 399 (462)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9887
No 240
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.12 E-value=6.9e-08 Score=104.20 Aligned_cols=297 Identities=14% Similarity=0.108 Sum_probs=188.1
Q ss_pred CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc----------E-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640 240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308 (616)
Q Consensus 240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 308 (616)
++.+++++.++.|..+|..+|+.+.++...... + ..+++. +..++.++.|+.|..+|..+|+.+-+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeee
Confidence 566778888999999999999999988643221 0 122333 57888899999999999999998877
Q ss_pred eeece----eeEEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCC---c--------------------
Q psy3640 309 YRGHS----AEVTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHT---G-------------------- 353 (616)
Q Consensus 309 ~~~~~----~~v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---~-------------------- 353 (616)
+.... ..+..+| .+..++++.. +|.|..+|..+|+.+..+.... .
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~ 222 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence 65421 1111112 2345555543 5889999999999998875311 0
Q ss_pred --------CEEEEEEcCCCCEEEEEECCCc-------------------EEEEecccccCCcccccccccccCCcceEEE
Q psy3640 354 --------PVISLQFSSDRNMLITGSFDSS-------------------IVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 354 --------~v~~l~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (616)
....++++|+...++.++.++. |..+|.. +++.....
T Consensus 223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----------------tG~~~W~~ 286 (668)
T 1kv9_A 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----------------TGKLAWHY 286 (668)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----------------TCCEEEEE
T ss_pred eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----------------CCceeeEe
Confidence 1124688888888888887663 7777776 44444444
Q ss_pred ec--Cc-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCC------------CCE-------
Q psy3640 407 TG--HS-------QEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHE------------DEV------- 455 (616)
Q Consensus 407 ~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v------- 455 (616)
.. |. .+.....+..+++ .++.++.+|.++++|..+|+.+....... .++
T Consensus 287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~ 366 (668)
T 1kv9_A 287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY 366 (668)
T ss_dssp ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence 32 11 1222222233564 68889999999999999999875443211 000
Q ss_pred -----------------EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEecC
Q psy3640 456 -----------------LDIAFDYSGSKLATAS------------------------------------SDQTANLWTVG 482 (616)
Q Consensus 456 -----------------~~l~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~ 482 (616)
..++++|+...+++.. .+|.|..||+.
T Consensus 367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~ 446 (668)
T 1kv9_A 367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV 446 (668)
T ss_dssp SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence 1267777766665421 23778999998
Q ss_pred CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEE
Q psy3640 483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGS 560 (616)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s 560 (616)
++....+........ ...+...+.++++++.|+.++.||..++....+...+..-.-.-+.+..+|+ +++.++
T Consensus 447 tG~~~W~~~~~~~~~-----~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 447 KQKAAWKVPYPTHWN-----GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp TTEEEEEEEESSSCC-----CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred CCcEEEEccCCCCCc-----CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 876655443322211 1234456888999999999999999986554433222111112344456776 555544
No 241
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.12 E-value=6.4e-08 Score=102.25 Aligned_cols=289 Identities=11% Similarity=0.026 Sum_probs=177.5
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeccCCc----------E-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEE
Q psy3640 199 GTRCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV----------V-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICT 265 (616)
Q Consensus 199 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~h~~~----------I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~ 265 (616)
+..++.++. ++.|.-+|. .+|+.+-++...... + ..++. .++.+++++.|+.+..+|..+|+.+..
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 566777777 899999999 999998877533210 0 11222 255677888999999999999999887
Q ss_pred eeCCC----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeece---------------------
Q psy3640 266 YRGHQ----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGHS--------------------- 313 (616)
Q Consensus 266 ~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~--------------------- 313 (616)
..... ..+.+ .... +..++.++. ++.|..+|..+++.+-++....
T Consensus 141 ~~~~~~~~~~~~~~~P~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred ecCCCCCccceeccCCEEE---CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 75322 01111 1111 356666655 7999999999999887664321
Q ss_pred --------------------eeEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeecCC-----
Q psy3640 314 --------------------AEVTFSPDQSTFCSCSMD----------------HTARIFNTNSGQEMHTLKAHT----- 352 (616)
Q Consensus 314 --------------------~~v~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~----- 352 (616)
..+++.++...++.++.+ +.|..+|..+|+.+..++...
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 124667777777776642 359999999999988876321
Q ss_pred -----cCEEEEEEcCCCC---EEEEEECCCcEEEEecccccCCccccccc-------ccccCCcceE-------------
Q psy3640 353 -----GPVISLQFSSDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKPIH------------- 404 (616)
Q Consensus 353 -----~~v~~l~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~------------- 404 (616)
.++. +....+|+ .++.++.+|.+.++|..+........... .......++.
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 2222 22224663 57778889999999986432211100000 0000001110
Q ss_pred -EEecCcc--ceeEEEEccCCCEEEEEe-------------------------------------CCCcEEEEeCCCCeE
Q psy3640 405 -ILTGHSQ--EISNCLFNFSNSMIASSS-------------------------------------LDGTAKLWDVRTMCC 444 (616)
Q Consensus 405 -~~~~~~~--~i~~~~~~~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~ 444 (616)
...+..+ .-..++++|+..++++.. .+|.+..||+.+++.
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 0000000 013456777777666653 347899999999998
Q ss_pred EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG 493 (616)
Q Consensus 445 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 493 (616)
+.++.... .+.+..+...+..++.++.||.++.+|..++.........
T Consensus 457 ~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 457 KWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence 88776432 2222222334667888999999999999888665544433
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.10 E-value=9.5e-08 Score=100.91 Aligned_cols=330 Identities=10% Similarity=0.031 Sum_probs=193.6
Q ss_pred CCCEEEEEC-CCcEEEEeC-CCCceEEEeeCCCCc-----------EEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640 240 PYGCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI 306 (616)
Q Consensus 240 ~~~lls~s~-d~~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 306 (616)
++.+++++. ++.|.-+|. .+|+.+..+...... -..+++. +..++.++.|+.+..+|..+|+.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence 566667777 899999999 999999887643210 0123333 678888899999999999999988
Q ss_pred EEeeecee----eEEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCCcC--------------------
Q psy3640 307 QTYRGHSA----EVTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHTGP-------------------- 354 (616)
Q Consensus 307 ~~~~~~~~----~v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 354 (616)
-+...... .+..+| .+..+++++. ++.|..+|..+|+.+.++......
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 76543220 121122 2445666655 789999999999998877532110
Q ss_pred ------------------EEEEEEcCCCCEEEEEECC----------------CcEEEEecccccCCcccccccccccCC
Q psy3640 355 ------------------VISLQFSSDRNMLITGSFD----------------SSIVVWDIQYQFGTRNAYAESTYRASH 400 (616)
Q Consensus 355 ------------------v~~l~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~ 400 (616)
...+++.++...++.++.+ +.|..+|.. ++
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----------------tG 282 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----------------TG 282 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----------------TC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----------------CC
Confidence 0135666766677766542 247777776 44
Q ss_pred cceEEEecC----------ccceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCC-------------CC
Q psy3640 401 KPIHILTGH----------SQEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHE-------------DE 454 (616)
Q Consensus 401 ~~~~~~~~~----------~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~ 454 (616)
+.+...... ..++. +....+++ .++.++.+|.++++|..+++.+....... .+
T Consensus 283 ~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 283 MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 444333321 11111 12224663 57788889999999999999887765322 11
Q ss_pred E--------------------------EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcC
Q psy3640 455 V--------------------------LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY 508 (616)
Q Consensus 455 v--------------------------~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 508 (616)
+ ..++++|+..++++...+....++..... ......-...-..+..+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------~~~g~~~~g~~~~~~~~~ 435 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------YRAGQFFVGATLAMYPGP 435 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------CCTTSCCCCEEEEEEECT
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc------cccCCccccccceeccCc
Confidence 1 13466777667766665543333332210 000000000001122222
Q ss_pred CCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCccc-EE
Q psy3640 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD-VF 587 (616)
Q Consensus 509 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-V~ 587 (616)
.+. + ...+|.+..||..++...-+...+ .++....+...+..++.++.||.++.||.++|+.+..++..... -.
T Consensus 436 ~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 436 NGP-T--KKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp TST-T--SCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred ccc-C--CCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 211 0 023578888898876554433222 22323333445668888999999999999999999888644321 11
Q ss_pred EEEEeeCCCEEEE
Q psy3640 588 SCGFNYNGDTIIT 600 (616)
Q Consensus 588 ~l~~s~~~~~l~t 600 (616)
.+.+..+|+.++.
T Consensus 511 p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 511 PMTYSFKGKQYIG 523 (571)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEECCEEEEE
Confidence 2345678764443
No 243
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=1.6e-07 Score=92.99 Aligned_cols=227 Identities=11% Similarity=0.075 Sum_probs=150.5
Q ss_pred CCCCEE--EEECCCcEEEEeCCCC----ceEEEee------C-CCCcEEEEEEeCCCCCEEEEEECC------CeEEEEe
Q psy3640 239 EPYGCL--TGSYDRTCKLWDIKSG----HEICTYR------G-HQNVVYAVAFSEPYGDKILTGSFD------KTLKLWA 299 (616)
Q Consensus 239 ~~~~ll--s~s~d~~I~iwd~~~~----~~~~~~~------~-h~~~V~~l~~~~~~~~~l~s~s~d------g~i~iwd 299 (616)
.+.++| .+..+++|.++|+.+. +...+++ . ....-..+... |++ .++++..+ +.+.+.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 667744 6678899999999766 5566663 1 11234556677 777 77776665 7899999
Q ss_pred CCCcceeEEeeece------eeEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeEEeecC-C-
Q psy3640 300 SAKEECIQTYRGHS------AEVTFSPDQSTFCSCS-------------------MDHTARIFNTNSGQEMHTLKAH-T- 352 (616)
Q Consensus 300 ~~~~~~~~~~~~~~------~~v~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~-~- 352 (616)
..+.+.+.++.... -.+.|+|+++.+++.. .+.+|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 99999999886331 2257899999888874 3688999999998888887653 1
Q ss_pred cCEEEEEE--cCCCCEEEEEE------CCCcEEEEecccccCCcccccccccc-cCCcceEEEe-------cCccceeEE
Q psy3640 353 GPVISLQF--SSDRNMLITGS------FDSSIVVWDIQYQFGTRNAYAESTYR-ASHKPIHILT-------GHSQEISNC 416 (616)
Q Consensus 353 ~~v~~l~~--~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~i~~~ 416 (616)
.....+.| +|+++++.+++ .+++|.+|...... ........ ........+. +.......+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 23445555 99999888777 45688877664210 00000000 0000000000 002346789
Q ss_pred EEccCCCEEEEEeC-CCcEEEEeCC---CCeEEEEeecCC--------------CCEEEEEEcCCCCEEEEEe
Q psy3640 417 LFNFSNSMIASSSL-DGTAKLWDVR---TMCCFYTLKNHE--------------DEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 417 ~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~l~~~~~~~~l~~~~ 471 (616)
.+++++++|.++.. .+.|.+||+. +.+.+..+.... +....++++|+|++|+++.
T Consensus 327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99999999988876 5789999985 345555554321 1357899999999999886
No 244
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.07 E-value=8.5e-08 Score=103.47 Aligned_cols=289 Identities=11% Similarity=0.099 Sum_probs=183.1
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeccCCc----------E-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR 267 (616)
Q Consensus 199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~----------I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~ 267 (616)
+..+++++.++.|.-+|..+|+.+-++...... + ..+++ .+++++.++.|+.|..+|..+|+.+..+.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 667888888999999999999999887643211 0 11222 24567788899999999999999998876
Q ss_pred CCC----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeec---e--------------------
Q psy3640 268 GHQ----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGH---S-------------------- 313 (616)
Q Consensus 268 ~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~---~-------------------- 313 (616)
... ..+.+ .... +..++++.. +|.|..+|..+|+.+-++... .
T Consensus 145 ~~~~~~~~~~~~~P~v~---~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVV---KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp CSCTTSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred cCCCCCcceecCCCEEE---CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 421 11111 1111 345555543 589999999999988776421 0
Q ss_pred -----------eeEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEeec--CC-------cC
Q psy3640 314 -----------AEVTFSPDQSTFCSCSMDH-------------------TARIFNTNSGQEMHTLKA--HT-------GP 354 (616)
Q Consensus 314 -----------~~v~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~--~~-------~~ 354 (616)
..+++.|+...++.++.++ .|..+|..+|+.+..++. |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 1257888888998888776 399999999999988764 22 23
Q ss_pred EEEEEEcCCCC---EEEEEECCCcEEEEecccccCCccccccc-----cc-ccCCcce------------EEEecCcc--
Q psy3640 355 VISLQFSSDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-----TY-RASHKPI------------HILTGHSQ-- 411 (616)
Q Consensus 355 v~~l~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~------------~~~~~~~~-- 411 (616)
.....+..+|+ .++.++.+|.++++|..+........... .. .....++ ....+..+
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 33333333564 68889999999999987543210000000 00 0000110 00000000
Q ss_pred ceeEEEEccCCCEEEEEe------------------------------------CCCcEEEEeCCCCeEEEEeecCCCCE
Q psy3640 412 EISNCLFNFSNSMIASSS------------------------------------LDGTAKLWDVRTMCCFYTLKNHEDEV 455 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v 455 (616)
.-..++++|+..++++.. .+|.|..||+.+++.+....... +.
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence 011256677666555421 23789999999999988876433 23
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640 456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492 (616)
Q Consensus 456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 492 (616)
....+...+.++++++.|+.++.||..++........
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence 3334445678899999999999999988765544433
No 245
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=5.7e-07 Score=85.31 Aligned_cols=246 Identities=10% Similarity=0.011 Sum_probs=151.4
Q ss_pred CEEEEEECCCcEEEEECCCCcE-----EEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCc
Q psy3640 200 TRCLTGSYDRTCKLWDIKSGHE-----ICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNV 272 (616)
Q Consensus 200 ~~lasgs~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~ 272 (616)
.+|..+.. +.|..+++..... ...+......+..++|++++. ++ +-..++.|..++...+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 44555543 3788888765432 112222234678999998655 44 5556789999999876554444433357
Q ss_pred EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC---CCcEEEEECCCCceeE
Q psy3640 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM---DHTARIFNTNSGQEMH 346 (616)
Q Consensus 273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 346 (616)
...+++.+..+..+++-...+.|.+++........... .....++++|++..++.+.. .+.|..+++.... ..
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence 88999993344455555567899999987543322222 23456799997776665554 3678888876432 23
Q ss_pred Ee-ecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640 347 TL-KAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 347 ~~-~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 424 (616)
.+ .........+++++++..|..+. ..+.|.++|.... ........ ......++.. .+.+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----------------~~~~~~~~-~~~P~gi~~d-~~~l 221 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----------------GRRKVLEG-LQYPFAVTSY-GKNL 221 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE----------------EEEEEEEC-CCSEEEEEEE-TTEE
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----------------ceEEEecC-CCCceEEEEe-CCEE
Confidence 22 22334578999999877665555 4578999987521 11111121 1223455543 3444
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCC-CCEEEEEEcCCCC
Q psy3640 425 IASSSLDGTAKLWDVRTMCCFYTLKNHE-DEVLDIAFDYSGS 465 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~ 465 (616)
+++...++.|..+|..+++.+..+.... .....+++.|++.
T Consensus 222 yva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 222 YYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 4444456899999999999888876433 2467777777653
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.03 E-value=4.1e-07 Score=95.93 Aligned_cols=289 Identities=10% Similarity=0.034 Sum_probs=177.0
Q ss_pred CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeccCCc-----------EEEEEEc-CCCC----EEEEECCCcEEEEeCCCC
Q psy3640 199 GTRCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFS-EPYG----CLTGSYDRTCKLWDIKSG 260 (616)
Q Consensus 199 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------I~~l~fs-~~~~----lls~s~d~~I~iwd~~~~ 260 (616)
+..|++++. ++.|.-+|. .+|+.+-++...... ...++++ .++. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 567777777 889999999 999998877643211 1234553 2455 778889999999999999
Q ss_pred ceEEEeeCCCC----cEEE-EEEeCCCCCEEEEEE------CCCeEEEEeCCCcceeEEeeecee---------------
Q psy3640 261 HEICTYRGHQN----VVYA-VAFSEPYGDKILTGS------FDKTLKLWASAKEECIQTYRGHSA--------------- 314 (616)
Q Consensus 261 ~~~~~~~~h~~----~V~~-l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~--------------- 314 (616)
+.+........ .+.+ -... +..+++++ .++.|..+|..+|+.+-++.....
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CEEEeecCCCCCccceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 99887653220 1111 1112 34566655 379999999999998866643211
Q ss_pred --------------------------eEEEcCCCCEEEEEeCCC----------------cEEEEECCCCceeEEeecCC
Q psy3640 315 --------------------------EVTFSPDQSTFCSCSMDH----------------TARIFNTNSGQEMHTLKAHT 352 (616)
Q Consensus 315 --------------------------~v~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~ 352 (616)
..++.++...++.++.++ .|..+|..+|+.+..++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 235667788888877653 79999999999988876432
Q ss_pred c----------CEEEEEEc-CCC---CEEEEEECCCcEEEEecccccCCccccccc-------ccccCCcce--------
Q psy3640 353 G----------PVISLQFS-SDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKPI-------- 403 (616)
Q Consensus 353 ~----------~v~~l~~~-~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~-------- 403 (616)
. ++. +... .+| ..++.++.+|.+.++|..+........... .......++
T Consensus 299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~ 377 (599)
T 1w6s_A 299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR 377 (599)
T ss_dssp TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence 1 222 2222 467 467778899999999986432211100000 000000110
Q ss_pred ------EEEecCc--cceeEEEEccCCCEEEEEe---------------------------------------CCCcEEE
Q psy3640 404 ------HILTGHS--QEISNCLFNFSNSMIASSS---------------------------------------LDGTAKL 436 (616)
Q Consensus 404 ------~~~~~~~--~~i~~~~~~~~~~~l~~~~---------------------------------------~dg~i~i 436 (616)
....+.. ..-..++++|+..++++.. ..|.+..
T Consensus 378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A 457 (599)
T 1w6s_A 378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA 457 (599)
T ss_dssp TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence 0000000 0012344555544443321 3478999
Q ss_pred EeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640 437 WDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492 (616)
Q Consensus 437 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 492 (616)
||+.+++.+...... .+...-.+...+.+++.++.|+.++.||..++..+.+...
T Consensus 458 ~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 458 YNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp ECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 999999988877532 1221111223467888899999999999999876655533
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.03 E-value=7.2e-07 Score=84.61 Aligned_cols=248 Identities=10% Similarity=0.022 Sum_probs=151.0
Q ss_pred EEEEEeCCCcEEEEECCCCce-----eEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccc
Q psy3640 324 TFCSCSMDHTARIFNTNSGQE-----MHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYR 397 (616)
Q Consensus 324 ~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 397 (616)
+|+.+.. +.|+.+++..... ...+......+..++++++++.|+.+. ..+.|..++...
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-------------- 67 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-------------- 67 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS--------------
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC--------------
Confidence 3444442 4677777765432 111222234568999999766665554 467899998752
Q ss_pred cCCcceEEEecCccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC---C
Q psy3640 398 ASHKPIHILTGHSQEISNCLFNFSNSMIASS-SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS---D 473 (616)
Q Consensus 398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d 473 (616)
................+++++++..++.+ ...+.|.+++...................++++|++..|+.+.. .
T Consensus 68 --~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~ 145 (267)
T 1npe_A 68 --GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN 145 (267)
T ss_dssp --CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred --CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence 22222222223466789999876555544 45678999998654322222222256789999997666665554 3
Q ss_pred CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT 552 (616)
Q Consensus 474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd 552 (616)
+.|..+++..... ..+.. ........+++++++..|+.+. ..+.|.+++.... ........ ......++..
T Consensus 146 ~~I~~~~~dg~~~--~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d-- 217 (267)
T 1npe_A 146 PKIETSHMDGTNR--RILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY-- 217 (267)
T ss_dssp CEEEEEETTSCCC--EEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE--
T ss_pred cEEEEEecCCCCc--EEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe--
Confidence 6788888765322 11211 1223456789999877766555 4678999999763 22222222 2334566654
Q ss_pred CCEEEEEE-CCCcEEEecCCcCeeeeEeccCc-ccEEEEEEeeCCC
Q psy3640 553 GKLVLSGS-QDTTCRLWSTESGECIQVLKAHE-DDVFSCGFNYNGD 596 (616)
Q Consensus 553 g~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~ 596 (616)
+..|..+. .++.|..+|..+++.+..+.... .....+++.|++.
T Consensus 218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 44555554 56899999999999998886543 2366788888764
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.01 E-value=2.9e-08 Score=101.94 Aligned_cols=219 Identities=12% Similarity=0.030 Sum_probs=147.2
Q ss_pred CCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecC-ccceeEEEE-c-cCCCEEEEEe---------
Q psy3640 363 DRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-SQEISNCLF-N-FSNSMIASSS--------- 429 (616)
Q Consensus 363 ~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-~-~~~~~l~~~~--------- 429 (616)
||+++.+... ++.|.+.|+. ..+....+.-. ......+++ + |+++++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~----------------t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d 163 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCD----------------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND 163 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETT----------------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred CCCEEEEEcCCCCEEEEEECC----------------CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCC
Confidence 7777777665 4579999997 55555533322 234667776 5 8999998885
Q ss_pred ---------CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------------------
Q psy3640 430 ---------LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-------------------------- 474 (616)
Q Consensus 430 ---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------------------------- 474 (616)
.++.+.+.|..+.+...++.-.. ....++++|+|+++++.+.+.
T Consensus 164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp SSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred CcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 24579999999999888887433 456788999999999988653
Q ss_pred ------------cEEEEecCC--ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCce--------
Q psy3640 475 ------------TANLWTVGG--AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAV-------- 531 (616)
Q Consensus 475 ------------~i~iwd~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~-------- 531 (616)
.+.+.|..+ .......+... ....++.++|||+++++++ .+..|.++|+.+..
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~ 318 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD 318 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEecC----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence 233444433 11101111111 1123589999999877766 58899999998532
Q ss_pred ---EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc----------CeeeeEeccCcccEE-----EEEEee
Q psy3640 532 ---ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES----------GECIQVLKAHEDDVF-----SCGFNY 593 (616)
Q Consensus 532 ---~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~V~-----~l~~s~ 593 (616)
...... .-......++|+|+|...++...|++|.+||+++ .+.+.++..|-.+-. .+.++|
T Consensus 319 ~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~ 397 (595)
T 1fwx_A 319 PRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA 397 (595)
T ss_dssp GGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred cccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence 122222 2335678999999994445566899999999987 567778877755421 124579
Q ss_pred CCCEEEEeeC
Q psy3640 594 NGDTIITASK 603 (616)
Q Consensus 594 ~~~~l~t~s~ 603 (616)
||++|+++..
T Consensus 398 DGk~l~~~Nk 407 (595)
T 1fwx_A 398 TNDWLVCLSK 407 (595)
T ss_dssp CSSEEEEEES
T ss_pred CCCEEEEcCC
Confidence 9999998754
No 249
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.98 E-value=9.1e-07 Score=93.32 Aligned_cols=299 Identities=10% Similarity=0.025 Sum_probs=183.4
Q ss_pred CCCEEEEEC-CCcEEEEeC-CCCceEEEeeCCCCc-----------EEEEEEeCCCCCE----EEEEECCCeEEEEeCCC
Q psy3640 240 PYGCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFSEPYGDK----ILTGSFDKTLKLWASAK 302 (616)
Q Consensus 240 ~~~lls~s~-d~~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~~----l~s~s~dg~i~iwd~~~ 302 (616)
++.+++++. ++.|.-+|. .+|+.+.++...... ...++++ |.+.. ++.++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~-p~~g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW-PGDGKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEE-CCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEE-ecCCcceeEEEEEcCCCEEEEEECCC
Confidence 556667777 899999999 999999888643221 1234553 23444 88888999999999999
Q ss_pred cceeEEeeecee----eEEEcC--CCCEEEEEe------CCCcEEEEECCCCceeEEeecCCcCE---------------
Q psy3640 303 EECIQTYRGHSA----EVTFSP--DQSTFCSCS------MDHTARIFNTNSGQEMHTLKAHTGPV--------------- 355 (616)
Q Consensus 303 ~~~~~~~~~~~~----~v~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v--------------- 355 (616)
|+.+-....... .+.-.| .+..+++++ .+|.|+.+|.++|+.+..+.......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 998866543220 111111 134555555 37999999999999988776322110
Q ss_pred -----------------------EEEEEcCCCCEEEEEECCC----------------cEEEEecccccCCccccccccc
Q psy3640 356 -----------------------ISLQFSSDRNMLITGSFDS----------------SIVVWDIQYQFGTRNAYAESTY 396 (616)
Q Consensus 356 -----------------------~~l~~~~~~~~l~~g~~dg----------------~i~iwd~~~~~~~~~~~~~~~~ 396 (616)
..+++.++..+++.++.++ .|..+|.+
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-------------- 286 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-------------- 286 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT--------------
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC--------------
Confidence 1346667777888877653 67777776
Q ss_pred ccCCcceEEEecCcc----------ceeEEEEc-cCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCC----------
Q psy3640 397 RASHKPIHILTGHSQ----------EISNCLFN-FSN---SMIASSSLDGTAKLWDVRTMCCFYTLKNHE---------- 452 (616)
Q Consensus 397 ~~~~~~~~~~~~~~~----------~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------- 452 (616)
+++....+..... ++. +... .++ ..++.++.+|.++++|.++++.+.......
T Consensus 287 --TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 287 --TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp --TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred --CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 4444433332211 111 1111 456 467778899999999999999887665221
Q ss_pred ---CCE--------------------------EEEEEcCCCCEEEEEe--------------------------------
Q psy3640 453 ---DEV--------------------------LDIAFDYSGSKLATAS-------------------------------- 471 (616)
Q Consensus 453 ---~~v--------------------------~~l~~~~~~~~l~~~~-------------------------------- 471 (616)
.++ ..++++|+..++++..
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 111 2456777766655432
Q ss_pred -------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE
Q psy3640 472 -------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544 (616)
Q Consensus 472 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v 544 (616)
..|.+..||+.++....+.......... .+...+..++.++.|+.++.||.+++..+-+...+.....
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-----TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-----ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 2367777888776554443322211111 1223577888899999999999999766554433322222
Q ss_pred EEEEEecCCC-EEEEEEC
Q psy3640 545 SKVSFHPTGK-LVLSGSQ 561 (616)
Q Consensus 545 ~~l~~spdg~-~l~s~s~ 561 (616)
.-+.+..+|+ ++++.+.
T Consensus 519 ~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp CCEEEEETTEEEEEEEEC
T ss_pred ccEEEEeCCEEEEEEEcc
Confidence 3355667876 4444433
No 250
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.96 E-value=7.6e-05 Score=79.30 Aligned_cols=366 Identities=7% Similarity=0.028 Sum_probs=205.5
Q ss_pred CcceEEEEECCCCCEEEEE-ECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEC--CCcEEEEeCCCCce
Q psy3640 187 LLPLTNITFDKFGTRCLTG-SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSY--DRTCKLWDIKSGHE 262 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~--d~~I~iwd~~~~~~ 262 (616)
......+++++.+..|..+ ...+.|.+.+++.......+...-.....|++.|.+. +..+.. .+.|...+++....
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~ 162 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR 162 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence 3568899999966655544 5578899999876544333334445677899988754 444442 45677777664433
Q ss_pred EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMDHTARIFNT 339 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~d~ 339 (616)
.......-.....+++.+.++...++-...+.|...++.......... .+...+++..+ ..+++-...+.|...|.
T Consensus 163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~ 241 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK 241 (619)
T ss_dssp EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence 333333455788999994444445554556788888887543332222 33445666655 44444445678999998
Q ss_pred CCCceeEEeecCCcCEEEEEEc--------------------------C-----------------CC--------CEEE
Q psy3640 340 NSGQEMHTLKAHTGPVISLQFS--------------------------S-----------------DR--------NMLI 368 (616)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~l~~~--------------------------~-----------------~~--------~~l~ 368 (616)
.+++....+.........+++. | ++ .+|+
T Consensus 242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll 321 (619)
T 3s94_A 242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321 (619)
T ss_dssp SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence 7776544432211111111110 1 10 0111
Q ss_pred EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEE
Q psy3640 369 TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYT 447 (616)
Q Consensus 369 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 447 (616)
.+. .+.|+..++... ...........-..+.+++|.+.+..|+.+. ..+.|+.+++........
T Consensus 322 ~~~-~~~i~~i~l~~~--------------~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v 386 (619)
T 3s94_A 322 LAR-RTDLRRISLDTP--------------DFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386 (619)
T ss_dssp EEE-SSCEEEEESSST--------------TCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred EEc-ccceEEEecCCC--------------ccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEE
Confidence 111 223333333210 0001100001123456788888655555444 567888888875433333
Q ss_pred eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC--CCcEEE
Q psy3640 448 LKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS--DQTAKL 524 (616)
Q Consensus 448 ~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v 524 (616)
+...-.....+++++.+. +.++-+..+.|.+.++.+... ..+.. .......+++++|....|+.... ...|..
T Consensus 387 ~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r 462 (619)
T 3s94_A 387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIER 462 (619)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEE
Confidence 333335677899997555 445555678899998876432 22221 12344678999998666666554 356777
Q ss_pred EecCCceEEeEEeeccccCEEEEEEecCCCEEEEEEC-CCcEEEecCCcC
Q psy3640 525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ-DTTCRLWSTESG 573 (616)
Q Consensus 525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~ 573 (616)
.+++..... ......-...+.+++++++..|..+.. .+.|...++...
T Consensus 463 ~~~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 463 AALDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EccCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 777653222 222333456889999998777776654 467888887543
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.94 E-value=1.7e-06 Score=91.43 Aligned_cols=297 Identities=13% Similarity=0.071 Sum_probs=181.7
Q ss_pred CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc---------EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee
Q psy3640 240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV---------VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR 310 (616)
Q Consensus 240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 310 (616)
++.+++++.++.|.-+|..+|+.+.++...... -..+++. +..++.++.|+.|.-+|..+|+.+-...
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 566667776555999999999999888644321 0122333 5788889999999999999999886654
Q ss_pred ece---------eeEEEcC--CCC-EEEEEeC------CCcEEEEECCCCceeEEeecCCcCE-----------------
Q psy3640 311 GHS---------AEVTFSP--DQS-TFCSCSM------DHTARIFNTNSGQEMHTLKAHTGPV----------------- 355 (616)
Q Consensus 311 ~~~---------~~v~~~~--~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v----------------- 355 (616)
... ..+.... +++ .+++++. +|.|..+|..+|+.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 322 1111111 233 5666553 7899999999999888664321100
Q ss_pred ------------------------EEEEEcCCCCEEEEEECC------------------------CcEEEEecccccCC
Q psy3640 356 ------------------------ISLQFSSDRNMLITGSFD------------------------SSIVVWDIQYQFGT 387 (616)
Q Consensus 356 ------------------------~~l~~~~~~~~l~~g~~d------------------------g~i~iwd~~~~~~~ 387 (616)
..++++|+..+++.+..+ +.|..+|..
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~----- 299 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS----- 299 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT-----
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC-----
Confidence 134666777778777642 467777776
Q ss_pred cccccccccccCCcceEEEec--Ccc----ce-eEEEEc---cCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC-
Q psy3640 388 RNAYAESTYRASHKPIHILTG--HSQ----EI-SNCLFN---FSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHED- 453 (616)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~--~~~----~i-~~~~~~---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~- 453 (616)
+++..-.... |.. .+ .-+... .+++ .++.++.+|.++++|.++++.+........
T Consensus 300 -----------TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~ 368 (582)
T 1flg_A 300 -----------SGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI 368 (582)
T ss_dssp -----------TCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred -----------CCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence 4444444332 210 01 111222 3563 788899999999999999998876653320
Q ss_pred ------------CE--------------------------------EEEEEcCCCCEEEEEe------------------
Q psy3640 454 ------------EV--------------------------------LDIAFDYSGSKLATAS------------------ 471 (616)
Q Consensus 454 ------------~v--------------------------------~~l~~~~~~~~l~~~~------------------ 471 (616)
++ ..++++|+..++++..
T Consensus 369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 00 1346666655555432
Q ss_pred ---------------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEE
Q psy3640 472 ---------------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQT 536 (616)
Q Consensus 472 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 536 (616)
.+|.+..||+.++....+.......... .....+.+++.++.|+.++.||.+++..+.+.
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 2577888998887655444332221111 11224778888999999999999997555443
Q ss_pred eeccccCEEEEEEecCCC-EEEEEE
Q psy3640 537 FYGHSNEVSKVSFHPTGK-LVLSGS 560 (616)
Q Consensus 537 ~~~h~~~v~~l~~spdg~-~l~s~s 560 (616)
..+......-+.+..+|+ ++++.+
T Consensus 524 ~~~~g~~a~P~~y~~~G~qYv~~~~ 548 (582)
T 1flg_A 524 QTGSGIVSPPITWEQDGEQYLGVTV 548 (582)
T ss_dssp ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCCCcccCceEEEECCEEEEEEEc
Confidence 332222223366677887 444443
No 252
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.94 E-value=9.1e-08 Score=98.25 Aligned_cols=265 Identities=10% Similarity=0.023 Sum_probs=179.1
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEec---------------------------------cC------CcEEEEEEcC---
Q psy3640 202 CLTGSYDRTCKLWDIKSGHEICTYRG---------------------------------HQ------NVVYAVAFSE--- 239 (616)
Q Consensus 202 lasgs~dg~i~iwd~~~~~~~~~~~~---------------------------------h~------~~I~~l~fs~--- 239 (616)
+.+|+..|.++|+-+.++++++.+.- +. +..-....|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 56788999999999999988877631 01 1112233443
Q ss_pred --CCCEE--EEECCCcEEEEeCCCCceEEEeeC-CCCcEEEEEEeC-CCCCEEEEEE------------------CCCeE
Q psy3640 240 --PYGCL--TGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSE-PYGDKILTGS------------------FDKTL 295 (616)
Q Consensus 240 --~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~-~~~~~l~s~s------------------~dg~i 295 (616)
||+++ ....++.|.+.|+.+.+....+.- .......+++.. |++.++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 67744 555677899999999998875542 235688899865 7888888885 24579
Q ss_pred EEEeCCCcceeEEee--eceeeEEEcCCCCEEEEEeCCC--------------------------------------cEE
Q psy3640 296 KLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSCSMDH--------------------------------------TAR 335 (616)
Q Consensus 296 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~~~dg--------------------------------------~i~ 335 (616)
.+.|.++.+...++. +....++++|+++++++.+.+. .|.
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999998887765 4445678999999999888553 467
Q ss_pred EEECCC--Cce-eEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640 336 IFNTNS--GQE-MHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411 (616)
Q Consensus 336 i~d~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (616)
+.|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+....... ..... ....+.....-..
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~----~~~l~-~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF----YENAD-PRSAVVAEPELGL 331 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH----HSCCC-GGGGEEECCBCCS
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc----ccccC-cccceEEEcCCCC
Confidence 777776 444 444543 23457899999999877665 57899999997431000 00000 1111222222334
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeecCCCCEE-----EEEEcCCCCEEEEEeC
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT----------MCCFYTLKNHEDEVL-----DIAFDYSGSKLATASS 472 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~-----~l~~~~~~~~l~~~~~ 472 (616)
....++|+++|...++.-.|+.|.+||+.+ .+.+..+..|-.+-. .+.++|||++|+++..
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 567889999995555666789999999977 566777776654321 1245799999998854
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.93 E-value=1.1e-06 Score=92.82 Aligned_cols=310 Identities=12% Similarity=0.077 Sum_probs=181.1
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEeccCCcE---------EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCC
Q psy3640 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV---------YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGH 269 (616)
Q Consensus 199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I---------~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h 269 (616)
+..+++++.++.|.-+|.++|+.+-++....... ..++. .++.++.++.|+.|..+|..+|+.+......
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4566666664459999999999988876443210 11222 2566778899999999999999998887643
Q ss_pred CC----cEE-E-EEEe-CCCCC-EEEEEE------CCCeEEEEeCCCcceeEEeeece----------------------
Q psy3640 270 QN----VVY-A-VAFS-EPYGD-KILTGS------FDKTLKLWASAKEECIQTYRGHS---------------------- 313 (616)
Q Consensus 270 ~~----~V~-~-l~~~-~~~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~---------------------- 313 (616)
.. .+. + +... ..+++ .+++++ .++.|.-+|..+|+.+-......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 1 1111 01223 566655 37899999999998776543210
Q ss_pred ----------------------eeEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeEE
Q psy3640 314 ----------------------AEVTFSPDQSTFCSCSM--------------------D----HTARIFNTNSGQEMHT 347 (616)
Q Consensus 314 ----------------------~~v~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~ 347 (616)
...++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 11356677788877763 2 5799999999999988
Q ss_pred eec--CC--------cCEEEEEEc-CCCC---EEEEEECCCcEEEEecccccCCccccccc-------ccccCCcc----
Q psy3640 348 LKA--HT--------GPVISLQFS-SDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKP---- 402 (616)
Q Consensus 348 ~~~--~~--------~~v~~l~~~-~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~---- 402 (616)
++. |. .++. +... .+|+ .++.++.+|.++++|..+........... .......+
T Consensus 307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 753 21 1222 2222 4664 78889999999999986432211100000 00000000
Q ss_pred ----------------eEEEecCcc--ceeEEEEccCCCEEEEEe---------------------------------CC
Q psy3640 403 ----------------IHILTGHSQ--EISNCLFNFSNSMIASSS---------------------------------LD 431 (616)
Q Consensus 403 ----------------~~~~~~~~~--~i~~~~~~~~~~~l~~~~---------------------------------~d 431 (616)
........+ .-..++++|+..++++.. .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 001111000 012345566554444432 25
Q ss_pred CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC
Q psy3640 432 GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS 511 (616)
Q Consensus 432 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 511 (616)
|.+..||+.+++.+....... ++..-.....+.+++.++.||.++.||..++..+.+..........+ +.+..+|+
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P---~~y~~~G~ 541 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGE 541 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred ceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc---eEEEECCE
Confidence 789999999999887776432 22221122246688889999999999999886665544332222122 34455666
Q ss_pred EEE
Q psy3640 512 KLA 514 (616)
Q Consensus 512 ~l~ 514 (616)
.++
T Consensus 542 qYv 544 (582)
T 1flg_A 542 QYL 544 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 254
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=3.5e-07 Score=85.17 Aligned_cols=190 Identities=6% Similarity=0.038 Sum_probs=134.6
Q ss_pred eEEEEECCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe
Q psy3640 190 LTNITFDKFGTRCLTGSY--DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 190 i~~v~~s~~g~~lasgs~--dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~ 266 (616)
...++|+|+|.+.++.+. ++.|.+.|..+++.+..+.-.. .....+++..+.-+++.-.++.+.++|..+.+.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i 102 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF 102 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence 689999999755555443 5799999999999998876322 2233556653322446667899999999999999888
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--------eeeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--------SAEVTFSPDQSTFCSCSMDHTARIFN 338 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~l~~~~~dg~i~i~d 338 (616)
......-.. ++ ++++.++++..++.|.++|..+.+.+..+.-. ...+.+. ++...+....++.|.+.|
T Consensus 103 ~~g~~~g~g--lt-~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID 178 (266)
T 2iwa_A 103 THQMKDGWG--LA-TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS 178 (266)
T ss_dssp ECCSSSCCE--EE-ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred ECCCCCeEE--EE-ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence 633111133 44 45666666667899999999999888776532 2345666 665555555678999999
Q ss_pred CCCCceeEEeecCC-------------cCEEEEEEcCCCCEEE-EEECCCcEEEEeccc
Q psy3640 339 TNSGQEMHTLKAHT-------------GPVISLQFSSDRNMLI-TGSFDSSIVVWDIQY 383 (616)
Q Consensus 339 ~~~~~~~~~~~~~~-------------~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~ 383 (616)
..+++.+..+.... .....++|+|+++.++ ++...+.+...++..
T Consensus 179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 99999988886321 3568999999987555 555678888888863
No 255
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.85 E-value=0.00011 Score=78.16 Aligned_cols=373 Identities=7% Similarity=-0.048 Sum_probs=199.1
Q ss_pred CCcEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCce-EEEeeCCCCcEEEEEEeCCCC
Q psy3640 208 DRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYG 283 (616)
Q Consensus 208 dg~i~iwd~~~~~-~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~ 283 (616)
...|+..|+.... ....+...-.....++|++.+. +. +-...+.|..+++..... ...+.........+++.+..+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 3467888877543 2223333455678999998665 33 444578899999876542 233443346788999984455
Q ss_pred CEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecCCcCEEEE
Q psy3640 284 DKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAHTGPVISL 358 (616)
Q Consensus 284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l 358 (616)
++.++-...+.|.+.++.......... .....+++.|.+..|+.... .+.|...++............-.....+
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl 176 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 176 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence 556666667899999987654333221 23456899998776666553 3667777776433333333334567899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy3640 359 QFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437 (616)
Q Consensus 359 ~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 437 (616)
++++++..|..+. ..+.|...|+... .......+.......+++..+ .+.++-...+.|...
T Consensus 177 ald~~~~~LY~aD~~~~~I~~~~~dG~----------------~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~ 239 (619)
T 3s94_A 177 TLDYEEQKLYWADAKLNFIHKSNLDGT----------------NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC 239 (619)
T ss_dssp EEETTTTEEEEEETTTCCEEEESSSCC----------------EEC---------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred EEEccCCEEEEEeCCCCeEEEecCCCC----------------ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence 9999766666554 4567888877521 111111111122235555544 344444455678888
Q ss_pred eCCCCeEEEEeecCCCCEEE-------------------------EEE-----------cCCC---------------CE
Q psy3640 438 DVRTMCCFYTLKNHEDEVLD-------------------------IAF-----------DYSG---------------SK 466 (616)
Q Consensus 438 d~~~~~~~~~~~~~~~~v~~-------------------------l~~-----------~~~~---------------~~ 466 (616)
|..+++....+........+ +++ .|.| .+
T Consensus 240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~ 319 (619)
T 3s94_A 240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL 319 (619)
T ss_dssp ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence 87666443332211100111 111 1111 11
Q ss_pred EEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEE
Q psy3640 467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVS 545 (616)
Q Consensus 467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~ 545 (616)
|+.+ ..+.|+..++......... ..........++++++.+..|+.+. ..+.|..+++...... ......-....
T Consensus 320 Ll~~-~~~~i~~i~l~~~~~~~~~--~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~-~v~~~~~~~p~ 395 (619)
T 3s94_A 320 LLLA-RRTDLRRISLDTPDFTDIV--LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ-FVVTAQIAHPD 395 (619)
T ss_dssp EEEE-ESSCEEEEESSSTTCCCEE--CCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCC
T ss_pred EEEE-cccceEEEecCCCccceeE--EeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE-EEEECCCCCcC
Confidence 2222 2334555555432111100 0111223466789998766666555 5788888888763221 22222334677
Q ss_pred EEEEecCCCEE-EEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640 546 KVSFHPTGKLV-LSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 546 ~l~~spdg~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~ 601 (616)
.+++.+.+..| .+-+..+.|.+.++........+...-....++++.|....|..+
T Consensus 396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t 452 (619)
T 3s94_A 396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWT 452 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence 89998755544 444566889999886443222223334567889999874444443
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=5.1e-06 Score=80.41 Aligned_cols=239 Identities=10% Similarity=-0.031 Sum_probs=143.5
Q ss_pred ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC
Q psy3640 343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN 422 (616)
Q Consensus 343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 422 (616)
+.+..+.. ......++|+++++++++-..++.|..||... ..... .........+++.+++
T Consensus 23 ~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-----------------~~~~~-~~~~~~p~gia~~~dG 83 (306)
T 2p4o_A 23 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-----------------NQQIH-ATVEGKVSGLAFTSNG 83 (306)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-----------------CEEEE-EECSSEEEEEEECTTS
T ss_pred eEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-----------------ceEEE-EeCCCCceeEEEcCCC
Confidence 34444432 24568899999998777766788999888641 11111 1223457789999999
Q ss_pred CEEEEEeCCC--cEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec------
Q psy3640 423 SMIASSSLDG--TAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG------ 493 (616)
Q Consensus 423 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------ 493 (616)
+++++..... .|..+|..+++....... .......++..+++..+++-..++.|..+|.............
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 9766654432 477778777765433221 2233455666665544555446888888887653211110000
Q ss_pred cCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCC-ce-EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640 494 HSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGG-AV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
..........+ +++++.|+++. ..+.|..+++.. +. .....+.. ......++++++|++.++....+.|.+++.
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~ 240 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP 240 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence 01111223334 78887766555 578899999864 11 01111111 134567899999988777777889999997
Q ss_pred CcCeee--eEeccCcccEEEEEEe---eCCCEEEEeeCC
Q psy3640 571 ESGECI--QVLKAHEDDVFSCGFN---YNGDTIITASKD 604 (616)
Q Consensus 571 ~~~~~~--~~~~~h~~~V~~l~~s---~~~~~l~t~s~D 604 (616)
. |+.. ..+.......++++|. |+++.|..++..
T Consensus 241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 5 6653 2344334568899998 887777665543
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=3.1e-06 Score=82.65 Aligned_cols=234 Identities=11% Similarity=0.081 Sum_probs=149.2
Q ss_pred CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec--------------------cCCcEEEEEEcC-CCCEEE
Q psy3640 187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG--------------------HQNVVYAVAFSE-PYGCLT 245 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~--------------------h~~~I~~l~fs~-~~~lls 245 (616)
-....+++++++|+++.++..++.|..||..+++.. .+.. ....+..+++.+ ++.++.
T Consensus 18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 345678999999998888989999999998766543 2321 113578999997 788887
Q ss_pred EECCCcEEEEeCCCCceEEEee---C-CCCcEEEEEEeCC-CCCEEEEEEC-----------------CCeEEEEeCCCc
Q psy3640 246 GSYDRTCKLWDIKSGHEICTYR---G-HQNVVYAVAFSEP-YGDKILTGSF-----------------DKTLKLWASAKE 303 (616)
Q Consensus 246 ~s~d~~I~iwd~~~~~~~~~~~---~-h~~~V~~l~~~~~-~~~~l~s~s~-----------------dg~i~iwd~~~~ 303 (616)
+...+.|..+|..+++...... + .......+++. + +++..++-.. ++.|..+|..++
T Consensus 97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 7777779999987664322111 1 12357889998 6 7877666432 367888888776
Q ss_pred ceeEEee--eceeeEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEEC------
Q psy3640 304 ECIQTYR--GHSAEVTFSPDQSTFCSC-SMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSF------ 372 (616)
Q Consensus 304 ~~~~~~~--~~~~~v~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~------ 372 (616)
+...... .....++++|+++.++++ +..+.|..|++.... ....+....+ ...++++++|++.++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~ 254 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM 254 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence 5433222 234568999999976665 556889999987521 1112211223 688999999986666543
Q ss_pred ----CCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy3640 373 ----DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441 (616)
Q Consensus 373 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 441 (616)
.+.|..+|.. ...+..+... ...+..+++ .++.+.++...++.|..+++..
T Consensus 255 ~~~~~~~v~~~d~~-----------------G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 255 HGRVDPKGIKFDEF-----------------GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TSCEEEEEEEECTT-----------------SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cCCCccEEEEECCC-----------------CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 3556677642 2333333322 234555555 3555555555677888888753
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=2e-06 Score=84.01 Aligned_cols=233 Identities=12% Similarity=0.046 Sum_probs=146.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe--------------------cCccce
Q psy3640 354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--------------------GHSQEI 413 (616)
Q Consensus 354 ~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~i 413 (616)
...++++++++++++++..++.|..|+.... . ...+. ......
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p 82 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS----------------G-FVDFAYASPYWNKAFCENSTDAEKRPLCGRT 82 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTT----------------C-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCC----------------c-eEEEecccccccccccccccchhccccCCCC
Confidence 4467889999987888888999999987521 1 11111 011246
Q ss_pred eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----CCCCEEEEEEcC-CCCEEEEEeC---------------
Q psy3640 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-----HEDEVLDIAFDY-SGSKLATASS--------------- 472 (616)
Q Consensus 414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~-~~~~l~~~~~--------------- 472 (616)
..+++.+++..|+++...+.+..+|..++.. ..+.. .......+++++ +|...++...
T Consensus 83 ~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~ 161 (322)
T 2fp8_A 83 YDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS 161 (322)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred ceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence 7788887334455555555688899776532 22211 123578899999 8977666433
Q ss_pred --CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE-eCCCcEEEEecCCc----eEEeEEeeccccCEE
Q psy3640 473 --DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAKLWTVGGA----VELLQTFYGHSNEVS 545 (616)
Q Consensus 473 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~ 545 (616)
++.+..|+..+..... .... ......++++++++.|+++ ..++.|.+|++... ...... ..+ ..
T Consensus 162 ~~~g~v~~~d~~~~~~~~-~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~ 232 (322)
T 2fp8_A 162 DKTGRLIKYDPSTKETTL-LLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PG 232 (322)
T ss_dssp CCCEEEEEEETTTTEEEE-EEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EE
T ss_pred CCCceEEEEeCCCCEEEE-eccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CC
Confidence 3668888876542211 1111 1123358999999977666 45689999998642 122222 223 78
Q ss_pred EEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCc----ccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 546 KVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHE----DDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 546 ~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
.+++.++|++.++... .+.|..+|. .|+.+..+.... ..+..+++ .++++.++....+.|.+++
T Consensus 233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence 8999999987666544 467888887 477777665432 34666766 4677777777788999998
Q ss_pred cCCC
Q psy3640 612 SMNR 615 (616)
Q Consensus 612 ~~~~ 615 (616)
+..+
T Consensus 311 ~~~~ 314 (322)
T 2fp8_A 311 YDKK 314 (322)
T ss_dssp C---
T ss_pred cccc
Confidence 7643
No 259
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.83 E-value=1.1e-06 Score=81.82 Aligned_cols=200 Identities=6% Similarity=0.016 Sum_probs=140.1
Q ss_pred EEEEEeccCC--cEEEEEEcCCCCEEEEE-C--CCcEEEEeCCCCceEEEeeCCC-CcEEEEEEeCCCCCEEEEEE-CCC
Q psy3640 221 EICTYRGHQN--VVYAVAFSEPYGCLTGS-Y--DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGS-FDK 293 (616)
Q Consensus 221 ~~~~~~~h~~--~I~~l~fs~~~~lls~s-~--d~~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s-~dg 293 (616)
.+.++. |.. ....++|++++.+..++ . ++.|++.|+.+++.+..+.-.. .....+++. ++.+..+. .++
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~~~ 86 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVWLKN 86 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEETTCS
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEecCC
Confidence 444553 443 36899999987765443 2 6899999999999988876322 233456665 44555444 578
Q ss_pred eEEEEeCCCcceeEEeeec-eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEE
Q psy3640 294 TLKLWASAKEECIQTYRGH-SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNML 367 (616)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l 367 (616)
.+.++|..+.+.+.++... .....+++++..++++..++.|.++|..+.+.+..+.... .....+.|. ++...
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 9999999999999888654 4455677888888887788999999999998888776322 236678888 66544
Q ss_pred EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC-------------ccceeEEEEccCCCEEEE-EeCCCc
Q psy3640 368 ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-------------SQEISNCLFNFSNSMIAS-SSLDGT 433 (616)
Q Consensus 368 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~-~~~dg~ 433 (616)
+....++.|.+.|.. +.+.+..+... ......++++|+++.+++ +...+.
T Consensus 166 vn~~~~~~V~vID~~----------------tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 166 ANIWQTDCIARISAK----------------DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp EEETTSSEEEEEETT----------------TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred EecCCCCeEEEEECC----------------CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 444457899999997 55555544321 134578999999875554 546677
Q ss_pred EEEEeCCC
Q psy3640 434 AKLWDVRT 441 (616)
Q Consensus 434 i~iwd~~~ 441 (616)
+...++..
T Consensus 230 v~~i~l~~ 237 (266)
T 2iwa_A 230 LFEIKLHL 237 (266)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 87777654
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.79 E-value=8.1e-07 Score=81.58 Aligned_cols=190 Identities=8% Similarity=0.086 Sum_probs=133.0
Q ss_pred hhhheecccCCcc--eEEEEECCCCCEEEEEECCC--cEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEECCCc
Q psy3640 177 YEKFKMLKSHLLP--LTNITFDKFGTRCLTGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGCLTGSYDRT 251 (616)
Q Consensus 177 ~~~~~~l~~h~~~--i~~v~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~h~~~-I~~l~fs~~~~lls~s~d~~ 251 (616)
++.++.+ .|... ...+.|+ ++.+..+.+.+| .|+++|+++++.+.++...... -..+++..+.-+.+.-.++.
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCE
Confidence 4445555 45444 4789998 677777777766 8999999999999888654332 12345543322446667999
Q ss_pred EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCC
Q psy3640 252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQS 323 (616)
Q Consensus 252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~ 323 (616)
+.++|.++.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+.+.++.... ..+.+. ++.
T Consensus 109 v~v~D~~t~~~~~ti~~~~eG-~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNYDGEG-WGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEETTTCCEEEEEECSSCC-CCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECccCcEEEEEECCCCc-eEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 999999999999998743322 3444 345666666667889999999998887765321 234555 665
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecC------------CcCEEEEEEcCCCCEEEEEECC
Q psy3640 324 TFCSCSMDHTARIFNTNSGQEMHTLKAH------------TGPVISLQFSSDRNMLITGSFD 373 (616)
Q Consensus 324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~l~~~~~~~~l~~g~~d 373 (616)
..+....++.|.+.|.++++.+..+... ..-.+.|+|+|+++.|++.+..
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 5555556889999999999998887642 1345889999998888777743
No 261
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.76 E-value=1.4e-06 Score=80.04 Aligned_cols=189 Identities=11% Similarity=0.080 Sum_probs=131.2
Q ss_pred EEEEEeccCCc--EEEEEEcCCCCEE-EEECCC--cEEEEeCCCCceEEEeeCCCCc-EEEEEEeCCCCCEEEEEE-CCC
Q psy3640 221 EICTYRGHQNV--VYAVAFSEPYGCL-TGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGDKILTGS-FDK 293 (616)
Q Consensus 221 ~~~~~~~h~~~--I~~l~fs~~~~ll-s~s~d~--~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s-~dg 293 (616)
.+.++ .|... ...+.|+ ++.+. +.+.+| .|+++|+++++.+..+...... --.++.. ++.+.... .++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---g~~ly~ltw~~~ 107 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---KDKIVGLTWKNG 107 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEESSSS
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe---CCEEEEEEeeCC
Confidence 34455 45443 4788898 56644 666665 9999999999998888743322 2335544 45555554 488
Q ss_pred eEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEE
Q psy3640 294 TLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLI 368 (616)
Q Consensus 294 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~ 368 (616)
.+.++|..+.+.+.++........+.+++..|+....++.|.++|..+.+.+.++.... ..++.+.|. +|...+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 99999999999999988666556666788888877778889999999999888876422 334567776 665554
Q ss_pred EEECCCcEEEEecccccCCcccccccccccCCcceEEEec------------CccceeEEEEccCCCEEEEEeCC
Q psy3640 369 TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------------HSQEISNCLFNFSNSMIASSSLD 431 (616)
Q Consensus 369 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~d 431 (616)
..-.+..|.+.|.. +++.+..+.. ...-...++++|+++.|++.+..
T Consensus 187 n~w~~~~I~vIDp~----------------tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 187 NVWQTNKIVRIDPE----------------TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EETTSSEEEEECTT----------------TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEccCCeEEEEECC----------------CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 44457889999987 3333333322 12345789999998887777653
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.70 E-value=2.9e-06 Score=77.85 Aligned_cols=185 Identities=8% Similarity=0.061 Sum_probs=131.0
Q ss_pred hhheecccCCcc--eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcE--EEEEEcCCCCEEEEECCCcEE
Q psy3640 178 EKFKMLKSHLLP--LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV--YAVAFSEPYGCLTGSYDRTCK 253 (616)
Q Consensus 178 ~~~~~l~~h~~~--i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I--~~l~fs~~~~lls~s~d~~I~ 253 (616)
+.++.+ .|... ...+.|+. +.+.++.+.+|.|+++|+++++.+..+ -. ... ..+++..+.-+++.-.++.+.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEE
Confidence 334444 34433 46888874 566677788889999999999988877 22 232 335665443355667899999
Q ss_pred EEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCCEE
Q psy3640 254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQSTF 325 (616)
Q Consensus 254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~l 325 (616)
++|.++.+.+.++..... -+.+++ +++.|+.+..++.|.++|..+.+.+.++.-.. ..+.+. ++...
T Consensus 120 V~D~~Tl~~~~ti~~~~e-GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE-GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp EEETTTTEEEEEEECSSC-CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEECCcCcEEEEEeCCCc-eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 999999999999875332 245554 36777777778999999999999888775422 234444 66555
Q ss_pred EEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCCCCEEEEEE
Q psy3640 326 CSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSDRNMLITGS 371 (616)
Q Consensus 326 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~g~ 371 (616)
+....++.|.+.|.++++.+..+... ..-.+.|+++|+++.|++.+
T Consensus 195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 55556789999999999998877532 13568899999876666555
No 263
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.67 E-value=0.00076 Score=71.68 Aligned_cols=421 Identities=10% Similarity=-0.028 Sum_probs=232.1
Q ss_pred CcceEEEEECCCCCEEEEE-ECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-E-EEEECCCcEEEEeCCCCceE
Q psy3640 187 LLPLTNITFDKFGTRCLTG-SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C-LTGSYDRTCKLWDIKSGHEI 263 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-l-ls~s~d~~I~iwd~~~~~~~ 263 (616)
...+..++|++.+..|..+ ..++.|..+++........+...-.....+++.+.+. + ++-...+.|.+.+++.....
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~ 115 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ 115 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence 3467899999976666554 4578899999876554444443334567888876554 4 35566788999998765443
Q ss_pred EEeeCCCCcEEEEEEeCCCCCEEEEE-ECCCeEEEEeCCCcceeEEee--eceeeEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy3640 264 CTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSCS-MDHTARIFNT 339 (616)
Q Consensus 264 ~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~~-~dg~i~i~d~ 339 (616)
..+...-.....+++.|..+.++++- +..+.|...++.......... .....+++++++..|+.+. ..+.|..+|+
T Consensus 116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 33334456678999994455444443 225677777776554333332 2345679999877776665 4578999998
Q ss_pred CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc------------cccccC-------C
Q psy3640 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE------------STYRAS-------H 400 (616)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~-------~ 400 (616)
..... ..+........++++.. +..+++-...+.|...|............. ...... .
T Consensus 196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng 273 (628)
T 4a0p_A 196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNG 273 (628)
T ss_dssp TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGG
T ss_pred CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCC
Confidence 75443 33333344556788764 344444444677877775433211100000 000000 0
Q ss_pred cce-EEEecCccceeEEE-----EccC-------CCEEEEEeCCCcEEEEeCCCCeE-EEEeec-CCCCEEEEEEcCCCC
Q psy3640 401 KPI-HILTGHSQEISNCL-----FNFS-------NSMIASSSLDGTAKLWDVRTMCC-FYTLKN-HEDEVLDIAFDYSGS 465 (616)
Q Consensus 401 ~~~-~~~~~~~~~i~~~~-----~~~~-------~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~~ 465 (616)
.+. ..+....+...+.+ ..++ ..+++.+. ...|+-..+..... ...+.. .-..+..++|++...
T Consensus 274 ~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~ 352 (628)
T 4a0p_A 274 HCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDK 352 (628)
T ss_dssp GCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTT
T ss_pred CcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCC
Confidence 000 00000001111100 1111 12333333 23455554433211 111211 224578899998766
Q ss_pred EEEEEe-CCCcEEEEecCCceeeeeEEec---cCCCeeeEEEEEEcCCCCEEE-EEeCCCcEEEEecCCceEEeEEeecc
Q psy3640 466 KLATAS-SDQTANLWTVGGAVELLQTFYG---HSNEVSKVLDIAFDYSGSKLA-TASSDQTAKLWTVGGAVELLQTFYGH 540 (616)
Q Consensus 466 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~h 540 (616)
.|+.+. ..+.|+.++...... ...+.. ..........++++..++.|+ +-+..+.|.+.+++.. .........
T Consensus 353 ~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~-~~~~l~~~~ 430 (628)
T 4a0p_A 353 QLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR-SVGVVLKGE 430 (628)
T ss_dssp EEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-EEEEEEECT
T ss_pred eEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC-eEEEEEeCC
Confidence 666554 457788888765321 111111 001233567899999877655 5556788999998764 222223334
Q ss_pred ccCEEEEEEec-CCCEEEEEECCC--cEEEecCCcCeeeeEe-ccCcccEEEEEEeeCCCEEEEeeC-CCcEEEcccC
Q psy3640 541 SNEVSKVSFHP-TGKLVLSGSQDT--TCRLWSTESGECIQVL-KAHEDDVFSCGFNYNGDTIITASK-DNTCCIWRSM 613 (616)
Q Consensus 541 ~~~v~~l~~sp-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~ 613 (616)
......+++.| .|.+..+-.... .|...+++ |.....+ ...-...+.+++.++++.|..+.. .+.|...++.
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 56789999999 454444433222 46555554 4333333 323445688999998777766654 4677777664
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.67 E-value=1.8e-06 Score=79.24 Aligned_cols=188 Identities=8% Similarity=0.005 Sum_probs=129.3
Q ss_pred EEEEEeccCC--cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcE--EEEEEeCCCCCEEEEEECCCeEE
Q psy3640 221 EICTYRGHQN--VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV--YAVAFSEPYGDKILTGSFDKTLK 296 (616)
Q Consensus 221 ~~~~~~~h~~--~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V--~~l~~~~~~~~~l~s~s~dg~i~ 296 (616)
.+.++ .|.. -...+.|+.+.-+.+.+.+|.|+++|+++++.+..+ -. ... -.+++. .+...+..-.++.+.
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEE
T ss_pred EEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEE
Confidence 33444 4443 347888875322458888899999999999988777 22 233 335553 345555555689999
Q ss_pred EEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEEEEE
Q psy3640 297 LWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLITGS 371 (616)
Q Consensus 297 iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~~g~ 371 (616)
++|..+.+.+.++........+.+++..|+.+..++.|.++|..+.+.+.++.... ..++.+.|. +|...+..-
T Consensus 120 V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp EEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 99999999999988665555666788888888888999999999999888876422 245667777 665444444
Q ss_pred CCCcEEEEecccccCCcccccccccccCCcceEEEec-------------CccceeEEEEccCCCEEEEEeC
Q psy3640 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-------------HSQEISNCLFNFSNSMIASSSL 430 (616)
Q Consensus 372 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~ 430 (616)
.+..|.+.|.. +++.+..+.. ...-...++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~----------------TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPA----------------TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTT----------------TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCC----------------CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 57889999987 3333333321 1235678999998766665553
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.65 E-value=7.1e-05 Score=72.31 Aligned_cols=227 Identities=13% Similarity=0.084 Sum_probs=133.9
Q ss_pred eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCccc
Q psy3640 313 SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRNA 390 (616)
Q Consensus 313 ~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~ 390 (616)
...++++++++.+++-..++.|..||.... ....+. .......+++.++|+++++..... .|..+|..
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-------- 103 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-------- 103 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT--------
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC--------
Confidence 456789999887777667889999997753 333333 345678999999999666554433 35555543
Q ss_pred ccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-EEEee---------cCCCCEEEEE
Q psy3640 391 YAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC-FYTLK---------NHEDEVLDIA 459 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~l~ 459 (616)
......... ........++..+++..+++...++.|+.+|..++.. +.... ..-.....+
T Consensus 104 --------~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi- 174 (306)
T 2p4o_A 104 --------DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL- 174 (306)
T ss_dssp --------TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred --------CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence 211111111 1111223344444444455444588999999876531 21111 111234555
Q ss_pred EcCCCCEEEEE-eCCCcEEEEecCC-cee-eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEE
Q psy3640 460 FDYSGSKLATA-SSDQTANLWTVGG-AVE-LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQT 536 (616)
Q Consensus 460 ~~~~~~~l~~~-~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 536 (616)
++++..|+.+ ...+.|..|++.. +.. ....+... .....++++++|+++++....+.|.+++.......+..
T Consensus 175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~ 249 (306)
T 2p4o_A 175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ 249 (306)
T ss_dssp -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEee
Confidence 7788766555 4567899999864 211 11111111 12335799999998777777899999998643222222
Q ss_pred eeccccCEEEEEEe---cCCCEEEEEECCC
Q psy3640 537 FYGHSNEVSKVSFH---PTGKLVLSGSQDT 563 (616)
Q Consensus 537 ~~~h~~~v~~l~~s---pdg~~l~s~s~dg 563 (616)
........++++|. |+++.|..++..+
T Consensus 250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 250 AEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccccCCceEEEEecccCCCCEEEEECCCC
Confidence 32233568999998 8988777766543
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=6.5e-06 Score=74.94 Aligned_cols=189 Identities=10% Similarity=0.066 Sum_probs=129.5
Q ss_pred EEEEEeccCC--cEEEEEEcCCCCEE-EEECC--CcEEEEeCCCCceEEEeeCCCCc-EEEEEEeCCCCCEEEEEECCCe
Q psy3640 221 EICTYRGHQN--VVYAVAFSEPYGCL-TGSYD--RTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGDKILTGSFDKT 294 (616)
Q Consensus 221 ~~~~~~~h~~--~I~~l~fs~~~~ll-s~s~d--~~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~ 294 (616)
.+.++ +|.. -...+.|++ +.+. +.+.+ ..|+.+|+++++.+....-.... --.+++. .+......-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34455 5654 466899987 4544 66654 48999999999998887643322 2344544 2334444445889
Q ss_pred EEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEEE
Q psy3640 295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLIT 369 (616)
Q Consensus 295 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~~ 369 (616)
+.++|..+.+.+.++........+.+++..|+.+..++.|.++|..+.+.+.++.... ..++.+.+. +|...+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan 165 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN 165 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence 9999999999999988666666677788888888788999999999999888876432 345667765 5655544
Q ss_pred EECCCcEEEEecccccCCcccccccccccCCcceEEEe-------------cCccceeEEEEccCCCEEEEEeC
Q psy3640 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-------------GHSQEISNCLFNFSNSMIASSSL 430 (616)
Q Consensus 370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~ 430 (616)
.-.+..|.+.|..+ ++.+..+. ....-...++++|+++.|++.+.
T Consensus 166 vw~s~~I~vIDp~t----------------G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 166 VWLTSRIARIDPAS----------------GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ETTTTEEEEECTTT----------------CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ECCCCeEEEEECCC----------------CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 44577899999873 33333222 12235678999998877776664
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.64 E-value=1.5e-05 Score=72.49 Aligned_cols=187 Identities=7% Similarity=0.044 Sum_probs=129.1
Q ss_pred hheecccCCc--ceEEEEECCCCCEEEEEECCC--cEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEECCCcEE
Q psy3640 179 KFKMLKSHLL--PLTNITFDKFGTRCLTGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGCLTGSYDRTCK 253 (616)
Q Consensus 179 ~~~~l~~h~~--~i~~v~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~h~~~-I~~l~fs~~~~lls~s~d~~I~ 253 (616)
.++.+ .|.. -...+.|++ +.+..+.+.+| .|+++|+++++.+.+..-.... --.+++..+.-+.+.-.++.+.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 34444 4543 366899987 55556666654 8999999999999888644332 1334444322244666799999
Q ss_pred EEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCCEE
Q psy3640 254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQSTF 325 (616)
Q Consensus 254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~l 325 (616)
++|.++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+.+.++.... ..+.+. ++...
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEECCcCcEEEEEeCCCCc-eEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 9999999999998754332 45553 35666666678999999999998888775432 223333 55555
Q ss_pred EEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCCCCEEEEEEC
Q psy3640 326 CSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSDRNMLITGSF 372 (616)
Q Consensus 326 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~g~~ 372 (616)
+....+..|.+.|.++++.+..+... ..-.+.|+++|+++.|++.+.
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55556789999999999998887522 124688999998887777664
No 268
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.63 E-value=0.0018 Score=73.71 Aligned_cols=378 Identities=10% Similarity=0.086 Sum_probs=194.5
Q ss_pred cEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe-eCCCCcEEEEEEeCC-----C
Q psy3640 210 TCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEP-----Y 282 (616)
Q Consensus 210 ~i~iwd~~~~~~~~~~~~h-~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~-~~h~~~V~~l~~~~~-----~ 282 (616)
.|++.+......+..+... ...|.+.+.+. ..++.++ ++.+.++.+..++..... ..-...|.|+++.+. .
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~ 570 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL 570 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence 3566665555555555533 23566666543 3444444 678888888766422111 123568999998742 2
Q ss_pred CCEEEEEEC-CCeEEEEeCCCcceeEEeee----ceeeEEEc--CCCCEEEEEeCCCcEEEEEC--CCCceeEE--eecC
Q psy3640 283 GDKILTGSF-DKTLKLWASAKEECIQTYRG----HSAEVTFS--PDQSTFCSCSMDHTARIFNT--NSGQEMHT--LKAH 351 (616)
Q Consensus 283 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~----~~~~v~~~--~~~~~l~~~~~dg~i~i~d~--~~~~~~~~--~~~~ 351 (616)
++.++.|.+ |++++|+++.+.+.+....- ....+.+. ....+|.+|-.||.+.-+.+ .+|+.... ...-
T Consensus 571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG 650 (1158)
T 3ei3_A 571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG 650 (1158)
T ss_dssp CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC
T ss_pred ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC
Confidence 478999997 99999999987766544321 12223221 24467889999998766554 44544322 1111
Q ss_pred CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee-EEEEccC--CCEEEEE
Q psy3640 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS-NCLFNFS--NSMIASS 428 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~--~~~l~~~ 428 (616)
..++.=..+...+..-+.+..+....++.-+ .. .....-....+. ...|+.. ..-++..
T Consensus 651 ~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-----------------~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~ 712 (1158)
T 3ei3_A 651 TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-----------------HK-LVFSNVNLKEVNYMCPLNSDGYPDSLALA 712 (1158)
T ss_dssp SSCCEEEEEESSSCEEEEEESSSCEEEEESS-----------------SS-EEEEEBSSSCCCEEEEECCSSSTTEEEEE
T ss_pred CCceEEEEEeeCCceeEEEECCCCEEEEEcC-----------------Cc-eEEeccChHHhceEeccCcccCCCcEEEE
Confidence 3344433444334333333334444444321 11 111111111222 2333321 2234433
Q ss_pred eCCCcEEEEeCCCC--eEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------------------------
Q psy3640 429 SLDGTAKLWDVRTM--CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-------------------------------- 474 (616)
Q Consensus 429 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-------------------------------- 474 (616)
+ ++.+++..+... -.++.+. -...+..++++|..+.++.+..+.
T Consensus 713 ~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1158)
T 3ei3_A 713 N-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS 790 (1158)
T ss_dssp C-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred c-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence 3 445888766432 2233333 346788888888877665544221
Q ss_pred -----------------cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEe----------CCCcEEEEe
Q psy3640 475 -----------------TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATAS----------SDQTAKLWT 526 (616)
Q Consensus 475 -----------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~vwd 526 (616)
.+++.|..+.................+..+.|..+ ..++++|+ ..|.|.+|+
T Consensus 791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~ 870 (1158)
T 3ei3_A 791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQ 870 (1158)
T ss_dssp ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEE
T ss_pred ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEE
Confidence 13333333221111111111122223333344433 46888887 357899999
Q ss_pred cCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCc
Q psy3640 527 VGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606 (616)
Q Consensus 527 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~ 606 (616)
+.+..-....-....++|++++-- +| +|++|- ..++++|++...+.+..-..+-..|..+.....+++++.|..-..
T Consensus 871 v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S 947 (1158)
T 3ei3_A 871 YSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS 947 (1158)
T ss_dssp EETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC
T ss_pred EECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe
Confidence 864322222223456889988744 45 455443 368999999866544311111111223333345778888887777
Q ss_pred EEEccc
Q psy3640 607 CCIWRS 612 (616)
Q Consensus 607 i~vW~~ 612 (616)
|.+...
T Consensus 948 v~~~~y 953 (1158)
T 3ei3_A 948 VLLLAY 953 (1158)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 766543
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.60 E-value=7.7e-05 Score=73.43 Aligned_cols=243 Identities=6% Similarity=-0.131 Sum_probs=148.5
Q ss_pred CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEE
Q psy3640 187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEIC 264 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~ 264 (616)
.+..+|.+..+++ +|+.+. ...|+..++........+. ....+..++|.+... +. +-...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3455677777743 444433 3458888887665544444 344578999997655 44 55567899999998776544
Q ss_pred EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEe-CC-CcEEEEEC
Q psy3640 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCS-MD-HTARIFNT 339 (616)
Q Consensus 265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~-~d-g~i~i~d~ 339 (616)
.+.........+++.+..+.+.++-...+.|.+.++.......... .....+++.|.+..++... .. +.|..+++
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 4443344567888884455566666667899999987654333332 2345678999766665554 34 77888887
Q ss_pred CCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE
Q psy3640 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418 (616)
Q Consensus 340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 418 (616)
............-.....++++|++..|..+. ..+.|..+|+.. ................+++
T Consensus 190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG----------------~~~~~~~~~~~~~P~giav 253 (349)
T 3v64_C 190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------------SHRKAVISQGLPHPFAITV 253 (349)
T ss_dssp TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEECSSCSSEEEEEE
T ss_pred CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC----------------CceEEEEeCCCCCceEEEE
Confidence 64332222222334568999998777666655 456788888752 1112222222334456666
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q psy3640 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449 (616)
Q Consensus 419 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 449 (616)
..+.+.++-...+.|..+|..+++....+.
T Consensus 254 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 254 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred -ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 345555555566777777766665555444
No 270
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.59 E-value=0.0013 Score=69.89 Aligned_cols=376 Identities=9% Similarity=-0.014 Sum_probs=213.1
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEE
Q psy3640 200 TRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV 276 (616)
Q Consensus 200 ~~lasgs~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l 276 (616)
.+|+.+ ....|+..++++......+. ..-..+..++|.+.+. +. +-..++.|..+++........+.........+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 345444 34578999998765443332 2335688999998665 33 55678999999987665444444333456788
Q ss_pred EEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecC
Q psy3640 277 AFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAH 351 (616)
Q Consensus 277 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~ 351 (616)
++.+..+++.++-...+.|.+.++.......... .....+++.|....|+.... .+.|...++...... .+...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECC
Confidence 8884445555665667889999987654322221 23456789987666666553 467888887644433 33234
Q ss_pred CcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640 352 TGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL 430 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 430 (616)
-.....++++++++.|..+.. .+.|...|+.. ... ..+.........+++.. +.++++-..
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG----------------~~~-~v~~~~l~~P~glav~~-~~ly~tD~~ 226 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG----------------LNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS 226 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CSC-EEEEECCSCEEEEEEET-TEEEEEETT
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCC----------------Cce-EEeeccCCCceEEEEEC-CEEEEecCC
Confidence 456789999998777666654 57788888752 111 22222333344666654 444444445
Q ss_pred CCcEEEEeCCCCeEEEEeecCCCCEEE------------------------EEE----------cCCCC-----------
Q psy3640 431 DGTAKLWDVRTMCCFYTLKNHEDEVLD------------------------IAF----------DYSGS----------- 465 (616)
Q Consensus 431 dg~i~iwd~~~~~~~~~~~~~~~~v~~------------------------l~~----------~~~~~----------- 465 (616)
.+.|...|..+++....+......+.+ ++. .|.|-
T Consensus 227 ~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~ 306 (628)
T 4a0p_A 227 RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 306 (628)
T ss_dssp TTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred CCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence 678888887666443333221111111 111 11111
Q ss_pred ---EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeec--
Q psy3640 466 ---KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYG-- 539 (616)
Q Consensus 466 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~-- 539 (616)
+|+.+ ....|+-..+....... ..........+..+++++....|+.+.. .+.|..++....... ..+..
T Consensus 307 ~~~~Ll~s-~~~~i~~i~l~~~~~~~--~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~-~v~~~~~ 382 (628)
T 4a0p_A 307 PTTFLLFS-QKSAINRMVIDEQQSPD--IILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF-TVVVSSV 382 (628)
T ss_dssp CSSEEEEE-ETTEEEEECCCTTCCCC--EECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---
T ss_pred ccceeeee-ccceEEEEecccccCce--EEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCce-EEEEccc
Confidence 11111 11122222222110000 0001122344678899987777766654 677888887653211 11211
Q ss_pred ----cccCEEEEEEecCCCEEE-EEECCCcEEEecCCcCeeeeEe-ccCcccEEEEEEeeC-CCEEEE
Q psy3640 540 ----HSNEVSKVSFHPTGKLVL-SGSQDTTCRLWSTESGECIQVL-KAHEDDVFSCGFNYN-GDTIIT 600 (616)
Q Consensus 540 ----h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~-~~~l~t 600 (616)
....+..+++.+.++.|. +-+..+.|.+.++. |+....+ ........++++.|. |.+.+|
T Consensus 383 ~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~t 449 (628)
T 4a0p_A 383 PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFT 449 (628)
T ss_dssp -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence 234688999999876554 55567889999885 5544333 334456889999984 444444
No 271
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.53 E-value=0.00046 Score=66.78 Aligned_cols=237 Identities=10% Similarity=0.043 Sum_probs=143.1
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403 (616)
Q Consensus 325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 403 (616)
|+.+. ...|+..|+.+.+....+. ......+++|++.++.|+.. ...+.|..+++..... .....
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------------~~~~~ 69 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYD 69 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CE
T ss_pred EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------------CcccE
Confidence 33333 3568888988776555444 34567899999876655554 4468888888752100 01111
Q ss_pred EEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEe
Q psy3640 404 HILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD--QTANLWT 480 (616)
Q Consensus 404 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~iwd 480 (616)
............+++.+.+. +.++-...+.|.+++.........+.........++++|.+..|+.+... +.|..++
T Consensus 70 ~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 22222224457888886554 44555667889999987554333333344678999999977666655543 6788888
Q ss_pred cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE-EeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
+..... ..+.. ........+++++++..|+.+. ..+.|..+|+..... .+............+++. .+.++++
T Consensus 150 ~dG~~~--~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~ 224 (316)
T 1ijq_A 150 LNGVDI--YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWT 224 (316)
T ss_dssp TTSCCE--EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred CCCCCe--EEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEE
Confidence 765322 11211 1233456899999877776665 467899999875322 221111123446778875 3555555
Q ss_pred EECCCcEEEecCCcCeeeeEec
Q psy3640 559 GSQDTTCRLWSTESGECIQVLK 580 (616)
Q Consensus 559 ~s~dg~i~iwd~~~~~~~~~~~ 580 (616)
-...+.|..++..+|+.+..+.
T Consensus 225 d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 225 DIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ETTTTEEEEEETTTCCCCEEEE
T ss_pred ECCCCeEEEEeCCCCcceEEEe
Confidence 5567889999887777665553
No 272
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.51 E-value=0.00015 Score=72.54 Aligned_cols=242 Identities=6% Similarity=-0.106 Sum_probs=149.6
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEe
Q psy3640 189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTY 266 (616)
Q Consensus 189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~ 266 (616)
.-+|.+..+. .+|+.+. ...|+..++........+. ....+..++|.+.+. ++ +-...+.|..+++..+.....+
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 154 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 154 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence 3456666663 3444433 3568888887766554444 345578999997555 44 5556789999999877654444
Q ss_pred eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCC
Q psy3640 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNS 341 (616)
Q Consensus 267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~ 341 (616)
.........+++.+..+.++++-...+.|.+.++........+. .....+++.|.+..++.... . +.|..+++..
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 234 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 234 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence 43344556788884455555666667888888887554333332 23456789987776665543 3 6788888865
Q ss_pred CceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640 342 GQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420 (616)
Q Consensus 342 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 420 (616)
..........-.....|+++|++..|..+. ..+.|..+|+. .................+++ .
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d----------------G~~~~~~~~~~~~~P~giav-~ 297 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD----------------GSHRKAVISQGLPHPFAITV-F 297 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT----------------SCSCEEEECSSCSSEEEEEE-E
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC----------------CCeeEEEEECCCCCceEEEE-E
Confidence 433333333344568999998766666554 45678888875 21222222222334456666 4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeec
Q psy3640 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKN 450 (616)
Q Consensus 421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 450 (616)
.+.++++....+.|..+|..+++....+..
T Consensus 298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 298 EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 455566666677888888666665555543
No 273
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.48 E-value=3.2e-06 Score=91.28 Aligned_cols=264 Identities=9% Similarity=0.027 Sum_probs=150.9
Q ss_pred EEEECC-CCCEEEEEECCC-----------cEEEEECCCCcE--EEEEe-ccCCcEEEEEEcCCCCEE-EEE-CCCcEEE
Q psy3640 192 NITFDK-FGTRCLTGSYDR-----------TCKLWDIKSGHE--ICTYR-GHQNVVYAVAFSEPYGCL-TGS-YDRTCKL 254 (616)
Q Consensus 192 ~v~~s~-~g~~lasgs~dg-----------~i~iwd~~~~~~--~~~~~-~h~~~I~~l~fs~~~~ll-s~s-~d~~I~i 254 (616)
+.++.| +|+.++.|+.+. .+.+||..+++- +..+. .+.....++++..+++++ .|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556677 889999988643 588999988753 22332 233334457788888865 555 4568999
Q ss_pred EeCCCCceEEEeeCCCC-cEEEEEEeCCCCCEEEEEE-CC-----CeEEEEeCCCcceeEEee-------eceeeEEEcC
Q psy3640 255 WDIKSGHEICTYRGHQN-VVYAVAFSEPYGDKILTGS-FD-----KTLKLWASAKEECIQTYR-------GHSAEVTFSP 320 (616)
Q Consensus 255 wd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~~-------~~~~~v~~~~ 320 (616)
||..+++-...-..+.. .-.+++.. ++++.++.|+ .+ ..+.+||..+.+....-. .......+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99988754332221111 11233443 5789999988 34 568999998876443210 0000012234
Q ss_pred CCCEEEEEeCCC---------cEEEEECCCCceeEEeecCCc---------CEEEEEEcC-CCCEEEEEECCC-------
Q psy3640 321 DQSTFCSCSMDH---------TARIFNTNSGQEMHTLKAHTG---------PVISLQFSS-DRNMLITGSFDS------- 374 (616)
Q Consensus 321 ~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~~-~~~~l~~g~~dg------- 374 (616)
++..++.++.+| .+..||..+.........+.. .-.++.|.. ++++++.|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 555566665544 467888877654433322211 234444543 677788887532
Q ss_pred ----cEEEEecccccCCcccccccccccCCcceEEE--ecCccc-eeEEEEccCCCEEEEEeCC-----------CcEEE
Q psy3640 375 ----SIVVWDIQYQFGTRNAYAESTYRASHKPIHIL--TGHSQE-ISNCLFNFSNSMIASSSLD-----------GTAKL 436 (616)
Q Consensus 375 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i 436 (616)
.+.+||... ..-.... ...... -.+++..+++++++.|+.+ ..+.+
T Consensus 429 ~~~~~v~~yd~~~----------------~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ 492 (656)
T 1k3i_A 429 TNAHIITLGEPGT----------------SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI 492 (656)
T ss_dssp CCEEEEECCSTTS----------------CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred CcceEEEcCCCCC----------------CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence 466666542 1111111 111222 2344566799999999864 46899
Q ss_pred EeCCCCeEEEE--eecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640 437 WDVRTMCCFYT--LKNHEDEVLDIAFDYSGSKLATASS 472 (616)
Q Consensus 437 wd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~ 472 (616)
||..+.+-... ............+.|+++.++.|+.
T Consensus 493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 99887654321 1111122334556789999999885
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.48 E-value=0.00077 Score=67.56 Aligned_cols=249 Identities=10% Similarity=0.016 Sum_probs=151.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcc
Q psy3640 324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402 (616)
Q Consensus 324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 402 (616)
+++.+. ...|+..++.......... ....+..++|++.+..|.... ..+.|+.+++..... ....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~------------~~~~ 150 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSY 150 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CCC
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC------------CCcc
Confidence 344333 4678888887665444433 456788999998666665554 467888888752100 0122
Q ss_pred eEEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEE
Q psy3640 403 IHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS--DQTANLW 479 (616)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iw 479 (616)
.............+++.+. +.+.++-...+.|.+.++........+...-.....++++|.+..|+.+.. .+.|...
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 2233334455678888874 445555556788999998766544444444556899999997666666553 3678888
Q ss_pred ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeE-EeeccccCEEEEEEecCCCEEE
Q psy3640 480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQ-TFYGHSNEVSKVSFHPTGKLVL 557 (616)
Q Consensus 480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~ 557 (616)
++....... +.. ........+++++++..|+.+.. .+.|..+|+........ .....-.....+++. .+.++.
T Consensus 231 ~~dG~~~~~--~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lyw 305 (400)
T 3p5b_L 231 GLNGVDIYS--LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW 305 (400)
T ss_dssp ETTSCSCEE--EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEE
T ss_pred eCCCCccEE--EEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEE
Confidence 887642221 111 12234567999988887777654 67899999876422211 111123345577763 344555
Q ss_pred EEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640 558 SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591 (616)
Q Consensus 558 s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 591 (616)
+-...+.|..++..+|+.+..+........++..
T Consensus 306 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 306 TDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred ecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 6666788999998888877766544444555543
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=9.1e-05 Score=75.14 Aligned_cols=239 Identities=12% Similarity=0.089 Sum_probs=139.9
Q ss_pred eeeEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-C----cEEEEecccccC
Q psy3640 313 SAEVTFSP-DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-S----SIVVWDIQYQFG 386 (616)
Q Consensus 313 ~~~v~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g----~i~iwd~~~~~~ 386 (616)
...++++| ++..|+++...+.|+.+|+..+...... ........++|+++++.|+++... + .+...+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g--- 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES--- 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG---
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC---
Confidence 45678998 4666766666688999999876544433 345567899999999966666542 2 233333221
Q ss_pred CcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCC
Q psy3640 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSG 464 (616)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~ 464 (616)
.......+. .......++++| ++.++++-..++.|..++...+........ .......++++|++
T Consensus 215 ------------~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG 281 (430)
T 3tc9_A 215 ------------GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG 281 (430)
T ss_dssp ------------TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred ------------ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence 111111221 123456788999 677666666778999999987764322222 22457889999999
Q ss_pred CEEEEE-eCCCcEEEEecCCce-e--eeeEEeccC------------CCeeeEE-EEEEc--------CCCCEEEEEeCC
Q psy3640 465 SKLATA-SSDQTANLWTVGGAV-E--LLQTFYGHS------------NEVSKVL-DIAFD--------YSGSKLATASSD 519 (616)
Q Consensus 465 ~~l~~~-~~dg~i~iwd~~~~~-~--~~~~~~~~~------------~~~~~i~-~~~~s--------~~~~~l~~~~~d 519 (616)
++|+.+ ...+.|..++..... . ....+.+.. .....-. .++.. +++.++++-..+
T Consensus 282 ~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred CEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 955544 566788888775421 1 111121110 0011122 34553 446666666667
Q ss_pred CcEEEEecCCceEEeEEeecc------------------ccCEEEEEEecC-CCEEEEEECCCcEEEecCC
Q psy3640 520 QTAKLWTVGGAVELLQTFYGH------------------SNEVSKVSFHPT-GKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 520 g~i~vwd~~~~~~~~~~~~~h------------------~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~ 571 (616)
+.|+.++... ... .+.+. -.....++++|+ +.++++-..+..|+.++++
T Consensus 362 ~~I~~i~~~G--~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 362 HCIRILTPQG--RVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TEEEEECTTS--EEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred cEEEEECCCC--cEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8888888543 222 22211 124788999995 5555554456677776653
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.45 E-value=0.00076 Score=65.25 Aligned_cols=222 Identities=9% Similarity=-0.062 Sum_probs=136.4
Q ss_pred CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCC----CceEEEeeCCCCcEEEEEEeCCC
Q psy3640 209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEPY 282 (616)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~~ 282 (616)
..|+..|+.+.+....+. .-..+..++|.+++. +. +-..++.|..+++.. ......+.........+++.+..
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 468999998876655444 345678999998654 44 555678999999876 22222333333455788888444
Q ss_pred CCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEe-ecCCcCEE
Q psy3640 283 GDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMD--HTARIFNTNSGQEMHTL-KAHTGPVI 356 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~v~ 356 (616)
++..++-...+.|.+.+........... .....+++.|.+..++.+... +.|..+++.. .....+ ...-....
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~ 167 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPN 167 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCce
Confidence 5555665678899999987654333332 244567899977766655543 6788888764 333333 22344678
Q ss_pred EEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeCCCc
Q psy3640 357 SLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 357 ~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
.+++++++..|..+. ..+.|..+|+.. ........ ........+++. .+.++++....+.
T Consensus 168 gla~d~~~~~lY~~D~~~~~I~~~d~dg----------------~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 168 GITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeccCCEEEEEECCCCeEEEEecCC----------------CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 999998877766655 456898988752 11111111 112334566664 4555555556678
Q ss_pred EEEEeCCCCeEEEEee
Q psy3640 434 AKLWDVRTMCCFYTLK 449 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~ 449 (616)
|..+|..+++....+.
T Consensus 231 V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 231 IFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 8888877766555443
No 277
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.43 E-value=0.00013 Score=67.35 Aligned_cols=205 Identities=12% Similarity=0.124 Sum_probs=135.5
Q ss_pred EEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 405 ILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 405 ~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
.+.+-...+..++++|++..| ++...++.|...|.. ++.++.+.-. ......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 344566789999999976654 557778899999998 8777777532 3568889999988776766677889999876
Q ss_pred Ccee--eeeEEe---ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc--eEEeEEee-------ccccCEEEEE
Q psy3640 483 GAVE--LLQTFY---GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA--VELLQTFY-------GHSNEVSKVS 548 (616)
Q Consensus 483 ~~~~--~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~-------~h~~~v~~l~ 548 (616)
.... ...... ...........++++|.++.|+++.......+|.++.. ...+.... .+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5432 122221 11223344678999999988888877766666665410 00111111 1234678999
Q ss_pred EecCCC-EEEEEECCCcEEEecCCcCeeeeEeccCc---------ccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 549 FHPTGK-LVLSGSQDTTCRLWSTESGECIQVLKAHE---------DDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 549 ~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
++|... +++....+..+.++|.. |+.+..+.-.. ..--.++|.++|++.++ ++-+.+++++-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999754 55566667788899975 66665543221 24578999999985555 77776666543
No 278
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.41 E-value=0.0006 Score=67.00 Aligned_cols=231 Identities=6% Similarity=-0.096 Sum_probs=140.4
Q ss_pred EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee--
Q psy3640 233 YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-- 310 (616)
Q Consensus 233 ~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-- 310 (616)
+|.+..++ .++..+....|+..++........+. ....+..++|.+.++..+++-...+.|..+++..........
T Consensus 37 ~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 37 SCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp CEEESSSC-CEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccccC-ceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 34444442 34444455668888887665544444 344578999995555555555567889999988765443332
Q ss_pred -eceeeEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-C-CcEEEEecccccC
Q psy3640 311 -GHSAEVTFSPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-D-SSIVVWDIQYQFG 386 (616)
Q Consensus 311 -~~~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-d-g~i~iwd~~~~~~ 386 (616)
.....+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..+..... . +.|..+++..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG--- 191 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG--- 191 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---
Confidence 2335678888655554 4455678999998755433333334456789999996665555443 3 6777777641
Q ss_pred CcccccccccccCCcceEEE-ecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCC
Q psy3640 387 TRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464 (616)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~ 464 (616)
.....+ ...-.....+++++++..|..+. ..+.|..+|+........+.........+++. .+
T Consensus 192 --------------~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~ 256 (349)
T 3v64_C 192 --------------SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED 256 (349)
T ss_dssp --------------CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT
T ss_pred --------------CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC
Confidence 111111 12234467899998766665554 45789999986543333333334567778883 44
Q ss_pred CEEEEEeCCCcEEEEecCC
Q psy3640 465 SKLATASSDQTANLWTVGG 483 (616)
Q Consensus 465 ~~l~~~~~dg~i~iwd~~~ 483 (616)
..+++-...+.|..++..+
T Consensus 257 ~ly~td~~~~~V~~~~~~~ 275 (349)
T 3v64_C 257 SLYWTDWHTKSINSANKFT 275 (349)
T ss_dssp EEEEEETTTTEEEEEETTT
T ss_pred EEEEecCCCCeEEEEEccC
Confidence 5555555667777777433
No 279
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.40 E-value=9.5e-06 Score=87.62 Aligned_cols=272 Identities=8% Similarity=0.021 Sum_probs=148.5
Q ss_pred eEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCce--eEEeec-CCcCEEEEEEcCCCCEEEEEEC-CCcEEE
Q psy3640 315 EVTFSP-DQSTFCSCSMDH-----------TARIFNTNSGQE--MHTLKA-HTGPVISLQFSSDRNMLITGSF-DSSIVV 378 (616)
Q Consensus 315 ~v~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~--~~~~~~-~~~~v~~l~~~~~~~~l~~g~~-dg~i~i 378 (616)
..++.+ +++.++.|+.+. .+.+||..+++- +..+.. +.....++++..++.+++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456777 788888887543 578899987753 222221 2233345777889999999984 458999
Q ss_pred EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCeEEEEe----
Q psy3640 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LD-----GTAKLWDVRTMCCFYTL---- 448 (616)
Q Consensus 379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~---- 448 (616)
||..... ...+..+.. ...-.+++..+++++++.|+ .+ ..+.+||..+.+-...-
T Consensus 270 yd~~t~~--------------W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~ 334 (656)
T 1k3i_A 270 YDSSSDS--------------WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV 334 (656)
T ss_dssp EEGGGTE--------------EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred ecCcCCc--------------eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence 9986321 111111111 11123445567899999988 34 46999999887643320
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCC---------cEEEEecCCceeeeeEEeccCC------CeeeEEEEEEc-CCCCE
Q psy3640 449 KNHEDEVLDIAFDYSGSKLATASSDQ---------TANLWTVGGAVELLQTFYGHSN------EVSKVLDIAFD-YSGSK 512 (616)
Q Consensus 449 ~~~~~~v~~l~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~s-~~~~~ 512 (616)
......-....+..++..++.++.+| .+..||.....-.. ....... ....-.++.+. .+++.
T Consensus 335 ~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~~~~~i 413 (656)
T 1k3i_A 335 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413 (656)
T ss_dssp GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred cccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccCCCCeE
Confidence 00000000011223455555555444 45677776543211 1111100 00111233443 47778
Q ss_pred EEEEeCCC-----------cEEEEecCCceEEeEEe--eccccC-EEEEEEecCCCEEEEEECC-----------CcEEE
Q psy3640 513 LATASSDQ-----------TAKLWTVGGAVELLQTF--YGHSNE-VSKVSFHPTGKLVLSGSQD-----------TTCRL 567 (616)
Q Consensus 513 l~~~~~dg-----------~i~vwd~~~~~~~~~~~--~~h~~~-v~~l~~spdg~~l~s~s~d-----------g~i~i 567 (616)
+++|+.++ .+.+||..+..-. ... ..+... -.+++..|++++++.|+.+ ..+.+
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ 492 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI 492 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence 88887543 5778887653211 111 112222 2345667899999999854 46899
Q ss_pred ecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeC
Q psy3640 568 WSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASK 603 (616)
Q Consensus 568 wd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~ 603 (616)
||..+++-. ..+...........+.|+++.++.|+.
T Consensus 493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 998876532 222222222233446789999999985
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.39 E-value=0.00075 Score=62.30 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=132.4
Q ss_pred EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----eceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640 264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----GHSAEVTFSPDQSTFCSCSMDHTARIFNT 339 (616)
Q Consensus 264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~l~~~~~dg~i~i~d~ 339 (616)
+.+.+-...+..++|.|..+.++++...++.|...|.. ++.+..+. .....+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34556667899999994444455567778899999998 88777764 24566888888877677667788999987
Q ss_pred CCCce---eEEee------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE----
Q psy3640 340 NSGQE---MHTLK------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL---- 406 (616)
Q Consensus 340 ~~~~~---~~~~~------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---- 406 (616)
..... +.... ........++|+|.++.|+++.......+|.++.... ...+...
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-------------~~~l~i~~~~~ 165 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-------------SNELHISKDKA 165 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-------------SSCCEEEECHH
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-------------CCceeeecchh
Confidence 65442 22221 1234568999999998888887766667777651100 0011111
Q ss_pred ---ecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCC---------CCEEEEEEcCCCCEEEEEeCC
Q psy3640 407 ---TGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHE---------DEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 407 ---~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~~~~~d 473 (616)
..+...+.+++++|... +++....++.+..+|.. ++.+..+.-.. .....|+|+++|+..++ ++.
T Consensus 166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~ 243 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP 243 (255)
T ss_dssp HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence 11234578899998755 45555566778889965 44555554332 36789999999975554 666
Q ss_pred CcEEEEe
Q psy3640 474 QTANLWT 480 (616)
Q Consensus 474 g~i~iwd 480 (616)
+.++.+.
T Consensus 244 n~~y~f~ 250 (255)
T 3qqz_A 244 NRFYRFT 250 (255)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 6666554
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.38 E-value=0.0024 Score=63.96 Aligned_cols=241 Identities=8% Similarity=-0.070 Sum_probs=149.8
Q ss_pred CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCC----ceEEEeeCCCCcE
Q psy3640 200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSG----HEICTYRGHQNVV 273 (616)
Q Consensus 200 ~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~----~~~~~~~~h~~~V 273 (616)
.+|+.+.. ..|+..++........+ ..-..+..++|.+.+. +. +-...+.|+.+++... .....+.......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34444443 57888888876554443 3456788999998655 43 5556788999998762 2333444345678
Q ss_pred EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee---ceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe
Q psy3640 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG---HSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTL 348 (616)
Q Consensus 274 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~ 348 (616)
..+++.+..+++.++-...+.|.+.++........+.. ....+++.|.+..|+.... .+.|...++.........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 89999844566666666778999999876654444332 2456799997777766553 378888888754433333
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEec--CccceeEEEEccCCCEE
Q psy3640 349 KAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--HSQEISNCLFNFSNSMI 425 (616)
Q Consensus 349 ~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 425 (616)
...-.....|++++++..|..+.. .+.|..+|+.. ......... .......+++ ..+.++
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~l~~P~gl~v-~~~~ly 304 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAV-FEDKVF 304 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CCCEEEEECSSTTSSEEEEEE-ETTEEE
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC----------------CccEEEEeCCCCCCCCEEEEE-eCCEEE
Confidence 333356789999988777766654 56788888752 111112221 2233345555 344555
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640 426 ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459 (616)
Q Consensus 426 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 459 (616)
++....+.|..+|..+++.+..+........+++
T Consensus 305 wtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp EEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred EecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 5666667888888777776666654444444443
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.38 E-value=0.00087 Score=66.87 Aligned_cols=225 Identities=6% Similarity=-0.104 Sum_probs=140.8
Q ss_pred CEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEE
Q psy3640 242 GCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTF 318 (616)
Q Consensus 242 ~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~ 318 (616)
.++..+....|+..++.......... ....+..++|.+.++.++++-...+.|..++.........+. .....+++
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav 166 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV 166 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred ceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence 35555556788999988776554444 345678999995555555565667899999988765433332 23355788
Q ss_pred cCCCCEEE-EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-C-CcEEEEecccccCCcccccccc
Q psy3640 319 SPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-D-SSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 319 ~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~ 395 (616)
.+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.... . +.|..+++.
T Consensus 167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d------------- 233 (386)
T 3v65_B 167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD------------- 233 (386)
T ss_dssp ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------------
T ss_pred EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-------------
Confidence 88665554 4455678888888754433333333456789999987666665544 3 567777764
Q ss_pred cccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640 396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg 474 (616)
...........-.....+++++++..|..+. ..+.|..+|+........+.........+++. .+..+++....+
T Consensus 234 ---G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~ 309 (386)
T 3v65_B 234 ---GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTK 309 (386)
T ss_dssp ---SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred ---CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCC
Confidence 2222222223334567899998766665554 45789999986543333333334567788883 445556666677
Q ss_pred cEEEEecCCc
Q psy3640 475 TANLWTVGGA 484 (616)
Q Consensus 475 ~i~iwd~~~~ 484 (616)
.|..++..++
T Consensus 310 ~V~~~~~~~G 319 (386)
T 3v65_B 310 SINSANKFTG 319 (386)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 7888874443
No 283
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.34 E-value=0.0091 Score=67.91 Aligned_cols=398 Identities=11% Similarity=0.093 Sum_probs=210.7
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCC------C-EEEEEC-CCcEEEEeCC
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPY------G-CLTGSY-DRTCKLWDIK 258 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~------~-lls~s~-d~~I~iwd~~ 258 (616)
..|...+.+. .+++.++ ++.+.++++.+++..... ..-...|.|+++.+.. . ++.|.. |++|+|+++.
T Consensus 514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 3566666553 4566665 677888887765432211 2245689999998532 3 447775 9999999999
Q ss_pred CCceEEEeeC-CCCcEEEEEEeC-CCCCEEEEEECCCeEEEEeC--CCcceeEE---eeece-eeE-EEcCCCCEEEEEe
Q psy3640 259 SGHEICTYRG-HQNVVYAVAFSE-PYGDKILTGSFDKTLKLWAS--AKEECIQT---YRGHS-AEV-TFSPDQSTFCSCS 329 (616)
Q Consensus 259 ~~~~~~~~~~-h~~~V~~l~~~~-~~~~~l~s~s~dg~i~iwd~--~~~~~~~~---~~~~~-~~v-~~~~~~~~l~~~~ 329 (616)
+.+.+....- ......++.+.. ....+|..|-.||.+.-+.+ .+++.... +-|.. ..+ .+...+..-+.+.
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 8776654332 123444554431 23457888999998865544 44443321 11211 111 2333444444444
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEE-EEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVI-SLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (616)
.+....+|.-+ ++.... .....++. ...|+.. .+-++..+ ++.++|..+.... .-....+
T Consensus 671 s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~--------------~~~~~~i 733 (1158)
T 3ei3_A 671 SDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ--------------KLHIRTV 733 (1158)
T ss_dssp SSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS--------------SEEEEEE
T ss_pred CCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC--------------CeeEEEE
Confidence 45555555543 332222 11122332 3345432 23344333 5568888775221 0011111
Q ss_pred ecCccceeEEEEccCCCEEEEEeC-------------------------------------------------CCcEEEE
Q psy3640 407 TGHSQEISNCLFNFSNSMIASSSL-------------------------------------------------DGTAKLW 437 (616)
Q Consensus 407 ~~~~~~i~~~~~~~~~~~l~~~~~-------------------------------------------------dg~i~iw 437 (616)
.-...+..++++|..+.++.+.. -+.+++.
T Consensus 734 -pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~li 812 (1158)
T 3ei3_A 734 -PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLII 812 (1158)
T ss_dssp -ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEE
T ss_pred -eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEE
Confidence 11223344444444433322221 1347788
Q ss_pred eCCCCeEEEEeecCC-CCEEEEE---EcCC-CCEEEEEe----------CCCcEEEEecCCceeeeeEEeccCCCeeeEE
Q psy3640 438 DVRTMCCFYTLKNHE-DEVLDIA---FDYS-GSKLATAS----------SDQTANLWTVGGAVELLQTFYGHSNEVSKVL 502 (616)
Q Consensus 438 d~~~~~~~~~~~~~~-~~v~~l~---~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~ 502 (616)
|..+.+.+..+.-.. ..+.+++ |..+ ..++++|+ ..|.|.+|++.+............+ .+.
T Consensus 813 dp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g---~v~ 889 (1158)
T 3ei3_A 813 DQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG---AVY 889 (1158)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS---CEE
T ss_pred eCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC---cCE
Confidence 888777766655333 3355554 3222 46888876 3578999998643211111111222 344
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec--CCcCeeeeEec
Q psy3640 503 DIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS--TESGECIQVLK 580 (616)
Q Consensus 503 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd--~~~~~~~~~~~ 580 (616)
+++-- +| +|++| ..+.+++|++.....+..... +-..|..+.....+++++.|..-..|.++. ...++....-+
T Consensus 890 al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 890 SMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp EEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred EEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence 44322 34 44443 357899999976433321111 112233334444577999998877777754 44444433222
Q ss_pred -cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 581 -AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 581 -~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
.+...++++.|-.+ ..++.+..+|.+.+.+...
T Consensus 966 D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 24556889988755 4778899999999987654
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00034 Score=70.88 Aligned_cols=238 Identities=10% Similarity=0.079 Sum_probs=140.2
Q ss_pred eeeEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEeccccc
Q psy3640 313 SAEVTFSPD--QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS-----SIVVWDIQYQF 385 (616)
Q Consensus 313 ~~~v~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~ 385 (616)
...++++|+ ...|+.+...+.|+.+|..+++..... ........++++++|+ |+++...+ .+...+...
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~-- 216 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS-- 216 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG--
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC--
Confidence 456789984 555666655588999999877655443 3455679999999999 55544322 122222211
Q ss_pred CCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-ec-CCCCEEEEEEcC
Q psy3640 386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL-KN-HEDEVLDIAFDY 462 (616)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~v~~l~~~~ 462 (616)
.......+. .......+++++ ++.+.++-..++.|+.+|..++.....+ .. .......++++|
T Consensus 217 -------------~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp 282 (433)
T 4hw6_A 217 -------------GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP 282 (433)
T ss_dssp -------------TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT
T ss_pred -------------Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC
Confidence 111001111 223446678888 6666666667788999999877652222 21 122335799999
Q ss_pred CCCEEEEE-eCCCcEEEEecCCceee---eeEEecc------------CCCeeeEEEEEE---------cCCCCEEEEEe
Q psy3640 463 SGSKLATA-SSDQTANLWTVGGAVEL---LQTFYGH------------SNEVSKVLDIAF---------DYSGSKLATAS 517 (616)
Q Consensus 463 ~~~~l~~~-~~dg~i~iwd~~~~~~~---~~~~~~~------------~~~~~~i~~~~~---------s~~~~~l~~~~ 517 (616)
+++.|+.+ ...+.|..++....... ...+.+. ......-..+++ .+++.++++-.
T Consensus 283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~ 362 (433)
T 4hw6_A 283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR 362 (433)
T ss_dssp TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence 99955555 45678988886532110 1111111 011223456888 77777777777
Q ss_pred CCCcEEEEecCCceEEeEEeecc------------------ccCEEEEEEe-cCCCEEEEEECCCcEEEecCC
Q psy3640 518 SDQTAKLWTVGGAVELLQTFYGH------------------SNEVSKVSFH-PTGKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 518 ~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~l~~s-pdg~~l~s~s~dg~i~iwd~~ 571 (616)
.++.|+.++... .. ..+.+. -.....|+++ ++|.++++-..++.|+.++++
T Consensus 363 ~n~~I~~~~~~G--~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 363 DSHTVRVLTPEG--RV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTEEEEECTTS--EE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCEEEEECCCC--CE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 788999998643 22 222221 1236788888 556555555556677776653
No 285
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.32 E-value=0.0078 Score=66.04 Aligned_cols=387 Identities=10% Similarity=0.020 Sum_probs=214.2
Q ss_pred CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe----ccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCce
Q psy3640 187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE 262 (616)
Q Consensus 187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~ 262 (616)
...|+++.-+++|. |-.|+.+| +..||-.+ ...+. .....|.++....++.+..++.+| +..+|..+.+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f 94 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY 94 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE
Confidence 45799999999874 45566777 55676322 22221 123568898888888777777655 78999887654
Q ss_pred EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee-------eceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640 263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-------GHSAEVTFSPDQSTFCSCSMDHTAR 335 (616)
Q Consensus 263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~l~~~~~dg~i~ 335 (616)
..........|.++... ...+..++.+ .+..+|..+++...... .....+....++... .++.+| +.
T Consensus 95 ~~~~~~~~~~i~~i~~~---~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~ 168 (758)
T 3ott_A 95 EQPETDFPTDVRTMALQ---GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LC 168 (758)
T ss_dssp CCCSCCCCSCEEEEEEE---TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EE
T ss_pred ECcccCCCceEEEEEec---CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-Hh
Confidence 32111123457777543 3456666665 67888887665432201 111223444555544 455544 77
Q ss_pred EEECCCCceeEEeec-----CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640 336 IFNTNSGQEMHTLKA-----HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410 (616)
Q Consensus 336 i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (616)
.++..+++....... ....|.++...+++..|..|+. +-+..+|... ...........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~----------------~~~~~~~~l~~ 231 (758)
T 3ott_A 169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST----------------GQIKQTEAFHN 231 (758)
T ss_dssp EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT----------------TEEEEEEEEEE
T ss_pred hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC----------------CeEEeccCCCC
Confidence 888776654322111 1224888888877776666664 4577777642 11111111123
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-------NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
..|.++....++.+.+ |+.+ -+.+++..+........ -....|.++..+.+|.+ ..|+..| +.++....
T Consensus 232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~ 307 (758)
T 3ott_A 232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS 307 (758)
T ss_dssp EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC
T ss_pred CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC
Confidence 4577777776776555 4444 58888887654322211 12346899998887764 4455556 55544322
Q ss_pred ceeeeeEEe-ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-EEeEEee-------ccccCEEEEEEecCCC
Q psy3640 484 AVELLQTFY-GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV-ELLQTFY-------GHSNEVSKVSFHPTGK 554 (616)
Q Consensus 484 ~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-------~h~~~v~~l~~spdg~ 554 (616)
......... ........|.++..+.+|.+.+. +.+ .+..++..++. .....+. -....|.++.-.++|+
T Consensus 308 ~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 385 (758)
T 3ott_A 308 ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ 385 (758)
T ss_dssp -CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC
T ss_pred ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC
Confidence 111110000 01112245778888887776554 444 46666654311 1111111 0123588888877776
Q ss_pred EEEEEECCCcEEEecCCcCeeeeEe--cc----CcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 555 LVLSGSQDTTCRLWSTESGECIQVL--KA----HEDDVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 555 ~l~s~s~dg~i~iwd~~~~~~~~~~--~~----h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
+- .|+ ++-+..|+..+++..... .. ....|.++....+|. |..|+..+-+.+++
T Consensus 386 lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~ 445 (758)
T 3ott_A 386 LW-IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVD 445 (758)
T ss_dssp EE-EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred EE-EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEc
Confidence 44 445 456999998887654321 11 224588887666655 44466555566665
No 286
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=0.00016 Score=73.35 Aligned_cols=238 Identities=7% Similarity=-0.006 Sum_probs=137.1
Q ss_pred CEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC-
Q psy3640 354 PVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD- 431 (616)
Q Consensus 354 ~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 431 (616)
....++++| ++..|.++...+.|+.+|+. ...+..+.........++++++++.|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-----------------~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~ 200 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-----------------KEYVSTVYSGLSKVRTICWTHEADSMIITNDQN 200 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETT-----------------TTEEEEEECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECC-----------------CCEEEEEecCCCCcceEEEeCCCCEEEEEeCCC
Confidence 457889998 45566666655788888874 22233333345567889999999966666542
Q ss_pred C----cEEEEeCCCC-eEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEE
Q psy3640 432 G----TAKLWDVRTM-CCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA 505 (616)
Q Consensus 432 g----~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 505 (616)
+ .+..++.... .....+. .......++++| ++.++++-..++.|..++....... ....... ...-..++
T Consensus 201 ~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~--~~~P~gia 276 (430)
T 3tc9_A 201 NNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD--SGWEFHIQ 276 (430)
T ss_dssp CTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS--SSCCEEEE
T ss_pred CcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC--CCcceeEE
Confidence 2 2333443221 1112222 123456788999 6776666667789999998765331 1111111 12345789
Q ss_pred EcCCCCEEEEE-eCCCcEEEEecCCc-eEE--eEEeecc---------------ccCEE-EEEEe--------cCCCEEE
Q psy3640 506 FDYSGSKLATA-SSDQTAKLWTVGGA-VEL--LQTFYGH---------------SNEVS-KVSFH--------PTGKLVL 557 (616)
Q Consensus 506 ~s~~~~~l~~~-~~dg~i~vwd~~~~-~~~--~~~~~~h---------------~~~v~-~l~~s--------pdg~~l~ 557 (616)
++|++++|+.+ ...+.|..++.... ... ...+.+. -.... .++.. ++|.+.+
T Consensus 277 ~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyv 356 (430)
T 3tc9_A 277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF 356 (430)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEE
Confidence 99999955554 46788999887532 111 1111111 01123 45553 3455555
Q ss_pred EEECCCcEEEecCCcCeeeeEecc----C-------------cccEEEEEEeeC-CCEEEEeeCCCcEEEcccC
Q psy3640 558 SGSQDTTCRLWSTESGECIQVLKA----H-------------EDDVFSCGFNYN-GDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 558 s~s~dg~i~iwd~~~~~~~~~~~~----h-------------~~~V~~l~~s~~-~~~l~t~s~Dg~i~vW~~~ 613 (616)
+-...+.|+.++ .+|......-. . -.....++++|+ +.++++-...+.|+.++++
T Consensus 357 aD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 357 CDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 555667899888 45654332211 0 124788999995 5555555556778777653
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.28 E-value=0.0003 Score=71.30 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=137.7
Q ss_pred CEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC
Q psy3640 354 PVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD 431 (616)
Q Consensus 354 ~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 431 (616)
....++|+|+ ...|+.+...+.|+.+|.. . ..+..+.........++++++++ |+.+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~----------------~-g~v~~~~~~~~~P~giavd~dG~-lyVad~~ 201 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV----------------N-QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQ 201 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETT----------------T-TEEEEECCCCSCEEEEEECTTCC-EEEEECC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECC----------------C-CEEEEeecCCCCccEEEECCCCC-EEEEcCC
Confidence 3468999984 4455555444889999874 2 23333334455678999999999 4444432
Q ss_pred C-----cEEEEeCCCCeE-EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640 432 G-----TAKLWDVRTMCC-FYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504 (616)
Q Consensus 432 g-----~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 504 (616)
+ .+...+...+.. ...+. .......++++| ++.+.++-..++.|+.++..++............ ..-..+
T Consensus 202 ~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~--~~~~~i 278 (433)
T 4hw6_A 202 SSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK--GSNFHI 278 (433)
T ss_dssp SCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC--SSCEEE
T ss_pred CCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC--CCcccE
Confidence 1 233333222111 01111 234456788999 6666666667788999998744321122211111 112368
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEecCCc-eE--EeEEeecc---------------ccCEEEEEE---------ecCCCEE
Q psy3640 505 AFDYSGSKLATAS-SDQTAKLWTVGGA-VE--LLQTFYGH---------------SNEVSKVSF---------HPTGKLV 556 (616)
Q Consensus 505 ~~s~~~~~l~~~~-~dg~i~vwd~~~~-~~--~~~~~~~h---------------~~~v~~l~~---------spdg~~l 556 (616)
+++|++++|+.+. ..+.|..++.... .. ....+.+. -.....+++ .++|.+.
T Consensus 279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly 358 (433)
T 4hw6_A 279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY 358 (433)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence 9999999665554 5688999886521 11 01111111 123667899 6777777
Q ss_pred EEEECCCcEEEecCCcCeeeeEeccC------------------cccEEEEEEe-eCCCEEEEeeCCCcEEEcccC
Q psy3640 557 LSGSQDTTCRLWSTESGECIQVLKAH------------------EDDVFSCGFN-YNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 557 ~s~s~dg~i~iwd~~~~~~~~~~~~h------------------~~~V~~l~~s-~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
++-...+.|+.++. +|.... +.+. -.....++++ ++|.++++=...+.|+..+++
T Consensus 359 vaD~~n~~I~~~~~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 359 FCDRDSHTVRVLTP-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEETTTTEEEEECT-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECCCCEEEEECC-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 66667788999985 564432 2211 1236789999 566666665566788877654
No 288
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=5.1e-05 Score=83.13 Aligned_cols=188 Identities=11% Similarity=0.097 Sum_probs=110.4
Q ss_pred ceEEEEEC-CCCCEEEEEEC-CC----cEEEEECCCC-cEEE-EEeccCCcEEEEEEcCCCC-EEEEECC-----CcEEE
Q psy3640 189 PLTNITFD-KFGTRCLTGSY-DR----TCKLWDIKSG-HEIC-TYRGHQNVVYAVAFSEPYG-CLTGSYD-----RTCKL 254 (616)
Q Consensus 189 ~i~~v~~s-~~g~~lasgs~-dg----~i~iwd~~~~-~~~~-~~~~h~~~I~~l~fs~~~~-lls~s~d-----~~I~i 254 (616)
.+...+|| |||++||-+.. +| +|+++|+.++ +.+. .+.. ....++|+||++ ++....+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99999886543 33 4999999998 6321 1111 134688999997 4444433 36888
Q ss_pred EeCCCCce--EEEee-CCCCcEEEEEEeCCCCCEEEEEEC---CCeEEEEeCCCcc-ee--EEeeeceeeEEEcCC---C
Q psy3640 255 WDIKSGHE--ICTYR-GHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEE-CI--QTYRGHSAEVTFSPD---Q 322 (616)
Q Consensus 255 wd~~~~~~--~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~~~~~~v~~~~~---~ 322 (616)
+++.++.. ...+. ........+.|+ +++++|+..+. ...|.++|+.++. .. ..+........++++ +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 89987742 23333 233456788999 88988887663 3468888988762 22 333222222233333 6
Q ss_pred CEEEEEeCC-----CcEEEEECCCCceeEE-eecCCc--CEEEEEEcCCCCEEEEEECCCcEEEEec
Q psy3640 323 STFCSCSMD-----HTARIFNTNSGQEMHT-LKAHTG--PVISLQFSSDRNMLITGSFDSSIVVWDI 381 (616)
Q Consensus 323 ~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~l~~g~~dg~i~iwd~ 381 (616)
..|+..+.. ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++..++|-+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 665554433 2577778765322222 222333 34555554 3345566667776555543
No 289
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.26 E-value=0.0024 Score=62.10 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=142.8
Q ss_pred CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-------eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-------RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG 342 (616)
Q Consensus 270 ~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~ 342 (616)
...+.++.|. +.+..++ ++.+|.|. ...+.++.-... ..+...+.+.+ +. +++++..|.|.. ....|
T Consensus 35 ~~~~~~v~~~-~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFI-DRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEES-SSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEEC-CCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 4578899987 4455666 55667653 333333322211 12334567765 33 444455664433 33334
Q ss_pred ceeEEee---cCCcCEEEEEEcCCCCEEEEEECCCcEEE-EecccccCCcccccccccccCCcce-EEEecCccceeEEE
Q psy3640 343 QEMHTLK---AHTGPVISLQFSSDRNMLITGSFDSSIVV-WDIQYQFGTRNAYAESTYRASHKPI-HILTGHSQEISNCL 417 (616)
Q Consensus 343 ~~~~~~~---~~~~~v~~l~~~~~~~~l~~g~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~ 417 (616)
+.-.... .+...+..+.+.+++..++++ .+|.|.. .|- ...- .........+..+.
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------------G~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------------GKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------------TSSEEEEECSCCCCEEEEE
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------------CCCCEEeecCCCcceEEEE
Confidence 4333332 233557788877666655554 4565432 221 1111 11223345678888
Q ss_pred EccCCCEEEEEeCCCcEEEEeC--CCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc-
Q psy3640 418 FNFSNSMIASSSLDGTAKLWDV--RTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH- 494 (616)
Q Consensus 418 ~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 494 (616)
+.+++.+++++...+..+-.|- .+.+.+. ......+..+++.+++..+ .++.+|.+.+.+...+ .........
T Consensus 170 ~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~~~~ 245 (327)
T 2xbg_A 170 RSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS-ENWGELLSPL 245 (327)
T ss_dssp ECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE-EEECCCBCTT
T ss_pred EcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC-CeeEeccCCc
Confidence 9998888776654443444443 3344432 2345678999999988665 4556787776642222 222211111
Q ss_pred CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570 (616)
Q Consensus 495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~ 570 (616)
......+..+.+.+++..++++. ++.+ .+..+.+ ....... .+...+.++.|.+++. +++++.+|.|.-++-
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 11113477888988877776654 5655 3333332 2222222 2345678898876654 666667887776653
No 290
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.23 E-value=0.012 Score=64.51 Aligned_cols=401 Identities=9% Similarity=-0.007 Sum_probs=217.3
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR 267 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~ 267 (616)
..|.++...++| .|-.|+.+| +..||..+.+...........|.++.. .++.+..++.+ .+..+|..+++......
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~ 138 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDT 138 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEecc
Confidence 468888888776 566666665 789998776432211112335777754 46666677766 68889988766433211
Q ss_pred ----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-ee-------ceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640 268 ----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RG-------HSAEVTFSPDQSTFCSCSMDHTAR 335 (616)
Q Consensus 268 ----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-------~~~~v~~~~~~~~l~~~~~dg~i~ 335 (616)
.....|.++... .++...+ ++.. -+..++..+++..... .. ....+...+++..|..|+. +-+.
T Consensus 139 ~~~~l~~~~i~~i~~d-~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRT-KDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp HHHCCSCSCEEEEEEC-TTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred CCCCcCCCeEEEEEEc-CCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 123568888776 5555554 5554 5777887766533211 11 1223445556666666664 4588
Q ss_pred EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640 336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415 (616)
Q Consensus 336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 415 (616)
.+|..+++...........|.++...++|.+. .|+. +-+.+++.....-. ..... ...+ ..-....|.+
T Consensus 215 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~--~~~~~----~~~~---~~l~~~~i~~ 283 (758)
T 3ott_A 215 QYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQ--HIIHD----SRNI---QSLTNNIIWN 283 (758)
T ss_dssp EEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCE--EECCC----TTCT---TSCSCSCEEE
T ss_pred EEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEE--EEEcC----CCCc---CcCCcCeEEE
Confidence 88987765432222234468888888777644 4554 45777776421100 00000 0000 0012345777
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeee
Q psy3640 416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-----NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQ 489 (616)
Q Consensus 416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~ 489 (616)
+....++.+- .|+..| +.++.....-...... .....|.++..+.+|.+.+ |+.+| +..++..+.. ....
T Consensus 284 i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~ 359 (758)
T 3ott_A 284 IFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAI 359 (758)
T ss_dssp EEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCE
T ss_pred EEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeE
Confidence 7777666544 455556 5544432211111111 1234688998888876554 44554 6666654321 1111
Q ss_pred EEec----cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeec-----cccCEEEEEEecCCCEEEEEE
Q psy3640 490 TFYG----HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG-----HSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 490 ~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----h~~~v~~l~~spdg~~l~s~s 560 (616)
.+.. .......|.++.-+.+|.+.+ |+ ++.+..|+..+..-....... ....|.++...++|+ |-.|+
T Consensus 360 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT 436 (758)
T 3ott_A 360 WYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWIST 436 (758)
T ss_dssp EECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEE
T ss_pred EeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEE
Confidence 1111 111224577888888877554 44 457899998764221111111 124578888777765 55566
Q ss_pred CCCcEEEecCCcC-----eee---eEec---c-CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640 561 QDTTCRLWSTESG-----ECI---QVLK---A-HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614 (616)
Q Consensus 561 ~dg~i~iwd~~~~-----~~~---~~~~---~-h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~ 614 (616)
..+-+.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-+..++..+
T Consensus 437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~ 502 (758)
T 3ott_A 437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT 502 (758)
T ss_dssp SSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred CCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence 6666888886531 111 1111 1 123588888888888776333344466777654
No 291
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.22 E-value=0.0039 Score=58.60 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=163.6
Q ss_pred CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372 (616)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~ 372 (616)
..|.|.|+.++....+..-.....-.+|..+.+|.-. ...+.+||+++.+.++...- ..+|.--.|-.+ +.|+..+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT- 124 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT- 124 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEE-
T ss_pred CEEEEEECCCCCCccccccccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEc-
Confidence 3788889998877665555556667899999888876 78899999999999988875 457777788755 4455444
Q ss_pred CCcEEEEecccccCCcccccccccccCCcceEEEecCc----cceeEEEEccCCCEEEEEeC-------CCcEEEEeCCC
Q psy3640 373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS----QEISNCLFNFSNSMIASSSL-------DGTAKLWDVRT 441 (616)
Q Consensus 373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~ 441 (616)
+..|+-|++.. ...|...+..|. ..|..-..+++.++++..+- .|.+.+|..+.
T Consensus 125 ~taVyHWs~~~---------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 125 DNAVYHWSMEG---------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp SSEEEEEESST---------------TCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCcEEEEcccC---------------CCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 56899999863 234555554442 34555566777776654432 36789999876
Q ss_pred CeEEEEeecCCCCEEEEEEcCC---CCEEEEEeC---CCcEEEEecCCc--------eeeeeEEeccCCCeeeEEEEEEc
Q psy3640 442 MCCFYTLKNHEDEVLDIAFDYS---GSKLATASS---DQTANLWTVGGA--------VELLQTFYGHSNEVSKVLDIAFD 507 (616)
Q Consensus 442 ~~~~~~~~~~~~~v~~l~~~~~---~~~l~~~~~---dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~i~~~~~s 507 (616)
+. -+.+++|...-..+.+..+ .+.++.+.. .+.+++-++... .+....+........--.++..+
T Consensus 190 ~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs 268 (365)
T 2xzh_A 190 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 268 (365)
T ss_dssp TE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEE
T ss_pred cc-cceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEec
Confidence 63 4556666554433332211 112333322 258888888543 11222223332223334578888
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640 508 YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574 (616)
Q Consensus 508 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 574 (616)
+.-..+..-+.-|.+++||++++.... .-+-...+|-..+-+....=++.....|.|.--.++...
T Consensus 269 ~kygviyviTK~G~ihlyDleTgt~i~-~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 269 EKHDVVFLITKYGYIHLYDLETGTCIY-MNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCEEEEEeCCcEEEEEEcccCcEEE-EeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 888999999999999999999964433 333344455444444443344444566666555554443
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.20 E-value=0.0012 Score=63.89 Aligned_cols=225 Identities=8% Similarity=-0.040 Sum_probs=135.3
Q ss_pred CCcEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCce-EEEeeCCCCcEEEEEEeCCCC
Q psy3640 208 DRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYG 283 (616)
Q Consensus 208 dg~i~iwd~~~~~-~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~ 283 (616)
...|+..++.... ....+...-..+.+++|.+.+. +. +-...+.|..+++..+.. ...+...-.....+++.+..+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 3578899987763 1112222224567899998544 43 556778999999877642 122222334566788884455
Q ss_pred CEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecCCcCEEEE
Q psy3640 284 DKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAHTGPVISL 358 (616)
Q Consensus 284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l 358 (616)
..+++-...+.|.++++.......... .....+++.|.+..++.... .+.|...++............-.....+
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 666666667899999987654332221 23456789987777666653 5788888876433222222233456899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy3640 359 QFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437 (616)
Q Consensus 359 ~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw 437 (616)
++++++..|..+. ..+.|..+|+.. ................+++. .+.++.+-...+.|..+
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDG----------------TNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILAC 234 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCC----------------CceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEE
Confidence 9999777666654 467888888752 11111222223344556664 34455555566788888
Q ss_pred eCCCCeEEEEee
Q psy3640 438 DVRTMCCFYTLK 449 (616)
Q Consensus 438 d~~~~~~~~~~~ 449 (616)
+..+++....+.
T Consensus 235 ~~~~G~~~~~i~ 246 (318)
T 3sov_A 235 NKYTGEGLREIH 246 (318)
T ss_dssp ETTTCCSCEEEE
T ss_pred ECCCCCceEEEe
Confidence 887776555544
No 293
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.18 E-value=0.0018 Score=62.59 Aligned_cols=225 Identities=9% Similarity=-0.026 Sum_probs=136.6
Q ss_pred EEEEECCCcEEEEeCCCCc-eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-Eee---eceeeEE
Q psy3640 243 CLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYR---GHSAEVT 317 (616)
Q Consensus 243 lls~s~d~~I~iwd~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~---~~~~~v~ 317 (616)
+|.-+....|+..++.... ....+........+++|.+.++..+.+-...+.|..++...+.... .+. .....++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 4444556788999988764 1111211223567899985455666666667889999987764221 111 2345678
Q ss_pred EcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCccccccc
Q psy3640 318 FSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAES 394 (616)
Q Consensus 318 ~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~ 394 (616)
+.+.+..| ++-...+.|.++++..................++++|.+..++.... .+.|...++.
T Consensus 86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d------------ 153 (318)
T 3sov_A 86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD------------ 153 (318)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT------------
T ss_pred EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC------------
Confidence 88755555 44456688999998754433333334456789999987666666553 4677777764
Q ss_pred ccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640 395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD 473 (616)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d 473 (616)
...........-.....+++++++..|..+. ..+.|..+|+..................+++.. +..+++-...
T Consensus 154 ----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~ 228 (318)
T 3sov_A 154 ----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWST 228 (318)
T ss_dssp ----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred ----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCC
Confidence 1111112222234457899998766665554 457899999864332222233345667788763 3455555566
Q ss_pred CcEEEEecCCc
Q psy3640 474 QTANLWTVGGA 484 (616)
Q Consensus 474 g~i~iwd~~~~ 484 (616)
+.|..++..++
T Consensus 229 ~~V~~~~~~~G 239 (318)
T 3sov_A 229 HSILACNKYTG 239 (318)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 78888887554
No 294
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.13 E-value=0.0076 Score=58.47 Aligned_cols=270 Identities=12% Similarity=0.060 Sum_probs=142.3
Q ss_pred CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc
Q psy3640 229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE 304 (616)
Q Consensus 229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 304 (616)
...+.++.|.+++..++++.++.| +...+.|+.-.... .....+.++.|. + +. ++.++.++.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEE-T-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEec-C-Ce-EEEEECCCeEEE-ECCCCC
Confidence 457899999888876667777765 33344443222221 124578999997 4 34 444555665544 223233
Q ss_pred eeEEee------eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy3640 305 CIQTYR------GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPVISLQFSSDRNMLITGSFDSSIV 377 (616)
Q Consensus 305 ~~~~~~------~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~g~~dg~i~ 377 (616)
.-.... +....+.+.+++..++++ .+|.|.. ....|+.-... ......+..+++.+++.+++++. +|.+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEE
Confidence 222211 222345555555555544 4554432 22234332222 34456789999999888777664 45443
Q ss_pred E-EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec----CC
Q psy3640 378 V-WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN----HE 452 (616)
Q Consensus 378 i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~ 452 (616)
. +|-... ....+ .......+..+.+.+++..++ ++.+|.+++.+...++.-..+.. ..
T Consensus 187 ~S~d~gG~--------------tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~ 249 (327)
T 2xbg_A 187 STWEPGQT--------------AWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNS 249 (327)
T ss_dssp EEECTTCS--------------SCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCC
T ss_pred EEeCCCCC--------------ceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCC
Confidence 3 332000 11221 123445677888888887654 45577777764332333222221 12
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 527 (616)
..+.++++.+++..++++ .+|.+ ++..+.+ ...............+..+.+.+++ .+++++.+|.|.-++-
T Consensus 250 ~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-STTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred cceEEEEecCCCEEEEEe-CCCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 358899999877766655 46666 3333332 2222222111111234566776444 4666677887766553
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.11 E-value=0.0015 Score=66.43 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=141.7
Q ss_pred eeeEEEcCC-CCEEEEEe-CCCcEEEEECCCCceeEEeecC---CcCEEEEEE-------cCCCCEEEEEECCC-c----
Q psy3640 313 SAEVTFSPD-QSTFCSCS-MDHTARIFNTNSGQEMHTLKAH---TGPVISLQF-------SSDRNMLITGSFDS-S---- 375 (616)
Q Consensus 313 ~~~v~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~-------~~~~~~l~~g~~dg-~---- 375 (616)
...++++|. ...|+++. ..+.|++.|+.++......... ......++| +++++.|+++...+ .
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 456789983 55455444 4467999998877665544322 235789999 99999777776654 2
Q ss_pred --EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCC-------CCeE-
Q psy3640 376 --IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVR-------TMCC- 444 (616)
Q Consensus 376 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~- 444 (616)
|.+++...... .. .......+.. -.....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~---------~~-~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~ 289 (496)
T 3kya_A 221 PSVYIIKRNADGT---------FD-DRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289 (496)
T ss_dssp EEEEEEECCTTSC---------CS-TTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred ceEEEEecCCCCc---------ee-ecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence 45554321000 00 0000011111 123456788885 5555566677889999987 4543
Q ss_pred ----------EEE-ee-cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCceeee---eEEecc---C---------C
Q psy3640 445 ----------FYT-LK-NHEDEVLDIAFDYSGSKLATA-SSDQTANLWTVGGAVELL---QTFYGH---S---------N 496 (616)
Q Consensus 445 ----------~~~-~~-~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~---~~~~~~---~---------~ 496 (616)
... +. ........++|+|+|+.|..+ +....|+.++.......+ ..+.+. . .
T Consensus 290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a 369 (496)
T 3kya_A 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEA 369 (496)
T ss_dssp CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGC
T ss_pred cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccc
Confidence 111 21 223456899999999965544 566788886654321111 122221 0 0
Q ss_pred CeeeEE-EEEEc-------CCCCEEEEEeCCCcEEEEecCCceEEeEEeecc------------------------ccCE
Q psy3640 497 EVSKVL-DIAFD-------YSGSKLATASSDQTAKLWTVGGAVELLQTFYGH------------------------SNEV 544 (616)
Q Consensus 497 ~~~~i~-~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------------~~~v 544 (616)
....-. .++.. +++.++++-..++.|+.++.... +.++.+. -...
T Consensus 370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~---v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P 446 (496)
T 3kya_A 370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI---VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV 446 (496)
T ss_dssp BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB---EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC---EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence 111223 34554 45667777677889999985442 2223221 1236
Q ss_pred EEEEEecC-CCEEEEEECCCcEEEecCCcCeeee
Q psy3640 545 SKVSFHPT-GKLVLSGSQDTTCRLWSTESGECIQ 577 (616)
Q Consensus 545 ~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~ 577 (616)
..|+++++ |.+.++=..+..|+.++++....+.
T Consensus 447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred cEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 78899987 6655555567788888887655544
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.04 E-value=0.0026 Score=61.06 Aligned_cols=197 Identities=11% Similarity=0.177 Sum_probs=123.1
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCC----CC---EEEEEEC---CCcEEEEecccccCCccc
Q psy3640 321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD----RN---MLITGSF---DSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 321 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~----~~---~l~~g~~---dg~i~iwd~~~~~~~~~~ 390 (616)
....++.....+-+.+||+ +|+.++.+.. +.+..+..-|+ |+ ++++... +++|.+|++....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~----- 110 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN----- 110 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----
Confidence 4456666667788999999 7888888753 56677766652 22 2333333 5789999874211
Q ss_pred ccccccccCCcceEEEe-------cCccceeEEEE--ccC-CC-EEEEEeCCCcEEEEeC-------CCCeEEEEeecCC
Q psy3640 391 YAESTYRASHKPIHILT-------GHSQEISNCLF--NFS-NS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~-------~~~~~~~~~~~~~ 452 (616)
.++.... .....+..+++ ++. +. ++++...+|.+..|++ .+.+.++++.. .
T Consensus 111 ----------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-g 179 (355)
T 3amr_A 111 ----------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-N 179 (355)
T ss_dssp ----------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred ----------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-C
Confidence 1122221 11145556666 664 43 6888888899999988 23466677763 4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce----eeeeEEeccCCCeeeEEEEEE--cCCCC-EEEEEe-CCCcEEE
Q psy3640 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAV----ELLQTFYGHSNEVSKVLDIAF--DYSGS-KLATAS-SDQTAKL 524 (616)
Q Consensus 453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~v 524 (616)
+.+..+..++....|+.+-++..|..++..... ..+... ........+..+++ .++++ +|++.+ .++...+
T Consensus 180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V 258 (355)
T 3amr_A 180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI 258 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence 678899999998999999998766666644221 222222 22222224666666 56666 666666 5779999
Q ss_pred EecCCceEEeEEe
Q psy3640 525 WTVGGAVELLQTF 537 (616)
Q Consensus 525 wd~~~~~~~~~~~ 537 (616)
||.+...+.+..+
T Consensus 259 ydr~~~~~~vg~f 271 (355)
T 3amr_A 259 YDRQGKNKYVADF 271 (355)
T ss_dssp EESSTTCCEEEEE
T ss_pred EECCCCCcEEEEE
Confidence 9997434455444
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.03 E-value=0.013 Score=57.41 Aligned_cols=261 Identities=10% Similarity=0.121 Sum_probs=165.0
Q ss_pred CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372 (616)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~ 372 (616)
..|.|.|+.++..+..-.-.....-.+|..+.+|.-. ...+.+||+++.+.++...-. .+|.--.|-.+ +.|+..+
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT- 123 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT- 123 (494)
T ss_dssp CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-
T ss_pred CeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-
Confidence 4788889998877766555666667899999888776 788999999999999888754 45666677644 3454444
Q ss_pred CCcEEEEecccccCCcccccccccccCCcceEEEecCc----cceeEEEEccCCCEEEEEe-------CCCcEEEEeCCC
Q psy3640 373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS----QEISNCLFNFSNSMIASSS-------LDGTAKLWDVRT 441 (616)
Q Consensus 373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~ 441 (616)
+..|+-|++.. ...|...+..|. ..|..-..+++.++++..+ -.|.+.+|..+.
T Consensus 124 ~taVyHWsi~~---------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 188 (494)
T 1bpo_A 124 DNAVYHWSMEG---------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (494)
T ss_dssp SSEEEEEESSS---------------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred CCeeEEecccC---------------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence 66899999863 234555554443 4455566677777766443 246788999876
Q ss_pred CeEEEEeecCCCCEEEEEEcCCC---CEEEEEeCC---CcEEEEecCCc--------eeeeeEEeccCCCeeeEEEEEEc
Q psy3640 442 MCCFYTLKNHEDEVLDIAFDYSG---SKLATASSD---QTANLWTVGGA--------VELLQTFYGHSNEVSKVLDIAFD 507 (616)
Q Consensus 442 ~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~d---g~i~iwd~~~~--------~~~~~~~~~~~~~~~~i~~~~~s 507 (616)
+. -+.+++|...-..+....+. ..++.+... +.+++-++... .+....+........--.++..+
T Consensus 189 ~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs 267 (494)
T 1bpo_A 189 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (494)
T ss_dssp CC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred cc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence 53 45566666554444433211 233334332 78889888543 11222222232222334578889
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640 508 YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574 (616)
Q Consensus 508 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~ 574 (616)
+....+...+.-|.+++||+.++..... -+-...+|-..+-+....=++.....|.|.--.++...
T Consensus 268 ~kygviyviTK~G~i~lyDleTgt~i~~-nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 268 EKHDVVFLITKYGYIHLYDLETGTCIYM-NRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCEEEEEecCceEEEEecccceeeee-ecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 9999999999999999999999644433 33344555544444444445555566665555544433
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.02 E-value=0.00012 Score=80.25 Aligned_cols=193 Identities=10% Similarity=0.035 Sum_probs=109.6
Q ss_pred ceeEEEEc-cCCCEEEEEeC-CC----cEEEEeCCCC-eEEEE-eecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q psy3640 412 EISNCLFN-FSNSMIASSSL-DG----TAKLWDVRTM-CCFYT-LKNHEDEVLDIAFDYSGSKLATASSD-----QTANL 478 (616)
Q Consensus 412 ~i~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~i 478 (616)
.+....|+ |+|+.++.+.. +| .|+++|+.++ +.+.. +. ....+++|+|||+.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 45678899 99998876544 23 4999999988 63211 11 113467899999988877655 25777
Q ss_pred EecCCceee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEecCCceEEe--EEe-eccccCEEEEEEec
Q psy3640 479 WTVGGAVEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASS---DQTAKLWTVGGAVELL--QTF-YGHSNEVSKVSFHP 551 (616)
Q Consensus 479 wd~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~l~~sp 551 (616)
+++.+.... ...+..... .....+.|+|||++|+.... ...|.++|+.++.... ..+ ........++.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~ 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNP--LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCT--TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred EECCCCchhcEEEEecCCC--ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence 787664322 112211111 12457899999999887663 3468888887642111 222 23344455555544
Q ss_pred CCCEEE-EEECC----CcEEEecCCcCeeeeE-eccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640 552 TGKLVL-SGSQD----TTCRLWSTESGECIQV-LKAHED--DVFSCGFNYNGDTIITASKDNTCCIWR 611 (616)
Q Consensus 552 dg~~l~-s~s~d----g~i~iwd~~~~~~~~~-~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~ 611 (616)
|..|+ ....+ ..|..+++.++..... +-.|.. .+.++.+. .+.++++...||..++|-
T Consensus 330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 55544 44333 2566677765322222 223333 34444443 234556667777655543
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.01 E-value=0.0098 Score=64.72 Aligned_cols=232 Identities=11% Similarity=0.060 Sum_probs=138.7
Q ss_pred CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640 330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG 408 (616)
Q Consensus 330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (616)
....|+..++.......... ....+..++|++....|+ +-...+.|+.+++..... .......+..
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------------~~~~~~vi~~ 468 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISR 468 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECS
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------------CcceeEEEec
Confidence 44568888887655444333 456678999998655555 444567788888752100 0122233333
Q ss_pred CccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecCCce
Q psy3640 409 HSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS-D-QTANLWTVGGAV 485 (616)
Q Consensus 409 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~ 485 (616)
.......+++.+.+..| ++-...+.|.+.++........+...-.....|+++|.+..|+.+.. . +.|...++....
T Consensus 469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 548 (791)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence 44556788998877544 45555688999998765544444444556899999998666666553 2 678888886643
Q ss_pred eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeec--cccCEEEEEEecCCCEEEEEECC
Q psy3640 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYG--HSNEVSKVSFHPTGKLVLSGSQD 562 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spdg~~l~s~s~d 562 (616)
.. .+.. ........+++++.+..|+.+.. .+.|...++....... .... .-.....|++..+ .+.++-...
T Consensus 549 ~~--~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~-v~~~~~~l~~P~glav~~~-~lYwtD~~~ 622 (791)
T 3m0c_C 549 IY--SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFED-KVFWTDIIN 622 (791)
T ss_dssp EE--EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEEETT-EEEEEETTT
T ss_pred eE--EEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE-EecCCCccCCCCEEEEeCC-EEEEEECCC
Confidence 22 1211 22234667999987777776654 5689999987643222 2222 2233456666433 333444456
Q ss_pred CcEEEecCCcCeeeeEec
Q psy3640 563 TTCRLWSTESGECIQVLK 580 (616)
Q Consensus 563 g~i~iwd~~~~~~~~~~~ 580 (616)
+.|...+..+|+.+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 778888877786665554
No 300
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.00 E-value=0.0072 Score=61.39 Aligned_cols=250 Identities=8% Similarity=-0.021 Sum_probs=141.7
Q ss_pred cEEEEEEcCC--CCEEE-EECCCcEEEEeCCCCceEEEeeCC---CCcEEEEEE-------eCCCCCEEEEEECCC----
Q psy3640 231 VVYAVAFSEP--YGCLT-GSYDRTCKLWDIKSGHEICTYRGH---QNVVYAVAF-------SEPYGDKILTGSFDK---- 293 (616)
Q Consensus 231 ~I~~l~fs~~--~~lls-~s~d~~I~iwd~~~~~~~~~~~~h---~~~V~~l~~-------~~~~~~~l~s~s~dg---- 293 (616)
....|+|.|. +.++. ....+.|++.|++++......... ......++| + ++++.++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence 4678899983 44444 444577999999888776555432 246899999 8 7788666666554
Q ss_pred ---eEEEEeCCC-ccee-----EEe--eeceeeEEEcCCC-CEEEEEeCCCcEEEEECC-------CCce----------
Q psy3640 294 ---TLKLWASAK-EECI-----QTY--RGHSAEVTFSPDQ-STFCSCSMDHTARIFNTN-------SGQE---------- 344 (616)
Q Consensus 294 ---~i~iwd~~~-~~~~-----~~~--~~~~~~v~~~~~~-~~l~~~~~dg~i~i~d~~-------~~~~---------- 344 (616)
.|.+.+... +... ..+ -.+...++++|++ .++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 255665443 2221 122 1345567899954 555566677889999987 5543
Q ss_pred -eEE-ee-cCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCc---ccccccccccCCcc-eEEEecCcccee-E
Q psy3640 345 -MHT-LK-AHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTR---NAYAESTYRASHKP-IHILTGHSQEIS-N 415 (616)
Q Consensus 345 -~~~-~~-~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~i~-~ 415 (616)
... +. +.......++|+|+|+.|..+ +..+.|+.++........ ....... ...... -......-.... .
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCCCeEE
Confidence 112 11 123345799999999965554 456788887654211000 0000000 000000 000000001122 3
Q ss_pred EEEc-------cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC------------------------CCCEEEEEEcCC-
Q psy3640 416 CLFN-------FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH------------------------EDEVLDIAFDYS- 463 (616)
Q Consensus 416 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~l~~~~~- 463 (616)
++.. .++.+.++-..++.|+.++ .++. +.++.+. -.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4443 4566666666778899998 4553 4444322 124678899986
Q ss_pred CCEEEEEeCCCcEEEEecCCc
Q psy3640 464 GSKLATASSDQTANLWTVGGA 484 (616)
Q Consensus 464 ~~~l~~~~~dg~i~iwd~~~~ 484 (616)
+.++++=..+..|+.+++...
T Consensus 456 g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp TEEEEEETTTTEEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEECCCC
Confidence 666666666778888887654
No 301
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.99 E-value=0.0018 Score=62.18 Aligned_cols=189 Identities=12% Similarity=0.218 Sum_probs=122.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEecCCceeeeeE
Q psy3640 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS----GS---KLATASS---DQTANLWTVGGAVELLQT 490 (616)
Q Consensus 421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~ 490 (616)
...+++.....+-+.+||+ +++.++.+.. +.++.+..-|. |+ ++++... ++++.+|++......+..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456666677788999999 8888888753 66777776663 22 2333333 578999977532222333
Q ss_pred Eecc--C--CCeeeEEEEEE--cCC-CC-EEEEEeCCCcEEEEecCC------ceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640 491 FYGH--S--NEVSKVLDIAF--DYS-GS-KLATASSDQTAKLWTVGG------AVELLQTFYGHSNEVSKVSFHPTGKLV 556 (616)
Q Consensus 491 ~~~~--~--~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~~------~~~~~~~~~~h~~~v~~l~~spdg~~l 556 (616)
.... . .....+..+|+ +|. +. ++++...+|.+..|++.. ..+.++.+.- .+.+-.+...+....|
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL 194 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence 3111 1 11134455677 774 44 688888899999998832 2344555543 4578888999988899
Q ss_pred EEEECCCcEEEecCC-----cCeeeeEec-cCc-ccEEEEEEe--eCCC-EEEEee-CCCcEEEcccC
Q psy3640 557 LSGSQDTTCRLWSTE-----SGECIQVLK-AHE-DDVFSCGFN--YNGD-TIITAS-KDNTCCIWRSM 613 (616)
Q Consensus 557 ~s~s~dg~i~iwd~~-----~~~~~~~~~-~h~-~~V~~l~~s--~~~~-~l~t~s-~Dg~i~vW~~~ 613 (616)
..+-++..|..++.+ +++.+..+. ++- ..+..|++- ++++ +|++++ .++++.+|+..
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999998766666644 355665553 222 358888874 4555 666666 56799999985
No 302
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.91 E-value=0.012 Score=57.55 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=124.7
Q ss_pred CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceE--EEee---CCCCcEEEEEEeCCC---CCEE-EEEECC-----Ce
Q psy3640 229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEI--CTYR---GHQNVVYAVAFSEPY---GDKI-LTGSFD-----KT 294 (616)
Q Consensus 229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~--~~~~---~h~~~V~~l~~~~~~---~~~l-~s~s~d-----g~ 294 (616)
-.....++|.|+++++++..++.|.+++ +++.. ..+. ........++++ |+ +..| ++-+.. ..
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccE
Confidence 3456799999999988888889999998 44422 2221 124578899998 55 3444 444432 56
Q ss_pred EEEEeCCCcc-----ee-EEeee------ceeeEEEcCCCCEEEEEeC-------------CCcEEEEECCC--------
Q psy3640 295 LKLWASAKEE-----CI-QTYRG------HSAEVTFSPDQSTFCSCSM-------------DHTARIFNTNS-------- 341 (616)
Q Consensus 295 i~iwd~~~~~-----~~-~~~~~------~~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~-------- 341 (616)
|..++...+. .+ ..+.. ....++|.|++.+.++.+. .|.|.-++...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 7778776432 11 11221 1246799999976666432 14565565542
Q ss_pred ------CceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcE------EEEeccccc--CCcccccccccccCCcceEEE
Q psy3640 342 ------GQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSI------VVWDIQYQF--GTRNAYAESTYRASHKPIHIL 406 (616)
Q Consensus 342 ------~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i------~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 406 (616)
...+.. .++. ....++|+| ++.++++-.....+ .+.-+.... .-..............+...+
T Consensus 187 ~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 187 LGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 011111 1232 246789999 66655554333331 122222111 000000000000011233333
Q ss_pred ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe----E--EEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC----C--FYTLKNHEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 407 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~--~~~~~~~~~~v~~l~~~~~~~~l~~~~ 471 (616)
. +......++| .++.++++....+.|...++.... . ...+......+..+++.|+|.++++..
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2 2234456666 567666666666777777765332 1 122222346789999999997766654
No 303
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.90 E-value=0.016 Score=54.46 Aligned_cols=259 Identities=7% Similarity=0.114 Sum_probs=164.7
Q ss_pred CcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEE
Q psy3640 209 RTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL 287 (616)
Q Consensus 209 g~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~ 287 (616)
..|.|-|+.++....+- -.-. +.-.+|..++++--...++.|+|+++.+.+....- ...|.--.|. +.+.|+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWi--s~~~L~ 121 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWI--SLNTVA 121 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEEC--SSSEEE
T ss_pred CEEEEEECCCCCCccccccccc----eeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEec--CCCeEE
Confidence 37889999886554221 1111 22347777777655689999999999998888874 4577777785 345666
Q ss_pred EEECCCeEEEEeCCCc-ceeEEeeecee----eE---EEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeecCC
Q psy3640 288 TGSFDKTLKLWASAKE-ECIQTYRGHSA----EV---TFSPDQSTFCSCSM-------DHTARIFNTNSGQEMHTLKAHT 352 (616)
Q Consensus 288 s~s~dg~i~iwd~~~~-~~~~~~~~~~~----~v---~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~ 352 (616)
-.+. ..|.-|++... .+.+.+..|.. .+ ..+++.++++..+- .|.+.+|..+. +..+.+.+|.
T Consensus 122 lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 199 (365)
T 2xzh_A 122 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 199 (365)
T ss_dssp EEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeee
Confidence 5554 68999998753 55555554332 22 56888887765432 37788999874 4566777887
Q ss_pred cCEEEEEEcCC---CCEEEEEEC---CCcEEEEecccccCCcccccccccccCCcceEEEec---CccceeEEEEccCCC
Q psy3640 353 GPVISLQFSSD---RNMLITGSF---DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG---HSQEISNCLFNFSNS 423 (616)
Q Consensus 353 ~~v~~l~~~~~---~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 423 (616)
+....+....+ .++++.+.. .+.+++.++.........+ ..+....+.. ..+--.++..++...
T Consensus 200 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f-------~kk~vdi~fppea~~DFPVamqvs~kyg 272 (365)
T 2xzh_A 200 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKAVDVFFPPEAQNDFPVAMQISEKHD 272 (365)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC-------CCEEEEECCCTTCTTCCEEEEEEETTTT
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc-------ccccceeeCCccccCCceEEEEecccCC
Confidence 66544443221 123333332 2588888885431111110 1111111111 234455777888888
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
.+..-+.-|.+++||+.++.++..-+-....|..-+.+....-++.....|.+.--.++.
T Consensus 273 viyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 273 VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred EEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 999999999999999999999998887778877666655555555666777766655544
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.89 E-value=0.0046 Score=58.75 Aligned_cols=199 Identities=9% Similarity=0.142 Sum_probs=122.8
Q ss_pred CccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEE-eec----CC--CCEEEEEE---cCCCCEEEEEe------
Q psy3640 409 HSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYT-LKN----HE--DEVLDIAF---DYSGSKLATAS------ 471 (616)
Q Consensus 409 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~~~~~~l~~~~------ 471 (616)
....-.++.|.+....+..++ ..+.|..||...+..... +.. .. ..+..+.+ +|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 333445678887666666666 689999999976543333 221 11 13678999 68877777544
Q ss_pred -------CCCcEEEEecC---CceeeeeEEe-ccC-C-------CeeeEEEEEEcCCCCEEEEEeCC-CcEEEEecCCce
Q psy3640 472 -------SDQTANLWTVG---GAVELLQTFY-GHS-N-------EVSKVLDIAFDYSGSKLATASSD-QTAKLWTVGGAV 531 (616)
Q Consensus 472 -------~dg~i~iwd~~---~~~~~~~~~~-~~~-~-------~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~ 531 (616)
.+..+..||+. ++......-. ... . .......++.+++|+..++++.. +.|...+....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence 25779999988 4433322221 111 0 22357789999999999999988 88888887653
Q ss_pred EEeEEeec-----cccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee--eeEec--cC---cccEEE-EEEeeCCCE-
Q psy3640 532 ELLQTFYG-----HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC--IQVLK--AH---EDDVFS-CGFNYNGDT- 597 (616)
Q Consensus 532 ~~~~~~~~-----h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~--~~~~~--~h---~~~V~~-l~~s~~~~~- 597 (616)
........ .....+.|+++|+|+.|++....|.+..+|+.+... +. .. +. -..... +.--.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence 22111111 112367999999999998887799999999875433 21 11 21 112233 344457777
Q ss_pred EEEeeCCCcEEE
Q psy3640 598 IITASKDNTCCI 609 (616)
Q Consensus 598 l~t~s~Dg~i~v 609 (616)
|++.+..+.+.+
T Consensus 249 lV~~~~~~~~~l 260 (334)
T 2p9w_A 249 LVGARAPYAISF 260 (334)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEcCCCCEEEE
Confidence 455545554333
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.89 E-value=0.023 Score=55.63 Aligned_cols=260 Identities=8% Similarity=0.122 Sum_probs=165.8
Q ss_pred CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEE
Q psy3640 209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT 288 (616)
Q Consensus 209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s 288 (616)
..|.|-|+.++..+.+-. -.--+.-.+|..++++--...++.|+|+++.+.+....-.. .|.--.|.. .+.|+.
T Consensus 48 ~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~l 121 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVAL 121 (494)
T ss_dssp CEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEE
T ss_pred CeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEE
Confidence 378889988765542211 01113345677776655568999999999999888887544 555666652 355555
Q ss_pred EECCCeEEEEeCCCc-ceeEEeeecee----eE---EEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEeecCCc
Q psy3640 289 GSFDKTLKLWASAKE-ECIQTYRGHSA----EV---TFSPDQSTFCSCS-------MDHTARIFNTNSGQEMHTLKAHTG 353 (616)
Q Consensus 289 ~s~dg~i~iwd~~~~-~~~~~~~~~~~----~v---~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~ 353 (616)
.+ +..|.-|++... .+.+.+..|.. .+ ..+++.++++..+ -.|.+.+|..+. +..+.+.+|.+
T Consensus 122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa 199 (494)
T 1bpo_A 122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA 199 (494)
T ss_dssp EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEE
T ss_pred Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeee
Confidence 54 478999999753 45555554332 22 5788888876443 237788999874 45667778877
Q ss_pred CEEEEEEcCCC---CEEEEEECC---CcEEEEecccccCCcccccccccccCCcceEEE---ecCccceeEEEEccCCCE
Q psy3640 354 PVISLQFSSDR---NMLITGSFD---SSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL---TGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 354 ~v~~l~~~~~~---~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~ 424 (616)
....+....+. +.++.+... +.+++.++.........+ ..+..... ....+--.++..++....
T Consensus 200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-------~kk~vdv~fppe~~~DFPvamqvs~kygv 272 (494)
T 1bpo_A 200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKAVDVFFPPEAQNDFPVAMQISEKHDV 272 (494)
T ss_dssp EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-------CCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-------cceeeeeeCCcccccCceeEEEecccCCE
Confidence 66555543221 244444432 789999886431111111 11111111 112334557788888889
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
+..-+.-|.+++||+.++.++..-+-....|..-+.+....-++.....|.+.--.++.
T Consensus 273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 99999999999999999999998887778887776666655666666777776665544
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.88 E-value=0.0045 Score=58.79 Aligned_cols=204 Identities=10% Similarity=0.126 Sum_probs=127.0
Q ss_pred CcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecC-------ccceeEEEE---cc
Q psy3640 352 TGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLF---NF 420 (616)
Q Consensus 352 ~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~---~~ 420 (616)
...-.++.|++....+..++ ..++|..||... .......... ...+..+.+ .+
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~----------------~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~ 75 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT----------------QSHFNVVIDGASSNGDGEQQMSGLSLLTHDN 75 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTT----------------CCEEEECCTTTCCSSCCSEEEEEEEESSSSS
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC----------------CeEEEEecCCccccCCCcceeeEEEEeccCC
Confidence 33446789988767777777 689999999752 1111111111 113468888 57
Q ss_pred CCCEEEEEeC-------------CCcEEEEeCC---CCeEEEEeec-------------CCCCEEEEEEcCCCCEEEEEe
Q psy3640 421 SNSMIASSSL-------------DGTAKLWDVR---TMCCFYTLKN-------------HEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 421 ~~~~l~~~~~-------------dg~i~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~~~~~~l~~~~ 471 (616)
+++++++... +..+..||+. +++.+....- ......+++.+++|+..++++
T Consensus 76 ~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 76 SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 8777775442 5779999999 7776655441 113488999999999999988
Q ss_pred CC-CcEEEEecCCceeeeeEEecc--CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee--cc---ccC
Q psy3640 472 SD-QTANLWTVGGAVELLQTFYGH--SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY--GH---SNE 543 (616)
Q Consensus 472 ~d-g~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h---~~~ 543 (616)
.. +.|...+.... ......... .........++++|+++.|++....|.+..+|+........... +. -..
T Consensus 156 ~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~ 234 (334)
T 2p9w_A 156 LGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSG 234 (334)
T ss_dssp ESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTT
T ss_pred CCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccC
Confidence 88 88777777654 222111111 11222356789999999999988899999999875322001111 21 122
Q ss_pred EEEE-EEecCCCE-EEEEECCCcEEEecCCc
Q psy3640 544 VSKV-SFHPTGKL-VLSGSQDTTCRLWSTES 572 (616)
Q Consensus 544 v~~l-~~spdg~~-l~s~s~dg~i~iwd~~~ 572 (616)
...+ ..-.+|+. |++....+.+.+.+.+.
T Consensus 235 ~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 235 TEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 3443 33457777 55555666666666544
No 307
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.87 E-value=0.02 Score=62.26 Aligned_cols=224 Identities=8% Similarity=-0.071 Sum_probs=135.3
Q ss_pred CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCC----ceEEEeeCCCCcEEEEEEeCC
Q psy3640 208 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFSEP 281 (616)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~~~ 281 (616)
...|+..++.......... ....+..++|.+... ++ +-...+.|+.+++... .....+.........|++.+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~ 481 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 481 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence 3468888887665544333 456678999998544 43 5556788999998753 233344434456678888844
Q ss_pred CCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCCCceeEEeecCCcCEE
Q psy3640 282 YGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNSGQEMHTLKAHTGPVI 356 (616)
Q Consensus 282 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~ 356 (616)
.++++++-...+.|.+.++........+. .....|++.|....|+.... . +.|...++........+...-....
T Consensus 482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~ 561 (791)
T 3m0c_C 482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561 (791)
T ss_dssp TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence 44566666667899999987654433332 23567899998777666653 2 6788888875444333443345678
Q ss_pred EEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEec--CccceeEEEEccCCCEEEEEeCCCc
Q psy3640 357 SLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--HSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 357 ~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
.|++++.+..|+.+.. .+.|...++. .......... .-.....+++. .+.++++-...+.
T Consensus 562 GLavD~~~~~LYwaD~~~~~I~~~d~d----------------G~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 562 GITLDLLSGRLYWVDSKLHSISSIDVN----------------GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 624 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT----------------SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEecCCCeEEEEeCCCCcEEEEecC----------------CCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCE
Confidence 9999987776666653 4678888875 2222222222 11223345542 2334444445577
Q ss_pred EEEEeCCCCeEEEEee
Q psy3640 434 AKLWDVRTMCCFYTLK 449 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~ 449 (616)
|...|..+++.+..+.
T Consensus 625 I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTTCCCCEEEE
T ss_pred EEEEeCCCCcceEEee
Confidence 8878877776555554
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.69 E-value=0.00013 Score=78.73 Aligned_cols=242 Identities=10% Similarity=0.035 Sum_probs=134.3
Q ss_pred CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409 (616)
Q Consensus 331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (616)
.+.|+..++.+.+....+.. ...+..++|++.+..|+.+. ..+.|+.+++...... ......+...
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------------~~~~~~i~~~ 451 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------SSYDTVISRD 451 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------------CCCCCBCCSC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------------cceEEEEeCC
Confidence 45677788776654433332 34567889998766666554 4578888887531000 0011111111
Q ss_pred ccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecCCcee
Q psy3640 410 SQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS-D-QTANLWTVGGAVE 486 (616)
Q Consensus 410 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~ 486 (616)
......+++.+.+ .++++-...+.|.++++........+.........++++|.+.+|+.+.. . +.|..+++.....
T Consensus 452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531 (699)
T ss_dssp C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence 1234457777544 44455455688999998765443333333345678899997665555443 2 6777777755322
Q ss_pred eeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEee--ccccCEEEEEEecCCCEEEEEECCC
Q psy3640 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQDT 563 (616)
Q Consensus 487 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~dg 563 (616)
. .+.. ........++++|++..|+.+. ..+.|.++++...... .... ........|++..+ .++++....+
T Consensus 532 ~--~l~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~-~lywtd~~~~ 605 (699)
T 1n7d_A 532 Y--SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED-KVFWTDIINE 605 (699)
T ss_dssp C--EESC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred e--EEEe--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence 1 1111 1122234689998866555544 5678999998653222 1111 11223445566544 4555555678
Q ss_pred cEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640 564 TCRLWSTESGECIQVLKAHEDDVFSCGF 591 (616)
Q Consensus 564 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~ 591 (616)
.|..++..+|+.+..+.........|++
T Consensus 606 ~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 606 AIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp CEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred eEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 8999998888887776543333344443
No 309
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.66 E-value=0.037 Score=54.18 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=119.4
Q ss_pred CCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEE--EEEe---ccCCcEEEEEEcCC----CCEE-EEECC-----C
Q psy3640 186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI--CTYR---GHQNVVYAVAFSEP----YGCL-TGSYD-----R 250 (616)
Q Consensus 186 h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~---~h~~~I~~l~fs~~----~~ll-s~s~d-----~ 250 (616)
.-.....++|.|+|++++ +..+|.|.+++ +++.. ..+. ........++|+|+ +.+. +.... +
T Consensus 29 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 344678999999998555 45679999998 44422 1111 12457899999998 4433 33332 6
Q ss_pred cEEEEeCCCCc-----eE-EEee---CCCCcEEEEEEeCCCCCEEEEEECC-------------CeEEEEeCCCc-----
Q psy3640 251 TCKLWDIKSGH-----EI-CTYR---GHQNVVYAVAFSEPYGDKILTGSFD-------------KTLKLWASAKE----- 303 (616)
Q Consensus 251 ~I~iwd~~~~~-----~~-~~~~---~h~~~V~~l~~~~~~~~~l~s~s~d-------------g~i~iwd~~~~----- 303 (616)
.|..++...+. .+ ..+. +.......++|. +++.+.++.+.. |.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 78888877542 11 1132 111233688998 788776664421 45665665430
Q ss_pred --------ceeEEeeec--eeeEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eeEEe
Q psy3640 304 --------ECIQTYRGH--SAEVTFSP-DQSTFCSCSMDHTA------RIFNTNSGQ------------------EMHTL 348 (616)
Q Consensus 304 --------~~~~~~~~~--~~~v~~~~-~~~~l~~~~~dg~i------~i~d~~~~~------------------~~~~~ 348 (616)
.......++ ...++|+| ++.++++-...+.+ .+.-+..+. ....+
T Consensus 185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 111111122 33468999 55555544333321 122222221 22233
Q ss_pred ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEE
Q psy3640 349 KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS 428 (616)
Q Consensus 349 ~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 428 (616)
. +......++| .+|+++++.-..+.|...++........ ......+......+..+++.|+|.+.++.
T Consensus 265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~----------~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR----------VLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE----------EEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee----------ecchheecccCCCeeEEEECCCCcEEEEE
Confidence 2 2234567777 3566665555566677766642110000 00011111223567889999998777665
Q ss_pred e
Q psy3640 429 S 429 (616)
Q Consensus 429 ~ 429 (616)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 4
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.58 E-value=0.00018 Score=77.71 Aligned_cols=234 Identities=9% Similarity=-0.086 Sum_probs=131.7
Q ss_pred CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCC----CceEEEeeCCCCcEEEEEEeCC
Q psy3640 208 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEP 281 (616)
Q Consensus 208 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~ 281 (616)
.+.|+..++.+.+....+.. ...+..++|.+.+. ++ +-...+.|+.+++.. ......+.........+++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35688888877655443332 34566889988665 33 434568899999875 2222222212223456777644
Q ss_pred CCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCCCceeEEeecCCcCEE
Q psy3640 282 YGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNSGQEMHTLKAHTGPVI 356 (616)
Q Consensus 282 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~ 356 (616)
.++++++-...+.|.+.++........+. .....+++.|.+..|+.+.. . +.|..+++........+...-....
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 543 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence 45555655667889999987654433332 23456789987665555443 2 6788877754332222222233457
Q ss_pred EEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeCCCc
Q psy3640 357 SLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSLDGT 433 (616)
Q Consensus 357 ~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~ 433 (616)
.|+|+|++..|+.+ +..+.|..+++.. ........ ........+++..+ .++++....+.
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~ 606 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 606 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSS----------------SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCC----------------CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence 89999876555544 4567888888752 11111111 11122334444433 45555556688
Q ss_pred EEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640 434 AKLWDVRTMCCFYTLKNHEDEVLDIA 459 (616)
Q Consensus 434 i~iwd~~~~~~~~~~~~~~~~v~~l~ 459 (616)
|..+|..+++.+..+.........|+
T Consensus 607 V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 607 IFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEEEEccCCCceEEeecCCCCCcEEE
Confidence 99999888887776654333333443
No 311
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.57 E-value=0.07 Score=52.15 Aligned_cols=239 Identities=12% Similarity=0.076 Sum_probs=128.3
Q ss_pred CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCc-eEEEee---CCCCcEEEEEEeCCC----CCEEEEEEC---C----C
Q psy3640 229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH-EICTYR---GHQNVVYAVAFSEPY----GDKILTGSF---D----K 293 (616)
Q Consensus 229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~-~~~~~~---~h~~~V~~l~~~~~~----~~~l~s~s~---d----g 293 (616)
-.....++|.|+++++++..++.|++++ .+++ .+..+. ........|+++ |+ +...++-+. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCcce
Confidence 4557899999999988888889999997 4554 222221 223568899998 54 444444432 3 5
Q ss_pred eEEEEeCCCc-------cee-EEeee----ceeeEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q psy3640 294 TLKLWASAKE-------ECI-QTYRG----HSAEVTFSPDQSTFCSCSM-------------DHTARIFNTNSG------ 342 (616)
Q Consensus 294 ~i~iwd~~~~-------~~~-~~~~~----~~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------ 342 (616)
.|..|+.... +.+ ..+.. ....++|.|++.+.++.+. .|.|.-++....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543 111 11221 1245799999987766432 245555555421
Q ss_pred ---ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCC---cEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640 343 ---QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDS---SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415 (616)
Q Consensus 343 ---~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 415 (616)
..+. ..++.. ...++|+| +++++++-.... .|.+........-..............+...+.........
T Consensus 186 f~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 1122 123333 36899999 566554433222 23332211000000000000000011233333122335567
Q ss_pred EEE-------ccCCCEEEEEeCCCcEEEEeCCCC-eEE--EEee-cCCCCEEEEEEcCCCCEEEEEe
Q psy3640 416 CLF-------NFSNSMIASSSLDGTAKLWDVRTM-CCF--YTLK-NHEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 416 ~~~-------~~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~~~~~~~l~~~~ 471 (616)
+++ ..++.++++....+.|...++... ... ..+. .....+..+++.|+|.+.++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 777 356777777666778888888753 222 2222 2346789999999997666654
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.40 E-value=0.073 Score=51.67 Aligned_cols=205 Identities=13% Similarity=0.139 Sum_probs=110.6
Q ss_pred EEEEEEcCCCCEEEEE------------ECCCcEEEEecccccCCcccccccccccCCcceEEEec-----CccceeEEE
Q psy3640 355 VISLQFSSDRNMLITG------------SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-----HSQEISNCL 417 (616)
Q Consensus 355 v~~l~~~~~~~~l~~g------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~ 417 (616)
...++..|+|..+++. ..+|.|.++|....... ...+ .+.+ ..-....+.
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~------------~~~l-~~~g~~~~~~~f~PhGi~ 118 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA------------VSEL-EIIGNTLDISSFNPHGIS 118 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC------------EEEC-EEECSSCCGGGCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc------------eEEE-EccCCCCCcCceeeeeeE
Confidence 3566677776444443 16899999998632110 0111 1111 122344555
Q ss_pred Ecc--CCC--EEEEEeC--CCcEEEEeCCC--C--eEEEEeecC-CCCEEEEEEcCCCCEEEEEeC--------------
Q psy3640 418 FNF--SNS--MIASSSL--DGTAKLWDVRT--M--CCFYTLKNH-EDEVLDIAFDYSGSKLATASS-------------- 472 (616)
Q Consensus 418 ~~~--~~~--~l~~~~~--dg~i~iwd~~~--~--~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~-------------- 472 (616)
+.+ ++. ++++-.. +.++.+|++.. . ..+..+.+. -...+++++.++|.+.++...
T Consensus 119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 544 343 3444333 45677776644 2 223333322 246899999999987776541
Q ss_pred ---CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCc--eEEeEEeeccccCEEE
Q psy3640 473 ---DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGA--VELLQTFYGHSNEVSK 546 (616)
Q Consensus 473 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~ 546 (616)
.|.+..++... ..... .....-..++|+||++.|+.+. ..+.|..|++... ....+.+ ...+..-.
T Consensus 199 ~~~~g~vyr~d~~~---~~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDG 270 (355)
T 3sre_A 199 GLAWSFVTYYSPND---VRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDN 270 (355)
T ss_dssp TCCCEEEEEECTTC---CEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEE
T ss_pred cCCccEEEEEECCe---EEEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCce
Confidence 23444444421 11111 1122345789999999887766 4789999998632 2222233 23466788
Q ss_pred EEEec-CCCEEEEEECC-CcEEEecCC--cCeeeeEec
Q psy3640 547 VSFHP-TGKLVLSGSQD-TTCRLWSTE--SGECIQVLK 580 (616)
Q Consensus 547 l~~sp-dg~~l~s~s~d-g~i~iwd~~--~~~~~~~~~ 580 (616)
+++.+ +|++.+++..+ +.|..|+.+ .+..+..++
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 99999 59887766544 344445544 244444443
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.30 E-value=0.02 Score=54.57 Aligned_cols=146 Identities=8% Similarity=0.022 Sum_probs=74.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecCC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeee
Q psy3640 421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELL 488 (616)
Q Consensus 421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 488 (616)
++.+++.|+.+ ..+.+||..+.+-...-.... .....+. .++..++.|+.+ ..+.+||+.+.. .
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W 187 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH--W 187 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE--E
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc--E
Confidence 57777777654 358899988765433221111 1112222 256666666644 458888886642 1
Q ss_pred eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEECC
Q psy3640 489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD 562 (616)
Q Consensus 489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 562 (616)
...............+. .++..++.|+.+ ..+.+||+.+.. ..+..+.........+ .-++++++.|+.+
T Consensus 188 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~ 263 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYD 263 (301)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred EeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcC
Confidence 11111111111111122 256777777764 568999987642 2221111111112222 2367777777755
Q ss_pred -----CcEEEecCCcCe
Q psy3640 563 -----TTCRLWSTESGE 574 (616)
Q Consensus 563 -----g~i~iwd~~~~~ 574 (616)
..+.+||+++.+
T Consensus 264 ~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 264 GNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SSSBEEEEEEEETTTTE
T ss_pred CCcccccEEEEcCCCCe
Confidence 357788877654
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.27 E-value=0.015 Score=55.44 Aligned_cols=186 Identities=6% Similarity=0.012 Sum_probs=94.5
Q ss_pred cCCCEEEEEeCC-----CcEEEEeCCCCe---EEE--EeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCc
Q psy3640 420 FSNSMIASSSLD-----GTAKLWDVRTMC---CFY--TLKNHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGA 484 (616)
Q Consensus 420 ~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 484 (616)
.++.+++.|+.+ ..+.+||..+.+ -.. .+.........+.. ++..++.|+.+ ..+.+||..+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 356777777754 368999987765 222 22111112222222 56666666543 35778887664
Q ss_pred eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 485 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
.-. ...........-..+. .+++.++.|+.+ ..+.+||..+.. ..+..+.........+. -++++++.
T Consensus 139 ~W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~ 212 (301)
T 2vpj_A 139 QWS--MLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVV 212 (301)
T ss_dssp EEE--EEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred eEE--ECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEE
Confidence 211 1111111111111122 267777777654 468889986642 11111111111112222 36677777
Q ss_pred EECC-----CcEEEecCCcCeeee--EeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640 559 GSQD-----TTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR 615 (616)
Q Consensus 559 ~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~ 615 (616)
|+.+ ..+.+||+.+.+-.. .+........ +...++++++.|+.+ ..+.+||+.++
T Consensus 213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCCcEEECCCCCCccccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 7754 468999998765332 2221111112 223377788888766 35777887653
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.26 E-value=0.16 Score=49.51 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=122.5
Q ss_pred CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-eeEEee------eceeeEEEcCC---CCEEEEEeC----C----
Q psy3640 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYR------GHSAEVTFSPD---QSTFCSCSM----D---- 331 (616)
Q Consensus 270 ~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~------~~~~~v~~~~~---~~~l~~~~~----d---- 331 (616)
-.....++|. ++++ ++.+..+|.|++++. +++ .+..+. .....++++|+ +..|+++.. +
T Consensus 28 l~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPL-GGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEE-ETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEc-CCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4567899999 6776 555566799999973 444 222211 23455799997 555555443 2
Q ss_pred CcEEEEECCCC--c-----ee-EEeec-CCcCEEEEEEcCCCCEEEEEECC-------------CcEEEEecccccCCcc
Q psy3640 332 HTARIFNTNSG--Q-----EM-HTLKA-HTGPVISLQFSSDRNMLITGSFD-------------SSIVVWDIQYQFGTRN 389 (616)
Q Consensus 332 g~i~i~d~~~~--~-----~~-~~~~~-~~~~v~~l~~~~~~~~l~~g~~d-------------g~i~iwd~~~~~~~~~ 389 (616)
+.|..|+.... . .+ ..+.. .......++|.|||.+.++.+.. |.|..++........+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56777877644 1 11 11221 11224679999999866664322 3344444321000000
Q ss_pred cccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCC---cEEEEeCCC--------C--------eEEEEee
Q psy3640 390 AYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDG---TAKLWDVRT--------M--------CCFYTLK 449 (616)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~--------~--------~~~~~~~ 449 (616)
.. . .......++ .....++|++ ++.++++-.... .|.+..... + .++..+.
T Consensus 185 pf-------~-~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~ 255 (354)
T 3a9g_A 185 PF-------P-NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG 255 (354)
T ss_dssp SS-------T-TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred CC-------C-CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC
Confidence 00 0 111122233 2345789999 565555433222 133322100 0 1222221
Q ss_pred cCCCCEEEEEEc-------CCCCEEEEEeCCCcEEEEecCCceeee--eEEeccCCCeeeEEEEEEcCCCCEEEEEe
Q psy3640 450 NHEDEVLDIAFD-------YSGSKLATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAFDYSGSKLATAS 517 (616)
Q Consensus 450 ~~~~~v~~l~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 517 (616)
........++|. .+|.++++....+.|...++....... ..+.. .....+..+++.|||.++++..
T Consensus 256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEe
Confidence 123457788883 567677766667788888887532221 22221 1234578899999998776654
No 316
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0057 Score=58.89 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=74.1
Q ss_pred CCEEEEECCCcEEEEeCCCCceEEEeeCC--CCcEEEEEE-eCCCCCEEEEE--ECCCeEEEEeCCCcceeEEeeece--
Q psy3640 241 YGCLTGSYDRTCKLWDIKSGHEICTYRGH--QNVVYAVAF-SEPYGDKILTG--SFDKTLKLWASAKEECIQTYRGHS-- 313 (616)
Q Consensus 241 ~~lls~s~d~~I~iwd~~~~~~~~~~~~h--~~~V~~l~~-~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~-- 313 (616)
+.+++++.||.|.-.|..+|+...+++.. ...+. ..- ..+.+..++.+ +.||.+..++..+|.....+....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 44679999999999999999999998754 22222 110 00112244444 589999999998885544332211
Q ss_pred --eeEEEc-----------CCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640 314 --AEVTFS-----------PDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350 (616)
Q Consensus 314 --~~v~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 350 (616)
..+... ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112211 1567888999999999999999999998864
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.18 E-value=0.029 Score=53.50 Aligned_cols=185 Identities=10% Similarity=0.051 Sum_probs=93.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecC--CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCceeee
Q psy3640 421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLKNH--EDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGAVELL 488 (616)
Q Consensus 421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 488 (616)
++.+++.|+.+ ..+.+||..+.+-...-... ........ .++..++.|+.++ .+.+||+.+.. .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE--W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence 66777777754 35889998877543322111 11112222 2566777776553 46677776542 1
Q ss_pred eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-------CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640 489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-------QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s 560 (616)
...............+. .+++.++.|+.+ ..+.+||..+.. ..+..+.........+. -++++++.|+
T Consensus 137 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 212 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGG 212 (302)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECC
Confidence 11111111111111112 256667776542 458889987642 22211111111122222 2677778877
Q ss_pred CC-----CcEEEecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeCCC-----cEEEcccCCC
Q psy3640 561 QD-----TTCRLWSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASKDN-----TCCIWRSMNR 615 (616)
Q Consensus 561 ~d-----g~i~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg-----~i~vW~~~~~ 615 (616)
.+ ..+.+||+.+.+-. ..+......-. +...++++++.|+.++ .+.+||+.+.
T Consensus 213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG--VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCCCEeeCCCCCCccccCe--EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 54 36889998876432 22221111111 2233778888888664 4788887654
No 318
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.15 E-value=0.21 Score=48.65 Aligned_cols=244 Identities=12% Similarity=0.080 Sum_probs=125.6
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC---CCEEEEEe
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS---NSMIASSS 429 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~ 429 (616)
.....|+|.|+|+.++++...|.|++++....... .. ...+ ............++++|+ +..|....
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~--~~-------~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA--PL-------SGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC--CC-------BSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee--Ee-------cCCc-ccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 35589999999983445566899998874311000 00 0000 011122344578999985 44444443
Q ss_pred -C-------CCcEEEEeCCCC----eEEEE-eecC------CCCEEEEEEcCCCCEEEEEeCC-------------CcEE
Q psy3640 430 -L-------DGTAKLWDVRTM----CCFYT-LKNH------EDEVLDIAFDYSGSKLATASSD-------------QTAN 477 (616)
Q Consensus 430 -~-------dg~i~iwd~~~~----~~~~~-~~~~------~~~v~~l~~~~~~~~l~~~~~d-------------g~i~ 477 (616)
. ...|..|+.... ..... +... ......++|.|+|.+.++.+.. |.|.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence 2 235666665432 11111 1111 1124579999999655554332 3455
Q ss_pred EEecCCcee------------eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCc-------------
Q psy3640 478 LWTVGGAVE------------LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGA------------- 530 (616)
Q Consensus 478 iwd~~~~~~------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~------------- 530 (616)
-++...... ......++ .....++|+|....|.++.... .=.|.-+..+
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~ 243 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGIN 243 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBC
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCC
Confidence 555543210 00011111 2356789999444444443321 1122211110
Q ss_pred -----------------eEEeEEeeccccCEEEEEEec-------CCCEEEEEECCCcEEEecCCcCeeeeE---eccCc
Q psy3640 531 -----------------VELLQTFYGHSNEVSKVSFHP-------TGKLVLSGSQDTTCRLWSTESGECIQV---LKAHE 583 (616)
Q Consensus 531 -----------------~~~~~~~~~h~~~v~~l~~sp-------dg~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~ 583 (616)
......+ .+......++|.. +|+++++....+.|...+++.++.+.. +....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 322 (353)
T 2g8s_A 244 YSGFKIPEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRG 322 (353)
T ss_dssp TTSSCCTTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGC
T ss_pred CCCCccCcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCC
Confidence 0111112 2234577788864 466777666778888888776654322 22223
Q ss_pred ccEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640 584 DDVFSCGFNYNGDTIITAS-KDNTCCIWRSM 613 (616)
Q Consensus 584 ~~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~ 613 (616)
..+..+++.|||.+.++.. .+| +||++.
T Consensus 323 ~rp~~v~~~pdG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 323 QRIRDVRTGPDGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp CCEEEEEECTTSCEEEEECSTTE--EEEEEE
T ss_pred CceeEEEECCCCcEEEEEeCCCC--EEEEEe
Confidence 5789999999998766543 344 566654
No 319
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.11 E-value=0.044 Score=52.25 Aligned_cols=146 Identities=12% Similarity=0.120 Sum_probs=73.8
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEecCCcee
Q psy3640 421 SNSMIASSSLDG-----TAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-------QTANLWTVGGAVE 486 (616)
Q Consensus 421 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~ 486 (616)
++.+++.|+.++ .+.+||..+.+-...-. ........+. .++..++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~- 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNE- 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTE-
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCc-
Confidence 677777777553 57889988775433211 1111112222 245566665532 357888887642
Q ss_pred eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 487 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s 560 (616)
................+. .++..++.|+.+ ..+.+||..+.. ..+..+.........+ .-++++++.|+
T Consensus 185 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG 259 (302)
T 2xn4_A 185 -WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGG 259 (302)
T ss_dssp -EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECC
T ss_pred -EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECC
Confidence 111111111111111122 256777777764 468899987642 2221111111111222 23677778877
Q ss_pred CCC-----cEEEecCCcCe
Q psy3640 561 QDT-----TCRLWSTESGE 574 (616)
Q Consensus 561 ~dg-----~i~iwd~~~~~ 574 (616)
.++ .+.+||+++.+
T Consensus 260 ~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BCSSSBCCCEEEEETTTTE
T ss_pred cCCCcccccEEEEcCCCCe
Confidence 653 48888887664
No 320
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.05 E-value=0.026 Score=63.71 Aligned_cols=219 Identities=11% Similarity=0.161 Sum_probs=132.3
Q ss_pred CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372 (616)
Q Consensus 293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~ 372 (616)
.+|.|.|+.++..+..-+-.....-.+|..+.++.-. ..++.+||+++.+.+.+..- ..+|.--.|-.+. .|+..+
T Consensus 48 ~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT- 123 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT- 123 (1630)
T ss_pred ceEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-
Confidence 4788888888766544444444456889888887765 78899999999888887764 4467777776553 344333
Q ss_pred CCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEe-------CCCcEEEEeCCC
Q psy3640 373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSS-------LDGTAKLWDVRT 441 (616)
Q Consensus 373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~ 441 (616)
+..|.-|++... ..|...+..| ...|..-..+++.++++..+ ..|.+.+|..+.
T Consensus 124 ~~aVyHW~~~~~---------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 124 DNAVYHWSMEGE---------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred CCeEEEeccCCC---------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 568999999631 1222222222 34555666677777766433 347888998765
Q ss_pred CeEEEEeecCCCCEEEEEEc--CC-CCEEEEEeC---CCcEEEEecCCce--------eeeeEEeccCCCeeeEEEEEEc
Q psy3640 442 MCCFYTLKNHEDEVLDIAFD--YS-GSKLATASS---DQTANLWTVGGAV--------ELLQTFYGHSNEVSKVLDIAFD 507 (616)
Q Consensus 442 ~~~~~~~~~~~~~v~~l~~~--~~-~~~l~~~~~---dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~i~~~~~s 507 (616)
+. .+.+.+|......+... +. ...++.+.. .+.+++-++.... +....+........--.++..+
T Consensus 189 ~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs 267 (1630)
T 1xi4_A 189 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS 267 (1630)
T ss_pred cc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec
Confidence 43 33455554433333222 11 122222221 2688888885430 1111122221112223467788
Q ss_pred CCCCEEEEEeCCCcEEEEecCCce
Q psy3640 508 YSGSKLATASSDQTAKLWTVGGAV 531 (616)
Q Consensus 508 ~~~~~l~~~~~dg~i~vwd~~~~~ 531 (616)
+....+...+.-|.+.+||+.++.
T Consensus 268 ~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 268 EKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred cccCEEEEEecCceEEEEecccch
Confidence 888899999999999999998863
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.04 E-value=0.063 Score=51.22 Aligned_cols=225 Identities=7% Similarity=0.003 Sum_probs=107.3
Q ss_pred EEEEEeC--CCcEEEEECCCCceeEE--eecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEecccccCCcccccccc
Q psy3640 324 TFCSCSM--DHTARIFNTNSGQEMHT--LKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 324 ~l~~~~~--dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~ 395 (616)
.++.|+. ...+..||..+.+-... +.........+.+ ++.+++.|+.+ ..+.+||.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~---------- 81 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS---------- 81 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE----------
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe----------
Confidence 3444443 34677888776543221 1111111122222 55677777654 567777775321
Q ss_pred cccCCcceEEEecCccceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCeEEEEeecCC--CCEEEEEEcCCCCEE
Q psy3640 396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD------GTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKL 467 (616)
Q Consensus 396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l 467 (616)
...+..+....... .+...++.+++.|+.+ ..+.+||..+.+-...-.... .....+. .++..+
T Consensus 82 ----W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 153 (306)
T 3ii7_A 82 ----WYSKLGPPTPRDSL--AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIY 153 (306)
T ss_dssp ----EEEEECCSSCCBSC--EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEE
T ss_pred ----EEECCCCCccccce--eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEE
Confidence 11111111111111 1222367777777755 458899998875433211111 1112222 255566
Q ss_pred EEEeC---------CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-E
Q psy3640 468 ATASS---------DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-E 532 (616)
Q Consensus 468 ~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~ 532 (616)
+.|+. -..+.+||+.+.. .............-..+.+ +++.++.|+.+ ..+.+||+.+.. .
T Consensus 154 v~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~ 229 (306)
T 3ii7_A 154 VCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK 229 (306)
T ss_dssp EECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred EECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence 66543 3458888887642 1222111111111111222 56677777653 468889987641 2
Q ss_pred EeEEeeccccCEEEEEEecCCCEEEEEECC-----CcEEEecCCcCe
Q psy3640 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQD-----TTCRLWSTESGE 574 (616)
Q Consensus 533 ~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~~~ 574 (616)
.+..+.........+.+ ++++++.|+.+ ..+.+||+++.+
T Consensus 230 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 230 MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 22111111112223333 67788888754 458888887754
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.04 E-value=0.052 Score=51.80 Aligned_cols=186 Identities=10% Similarity=0.055 Sum_probs=95.1
Q ss_pred cCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecC--CCCEEEEEEcCCCCEEEEEeCC------CcEEEEecCCceee
Q psy3640 420 FSNSMIASSSLD----GTAKLWDVRTMCCFYTLKNH--EDEVLDIAFDYSGSKLATASSD------QTANLWTVGGAVEL 487 (616)
Q Consensus 420 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 487 (616)
.++.+++.|+.+ ..+.+||..+.+-...-... ......+.+ ++..++.|+.+ ..+.+||..+..
T Consensus 54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-- 129 (306)
T 3ii7_A 54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-- 129 (306)
T ss_dssp ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence 366777777754 56889999887543322111 111222222 56666777654 458888887642
Q ss_pred eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---------CCcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEE
Q psy3640 488 LQTFYGHSNEVSKVLDIAFDYSGSKLATASS---------DQTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVL 557 (616)
Q Consensus 488 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~ 557 (616)
................+. .+++.++.|+. ...+.+||..+.. ..+..+......-..+. -++++++
T Consensus 130 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 205 (306)
T 3ii7_A 130 WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFA 205 (306)
T ss_dssp EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEE
Confidence 111111111111111112 25666676654 3458899987642 11111111111112222 2667777
Q ss_pred EEECC-----CcEEEecCCcCe--eeeEeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640 558 SGSQD-----TTCRLWSTESGE--CIQVLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR 615 (616)
Q Consensus 558 s~s~d-----g~i~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~ 615 (616)
.|+.+ ..+.+||+.+.+ .+..+.........+. -++.+++.|+.+ +.+.+||+.++
T Consensus 206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 77653 358889987764 2322222222222222 267788888854 45788887654
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.01 E-value=0.17 Score=49.13 Aligned_cols=187 Identities=13% Similarity=0.084 Sum_probs=110.1
Q ss_pred cceeEEEEccCCCEEEEE------------eCCCcEEEEeCCC--CeEE-EEeec-----CCCCEEEEEEcC--CCC-EE
Q psy3640 411 QEISNCLFNFSNSMIASS------------SLDGTAKLWDVRT--MCCF-YTLKN-----HEDEVLDIAFDY--SGS-KL 467 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~l~~~~--~~~-~l 467 (616)
...-.++..++|..++++ ..+|.|.++|..+ .+.. ..+.+ ..-....+.+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566777876555544 2689999999873 2211 12222 123677777755 343 34
Q ss_pred EEE-eC--CCcEEEEecCCcee---eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-----------------CCcEEE
Q psy3640 468 ATA-SS--DQTANLWTVGGAVE---LLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-----------------DQTAKL 524 (616)
Q Consensus 468 ~~~-~~--dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------------dg~i~v 524 (616)
+++ .. +.++.+|++..... ....+.+ ........+.+.++|.+.++... .|.+.-
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 444 33 45777877654322 2222322 34456788999999998887641 244555
Q ss_pred EecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecCCc-Cee--eeEeccCcccEEEEEEee-CCCEEE
Q psy3640 525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWSTES-GEC--IQVLKAHEDDVFSCGFNY-NGDTII 599 (616)
Q Consensus 525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~h~~~V~~l~~s~-~~~~l~ 599 (616)
++... ...+...-...+.++||||++.|..+. ..+.|..|++.. ++. ...+. ..+..-.+++.+ +|++.+
T Consensus 208 ~d~~~----~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 208 YSPND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp ECTTC----CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred EECCe----EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEE
Confidence 55432 122222335678999999998877765 467899999863 332 12332 234456788888 588877
Q ss_pred EeeCC
Q psy3640 600 TASKD 604 (616)
Q Consensus 600 t~s~D 604 (616)
++..+
T Consensus 283 a~~~~ 287 (355)
T 3sre_A 283 GCHPN 287 (355)
T ss_dssp EEESC
T ss_pred EecCC
Confidence 66544
No 324
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.92 E-value=0.35 Score=47.14 Aligned_cols=236 Identities=10% Similarity=0.070 Sum_probs=125.6
Q ss_pred CcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEE---e----eCCCCcEEEEEEeCC---CCCEEEEEEC-------
Q psy3640 230 NVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICT---Y----RGHQNVVYAVAFSEP---YGDKILTGSF------- 291 (616)
Q Consensus 230 ~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~---~----~~h~~~V~~l~~~~~---~~~~l~s~s~------- 291 (616)
.....|+|.|+++ ++++...|.|++++.. +..... + .........++++|. ++...++-+.
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4568999999999 8888899999999853 332111 1 122346789999832 3444444333
Q ss_pred CCeEEEEeCCCc--c--eeEE-e---e-----ec-eeeEEEcCCCCEEEEEeCC-------------CcEEEEECCCC--
Q psy3640 292 DKTLKLWASAKE--E--CIQT-Y---R-----GH-SAEVTFSPDQSTFCSCSMD-------------HTARIFNTNSG-- 342 (616)
Q Consensus 292 dg~i~iwd~~~~--~--~~~~-~---~-----~~-~~~v~~~~~~~~l~~~~~d-------------g~i~i~d~~~~-- 342 (616)
...|..++.... . .... + . .| ...++|.|++.+.++.+.. |.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666665432 1 1111 1 1 11 3458999999665554332 45666666532
Q ss_pred ------------ceeEEeecCCcCEEEEEEcC-CCCEEEEEECC--CcEEEEecccccCC----cc---cccc-------
Q psy3640 343 ------------QEMHTLKAHTGPVISLQFSS-DRNMLITGSFD--SSIVVWDIQYQFGT----RN---AYAE------- 393 (616)
Q Consensus 343 ------------~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~d--g~i~iwd~~~~~~~----~~---~~~~------- 393 (616)
..+.. .++. ....++|+| +++ |.++... +.=.|.-+.....- .. ....
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 11111 2333 357899999 554 4444322 11222222211100 00 0000
Q ss_pred -cccccCCcceEEEecCccceeEEEEc-------cCCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCEEEEEEcC
Q psy3640 394 -STYRASHKPIHILTGHSQEISNCLFN-------FSNSMIASSSLDGTAKLWDVRTMCCFYTL---KNHEDEVLDIAFDY 462 (616)
Q Consensus 394 -~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~ 462 (616)
........+...+..+ .....++|. .++.++++....+.|...++..++..... ......+..+++.|
T Consensus 254 ~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp BSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 0000112333334333 345667765 35677777767788888887766443322 22345799999999
Q ss_pred CCCEEEEE
Q psy3640 463 SGSKLATA 470 (616)
Q Consensus 463 ~~~~l~~~ 470 (616)
+|.+.++.
T Consensus 333 dG~lyv~t 340 (353)
T 2g8s_A 333 DGYLYVLT 340 (353)
T ss_dssp TSCEEEEE
T ss_pred CCcEEEEE
Confidence 99866654
No 325
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.71 E-value=0.07 Score=60.34 Aligned_cols=251 Identities=12% Similarity=0.146 Sum_probs=133.7
Q ss_pred CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411 (616)
Q Consensus 332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (616)
.+|.|.|+..+..+.... -.--+.-.+|..+.++.-. ..++.++|+.. ...+....-..
T Consensus 48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~----------------k~klks~~~~e- 106 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEM----------------KSKMKAHTMTD- 106 (1630)
T ss_pred ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHH----------------hhhhcccccCC-
Confidence 368888888766542211 1223445678777776664 78999999973 22222222222
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEE
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNH----EDEVLDIAFDYSGSKLATAS-------SDQTANLW 479 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~-------~dg~i~iw 479 (616)
+|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+..| ...|..-..+++.++++..+ -.|.+.+|
T Consensus 107 ~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy 184 (1630)
T 1xi4_A 107 DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (1630)
T ss_pred CceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence 222222322 22333333 34799999964 2344444433 45688888889988877544 34788888
Q ss_pred ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEecCCc----eE----EeEEeec---cccCEE
Q psy3640 480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS---DQTAKLWTVGGA----VE----LLQTFYG---HSNEVS 545 (616)
Q Consensus 480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~----~~----~~~~~~~---h~~~v~ 545 (616)
..... ..+.+.+|......+.--...+....+..+.. .+.++|.++... .. ....+.. -.+-..
T Consensus 185 S~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv 262 (1630)
T 1xi4_A 185 SVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (1630)
T ss_pred ecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence 87653 33333343332211100000111112222211 367888877442 01 1111111 123345
Q ss_pred EEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcE
Q psy3640 546 KVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTC 607 (616)
Q Consensus 546 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i 607 (616)
++..|+.-..+..-+.-|.+.++|++||.++..-+-...+|...+-.....-++.....|.|
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence 67777777788888889999999999999886555445555544443332233333344443
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.71 E-value=0.067 Score=51.14 Aligned_cols=185 Identities=9% Similarity=0.015 Sum_probs=92.6
Q ss_pred CCCEEEEEeC----C-----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCc
Q psy3640 421 SNSMIASSSL----D-----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGA 484 (616)
Q Consensus 421 ~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 484 (616)
++.+++.|+. + ..+.+||..+.+-...-. ........+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777665 2 368899988775332211 11111222222 55666666533 35778888664
Q ss_pred eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLS 558 (616)
Q Consensus 485 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s 558 (616)
.- ............-..+.+ ++..++.|+.+ ..+.+||..+.. ..+..+.........+.+ ++++++.
T Consensus 148 ~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~ 221 (308)
T 1zgk_A 148 EW--HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA 221 (308)
T ss_dssp EE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred eE--eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE
Confidence 21 111111111111112222 66777777654 458889886632 111111111111222222 6777777
Q ss_pred EECC-----CcEEEecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640 559 GSQD-----TTCRLWSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR 615 (616)
Q Consensus 559 ~s~d-----g~i~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~ 615 (616)
|+.+ ..+.+||+.+.+-. ..+.........+ .-++++++.|+.+ ..+.+||+.++
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE--EECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 7654 45899998876432 2222111111122 2367788888754 35777887654
No 327
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.68 E-value=0.21 Score=48.94 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=96.1
Q ss_pred cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEE
Q psy3640 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKL 436 (616)
Q Consensus 361 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i 436 (616)
..+|..++++- ++.||.-++.. ...-+.+... -..+..+..+|+|++|+..+.. .|.+
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~----------------~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~V 90 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLT----------------DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFV 90 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTT----------------CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEE
T ss_pred EcCCCEEEEEE-CCEEEEEECCC----------------CCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEE
Confidence 34555565554 56777777652 2222233222 2367889999999999998754 7888
Q ss_pred EeCCCCe------------EEEEeec------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCCceeeeeEEe---
Q psy3640 437 WDVRTMC------------CFYTLKN------HEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFY--- 492 (616)
Q Consensus 437 wd~~~~~------------~~~~~~~------~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--- 492 (616)
-.+..+. ..+.+.- ...+|..+.|+|- +..|++-..|+.|++||+.........+.
T Consensus 91 v~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~ 170 (452)
T 3pbp_A 91 MEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPN 170 (452)
T ss_dssp EECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCC
T ss_pred EEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccc
Confidence 8776221 1122322 2567999999995 56899999999999999986322111221
Q ss_pred ---ccCCCeeeEEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy3640 493 ---GHSNEVSKVLDIAFDYSGSKLATAS--SDQTAKLW 525 (616)
Q Consensus 493 ---~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vw 525 (616)
+.......+.+++|.+++-.|.+.. .+|.|+-.
T Consensus 171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 2223336688999999988888866 77877544
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.66 E-value=0.31 Score=46.57 Aligned_cols=147 Identities=11% Similarity=0.026 Sum_probs=72.3
Q ss_pred CCCEEEEEeCC--------CcEEEEeCCCCeEEEEeecCCCCE-EEEEEcCCCCEEEEEeC-C-----CcEEEEecCCce
Q psy3640 421 SNSMIASSSLD--------GTAKLWDVRTMCCFYTLKNHEDEV-LDIAFDYSGSKLATASS-D-----QTANLWTVGGAV 485 (616)
Q Consensus 421 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~ 485 (616)
++.+++.|+.+ ..+.+||..+.+-...-....... .+++. .+++.++.|+. + ..+.+||..+..
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 56677777632 358899998875332211111111 11222 34566666665 2 468888887642
Q ss_pred eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ-----TAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~ 559 (616)
................+ .-+++.++.|+.++ .+.+||..+.. ..+..+.........+. -++++++.|
T Consensus 177 --W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~G 250 (315)
T 4asc_A 177 --WKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIG 250 (315)
T ss_dssp --EEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEE
T ss_pred --EEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEEC
Confidence 11111111111111112 22667777877654 57888887641 12211111111122222 366777777
Q ss_pred ECCC--------------cEEEecCCcCe
Q psy3640 560 SQDT--------------TCRLWSTESGE 574 (616)
Q Consensus 560 s~dg--------------~i~iwd~~~~~ 574 (616)
+.++ .+.+||+++.+
T Consensus 251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 251 GFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CccccCcCCccccccccCcEEEecCCCCh
Confidence 7532 36677877654
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.54 E-value=0.091 Score=50.17 Aligned_cols=146 Identities=8% Similarity=0.060 Sum_probs=72.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeee
Q psy3640 421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELL 488 (616)
Q Consensus 421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 488 (616)
++++++.|+.+ ..+.+||..+.+-...-. .....-..+.+ ++..++.|+.+ ..+.+||+.+..-
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-- 196 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW-- 196 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--
Confidence 56677776643 358889988765432211 11111122222 55666666544 4588888866421
Q ss_pred eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEECC
Q psy3640 489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD 562 (616)
Q Consensus 489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d 562 (616)
...............+.+ ++..++.|+.+ ..+.+||+.+.. ..+..+.........+. -++++++.|+.+
T Consensus 197 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~ 272 (308)
T 1zgk_A 197 RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYD 272 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcC
Confidence 111111111111112222 66777777764 568999987642 11111111111112222 266777777754
Q ss_pred -----CcEEEecCCcCe
Q psy3640 563 -----TTCRLWSTESGE 574 (616)
Q Consensus 563 -----g~i~iwd~~~~~ 574 (616)
..+.+||+++.+
T Consensus 273 ~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 273 GHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCBCCEEEEEETTTTE
T ss_pred CCcccceEEEEcCCCCE
Confidence 346777776653
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.50 E-value=0.16 Score=48.57 Aligned_cols=177 Identities=8% Similarity=0.013 Sum_probs=88.1
Q ss_pred CcEEEEeCCCCceEE-EeeCCCCcEEEEEEeCCCCCEEEEEEC-----C------CeEEEEeCCCcceeEEeeece--e-
Q psy3640 250 RTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSF-----D------KTLKLWASAKEECIQTYRGHS--A- 314 (616)
Q Consensus 250 ~~I~iwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~-----d------g~i~iwd~~~~~~~~~~~~~~--~- 314 (616)
..+.+||..+++-.. .+..........+.. .++..++.|+. . ..+..||..+.+....-.... .
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 678999998887432 222111122222222 56788888874 1 126778888775432211111 0
Q ss_pred eEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEE--eecCCcCEEEEEEcCCCCEEEEEEC-C-----CcEEE
Q psy3640 315 EVTFSPDQSTFCSCSMD--------HTARIFNTNSGQEMHT--LKAHTGPVISLQFSSDRNMLITGSF-D-----SSIVV 378 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~-d-----g~i~i 378 (616)
..+..-++..++.|+.+ ..+.+||..+.+-... +.........+. .++.+++.|+. + ..+.+
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 169 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCV 169 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEE
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEE
Confidence 11122256666666632 4588999887643221 111111112222 25567777765 2 35788
Q ss_pred EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q psy3640 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG-----TAKLWDVRTMCCF 445 (616)
Q Consensus 379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~ 445 (616)
||..... ...+..+.. ......+...++++++.|+.++ .+.+||+.+.+-.
T Consensus 170 yd~~~~~--------------W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 170 YDPKKFE--------------WKELAPMQT--ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EETTTTE--------------EEECCCCSS--CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EeCCCCe--------------EEECCCCCC--chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 8875321 000000111 1111112223677788887654 5888999887543
No 331
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.45 E-value=0.7 Score=44.54 Aligned_cols=245 Identities=12% Similarity=0.050 Sum_probs=132.0
Q ss_pred EEeccCCcEEEEEEcCCCCEEEEEC-CCcEEEEeCCCCceEE--Ee----eCCCCcEEEEEEeCC---CCCEEEEEE--C
Q psy3640 224 TYRGHQNVVYAVAFSEPYGCLTGSY-DRTCKLWDIKSGHEIC--TY----RGHQNVVYAVAFSEP---YGDKILTGS--F 291 (616)
Q Consensus 224 ~~~~h~~~I~~l~fs~~~~lls~s~-d~~I~iwd~~~~~~~~--~~----~~h~~~V~~l~~~~~---~~~~l~s~s--~ 291 (616)
.+...-.....|+|.|++.++++.. .|.|++++..+++... .+ .........|+++|. ++...++-+ .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 4444445678999999999888887 8999999876665422 22 123457889999842 244444322 3
Q ss_pred CCeEEEEeCCCc----------cee-EEee---ec-eeeEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-
Q psy3640 292 DKTLKLWASAKE----------ECI-QTYR---GH-SAEVTFSPDQSTFCSCSM-------------DHTARIFNTNSG- 342 (616)
Q Consensus 292 dg~i~iwd~~~~----------~~~-~~~~---~~-~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~~- 342 (616)
+..|.-|....+ +.+ ..+. .| ...+.|.|++.+.++.+. .|.|.-.+....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 455666655441 111 1121 12 235899999987777542 355555554422
Q ss_pred --------ceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCC--cccccccccccCCcceEEEecCcc
Q psy3640 343 --------QEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGT--RNAYAESTYRASHKPIHILTGHSQ 411 (616)
Q Consensus 343 --------~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 411 (616)
..+.. .+|.+ ...++|+|+|.+.++-. .++.-.|--+.....- ..............++..+..+..
T Consensus 186 p~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ 263 (347)
T 3das_A 186 APGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA 263 (347)
T ss_dssp CTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred cCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence 11222 24443 36899999877555432 2332222222211100 000000001112334444444333
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGSKLATAS 471 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~ 471 (616)
....++|. ++..+......+.|....+..... ...+......+.+++..|+|.++++.+
T Consensus 264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 45566665 456666666666676666654432 222333456899999999997766544
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.37 E-value=1 Score=45.68 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=67.1
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEecCCceE------------EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640 503 DIAFDYSGSKLATASS-DQTAKLWTVGGAVE------------LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569 (616)
Q Consensus 503 ~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd 569 (616)
.+..+|||+++++++. +.++.++|+..-.. ...... -.-.....+|.++|.-..|-.-|..|.-|+
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 5789999999887765 88999999863111 111111 234567889999995555666899999999
Q ss_pred CCcC----------eeeeEeccCcccEEEEEE------eeCCCEEEEee
Q psy3640 570 TESG----------ECIQVLKAHEDDVFSCGF------NYNGDTIITAS 602 (616)
Q Consensus 570 ~~~~----------~~~~~~~~h~~~V~~l~~------s~~~~~l~t~s 602 (616)
+... ..+..+..|-.+- .+.- .|||++|++..
T Consensus 406 i~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 406 MEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp HHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred ccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 9764 4566776665533 3322 46788888864
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.36 E-value=0.24 Score=48.61 Aligned_cols=148 Identities=13% Similarity=0.146 Sum_probs=96.0
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee-------
Q psy3640 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL------- 487 (616)
Q Consensus 419 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------- 487 (616)
..++..++.+- ++.||.-++......+.+... -..|..+..+|+|++||..+.. .|.|-.+..+...
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence 44555565554 367887787754444455433 2368889999999999998654 7888887632110
Q ss_pred ----eeEEeccC---CCeeeEEEEEEcCC---CCEEEEEeCCCcEEEEecCCceEEeEEee---------ccccCEEEEE
Q psy3640 488 ----LQTFYGHS---NEVSKVLDIAFDYS---GSKLATASSDQTAKLWTVGGAVELLQTFY---------GHSNEVSKVS 548 (616)
Q Consensus 488 ----~~~~~~~~---~~~~~i~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~ 548 (616)
...+.-.. .....|..+.|+|- +..|++-..|+.|++||+.........+. .....|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 11111111 12456899999995 56899999999999999975221111221 2236789999
Q ss_pred EecCCCEEEEEE--CCCcEEEe
Q psy3640 549 FHPTGKLVLSGS--QDTTCRLW 568 (616)
Q Consensus 549 ~spdg~~l~s~s--~dg~i~iw 568 (616)
|.+++-.|...+ ..|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887666644 77877643
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.30 E-value=0.78 Score=43.43 Aligned_cols=209 Identities=8% Similarity=0.036 Sum_probs=111.5
Q ss_pred CCEEEEEE--CCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeE
Q psy3640 283 GDKILTGS--FDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD--------------HTARIFNTNSGQEMH 346 (616)
Q Consensus 283 ~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~ 346 (616)
+..+.... .++.|...+.......+.... .+--+++++..|+-.... ..|+..++..++...
T Consensus 25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~ 102 (302)
T 3s25_A 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV 102 (302)
T ss_dssp TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE
T ss_pred CCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE
Confidence 45555443 244555555544332222221 123467888888766543 357777777654332
Q ss_pred EeecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640 347 TLKAHTGPVISLQFSSDRNMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 347 ~~~~~~~~v~~l~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 424 (616)
+.. .. +..|++++++|+-.. .++.-.||.+.. .+.....+..+.. .+++++++.
T Consensus 103 -l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~---------------dGs~~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 103 -LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRI---------------DGEEKKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp -EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEET---------------TSCCCEEEESSCC----CCSEEETTE
T ss_pred -eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEEC---------------CCCCeEEEeCCCc----eEeeEECCE
Confidence 221 12 236677888888776 344445554432 2222233333322 345677887
Q ss_pred EEEEeC-CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEEeccCCCeeeE
Q psy3640 425 IASSSL-DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTFYGHSNEVSKV 501 (616)
Q Consensus 425 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i 501 (616)
|.-.+. ...|...++..+.....+. +... ..++|++.+|+-....+ .|..-++.+... ..+... .+
T Consensus 159 iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~~-----~~ 227 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTEA-----NI 227 (302)
T ss_dssp EEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSCS-----CE
T ss_pred EEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeCC-----Cc
Confidence 776665 5778888887765443332 2222 34568888888765443 455555554322 222111 11
Q ss_pred EEEEEcCCCCEEEEEeC--CCcEEEEecCCc
Q psy3640 502 LDIAFDYSGSKLATASS--DQTAKLWTVGGA 530 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~ 530 (616)
..++|++.+|..+.. .+.|..-++...
T Consensus 228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp --EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred --ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 347888888876543 356666666653
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.24 E-value=0.63 Score=47.01 Aligned_cols=109 Identities=8% Similarity=0.057 Sum_probs=61.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeEEecc---CCCeeeEEEEEEcCC---CCEEEEEeC------
Q psy3640 452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE-LLQTFYGH---SNEVSKVLDIAFDYS---GSKLATASS------ 518 (616)
Q Consensus 452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~~i~~~~~s~~---~~~l~~~~~------ 518 (616)
-.....|+|.|+|+++++-...+.|.+++..++.. ....+... ......+..++++|+ +..|.+...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34567999999998776654445688887643322 22222111 112345778999996 555554442
Q ss_pred -------CCcEEEEecCCc------eE-EeEEee-ccccCEEEEEEecCCCEEEEEE
Q psy3640 519 -------DQTAKLWTVGGA------VE-LLQTFY-GHSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 519 -------dg~i~vwd~~~~------~~-~~~~~~-~h~~~v~~l~~spdg~~l~s~s 560 (616)
...|.-++.... .+ ++..+. ........|+|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 234555554321 11 121122 1223578999999998777644
No 336
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.088 Score=50.59 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=105.0
Q ss_pred CCEEEEEECCCcEEEEECCCCcEEEEEecc-CCcEEEEEEc---CCCCEEEE--ECCCcEEEEeCCCCceEEEeeC----
Q psy3640 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFS---EPYGCLTG--SYDRTCKLWDIKSGHEICTYRG---- 268 (616)
Q Consensus 199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h-~~~I~~l~fs---~~~~lls~--s~d~~I~iwd~~~~~~~~~~~~---- 268 (616)
+..++.++.||.|.-.|.++|+.+-++... ..++....-. .++..+.+ +.||.+..++..+|.....+..
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 457899999999999999999999988754 1222221100 13344444 5899999999998866554431
Q ss_pred CCCcEEE---EEE-e---CCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--------eEEEc-------CCCCEEE
Q psy3640 269 HQNVVYA---VAF-S---EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--------EVTFS-------PDQSTFC 326 (616)
Q Consensus 269 h~~~V~~---l~~-~---~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~-------~~~~~l~ 326 (616)
...++.. ... . -..+..+++|+.+|.+...|+.+|+.+..+..... ..+.. ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 2222221 000 0 01467889999999999999999999988864321 11111 1235677
Q ss_pred EEeCCCcEEEEECCCCceeEEee-----cCCcC--EE-EEEEcCCCCEEEEEECCCcEEEEecc
Q psy3640 327 SCSMDHTARIFNTNSGQEMHTLK-----AHTGP--VI-SLQFSSDRNMLITGSFDSSIVVWDIQ 382 (616)
Q Consensus 327 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~--v~-~l~~~~~~~~l~~g~~dg~i~iwd~~ 382 (616)
.+..+..+.+.+ ++|+ ...+. ..... +. ....+.++.+ ++++.||.|.-+|..
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 777666666666 4453 22211 00000 00 0000123444 457778888888865
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.13 E-value=0.91 Score=42.96 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=90.5
Q ss_pred EEEccCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy3640 416 CLFNFSNSMIASSSLD--------------GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS--SDQTANLW 479 (616)
Q Consensus 416 ~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iw 479 (616)
--+++++..|+-.... ..|+..++...+.. .+.. .. ...++++++.|+-.. .++.-.||
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457788877766543 35777777665432 2221 12 236677888888765 34444444
Q ss_pred --ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640 480 --TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV 556 (616)
Q Consensus 480 --d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l 556 (616)
++.+. ....+..+.. .+++++++.|+-.+. ...|.+.++.+.... .... +... ..++|++.+|
T Consensus 133 ~~~~dGs--~~~~lt~~~~-------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~---~~~~-~~~~P~g~~i 198 (302)
T 3s25_A 133 RIRIDGE--EKKKIKNHYL-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYD---CNCY-KPVVLDDTNV 198 (302)
T ss_dssp EEETTSC--CCEEEESSCC-------CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEEC---SCEE-EEEEEETTEE
T ss_pred EEECCCC--CeEEEeCCCc-------eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeC---CCcc-ceeeecCCEE
Confidence 44432 2222322221 345778888886665 678888888775332 2222 2222 3467999988
Q ss_pred EEEECC--CcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640 557 LSGSQD--TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 557 ~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~ 601 (616)
+-...+ ..|..-++..+. ...+.. ..+. .|+|++++|.-+
T Consensus 199 y~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~--~~~~~g~~Iy~~ 240 (302)
T 3s25_A 199 YYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE--HYNVYGSLIFYQ 240 (302)
T ss_dssp EEEEGGGTTEEEEECSSSCC-CEECSC--SCEE--EEEEETTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc--eEEECCCEEEEE
Confidence 876544 356666665443 333432 2232 367777777654
No 338
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.09 E-value=0.12 Score=50.39 Aligned_cols=145 Identities=8% Similarity=-0.068 Sum_probs=66.3
Q ss_pred CcEEEEeCCCCeEEEEeecCC-CCE-EEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEE
Q psy3640 432 GTAKLWDVRTMCCFYTLKNHE-DEV-LDIAFDYSGSKLATASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLD 503 (616)
Q Consensus 432 g~i~iwd~~~~~~~~~~~~~~-~~v-~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~ 503 (616)
..+.+||..+.+-...-.... ..- .+++.. ++..++.|+. ...+..|++...............+......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 468999998765433221111 111 223322 4556666543 2456777763222222222211111111111
Q ss_pred EEEcCCCCEEEEEeCC----------------------CcEEEEecCCc-eEEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640 504 IAFDYSGSKLATASSD----------------------QTAKLWTVGGA-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 504 ~~~s~~~~~l~~~~~d----------------------g~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s 560 (616)
.+...++..++.|+.+ ..+.+||+.+. ...+..+......-. +...++++++.|+
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG 324 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGG 324 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEee
Confidence 1223356777777632 25778888653 222322222222222 2334778888888
Q ss_pred CCC------cEEEecCCcCeeeeEe
Q psy3640 561 QDT------TCRLWSTESGECIQVL 579 (616)
Q Consensus 561 ~dg------~i~iwd~~~~~~~~~~ 579 (616)
.++ .+.++++++++.+...
T Consensus 325 ~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 325 ETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred eCCCCCEeeeEEEEEEcCcEeEeee
Confidence 653 3555677777766443
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.00 E-value=0.43 Score=45.63 Aligned_cols=189 Identities=8% Similarity=0.018 Sum_probs=92.4
Q ss_pred EEccCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-------CcE
Q psy3640 417 LFNFSNSMIASSSL----DG-------TAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-------QTA 476 (616)
Q Consensus 417 ~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-------g~i 476 (616)
+...++.+++.|+. ++ .+..||..+.+-...-. ..........+ ++..++.|+.+ ..+
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 129 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV 129 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence 34456778888873 11 27788988765433211 11111122222 56666676653 246
Q ss_pred EEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC------CCcEEEEecCCce-EEeEEeeccccCEEEEEE
Q psy3640 477 NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS------DQTAKLWTVGGAV-ELLQTFYGHSNEVSKVSF 549 (616)
Q Consensus 477 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~ 549 (616)
.+||..+.. .............- +++ ..++..++.|+. ...+.+||..+.. ..+..+.........+.
T Consensus 130 ~~yd~~~~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 204 (318)
T 2woz_A 130 LCYDPVAAK--WSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI- 204 (318)
T ss_dssp EEEETTTTE--EEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred EEEeCCCCC--EeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-
Confidence 777876532 11111111111111 112 246677777764 2458899987642 22211111111112222
Q ss_pred ecCCCEEEEEECC-----CcEEEecCCcCee--eeEeccCcccEEEEEEeeCCCEEEEeeCC--------------CcEE
Q psy3640 550 HPTGKLVLSGSQD-----TTCRLWSTESGEC--IQVLKAHEDDVFSCGFNYNGDTIITASKD--------------NTCC 608 (616)
Q Consensus 550 spdg~~l~s~s~d-----g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~t~s~D--------------g~i~ 608 (616)
-++++++.|+.+ ..+.+||+.+.+- +..+........ +...++++++.|+.+ ..+.
T Consensus 205 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~ 281 (318)
T 2woz_A 205 -HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS--LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281 (318)
T ss_dssp -ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE--EEEETTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred -ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE--EEEECCEEEEECCeeccCCCCceeccceeeeEE
Confidence 366777777654 3477888876542 222222211111 223467788887754 3577
Q ss_pred EcccCCC
Q psy3640 609 IWRSMNR 615 (616)
Q Consensus 609 vW~~~~~ 615 (616)
+||+.++
T Consensus 282 ~yd~~~~ 288 (318)
T 2woz_A 282 KYEDDKK 288 (318)
T ss_dssp EEETTTT
T ss_pred EEeCCCC
Confidence 7887653
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.80 E-value=0.41 Score=45.72 Aligned_cols=128 Identities=5% Similarity=0.006 Sum_probs=63.9
Q ss_pred cEEEEeCCCCceEE-EeeC-CCCcEEEEEEeCCCCCEEEEEEC----CC-------eEEEEeCCCcceeEEe--eece-e
Q psy3640 251 TCKLWDIKSGHEIC-TYRG-HQNVVYAVAFSEPYGDKILTGSF----DK-------TLKLWASAKEECIQTY--RGHS-A 314 (616)
Q Consensus 251 ~I~iwd~~~~~~~~-~~~~-h~~~V~~l~~~~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~--~~~~-~ 314 (616)
.+..||..+++-.. .+.. ....-.+++ . .++..++.|+. ++ .+..+|..+.+....- .... .
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIV-T-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEE-C-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEE-E-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 47888988877443 1221 112222332 2 56778888873 12 1677888776543221 1111 1
Q ss_pred eEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEEeecC--CcCEEEEEEcCCCCEEEEEEC------CCcEEEE
Q psy3640 315 EVTFSPDQSTFCSCSMD-------HTARIFNTNSGQEMHTLKAH--TGPVISLQFSSDRNMLITGSF------DSSIVVW 379 (616)
Q Consensus 315 ~v~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~g~~------dg~i~iw 379 (616)
..+..-++..++.|+.+ ..+.+||..+.+-...-... ...- +++. .++.+++.|+. -..+.+|
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 180 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIY 180 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence 11222256677777653 24788888876533221111 1111 1222 35666676654 2357888
Q ss_pred ecc
Q psy3640 380 DIQ 382 (616)
Q Consensus 380 d~~ 382 (616)
|+.
T Consensus 181 d~~ 183 (318)
T 2woz_A 181 NPK 183 (318)
T ss_dssp ETT
T ss_pred cCC
Confidence 875
No 341
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.62 E-value=0.37 Score=42.60 Aligned_cols=151 Identities=10% Similarity=-0.036 Sum_probs=79.6
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG 432 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 432 (616)
..+..++|+|+|.+.++ .+|.+.-.+.... ...... ......=..--....++.|.+++.+.++ .||
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~--~~~~W~-------~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG 107 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTH--DNDNWM-------GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKD 107 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCS--TTCCHH-------HHCEEEECSCGGGCSEEEECTTSCEEEE--ETT
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCC--Cccccc-------ccccEecccccccceEEEECCCCCEEEe--CCC
Confidence 36779999999987766 5776555543210 000000 0000110101112578899999988888 569
Q ss_pred cEEEEeCCCCeEE------EEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee----eeeEEeccCCCeeeE
Q psy3640 433 TAKLWDVRTMCCF------YTL-KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE----LLQTFYGHSNEVSKV 501 (616)
Q Consensus 433 ~i~iwd~~~~~~~------~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~i 501 (616)
.|+-++-.+.... ..+ ..--..+..+.+.|+|.+.++. |+.+.-........ ......... .-...
T Consensus 108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~y 184 (236)
T 1tl2_A 108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG-GWDTF 184 (236)
T ss_dssp EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGE
T ss_pred EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC-CcceE
Confidence 9988876431110 111 1112468999999999887777 77654332221100 001111100 11123
Q ss_pred EEEEEcCCCCEEEEEeCCCc
Q psy3640 502 LDIAFDYSGSKLATASSDQT 521 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~~dg~ 521 (616)
..+.|.+++...++. ++.
T Consensus 185 r~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 185 KFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp EEEEECTTSCEEEEE--TTE
T ss_pred EEEEECCCCcEEEEe--CCe
Confidence 346688888877776 553
No 342
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.51 E-value=0.51 Score=41.76 Aligned_cols=176 Identities=7% Similarity=-0.068 Sum_probs=94.1
Q ss_pred CCCEEEEEECCCeEEEEeCCCcc------eeEEee----eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCce------e
Q psy3640 282 YGDKILTGSFDKTLKLWASAKEE------CIQTYR----GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQE------M 345 (616)
Q Consensus 282 ~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~----~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~ 345 (616)
...+|+....| +++.=...++. ...++. .....++|+|++.+.++ .+|.++-.+..+... -
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34556666666 55554444333 111111 13346899998887776 678777766644211 1
Q ss_pred EEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640 346 HTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424 (616)
Q Consensus 346 ~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 424 (616)
..+- .--....++.|.|+|.+.++ .||.|.-++....... ... ......-...=..+..+.+.|+|.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~-~Wl--------~~a~~vg~~gw~~~~~lff~p~G~L 148 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD-NWI--------ARATEVGSGGWSGFKFLFFHPNGYL 148 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHH--------HHSEEEECSSGGGEEEEEECTTSCE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC-cee--------ccccEeccCCCCceEEEEECCCceE
Confidence 1110 00111478999999988777 4698887764311000 000 0011111222356788999999988
Q ss_pred EEEEeCCCcEEEEeCCCCe------EEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3640 425 IASSSLDGTAKLWDVRTMC------CFYTLK-NHEDEVLDIAFDYSGSKLATASSDQT 475 (616)
Q Consensus 425 l~~~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~ 475 (616)
.++. |+.++-....+.. ....+- ..-..-..+.|.+++.+.++. +|.
T Consensus 149 yav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 149 YAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp EEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred EEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 8877 7776544333211 011111 222234557788888777766 663
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.33 E-value=2.2 Score=41.12 Aligned_cols=233 Identities=11% Similarity=0.058 Sum_probs=123.7
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE----EecCccceeEEEEccC---CC
Q psy3640 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI----LTGHSQEISNCLFNFS---NS 423 (616)
Q Consensus 351 ~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~---~~ 423 (616)
.-.....|+|.|+|.++++--..|.|++++.... ....+.. ..........++++|+ +.
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g--------------~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g 95 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG--------------RKTELGEVPGVSPSGEGGLLGIALSPDYASDH 95 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC--------------CEEEEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC--------------cEeeecccCceeecCCCCceeeEeccccccCC
Confidence 3445689999999987766655899998875311 0011111 1223456778999985 34
Q ss_pred EEEEE-e--CCCcEEEEeCCC----------CeEEE-Eeec-CCCCEEEEEEcCCCCEEEEEeC-------------CCc
Q psy3640 424 MIASS-S--LDGTAKLWDVRT----------MCCFY-TLKN-HEDEVLDIAFDYSGSKLATASS-------------DQT 475 (616)
Q Consensus 424 ~l~~~-~--~dg~i~iwd~~~----------~~~~~-~~~~-~~~~v~~l~~~~~~~~l~~~~~-------------dg~ 475 (616)
.|... + .++.|.-|.... .+.+. .+.. .......|+|.|+|.+.++.+. .|.
T Consensus 96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~ 175 (347)
T 3das_A 96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK 175 (347)
T ss_dssp EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence 44433 2 345566665543 12221 2221 1123456999999987777543 244
Q ss_pred EEEEecCCcee-------eeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCc-----------------
Q psy3640 476 ANLWTVGGAVE-------LLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGA----------------- 530 (616)
Q Consensus 476 i~iwd~~~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~----------------- 530 (616)
|.-.+...... ......++. ....++|+|+|.+.++-. .++.-.+--+..+
T Consensus 176 IlRi~~dG~ip~~nPf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~ 251 (347)
T 3das_A 176 ILRMTPDGEPAPGNPFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF 251 (347)
T ss_dssp EEEECTTSSBCTTCSSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred EEEEeCCCCccCCCCCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence 44445443210 001111222 234689999877655432 2222222222111
Q ss_pred eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee----eeEeccCcccEEEEEEeeCCCEEEEee
Q psy3640 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC----IQVLKAHEDDVFSCGFNYNGDTIITAS 602 (616)
Q Consensus 531 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~t~s 602 (616)
...+..+..+......++|. +|..+...-..+.|....++.+.. ...+.+...++.+++..|||.++++.+
T Consensus 252 ~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 252 HDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp CCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 01122222222356677776 455666555566666666654432 233444457899999999998766644
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.97 E-value=1.2 Score=41.58 Aligned_cols=239 Identities=13% Similarity=0.038 Sum_probs=120.0
Q ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640 189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG 268 (616)
Q Consensus 189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~ 268 (616)
.|..++.... ..++. . ||.|..|-......+..-......|..++-.....++. . ||.|..|-....-.+..-..
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~ 99 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAE 99 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence 4666666442 22333 4 88888887654222111111233567777665554545 4 89999997654222111111
Q ss_pred CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-EeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT 347 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 347 (616)
-...|..++.. ..+.+.-. ||.|..|-......+. ..........+.....+.+.-. +|.++.|-......+..
T Consensus 100 ~~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~ 174 (282)
T 3qhy_B 100 ARSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV 174 (282)
T ss_dssp GSSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred cCCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC
Confidence 13468888876 35555556 9999999755422111 1111111223333333444444 78888886654222111
Q ss_pred eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640 348 LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427 (616)
Q Consensus 348 ~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 427 (616)
-......|..++...+ ..++. .||.|..|-......... + ......|..++.......++
T Consensus 175 p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~------------p----~~~~~~v~~i~~G~~h~~al- 234 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTV------------P----TEALSGVSAIASGEWYSLAL- 234 (282)
T ss_dssp CGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCC------------C----GGGGSSCCEEEECSSCEEEE-
T ss_pred ceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCC------------C----cccCCCceEEEcCCCEEEEE-
Confidence 1112356777776543 23444 499999997543211110 0 01122455555443333333
Q ss_pred EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463 (616)
Q Consensus 428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~ 463 (616)
. ||.+..|-.....++. ....|.+++....
T Consensus 235 -~-~g~v~~wG~n~~gq~~----v~~~v~~iaaG~~ 264 (282)
T 3qhy_B 235 -K-NGKVIAWGSSRTAPSS----VQSGVSSIEAGPN 264 (282)
T ss_dssp -E-TTEEEEESTTCCCCGG----GSSCEEEEEECSS
T ss_pred -E-CCEEEEecCCCCcccc----CCCCcEEEEECcC
Confidence 3 8999999765432221 1235666655443
No 345
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.88 E-value=0.73 Score=44.78 Aligned_cols=189 Identities=5% Similarity=-0.031 Sum_probs=89.0
Q ss_pred CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeecC-CCC-EEEEEEcCCCCEEEEEeCC---------------
Q psy3640 421 SNSMIASSSL-D---------GTAKLWDVRTMCCFYTLKNH-EDE-VLDIAFDYSGSKLATASSD--------------- 473 (616)
Q Consensus 421 ~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~-v~~l~~~~~~~~l~~~~~d--------------- 473 (616)
++.+++.|+. + ..+.+||..+.+-...-... ... -.+++. .+++.++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~ 143 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAG 143 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcC
Confidence 5667777765 2 36889999887543322111 111 122222 466777777754
Q ss_pred ------------------------CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC------CCcEE
Q psy3640 474 ------------------------QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS------DQTAK 523 (616)
Q Consensus 474 ------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~ 523 (616)
..+.+||..+..=. ...........-.+++. -++++++.|+. ...+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~ 220 (357)
T 2uvk_A 144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWS--YAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVF 220 (357)
T ss_dssp TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEE--EEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEE
T ss_pred CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEE--ECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceE
Confidence 46888888764211 11111111011011222 25666666653 34577
Q ss_pred EEecCCceEEeEEeecc---ccCEEEEEEecCCCEEEEEECC----------------------CcEEEecCCcCe--ee
Q psy3640 524 LWTVGGAVELLQTFYGH---SNEVSKVSFHPTGKLVLSGSQD----------------------TTCRLWSTESGE--CI 576 (616)
Q Consensus 524 vwd~~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~s~s~d----------------------g~i~iwd~~~~~--~~ 576 (616)
.||++........+... .......+...++++++.|+.+ ..+.+||+.+.+ .+
T Consensus 221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~ 300 (357)
T 2uvk_A 221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS 300 (357)
T ss_dssp EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence 78762211222222111 1111222233466777777632 247788887653 33
Q ss_pred eEeccCcccEEEEEEeeCCCEEEEeeCCC------cEEEcccCCC
Q psy3640 577 QVLKAHEDDVFSCGFNYNGDTIITASKDN------TCCIWRSMNR 615 (616)
Q Consensus 577 ~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg------~i~vW~~~~~ 615 (616)
..+...... ..+...++++++.|+.++ .|.+++++++
T Consensus 301 ~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~ 343 (357)
T 2uvk_A 301 GELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN 343 (357)
T ss_dssp EECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred CCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence 333322222 222345788888888653 2444465543
No 346
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.47 E-value=4.6 Score=40.65 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=61.3
Q ss_pred CCcEEEEEEcCCCCEEEEECCC-cEEEEeCCCCceEE--EeeC------CCCcEEEEEEeCC---CCCEEEEEEC-----
Q psy3640 229 QNVVYAVAFSEPYGCLTGSYDR-TCKLWDIKSGHEIC--TYRG------HQNVVYAVAFSEP---YGDKILTGSF----- 291 (616)
Q Consensus 229 ~~~I~~l~fs~~~~lls~s~d~-~I~iwd~~~~~~~~--~~~~------h~~~V~~l~~~~~---~~~~l~s~s~----- 291 (616)
-.....|+|.|+++++++...+ .|++++..+++... .+.. .......|+|+|. ++.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999998888876 69999876665422 2221 2456789999932 4444444432
Q ss_pred -------CCeEEEEeCCCc-------ceeE-Eee---ec-eeeEEEcCCCCEEEEEeC
Q psy3640 292 -------DKTLKLWASAKE-------ECIQ-TYR---GH-SAEVTFSPDQSTFCSCSM 330 (616)
Q Consensus 292 -------dg~i~iwd~~~~-------~~~~-~~~---~~-~~~v~~~~~~~~l~~~~~ 330 (616)
...|.-++...+ +.+. .+. .| ...++|.|++.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 134555554321 1111 121 12 356799999987776553
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.15 E-value=2 Score=46.13 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=81.1
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeEEEEeecCCC-CEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEE
Q psy3640 421 SNSMIASSSLDG------TAKLWDVRTMCCFYTLKNHED-EVLDIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTF 491 (616)
Q Consensus 421 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 491 (616)
++.+++.|+.++ .+.+||..+.+-...-..... .-.+++.-.++..++.|+.++ .+.+||..+.. ....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence 677788877543 578899888643322111111 112233324777888877654 68889887642 1111
Q ss_pred ec---cCCCeeeEEEEEEcCC-CCEEEEEeC--C-----CcEEEEecCCce-------EEeEEee-ccccCEEEEEEecC
Q psy3640 492 YG---HSNEVSKVLDIAFDYS-GSKLATASS--D-----QTAKLWTVGGAV-------ELLQTFY-GHSNEVSKVSFHPT 552 (616)
Q Consensus 492 ~~---~~~~~~~i~~~~~s~~-~~~l~~~~~--d-----g~i~vwd~~~~~-------~~~~~~~-~h~~~v~~l~~spd 552 (616)
.. ..........+.+..+ +..++.|+. + +.+.+||+.+.. ..+.... ...... +++...+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC
Confidence 11 1111111223455555 667777765 2 458899987653 2222211 111112 2233344
Q ss_pred CCEEEEEEC--------CCcEEEecCCcCee
Q psy3640 553 GKLVLSGSQ--------DTTCRLWSTESGEC 575 (616)
Q Consensus 553 g~~l~s~s~--------dg~i~iwd~~~~~~ 575 (616)
+++++.|+. ...+.+||+.+.+-
T Consensus 608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp TEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred CEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 777788774 34589999987654
No 348
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.83 E-value=2 Score=40.06 Aligned_cols=221 Identities=14% Similarity=0.088 Sum_probs=107.9
Q ss_pred cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-
Q psy3640 231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY- 309 (616)
Q Consensus 231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 309 (616)
.|..++-.....++. . ||.|..|-....-.+..-......|..++.. ..+.+.-. ||.|..|-......+..-
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G---~~hs~~l~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG---NYHSLALK-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC---SSEEEEEE-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC---CCEEEEEE-CCEEEEeeCCCCCCCCCCc
Confidence 466666554433334 4 8999999754432211111123357777764 23333335 899999975532111100
Q ss_pred eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcc
Q psy3640 310 RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRN 389 (616)
Q Consensus 310 ~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~ 389 (616)
........+.....+.+.-. +|.|+.|-....-.+-........|..++...+ ..+.-. ||.|..|-........
T Consensus 99 ~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg- 173 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT- 173 (282)
T ss_dssp GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-
T ss_pred ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-
Confidence 00111223333344455555 888999976542211111123346777766433 222234 7999999765321110
Q ss_pred cccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEE
Q psy3640 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469 (616)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~ 469 (616)
.+ ......|..++...... ++. .+|.++.|-....-.+-.-......|..++..... .++.
T Consensus 174 -----------~p----~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al 234 (282)
T 3qhy_B 174 -----------VP----AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL 234 (282)
T ss_dssp -----------CC----GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE
T ss_pred -----------Cc----eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE
Confidence 00 00123455554433322 233 48889998654321111111122456677665433 3333
Q ss_pred EeCCCcEEEEecCC
Q psy3640 470 ASSDQTANLWTVGG 483 (616)
Q Consensus 470 ~~~dg~i~iwd~~~ 483 (616)
. ||.+..|-...
T Consensus 235 -~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 235 -K-NGKVIAWGSSR 246 (282)
T ss_dssp -E-TTEEEEESTTC
T ss_pred -E-CCEEEEecCCC
Confidence 3 88999997654
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=91.38 E-value=5.3 Score=42.77 Aligned_cols=192 Identities=8% Similarity=0.017 Sum_probs=99.1
Q ss_pred cCCCEEEEEeCC----CcEEEEeCCCCeEEEEe-e------cCCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEec
Q psy3640 420 FSNSMIASSSLD----GTAKLWDVRTMCCFYTL-K------NHEDEVLDIAFDY-SGSKLATASSD------QTANLWTV 481 (616)
Q Consensus 420 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd~ 481 (616)
.++.+++.|+.+ ..+.+||..+.+-...- . .....-.+++..+ ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777653 45888998876543322 1 1111112233333 66777777643 34778887
Q ss_pred CCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceE-EeEE---eeccccCEEEEEEecC-CC
Q psy3640 482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGAVE-LLQT---FYGHSNEVSKVSFHPT-GK 554 (616)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~-~~~~---~~~h~~~v~~l~~spd-g~ 554 (616)
.+.. ............ -.+++.-.++..++.|+.++ .+.+||..+..= .+.. .........++.+..+ ++
T Consensus 476 ~t~~--W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTE--EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCc--EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence 6632 111111111111 11233334888888888655 689999876421 1111 1111122233555555 66
Q ss_pred EEEEEEC--C-----CcEEEecCCcCe--------eeeEec-cCcccEEEEEEeeCCCEEEEeeCC--------CcEEEc
Q psy3640 555 LVLSGSQ--D-----TTCRLWSTESGE--------CIQVLK-AHEDDVFSCGFNYNGDTIITASKD--------NTCCIW 610 (616)
Q Consensus 555 ~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~V~~l~~s~~~~~l~t~s~D--------g~i~vW 610 (616)
+++.|+. + ..+.+||+.+.. .+.... .....- +++...++.+++.|+.+ ..+.+|
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 7777765 2 358899988776 111111 111111 22333347788888753 458888
Q ss_pred ccCCC
Q psy3640 611 RSMNR 615 (616)
Q Consensus 611 ~~~~~ 615 (616)
|+.+.
T Consensus 632 d~~t~ 636 (695)
T 2zwa_A 632 DPLSE 636 (695)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 87653
No 350
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.44 E-value=24 Score=36.05 Aligned_cols=266 Identities=9% Similarity=-0.001 Sum_probs=145.7
Q ss_pred EEEEECCCcEEEEECCCCcEEEEEeccC-------------------------CcE--EEEEEc---CCCCEE-EEE-CC
Q psy3640 202 CLTGSYDRTCKLWDIKSGHEICTYRGHQ-------------------------NVV--YAVAFS---EPYGCL-TGS-YD 249 (616)
Q Consensus 202 lasgs~dg~i~iwd~~~~~~~~~~~~h~-------------------------~~I--~~l~fs---~~~~ll-s~s-~d 249 (616)
+.+|+..|.|+|+-+.+++.++.+.-.+ +.. ..+.+. .||+++ .-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5688899999999999999988774110 000 122232 245554 222 46
Q ss_pred CcEEEEeCCCCceEEEee-CCCCcEEEEEEeC-CCCCEEEEEECC-------CeE---------EE---EeCCCcceeEE
Q psy3640 250 RTCKLWDIKSGHEICTYR-GHQNVVYAVAFSE-PYGDKILTGSFD-------KTL---------KL---WASAKEECIQT 308 (616)
Q Consensus 250 ~~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~-~~~~~l~s~s~d-------g~i---------~i---wd~~~~~~~~~ 308 (616)
..|...+++..+.-..+. .....+..+.|.. |+..+++.++.. |.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 678888888887665554 3566788888873 677788877652 221 11 12222221111
Q ss_pred e--eeceeeEEEcCCCCEEEEEeCCC---------------cEEEE-------------------------ECCC----C
Q psy3640 309 Y--RGHSAEVTFSPDQSTFCSCSMDH---------------TARIF-------------------------NTNS----G 342 (616)
Q Consensus 309 ~--~~~~~~v~~~~~~~~l~~~~~dg---------------~i~i~-------------------------d~~~----~ 342 (616)
+ .+....+...+++.+.++.+.+. .+.++ |.+. +
T Consensus 233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~ 312 (638)
T 3sbq_A 233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD 312 (638)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence 1 12222234566667666655321 13333 3332 1
Q ss_pred ceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC
Q psy3640 343 QEMHTLKAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS 421 (616)
Q Consensus 343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 421 (616)
..+..+-.-......+..+|||+++++++. +.++.++|++........ .... ....+.....-.-.....+|.++
T Consensus 313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~---k~~~-~~~~~~ae~e~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG---KLAD-PRDVIVGEPELGLGPLHTTFDGR 388 (638)
T ss_dssp CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT---CCSC-GGGGEEECCBCCSCEEEEEECSS
T ss_pred CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc---cccC-cccceEeeccCCCcccEEEECCC
Confidence 111111112233467889999998887664 789999998742110000 0000 11111111122334456788888
Q ss_pred CCEEEEEeCCCcEEEEeCCCC----------eEEEEeecCCCCEEEEE-----EcCCCCEEEEEe
Q psy3640 422 NSMIASSSLDGTAKLWDVRTM----------CCFYTLKNHEDEVLDIA-----FDYSGSKLATAS 471 (616)
Q Consensus 422 ~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~-----~~~~~~~l~~~~ 471 (616)
|....+---|..|..|++... ..+..+.-|-.+-.-.+ -.++|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 855556668999999998653 44555554543322221 257899999874
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.94 E-value=24 Score=34.40 Aligned_cols=171 Identities=8% Similarity=-0.031 Sum_probs=87.3
Q ss_pred CEEEEEECCCcEEEEECCC-CcEEEEE--eccCCcEEEEEEcC--CCCEEEEECCC----cEEEEeCCCCceEEEeeC--
Q psy3640 200 TRCLTGSYDRTCKLWDIKS-GHEICTY--RGHQNVVYAVAFSE--PYGCLTGSYDR----TCKLWDIKSGHEICTYRG-- 268 (616)
Q Consensus 200 ~~lasgs~dg~i~iwd~~~-~~~~~~~--~~h~~~I~~l~fs~--~~~lls~s~d~----~I~iwd~~~~~~~~~~~~-- 268 (616)
..|.+|+..| +.+++... +..-..+ ......|.+|++.| ++.+.+++..+ .|...+ +.++.-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 4677788777 55555432 3222222 12346799999998 66677666555 444332 23322122110
Q ss_pred ------------CCCcEEEEEEeCCC-CCEEEEEECCCeEEEEeCCCcceeEEee----------------------ece
Q psy3640 269 ------------HQNVVYAVAFSEPY-GDKILTGSFDKTLKLWASAKEECIQTYR----------------------GHS 313 (616)
Q Consensus 269 ------------h~~~V~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------~~~ 313 (616)
+...|.++++.+.+ .+.+..++..+.|...+-. ++.-..+. ...
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence 11358889998544 5666666666655544322 22111111 112
Q ss_pred eeEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCC-CCEEEEEECCC
Q psy3640 314 AEVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSD-RNMLITGSFDS 374 (616)
Q Consensus 314 ~~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~-~~~l~~g~~dg 374 (616)
..+.+.|. ...+.++..++.|...+ ..++.-..+... ...+.+++++|+ ...+.++...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 35677773 44555555444444332 223332222110 134889999885 46677776544
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.62 E-value=28 Score=34.90 Aligned_cols=116 Identities=11% Similarity=0.105 Sum_probs=60.1
Q ss_pred cCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEE--EecCccceeEEEEccC----CCEE
Q psy3640 353 GPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI--LTGHSQEISNCLFNFS----NSMI 425 (616)
Q Consensus 353 ~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~----~~~l 425 (616)
.....|+|.|+|. .++++...|.|++++...... ...... ....... ..........++++|+ +.+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~-----~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLD-----IHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEE-----CTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecC-----CcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 3457899999986 566667889999997431110 000000 0000000 0012345678899886 3333
Q ss_pred EEEeC--C----------CcEEEEeCCC----------CeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640 426 ASSSL--D----------GTAKLWDVRT----------MCCFYTLK--NHEDEVLDIAFDYSGSKLATASSDQ 474 (616)
Q Consensus 426 ~~~~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg 474 (616)
++-+. + ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 33221 1 1344454431 23333332 1223467899999998777766543
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.12 E-value=26 Score=34.09 Aligned_cols=300 Identities=9% Similarity=-0.045 Sum_probs=129.8
Q ss_pred CCCEEEEECCCcEEEEeCCC-CceEEEe--eCCCCcEEEEEEeCCCCCEEEEEECCC----eEEEEeCCCcceeEEee--
Q psy3640 240 PYGCLTGSYDRTCKLWDIKS-GHEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDK----TLKLWASAKEECIQTYR-- 310 (616)
Q Consensus 240 ~~~lls~s~d~~I~iwd~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~-- 310 (616)
++.+.+++..| +.+.+-.. ++.-..+ ......|.+|++.|.+...+..++..| .|...+ ..++.-..+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 34466777766 44444332 2221211 123467999999854455555555555 343332 2222211111
Q ss_pred ----e-----------ceeeEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeec-------------------CCcC
Q psy3640 311 ----G-----------HSAEVTFSPD--QSTFCSCSMDHTARIFNTNSGQEMHTLKA-------------------HTGP 354 (616)
Q Consensus 311 ----~-----------~~~~v~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~ 354 (616)
. +...+++.|. ...+.+++..+.|...+ ..++.-..+.. ....
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 0 1224567762 45666666555554442 22333222211 1235
Q ss_pred EEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEEEEEeCCC
Q psy3640 355 VISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMIASSSLDG 432 (616)
Q Consensus 355 v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg 432 (616)
+.+|.++|. ...++++..++.|...+-. ...-....... .....+.. .......+..+++.+. ...+.++...+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg--G~tW~~~~~~~-~~~~~p~~-~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSSGGVFESTDA--GTDWKPLNRGC-AANFLPDP-NVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEEECTTCTTCEEEEEETBEEEEESST--TSSCEECCTTC-CCTTSSSS-SSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eeEEEECCCCCCEEEEEECCCCEEEECCC--CCCceECCCCc-cccccCCC-ccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 788999873 4455555544444333211 00000000000 00000000 0000134777888875 35666666554
Q ss_pred cEEEEeCCCCeEEEEeec--CC---CCEEEEEEcCC-CCEEEEEeC-----------CCcEEEEecCCceeeeeEEec-c
Q psy3640 433 TAKLWDVRTMCCFYTLKN--HE---DEVLDIAFDYS-GSKLATASS-----------DQTANLWTVGGAVELLQTFYG-H 494 (616)
Q Consensus 433 ~i~iwd~~~~~~~~~~~~--~~---~~v~~l~~~~~-~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~-~ 494 (616)
|...+- .++.-..+.. .. ..+.+++++|. ...+.++.. ++...+|...+.......+.. .
T Consensus 255 -l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 255 -IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp -EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred -EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence 444432 2222222221 11 34677888863 344554432 333455555443222222211 1
Q ss_pred CCCe--e--eEEEEEEcCCC-CEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640 495 SNEV--S--KVLDIAFDYSG-SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH 550 (616)
Q Consensus 495 ~~~~--~--~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s 550 (616)
.... . -...++++|.. ..|++++.++.|..-.-. ......+..+-..+.+++|.
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~--G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASADE--GEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESST--TSBCEEEECSCSCEEEEEEE
T ss_pred CCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECCC--CCCceEcccCCCCeeEEEEe
Confidence 1100 0 01246777753 456666656655433221 12233333344557777664
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.96 E-value=41 Score=31.80 Aligned_cols=244 Identities=10% Similarity=0.040 Sum_probs=121.0
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEE-Ecc--CCCEEEE
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCL-FNF--SNSMIAS 427 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~-~~~--~~~~l~~ 427 (616)
..+..+........++.-+..|.++........... ....+.++..+. .....|..+. ... +...++.
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~-------r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~ 114 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS-------RTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVL 114 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC-------SSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCC-------ccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEE
Confidence 344444444455667777778877665543221110 000111111110 1223344433 332 5779999
Q ss_pred EeCCCcEEEEeCCC-------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC--CceeeeeE---Ee-cc
Q psy3640 428 SSLDGTAKLWDVRT-------MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG--GAVELLQT---FY-GH 494 (616)
Q Consensus 428 ~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~---~~-~~ 494 (616)
.+.+|.++...+.. +.....+.. .+.+..+........++..+..|.+..+... .-...-.. .. -.
T Consensus 115 ~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~ 193 (327)
T 3uc1_A 115 ATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMR 193 (327)
T ss_dssp EETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSC
T ss_pred EcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeec
Confidence 99999999887643 222222332 4556666555566788888999998888776 32111000 00 00
Q ss_pred CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEE
Q psy3640 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566 (616)
Q Consensus 495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~ 566 (616)
-.....|.++...+.+.+++..+..|.++.-.+..- ......+..-.+.+..+....+...++..+.+|.+.
T Consensus 194 L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~i 273 (327)
T 3uc1_A 194 FNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVI 273 (327)
T ss_dssp CCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEE
T ss_pred CCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEE
Confidence 112234666666667778999999999988776321 011111212134455555444455666677778777
Q ss_pred EecCCcCe---------eeeEeccCcccEEEEEEeeC-CCEEEEeeCCC
Q psy3640 567 LWSTESGE---------CIQVLKAHEDDVFSCGFNYN-GDTIITASKDN 605 (616)
Q Consensus 567 iwd~~~~~---------~~~~~~~h~~~V~~l~~s~~-~~~l~t~s~Dg 605 (616)
-++...-. .+..+. ..+.|.+++..+. ...+.+.+.+|
T Consensus 274 r~~~~~i~~~gR~a~GV~~i~l~-~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 274 RTAARQVRKAGRQTKGVRLMNLG-EGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp EEEGGGSCBCCTTSCCEECTTCC-TTCCEEEEEECC-------------
T ss_pred EEehhhccccCCCCCCeEeEecC-CCCEEEEEEEcCCCcceEEEEecCC
Confidence 77654321 111222 2345666665543 45566666655
No 355
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=78.24 E-value=75 Score=33.84 Aligned_cols=98 Identities=8% Similarity=0.010 Sum_probs=53.9
Q ss_pred CCCcEEEEecCCce------eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCc--EEEEecCCceEEeEE-e-eccc
Q psy3640 472 SDQTANLWTVGGAV------ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT--AKLWTVGGAVELLQT-F-YGHS 541 (616)
Q Consensus 472 ~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~-~-~~h~ 541 (616)
..+.|...++.+.. ...+.+..+.. ...+..+.+..+ .++++...++. +.++++.++.-.... + ....
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~ 395 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTA-NEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQ 395 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCT-TEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCST
T ss_pred CCCeEEEEECCcccccccccccceEEECCCC-CCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCC
Confidence 46778888886632 12222233322 345777888865 56677777764 566666543211111 1 1113
Q ss_pred cCEEEEEEecCCCEE-EEEEC---CCcEEEecCC
Q psy3640 542 NEVSKVSFHPTGKLV-LSGSQ---DTTCRLWSTE 571 (616)
Q Consensus 542 ~~v~~l~~spdg~~l-~s~s~---dg~i~iwd~~ 571 (616)
+.+.....++++..+ ++.+. -+.+..+|..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 396 NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 456666777776544 44333 3568888876
No 356
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=76.62 E-value=56 Score=31.51 Aligned_cols=238 Identities=7% Similarity=-0.044 Sum_probs=127.5
Q ss_pred cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC-cceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEe-
Q psy3640 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH-KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD- 438 (616)
Q Consensus 361 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd- 438 (616)
-|+...+++.+.+|.|+--.+..-...+. .. .....-......+..+........++..+..|.++-+.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r---------~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~ 74 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRR---------GGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV 74 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCC---------CCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhcc---------CCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEH
Confidence 46778999999999999876642110000 11 11112222344555555555666777778888776654
Q ss_pred --CC------CCeEEEEe-e-cCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCceee----eeEEeccCCCeeeE
Q psy3640 439 --VR------TMCCFYTL-K-NHEDEVLDIAFDY---SGSKLATASSDQTANLWTVGGAVEL----LQTFYGHSNEVSKV 501 (616)
Q Consensus 439 --~~------~~~~~~~~-~-~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~i 501 (616)
++ .|..+..+ . .....|.++..-. .+.+++.++..|.++...+..-... ...+. -.. ...+
T Consensus 75 ~eip~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~-L~~-~d~l 152 (370)
T 3l6v_A 75 HQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAIN-LDE-GDAL 152 (370)
T ss_dssp GGSCBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSC-CCT-TCCE
T ss_pred HHCcCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEE-eCC-CCEE
Confidence 32 23322211 1 1345566654432 4568999999999998876432110 00110 111 1234
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEec----------------------
Q psy3640 502 LDIAFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHP---------------------- 551 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~sp---------------------- 551 (616)
..+........++..+.+|.+..++...- ......+. ....|.++...+
T Consensus 153 v~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 231 (370)
T 3l6v_A 153 VGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTD 231 (370)
T ss_dssp EEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC--------------------
T ss_pred EEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccc
Confidence 44444456667888888888888876321 01111111 234455554443
Q ss_pred -------------CCCEEEEEECCCcEEEecCCcCee-------e--eEeccCcccEEEEEEeeCCCEEEEeeCCCcEEE
Q psy3640 552 -------------TGKLVLSGSQDTTCRLWSTESGEC-------I--QVLKAHEDDVFSCGFNYNGDTIITASKDNTCCI 609 (616)
Q Consensus 552 -------------dg~~l~s~s~dg~i~iwd~~~~~~-------~--~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~v 609 (616)
++..+++.+..|..+...+..-.. + ..+....+.+..+.+..+...++..+..|.+.-
T Consensus 232 g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR 311 (370)
T 3l6v_A 232 GAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVR 311 (370)
T ss_dssp ---------------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEE
T ss_pred cccccccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEE
Confidence 456889999999888876643211 1 122223345666555555556666666666544
Q ss_pred c
Q psy3640 610 W 610 (616)
Q Consensus 610 W 610 (616)
.
T Consensus 312 ~ 312 (370)
T 3l6v_A 312 T 312 (370)
T ss_dssp E
T ss_pred e
Confidence 3
No 357
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.29 E-value=85 Score=33.43 Aligned_cols=192 Identities=7% Similarity=0.060 Sum_probs=99.8
Q ss_pred ceEEEE-ECCCCCEEEEE-ECC----CcEEEEECCCCcEEE-EEecc-CC------cEEEEEEcCCCCEEEEE-------
Q psy3640 189 PLTNIT-FDKFGTRCLTG-SYD----RTCKLWDIKSGHEIC-TYRGH-QN------VVYAVAFSEPYGCLTGS------- 247 (616)
Q Consensus 189 ~i~~v~-~s~~g~~lasg-s~d----g~i~iwd~~~~~~~~-~~~~h-~~------~I~~l~fs~~~~lls~s------- 247 (616)
....+. ++|++++++.+ |.. ..++++|+++++.+. .+... +. ....++|.+++.++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 344455 89999988765 222 369999999997763 11100 00 11334776555554432
Q ss_pred ----CCCcEEEEeCCCCc--eEEEeeCCCCcEE-EEEEeCCCCC-----EEEEEECC---CeEEEEeCCC--cceeEEee
Q psy3640 248 ----YDRTCKLWDIKSGH--EICTYRGHQNVVY-AVAFSEPYGD-----KILTGSFD---KTLKLWASAK--EECIQTYR 310 (616)
Q Consensus 248 ----~d~~I~iwd~~~~~--~~~~~~~h~~~V~-~l~~~~~~~~-----~l~s~s~d---g~i~iwd~~~--~~~~~~~~ 310 (616)
....|+.|.+-+.. -...+.+....+. +...+ .+++ .+++.+.+ ..+.+.+... ++......
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKL-LSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEES-SCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEe-cCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 23568899887652 3334444333332 33333 4444 34444422 3455556543 32222211
Q ss_pred eceeeEEEcCCCCEEEEE----------eCCCcEEEEECCCCc-------eeEE-ee-cCCcCEEEEEEcCCCCEEEEEE
Q psy3640 311 GHSAEVTFSPDQSTFCSC----------SMDHTARIFNTNSGQ-------EMHT-LK-AHTGPVISLQFSSDRNMLITGS 371 (616)
Q Consensus 311 ~~~~~v~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-------~~~~-~~-~~~~~v~~l~~~~~~~~l~~g~ 371 (616)
.....+..+.++.+++.. ...+.|...|+.++. .... +. .....+..+.+..+ .++++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 289 PSDATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp CTTCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred CCcceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence 112222334444444422 246778889887632 2222 22 23346778888865 5777777
Q ss_pred CCCc--EEEEecc
Q psy3640 372 FDSS--IVVWDIQ 382 (616)
Q Consensus 372 ~dg~--i~iwd~~ 382 (616)
.++. +.++++.
T Consensus 368 ~~~~~~l~~~~~~ 380 (711)
T 4hvt_A 368 DNVVAKVVTFTLE 380 (711)
T ss_dssp ETTEEEEEEECEE
T ss_pred ECCEEEEEEEECC
Confidence 7775 4555543
No 358
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.61 E-value=53 Score=30.76 Aligned_cols=233 Identities=11% Similarity=0.030 Sum_probs=124.6
Q ss_pred CCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy3640 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR 440 (616)
Q Consensus 362 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~ 440 (616)
++...+++.+.+|.|+-..+..-..... .......+. .....+..+........++..+..|.++-+...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~---------~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~ 76 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT---------GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAY 76 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS---------SCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGG
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc---------CCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHH
Confidence 4567888999999999887653211100 000111111 123344445455556677788888887766542
Q ss_pred ---CC------eE---EEEeecCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCceee----eeEEeccCCCeeeE
Q psy3640 441 ---TM------CC---FYTLKNHEDEVLDIAFDY---SGSKLATASSDQTANLWTVGGAVEL----LQTFYGHSNEVSKV 501 (616)
Q Consensus 441 ---~~------~~---~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~i 501 (616)
.. .. .-.+. ....|.++..-+ +..+++..+..|.++...+..-... .... .-. ....+
T Consensus 77 ~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i-~L~-~~d~l 153 (312)
T 1suu_A 77 EIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVI-KLN-DKDFV 153 (312)
T ss_dssp GSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECB-CCC-TTCCE
T ss_pred HCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEE-ecC-CCCEE
Confidence 21 11 00111 234555554433 4678888999999998877442111 0111 111 12334
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640 502 LDIAFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 502 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~ 573 (616)
..+....+...++..+.+|.+..+....- ......+. ....|..+...+++..+++.+..|..+...+..-
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 44445455678889999999988887431 11111122 2345666665556667888899999888876432
Q ss_pred e---------eeeEec-cCcccEEEEEEeeCCCEEEEeeCCCcE
Q psy3640 574 E---------CIQVLK-AHEDDVFSCGFNYNGDTIITASKDNTC 607 (616)
Q Consensus 574 ~---------~~~~~~-~h~~~V~~l~~s~~~~~l~t~s~Dg~i 607 (616)
. .+..+. ...+.+.++....+...+...+..|.+
T Consensus 233 ~~~~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~ 276 (312)
T 1suu_A 233 SELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKA 276 (312)
T ss_dssp CBCCTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEE
T ss_pred cccCCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeE
Confidence 1 111222 223445444333455556666666644
No 359
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.57 E-value=57 Score=30.58 Aligned_cols=198 Identities=9% Similarity=0.051 Sum_probs=105.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce-------eEEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640 320 PDQSTFCSCSMDHTARIFNTNSGQE-------MHTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY 391 (616)
Q Consensus 320 ~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 391 (616)
++...+++.+.+|.|+-..+..-+. +..+. .....+..+........++..+..|.++-.....-......
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~- 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA- 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc-
Confidence 3455667777777777665432211 11111 11233444444445567778888898877766422111000
Q ss_pred cccccccCCcc---eEEEecCccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCC-------CeEEEEeecCCCCEEEE
Q psy3640 392 AESTYRASHKP---IHILTGHSQEISNCLFNF---SNSMIASSSLDGTAKLWDVRT-------MCCFYTLKNHEDEVLDI 458 (616)
Q Consensus 392 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l 458 (616)
..+.+ ...+. ....|..+...+ +...++..+..|.++...+.. |.....+.. .+.+..+
T Consensus 85 ------~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 85 ------SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSA 156 (312)
T ss_dssp ---------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEE
T ss_pred ------CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEE
Confidence 01111 00111 122333333222 456788889999998887632 322323333 4566666
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCceee------eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 459 AFDYSGSKLATASSDQTANLWTVGGAVEL------LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG 528 (616)
Q Consensus 459 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 528 (616)
........++..+.+|.+..+....-... ...+.- .....+..+..-.++..+++.+..|.....++.
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L--~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKL--KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCC--CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEe--CCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 66555677888999999998887542111 111111 112334555555566778899999998888874
No 360
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.21 E-value=59 Score=30.63 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=126.6
Q ss_pred CCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeC--
Q psy3640 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV-- 439 (616)
Q Consensus 362 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-- 439 (616)
|+...+++.+.+|.|+--.+..-.. .......+ .....+..+........++..+..|.++-+..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~------------~~~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~e 69 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAA------------SNGQDFAM-KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHE 69 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHH------------TTTCCCCC-CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhh------------cCcccccc-CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHH
Confidence 5667888999999999876542110 00000011 12334444444555667777778888666543
Q ss_pred -C------CCeEEEEe-e-cCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCceee-----eeEEeccCCCeeeEE
Q psy3640 440 -R------TMCCFYTL-K-NHEDEVLDIAFDY---SGSKLATASSDQTANLWTVGGAVEL-----LQTFYGHSNEVSKVL 502 (616)
Q Consensus 440 -~------~~~~~~~~-~-~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~i~ 502 (616)
+ .|.++..+ . .....|.++..-+ ++.+++.++.+|.++...+..-... ...+. -... ..+.
T Consensus 70 lp~~~r~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~-l~e~-d~lv 147 (323)
T 1wp5_A 70 LPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGIN-LKND-DQVV 147 (323)
T ss_dssp SCBCCTTSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSC-CCTT-CCEE
T ss_pred CcCCCCCCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEE-eCCC-CEEE
Confidence 2 23322211 1 1234566553333 2568999999999999887532111 11111 1111 3344
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEecCCC-EEEEEECCCcEEEecCCcC
Q psy3640 503 DIAFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHPTGK-LVLSGSQDTTCRLWSTESG 573 (616)
Q Consensus 503 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iwd~~~~ 573 (616)
.+........++..+.+|.+..+....- ......+. ....|.++...+++. .|++.+..|..+..++..-
T Consensus 148 ~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 148 DVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp EEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred EEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 4445456677888999999888876421 01111121 234566665544455 7888888888777665431
Q ss_pred -------eeeeE---eccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 574 -------ECIQV---LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 574 -------~~~~~---~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
+-+.. ++...+.+..+....+++.++..+..|.+...++
T Consensus 227 ~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 227 EKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp CCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred cccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEh
Confidence 11212 2222234654444444566777777777655554
No 361
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.22 E-value=57 Score=29.94 Aligned_cols=199 Identities=12% Similarity=0.006 Sum_probs=111.8
Q ss_pred cceeEEEEccCCCEEEEEeCCCcEEEE---eCCCCeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCcee
Q psy3640 411 QEISNCLFNFSNSMIASSSLDGTAKLW---DVRTMCCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAVE 486 (616)
Q Consensus 411 ~~i~~~~~~~~~~~l~~~~~dg~i~iw---d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 486 (616)
+.+..+........++.-+..|.++-- ++....... +-.....|..+.... +...++..+.+|.++...+..-..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~ 102 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEY 102 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhh
Confidence 334444444445556666777776653 332221111 222455677765421 467899999999999988754310
Q ss_pred eeeEEecc-CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEecCCCEEE
Q psy3640 487 LLQTFYGH-SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHPTGKLVL 557 (616)
Q Consensus 487 ~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~spdg~~l~ 557 (616)
...-.... -.....+..+........++..+..|.+..+....- ......+. ....|..+...+++..++
T Consensus 103 ~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll 181 (276)
T 3no0_A 103 KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLL 181 (276)
T ss_dssp CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEE
T ss_pred hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEE
Confidence 00000000 011123445555556778999999999888876321 11111122 235676666666677899
Q ss_pred EEECCCcEEEecCCcC-------eeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEE--ccc
Q psy3640 558 SGSQDTTCRLWSTESG-------ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCI--WRS 612 (616)
Q Consensus 558 s~s~dg~i~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~v--W~~ 612 (616)
..+..|.++...+..- +-+..+ ...+.+..+....+.+.++..+.+|.+.. +++
T Consensus 182 ~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~ 244 (276)
T 3no0_A 182 VITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQ 244 (276)
T ss_dssp EEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEG
T ss_pred EEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCH
Confidence 9999999888876432 222233 23455655544444456777788887766 654
No 362
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=73.20 E-value=61 Score=30.29 Aligned_cols=241 Identities=11% Similarity=0.028 Sum_probs=125.5
Q ss_pred CCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeC--
Q psy3640 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV-- 439 (616)
Q Consensus 362 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-- 439 (616)
|+...+++.+.+|.|+--.+..-...... ........+. ....+..+........++..+..|.++-+..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~-------~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~e 72 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRG-------GKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQ 72 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC----------------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGG
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccC-------CCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhH
Confidence 35567888899999987766421100000 0000000111 2234444444455667777778888666543
Q ss_pred -C------CCeEEEEe-e-cCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEecCCceeee-e--EEeccCCCeeeEEEE
Q psy3640 440 -R------TMCCFYTL-K-NHEDEVLDIAFD---YSGSKLATASSDQTANLWTVGGAVELL-Q--TFYGHSNEVSKVLDI 504 (616)
Q Consensus 440 -~------~~~~~~~~-~-~~~~~v~~l~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~-~--~~~~~~~~~~~i~~~ 504 (616)
+ .|.++..+ . .....|.++..- .++.+++..+.+|.++-..+..-.... . ....-... ..+..+
T Consensus 73 lp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~ 151 (307)
T 1zi0_A 73 LPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGV 151 (307)
T ss_dssp SCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEE
T ss_pred CcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEE
Confidence 2 23322211 1 134456666442 345678999999999998764321110 0 00000111 334444
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCc--------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe--
Q psy3640 505 AFDYSGSKLATASSDQTAKLWTVGGA--------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE-- 574 (616)
Q Consensus 505 ~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~-- 574 (616)
........++..+.+|.+..++...- ......+. ....|.++...+++..+++.+..|.++-.++..-.
T Consensus 152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~ 230 (307)
T 1zi0_A 152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTK 230 (307)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCC
T ss_pred EEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccC
Confidence 44455667888889998888876321 11111121 23456666655556678888999998887763211
Q ss_pred -------eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 575 -------CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 575 -------~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
....+....+.+..+....+...|+..+.+|.+.-.++
T Consensus 231 ~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 231 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred CCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 12223323355655555445566666777776655444
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.44 E-value=1.3e+02 Score=33.35 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=32.7
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 449 (616)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777888899999999999999999999988764
No 364
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=70.60 E-value=70 Score=29.88 Aligned_cols=241 Identities=11% Similarity=0.042 Sum_probs=119.9
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeE---------EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640 321 DQSTFCSCSMDHTARIFNTNSGQEMH---------TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY 391 (616)
Q Consensus 321 ~~~~l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~ 391 (616)
+...+++.+.+|.|+--.+.+-+... .++ ....+..+........++..+..|.+.-+....-......
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~- 79 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG- 79 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS-
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC-
Confidence 34456666667766655543321111 112 1233334444444567777778888776665422111110
Q ss_pred cccccccCCcceE---EEecCccceeEEEE-c--cCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeecCCCCEEEE
Q psy3640 392 AESTYRASHKPIH---ILTGHSQEISNCLF-N--FSNSMIASSSLDGTAKLWDVRT-------MCCFYTLKNHEDEVLDI 458 (616)
Q Consensus 392 ~~~~~~~~~~~~~---~~~~~~~~i~~~~~-~--~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l 458 (616)
..+.++. .+. ....|.++.. . .++.+++..+.+|.++...+.. +.....+... +.+..+
T Consensus 80 ------a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~ 151 (307)
T 1zi0_A 80 ------ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGV 151 (307)
T ss_dssp ------SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEE
T ss_pred ------CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEE
Confidence 0111110 111 2233444433 2 3456788999999999886531 2222223333 566666
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCceeeee---EEec-cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce---
Q psy3640 459 AFDYSGSKLATASSDQTANLWTVGGAVELLQ---TFYG-HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV--- 531 (616)
Q Consensus 459 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--- 531 (616)
........++..+.+|.+..+....-...-. -... .-.....+.++....++..+++.+..|.++-.++..-.
T Consensus 152 ~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~ 231 (307)
T 1zi0_A 152 DLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKS 231 (307)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCC
T ss_pred EEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCC
Confidence 5555566788888999988887643211100 0000 01122335555555556778889999998888763210
Q ss_pred -----EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640 532 -----ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 532 -----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 571 (616)
.....+....+.+..+....+...++..+.+|.+.-+.+.
T Consensus 232 Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 232 RATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp TTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 1111122223455554443444556666677766655554
No 365
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=69.71 E-value=94 Score=31.03 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=113.5
Q ss_pred CcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCc---ceeEEee------------eceeeEEEcCC----CCEEEEEeC
Q psy3640 271 NVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKE---ECIQTYR------------GHSAEVTFSPD----QSTFCSCSM 330 (616)
Q Consensus 271 ~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~---~~~~~~~------------~~~~~v~~~~~----~~~l~~~~~ 330 (616)
...+.|+|. |+++ .++++...|.|++++.... ..+..+. +....++++|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 456789998 6775 5666778899999975432 1222211 12234789986 333333322
Q ss_pred C------------CcEEEEECCC----------CceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCc-----------
Q psy3640 331 D------------HTARIFNTNS----------GQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSS----------- 375 (616)
Q Consensus 331 d------------g~i~i~d~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~----------- 375 (616)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 1 1344455532 12233332 12234678999999987776654331
Q ss_pred ----EEEEecccccCC--c--ccccccccc--cCCcceEEEecCccceeEEEEccC-----CC-EEEEEeCCC----cEE
Q psy3640 376 ----IVVWDIQYQFGT--R--NAYAESTYR--ASHKPIHILTGHSQEISNCLFNFS-----NS-MIASSSLDG----TAK 435 (616)
Q Consensus 376 ----i~iwd~~~~~~~--~--~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~-----~~-~l~~~~~dg----~i~ 435 (616)
=+|+.+...... . ......... ....+.....+|..+ ..++|.|. +. .+..+...| .-.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp-~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDP-GRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSC-CBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCc-ceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 123333221100 0 000000000 001122233344443 46788886 33 344333212 122
Q ss_pred EEeCCCC------eEEEEeecCC-CCEEEEEEcCC-------CCEEEEEeCCCcEEEEecCCceee--eeEE-ec-----
Q psy3640 436 LWDVRTM------CCFYTLKNHE-DEVLDIAFDYS-------GSKLATASSDQTANLWTVGGAVEL--LQTF-YG----- 493 (616)
Q Consensus 436 iwd~~~~------~~~~~~~~~~-~~v~~l~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~----- 493 (616)
+..+..+ .++..+..+. ..+..+.|-.. +.+| .+...+.|....+...... ...+ .+
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 3333222 2333333221 46777777432 3344 4445577665555433211 1111 11
Q ss_pred cCCCeeeEEEEEEcCCCCEEEEEe
Q psy3640 494 HSNEVSKVLDIAFDYSGSKLATAS 517 (616)
Q Consensus 494 ~~~~~~~i~~~~~s~~~~~l~~~~ 517 (616)
.......+..+...|||.++++..
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEE
T ss_pred cccccCcceEEEECCCCCEEEEec
Confidence 012235688999999999888876
No 366
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.06 E-value=86 Score=29.58 Aligned_cols=239 Identities=6% Similarity=0.009 Sum_probs=128.2
Q ss_pred CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEe---C
Q psy3640 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWD---V 439 (616)
Q Consensus 364 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd---~ 439 (616)
...+++-+.+|.|+--.+..-..... ...-.... ......+..+........++.-+..|.++... +
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~r---------gg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~l 73 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKR---------GGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDL 73 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC-----------------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGS
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhccc---------CCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC
Confidence 34678888899998776542110000 00000011 11233444444455566677677777766543 3
Q ss_pred CC------CeEEEEee--cCCCCEEEEEEcC---CCCEEEEEeCCCcEEEEecCCceeeee-EEec-cCCCeeeEEEEEE
Q psy3640 440 RT------MCCFYTLK--NHEDEVLDIAFDY---SGSKLATASSDQTANLWTVGGAVELLQ-TFYG-HSNEVSKVLDIAF 506 (616)
Q Consensus 440 ~~------~~~~~~~~--~~~~~v~~l~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~i~~~~~ 506 (616)
.. |.++..+- .....|.++..-+ +..+++..+.+|.++.-.+..-..... -... .-.....+..+..
T Consensus 74 p~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~ 153 (327)
T 3uc1_A 74 PEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVL 153 (327)
T ss_dssp CBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEE
T ss_pred cCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEE
Confidence 32 33322211 1344566654433 578999999999999987754221110 0000 0011223444455
Q ss_pred cCCCCEEEEEeCCCcEEEEecC--CceE--------EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe--
Q psy3640 507 DYSGSKLATASSDQTAKLWTVG--GAVE--------LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE-- 574 (616)
Q Consensus 507 s~~~~~l~~~~~dg~i~vwd~~--~~~~--------~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~-- 574 (616)
......++..+..|.+..+... .-.. ....+ .....|.++...+++..|+..+..|.++.-.+..-.
T Consensus 154 ~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~ 232 (327)
T 3uc1_A 154 CSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQ 232 (327)
T ss_dssp ECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred ecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcccc
Confidence 5566788889999998888776 2111 11111 123457777766667789999999998877654321
Q ss_pred -----ee--eEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640 575 -----CI--QVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612 (616)
Q Consensus 575 -----~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~ 612 (616)
-+ ..+..-.+.+..+....+...++..+.+|.+.-+++
T Consensus 233 ~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 233 GRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 12 122221344655555555566777777777665554
No 367
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.68 E-value=70 Score=36.42 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=32.2
Q ss_pred ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q psy3640 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449 (616)
Q Consensus 412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 449 (616)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 44556667788899999999999999999999988764
No 368
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=58.46 E-value=2.2e+02 Score=31.47 Aligned_cols=38 Identities=16% Similarity=0.328 Sum_probs=33.3
Q ss_pred cCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640 542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579 (616)
Q Consensus 542 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 579 (616)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677888888899999999999999999999998765
No 369
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=57.88 E-value=1.4e+02 Score=28.86 Aligned_cols=175 Identities=10% Similarity=0.094 Sum_probs=103.9
Q ss_pred CCcceEEEEECCCCCEEEEEEC---------------CCcEEEEECCCC--cEEEEEecc------CCcEEEEEEc---C
Q psy3640 186 HLLPLTNITFDKFGTRCLTGSY---------------DRTCKLWDIKSG--HEICTYRGH------QNVVYAVAFS---E 239 (616)
Q Consensus 186 h~~~i~~v~~s~~g~~lasgs~---------------dg~i~iwd~~~~--~~~~~~~~h------~~~I~~l~fs---~ 239 (616)
+--.|..+..++++++-+.=+. --.|.+||+.+. +.++++.-. ...+..+++. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 5567899999988775543211 125889999999 998887532 3457788877 2
Q ss_pred C----CC--EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece
Q psy3640 240 P----YG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS 313 (616)
Q Consensus 240 ~----~~--lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 313 (616)
. +. +++=+....|.|+|+.+++.-+.+..+ |. ++.....+ -+|.-. .+..+.
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--------~~-pd~~~~~~--i~G~~~-----------~~~~Gi 222 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--------FK-AERPTKFD--YGGKEY-----------EFKAGI 222 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--------GS-CCSCEEEE--ETTEEE-----------EECCCE
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--------Cc-cccCcceE--ECCEEe-----------EeccCc
Confidence 2 22 445567889999999999887666322 22 22111111 122211 234456
Q ss_pred eeEEEcCC----CCEEEEEeCCCc-EEEEE---CCCC---ceeEEee--cCCcCEEEEEEc-CCCCEEEEEECCCcEEEE
Q psy3640 314 AEVTFSPD----QSTFCSCSMDHT-ARIFN---TNSG---QEMHTLK--AHTGPVISLQFS-SDRNMLITGSFDSSIVVW 379 (616)
Q Consensus 314 ~~v~~~~~----~~~l~~~~~dg~-i~i~d---~~~~---~~~~~~~--~~~~~v~~l~~~-~~~~~l~~g~~dg~i~iw 379 (616)
..++++|+ ++.|......+. +.--. ++.. ..+..+- +....-..+++. .+|.++++--....|..|
T Consensus 223 ~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w 302 (381)
T 3q6k_A 223 FGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCW 302 (381)
T ss_dssp EEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEE
T ss_pred eEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEE
Confidence 67788887 667766655542 22222 1111 1222221 112344566775 577777777778899999
Q ss_pred ecc
Q psy3640 380 DIQ 382 (616)
Q Consensus 380 d~~ 382 (616)
+..
T Consensus 303 ~~~ 305 (381)
T 3q6k_A 303 NTQ 305 (381)
T ss_dssp ETT
T ss_pred eCC
Confidence 976
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=55.01 E-value=30 Score=35.81 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=43.3
Q ss_pred CEEEEEEecCCCEEEEEECC------------CcEEEecCCcCeeeeEeccCc-ccEEEEEEeeCCCEEEEe
Q psy3640 543 EVSKVSFHPTGKLVLSGSQD------------TTCRLWSTESGECIQVLKAHE-DDVFSCGFNYNGDTIITA 601 (616)
Q Consensus 543 ~v~~l~~spdg~~l~s~s~d------------g~i~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~t~ 601 (616)
..-.|+|+|.|++++.-..+ ..+.+.+..+++..+.+.++. .+++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999866654322 246666777888777776654 579999999999988765
No 371
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.38 E-value=21 Score=37.63 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=29.4
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc
Q psy3640 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA 581 (616)
Q Consensus 543 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 581 (616)
.|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554443 567999999999999999999998876643
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=53.11 E-value=1.5e+02 Score=27.83 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=120.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC----ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640 320 PDQSTFCSCSMDHTARIFNTNSG----QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST 395 (616)
Q Consensus 320 ~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 395 (616)
|+...+++.+.+|.|+--.+..- .....++ ....+..+........++..+..|.+.-+....-......
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~----- 76 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK----- 76 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT-----
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC-----
Confidence 44556666777777765543211 1111122 2234444444445567777788888776665422111100
Q ss_pred cccCCcceE---EEecCccceeEE-EEcc--CCCEEEEEeCCCcEEEEeCCC--------CeEEEEeecCCCCEEEEEEc
Q psy3640 396 YRASHKPIH---ILTGHSQEISNC-LFNF--SNSMIASSSLDGTAKLWDVRT--------MCCFYTLKNHEDEVLDIAFD 461 (616)
Q Consensus 396 ~~~~~~~~~---~~~~~~~~i~~~-~~~~--~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~l~~~ 461 (616)
..+.++. .+. ....|.++ .... ++.+++..+.+|.++...+.. +.....+. ..+.+..+...
T Consensus 77 --a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~-e~d~lv~~~~~ 152 (323)
T 1wp5_A 77 --DLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLT 152 (323)
T ss_dssp --SCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEE
T ss_pred --CCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeC-CCCEEEEEEEe
Confidence 0111110 111 12234443 3322 256788999999999887632 22222233 23566666555
Q ss_pred CCCCEEEEEeCCCcEEEEecCCceeeeeE---Eec-cCCCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEecCCc------
Q psy3640 462 YSGSKLATASSDQTANLWTVGGAVELLQT---FYG-HSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTVGGA------ 530 (616)
Q Consensus 462 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~-~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~------ 530 (616)
.....++..+.+|.+..+....-...-+. ... .-.....+.++..-+++. .+++.+..|..+..++..-
T Consensus 153 ~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg 232 (323)
T 1wp5_A 153 DGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRA 232 (323)
T ss_dssp CSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTT
T ss_pred CCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCC
Confidence 55667888899999888877532111000 000 001112344444334444 7888889988887776321
Q ss_pred ---eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640 531 ---VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571 (616)
Q Consensus 531 ---~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~ 571 (616)
......+......+..+....++..++..+.+|.+.-..+.
T Consensus 233 ~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 233 KRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp SCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred CCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 11111121222245443333334456666777776655554
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=52.07 E-value=2.2e+02 Score=29.42 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=39.5
Q ss_pred eEEEEEEcCCCCEEEEEeCC------------CcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEE
Q psy3640 500 KVLDIAFDYSGSKLATASSD------------QTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 500 ~i~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~ 559 (616)
..-.++|+|.|+++++-..+ +.+.+.+..++ +..+.+.+ ...+++.++|+||++.|.+.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34568999999977765543 23455555543 33343443 35689999999999988765
No 374
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.91 E-value=1.5e+02 Score=27.10 Aligned_cols=201 Identities=10% Similarity=0.035 Sum_probs=110.8
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCC
Q psy3640 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLD 431 (616)
Q Consensus 353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 431 (616)
..+..+........|+.-+..|.++--.+..-..... .. + + .....|..+.... +...++..+.+
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~---------~~--l--l-~~~e~i~~v~~~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK---------VS--L--K-SREEKIVGAFIREKFGNRLLLATKK 89 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE---------CC--C--S-STTCCEEEEEEGGGSCSEEEEEETT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc---------cc--c--C-CCCCEEEEEECCcCCCCEEEEEeCC
Confidence 3444444444445666667788776544321111000 00 1 2 2334455544321 56789999999
Q ss_pred CcEEEEeCCCC------eEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee------eeEEeccCCCee
Q psy3640 432 GTAKLWDVRTM------CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL------LQTFYGHSNEVS 499 (616)
Q Consensus 432 g~i~iwd~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~ 499 (616)
|.++...+... .....+. ..+.+..+........++..+..|.+..+....-... ...+. - ....
T Consensus 90 G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~-L-~~~d 166 (276)
T 3no0_A 90 GYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIK-L-EKND 166 (276)
T ss_dssp SEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCC-C-CTTC
T ss_pred CEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEc-c-CCCC
Confidence 99998876432 2222222 3456666666666678888999999888876432111 00010 1 1123
Q ss_pred eEEEEEEcCCCCEEEEEeCCCcEEEEecCCc------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEE--ecCC
Q psy3640 500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGA------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRL--WSTE 571 (616)
Q Consensus 500 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i--wd~~ 571 (616)
.+..+...+++..++..+..|.++...+..- ..-...+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 167 ~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 167 ETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 4555555566778999999999988876321 1111112 23445555544444446677777887777 7654
No 375
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=49.57 E-value=1.9e+02 Score=27.89 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=128.8
Q ss_pred CCEEEEEECCCeEEEEeCCCc--------ceeEEee-----eceeeEEEcCCCCEEEEEeCCCcEEEEECCCC-------
Q psy3640 283 GDKILTGSFDKTLKLWASAKE--------ECIQTYR-----GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG------- 342 (616)
Q Consensus 283 ~~~l~s~s~dg~i~iwd~~~~--------~~~~~~~-----~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~------- 342 (616)
...++.-..||+|..|-.... ....... .....+.+.......+.-..+|.|+.|-....
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 345556667788888843321 1111110 01112234445566666778888888864321
Q ss_pred -c---eeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640 343 -Q---EMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417 (616)
Q Consensus 343 -~---~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 417 (616)
. ....+.. ....+..++.+......+.-..||.|..|-.............. ...+..........|..++
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~----~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP----CDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC----EEEEEECGGGTTSCEEEEE
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc----CcCCeEecccCCCeEEEEE
Confidence 1 1111211 22345556676666777777889999999654321110000000 0001110011112344443
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCC-----------eEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640 418 FNFSNSMIASSSLDGTAKLWDVRTM-----------CCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV 485 (616)
Q Consensus 418 ~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~ 485 (616)
. .....++-..+|.|+.|-.... .....+. .....|..++........+....+|.+..|-.....
T Consensus 166 ~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 166 A--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp E--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred e--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 3 3455666677889999954320 1111121 123467777765434566677789999999654311
Q ss_pred ee--------eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc----------eEEeEEeec-cccCEEE
Q psy3640 486 EL--------LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA----------VELLQTFYG-HSNEVSK 546 (616)
Q Consensus 486 ~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~-h~~~v~~ 546 (616)
++ .............+..++. .....++-..+|.|+.|-.... ......... ....|..
T Consensus 244 qLG~g~~~~~~~p~~v~~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKIDSLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp TTSSSSCCCEEEEEECGGGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCccccEEecccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 10 0000000001112333332 3344555577888888865321 111111211 1234666
Q ss_pred EEEecCCCEEEEEECCCcEEEecCCc
Q psy3640 547 VSFHPTGKLVLSGSQDTTCRLWSTES 572 (616)
Q Consensus 547 l~~spdg~~l~s~s~dg~i~iwd~~~ 572 (616)
++... ...+.-..||.|+.|-...
T Consensus 322 ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 322 IATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEECS--SEEEEEETTCCEEEEECCT
T ss_pred EEecc--CeEEEECCCCCEEEeeCCC
Confidence 65433 3455557889999997653
No 376
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=49.20 E-value=60 Score=33.29 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=44.1
Q ss_pred cCEEEEEEecCCCEEEEEEC------------CCcEEEecCCcCeeeeEeccC-cccEEEEEEeeCCCEEEEee
Q psy3640 542 NEVSKVSFHPTGKLVLSGSQ------------DTTCRLWSTESGECIQVLKAH-EDDVFSCGFNYNGDTIITAS 602 (616)
Q Consensus 542 ~~v~~l~~spdg~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~t~s 602 (616)
.....|.|.++|.+.++... ...+..++..+|+....+.+. ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987763321 125777788888877666544 35689999999999887653
No 377
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.51 E-value=45 Score=37.99 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.1
Q ss_pred CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640 543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579 (616)
Q Consensus 543 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~ 579 (616)
.+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4555667788889999999999999999999988765
No 378
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=45.35 E-value=2.2e+02 Score=27.42 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=130.9
Q ss_pred CEEEEEeCCCcEEEEECCC-C-------ceeEEee---c-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 323 STFCSCSMDHTARIFNTNS-G-------QEMHTLK---A-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 323 ~~l~~~~~dg~i~i~d~~~-~-------~~~~~~~---~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
+.++.-..||.|+.|=.+. + ....... . ....+..++. .....+.-..||.|..|-.......-..
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 4455556677777774432 1 1111111 0 1123455543 3345666677999999965422111000
Q ss_pred ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEeec-CCCCEEEE
Q psy3640 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT-----------MCCFYTLKN-HEDEVLDI 458 (616)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~-~~~~v~~l 458 (616)
.... ...+..........+..++++......++-+.+|.|+.|-... ......+.. ....|..+
T Consensus 89 ~~~~----~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~v 164 (389)
T 3kci_A 89 GTES----VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDV 164 (389)
T ss_dssp SSCC----EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred CcCC----ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEE
Confidence 0000 0011111111222344456666667777778899999995432 111122222 22357777
Q ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcee--------eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640 459 AFDYSGSKLATASSDQTANLWTVGGAVE--------LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA 530 (616)
Q Consensus 459 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 530 (616)
+.. ....++...+|.+..|-.....+ ..............+..++........++-..+|.|..|-....
T Consensus 165 a~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~ 242 (389)
T 3kci_A 165 AAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242 (389)
T ss_dssp EEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGG
T ss_pred EeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCC
Confidence 665 34556667899999997543111 00111111111123555555544466777788999999965321
Q ss_pred ----------eEEeEEeecc-ccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee-----------eeEecc-CcccEE
Q psy3640 531 ----------VELLQTFYGH-SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC-----------IQVLKA-HEDDVF 587 (616)
Q Consensus 531 ----------~~~~~~~~~h-~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~-h~~~V~ 587 (616)
......+... ...|..++.... ..+.-..||.|..|-....-. ...+.. ....|.
T Consensus 243 GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 1111122211 224666665433 444456889999996532111 111111 112455
Q ss_pred EEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640 588 SCGFNYNGDTIITASKDNTCCIWRSM 613 (616)
Q Consensus 588 ~l~~s~~~~~l~t~s~Dg~i~vW~~~ 613 (616)
.++. -....+....||.|+.|=..
T Consensus 321 ~ia~--G~~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 321 AIAT--GSLHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp EEEE--CSSEEEEEETTCCEEEEECC
T ss_pred EEEe--ccCeEEEECCCCCEEEeeCC
Confidence 5543 34455666788888888543
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=45.14 E-value=35 Score=36.03 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=31.6
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG 227 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~ 227 (616)
..|.++.+ +..++++-+.|.++|+||+++++.+.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 35777666 468999999999999999999998877654
No 380
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=44.70 E-value=2.2e+02 Score=27.40 Aligned_cols=185 Identities=9% Similarity=0.177 Sum_probs=94.3
Q ss_pred cEEEEECCCC--ceeEEeecC------CcCEEEEEEc---CC----CCEEEEEE-CCCcEEEEecccccCCccccccccc
Q psy3640 333 TARIFNTNSG--QEMHTLKAH------TGPVISLQFS---SD----RNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTY 396 (616)
Q Consensus 333 ~i~i~d~~~~--~~~~~~~~~------~~~v~~l~~~---~~----~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~ 396 (616)
.|.+||+.+. +.++++.-. ...+..+++. |+ +.++..+. ..+.|.++|+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-------------- 189 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-------------- 189 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT--------------
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC--------------
Confidence 5777888888 777776532 3456777777 22 23333333 46778899987
Q ss_pred ccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC----CCEEEEEeC
Q psy3640 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS----GSKLATASS 472 (616)
Q Consensus 397 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~~~l~~~~~ 472 (616)
.......+ |.. +.|+...... -+|. ... -...+..|+++|+ ++.|.-...
T Consensus 190 --~~~swRv~--~~~------~~pd~~~~~~--i~G~----------~~~----~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 190 --KQDSWNVT--HPT------FKAERPTKFD--YGGK----------EYE----FKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp --TTEEEEEE--CGG------GSCCSCEEEE--ETTE----------EEE----ECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred --CCcEEEEc--cCC------CccccCcceE--ECCE----------EeE----eccCceEEEecCCcCCCCeEEEEEEC
Confidence 33333333 111 1222111100 0121 110 1345888888887 666665554
Q ss_pred CCcEEEEecCC-----ce-eeeeEEeccCCCeeeEEEEEEc-CCCCEEEEEeCCCcEEEEecCC-ce-----EEeEEeec
Q psy3640 473 DQTANLWTVGG-----AV-ELLQTFYGHSNEVSKVLDIAFD-YSGSKLATASSDQTAKLWTVGG-AV-----ELLQTFYG 539 (616)
Q Consensus 473 dg~i~iwd~~~-----~~-~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~vwd~~~-~~-----~~~~~~~~ 539 (616)
.+. ++|.+.+ .. ...-...+.....+.-..++++ .+|..+++--..+.|..|+..+ .. ..+.. ..
T Consensus 244 ss~-~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~ 321 (381)
T 3q6k_A 244 SAI-KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SS 321 (381)
T ss_dssp SCS-EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CT
T ss_pred CCC-cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CC
Confidence 432 3333321 10 0011112222222334456776 6777777777889999999876 21 22221 11
Q ss_pred cccCEEEEEEecCCCEEEEE
Q psy3640 540 HSNEVSKVSFHPTGKLVLSG 559 (616)
Q Consensus 540 h~~~v~~l~~spdg~~l~s~ 559 (616)
.-..+..+.+.++|.+-+..
T Consensus 322 ~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 322 RFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TCCSEEEEEECTTSCEEEEE
T ss_pred CccccCeEEECCCCeEEEEE
Confidence 22346777777777654544
No 381
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=43.09 E-value=2.4e+02 Score=27.37 Aligned_cols=204 Identities=9% Similarity=0.008 Sum_probs=102.3
Q ss_pred CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-c------------eeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEE
Q psy3640 271 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-E------------CIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIF 337 (616)
Q Consensus 271 ~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~------------~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~ 337 (616)
..|..++.. ..+.+....||.|..|-.... + ....+......+.++....+.++-..+|.|+.|
T Consensus 75 ~~v~~va~G---~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 75 PDAVDISAG---GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SSEEEEEEC---SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCceEEeeC---CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEE
Confidence 357677654 677888889999999954321 1 011111122233455555666677788999999
Q ss_pred EC--CC-Cce--------eEEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc-------ccccc
Q psy3640 338 NT--NS-GQE--------MHTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE-------STYRA 398 (616)
Q Consensus 338 d~--~~-~~~--------~~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~ 398 (616)
-. .. ++. ..... .....|..++.. ....+.-..+|.|+.|-............. .....
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 229 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRD 229 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccccccc
Confidence 75 22 221 11111 123456666653 345566678999999965422111100000 00000
Q ss_pred CCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEeecCCCCEEEEEEcCCCCEE
Q psy3640 399 SHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT-----------MCCFYTLKNHEDEVLDIAFDYSGSKL 467 (616)
Q Consensus 399 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~v~~l~~~~~~~~l 467 (616)
...+..........|..++.. ....++.-..+|.++.|-... .............|..++... ...
T Consensus 230 ~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht 306 (423)
T 3mvd_K 230 LLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHT 306 (423)
T ss_dssp TSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEE
T ss_pred ccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeE
Confidence 112222222233345544433 122233335778888885322 111111111234577666543 355
Q ss_pred EEEeCCCcEEEEecC
Q psy3640 468 ATASSDQTANLWTVG 482 (616)
Q Consensus 468 ~~~~~dg~i~iwd~~ 482 (616)
+.-..+|.+..|-..
T Consensus 307 ~alt~~G~v~~wG~n 321 (423)
T 3mvd_K 307 VILTTDLKCSVVGRP 321 (423)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCcEEEEECC
Confidence 566789999999654
No 382
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=42.26 E-value=2.5e+02 Score=27.21 Aligned_cols=281 Identities=8% Similarity=0.056 Sum_probs=137.5
Q ss_pred cceEEEEECCCCCEEEEEECCCcEEEEECCCC-c----------EEEEEec-cCCcEEEEEEcCCCCEEEEECCCcEEEE
Q psy3640 188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG-H----------EICTYRG-HQNVVYAVAFSEPYGCLTGSYDRTCKLW 255 (616)
Q Consensus 188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~-~----------~~~~~~~-h~~~I~~l~fs~~~~lls~s~d~~I~iw 255 (616)
..|..|+.. +...++-..||.|..|=.... + ....+.. ....|..++...+..++....++.|+.|
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 345555553 345556667888888854321 1 1112221 2336777776544434333334599999
Q ss_pred eCCCC--------ceE---EEeeC-CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce--------e---EEeee-
Q psy3640 256 DIKSG--------HEI---CTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC--------I---QTYRG- 311 (616)
Q Consensus 256 d~~~~--------~~~---~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~---~~~~~- 311 (616)
-.... ... ..+.. ....|..++.. ..+.+....+|.|..|-....-. . ..+..
T Consensus 94 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G---~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG---DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred cCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC---hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 54221 111 11111 23367777764 56777778999999996433210 0 11111
Q ss_pred -ceeeEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy3640 312 -HSAEVTFSPDQSTFCSCSMDHTARIFNTNSG-Q----------EMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVV 378 (616)
Q Consensus 312 -~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~-~----------~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~i 378 (616)
......+.....+.++-..+|.++.|-.... + ....+.. ....|..++.. ....+.-..+|.|+.
T Consensus 171 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~ 248 (406)
T 4d9s_A 171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGALYT 248 (406)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCEEE
T ss_pred CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCEEE
Confidence 0122244555566677778999999964321 1 0111111 12356666553 345555677899999
Q ss_pred EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC----------e-EEEE
Q psy3640 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM----------C-CFYT 447 (616)
Q Consensus 379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~-~~~~ 447 (616)
|-.............. ...+..........|..++. .....++-..+|.++.|-.... . ....
T Consensus 249 wG~n~~GqlG~g~~~~----~~~p~~v~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 322 (406)
T 4d9s_A 249 YGWSKYGQLGHGDLED----HLIPHKLEALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQ 322 (406)
T ss_dssp EECCTTSTTCSSSCCC----EEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEE
T ss_pred eeCCCCCCCCCCCCcC----ccccEEecccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEE
Confidence 9754221111000000 00011110111223444433 3445555567888888854321 0 1111
Q ss_pred ee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640 448 LK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483 (616)
Q Consensus 448 ~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~ 483 (616)
+. .....|..++.-. ...++...+|.+..|-...
T Consensus 323 v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 323 VRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp ECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECCT
T ss_pred EeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCCC
Confidence 11 1234566666543 3455556888888886543
No 383
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=41.81 E-value=1.1e+02 Score=23.24 Aligned_cols=46 Identities=11% Similarity=0.221 Sum_probs=24.9
Q ss_pred EEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEE
Q psy3640 545 SKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600 (616)
Q Consensus 545 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t 600 (616)
..+.+..+|++++... ++.+ +|...+... .+ ...+.+.+||.+++-
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t~~~-------~~-~~~~~L~~dGnlvly 104 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNTVGQ-------EG-DYVLILQINGQAVVY 104 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSCCCS-------SS-CCEEEECTTSCEEEE
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCCcCC-------CC-CEEEEEcCCceEEEe
Confidence 4567778888777643 4443 787654211 11 123445566666655
No 384
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.28 E-value=1.7e+02 Score=30.09 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=40.9
Q ss_pred eeeEEEEEEcCCCCEEEEEeCC------------CcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEEE
Q psy3640 498 VSKVLDIAFDYSGSKLATASSD------------QTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGS 560 (616)
Q Consensus 498 ~~~i~~~~~s~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s 560 (616)
......+.|+++|.+.++.... +.+..++..++ ++...+.. ...+++.++|+||++.|.++-
T Consensus 475 fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-el~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 475 FNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred cCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCC-eEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3455678999999887754321 24566666543 33333433 345799999999999887764
No 385
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=32.09 E-value=3.4e+02 Score=25.91 Aligned_cols=153 Identities=13% Similarity=0.107 Sum_probs=84.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCC---------CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640 320 PDQSTFCSCSMDHTARIFNTNS---------GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390 (616)
Q Consensus 320 ~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 390 (616)
|+...+++.+.+|.|+--.+.. +.....++ ....+..+........++..+..|.+.-+..........
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r- 82 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS- 82 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT-
T ss_pred cCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc-
Confidence 5666777778888777654321 12222333 244555555555667777788888877666542211100
Q ss_pred ccccccccCCcceE---EEecCccceeEEEEc---cCCCEEEEEeCCCcEEEEeCCC-------CeEEEEeecCCCCEEE
Q psy3640 391 YAESTYRASHKPIH---ILTGHSQEISNCLFN---FSNSMIASSSLDGTAKLWDVRT-------MCCFYTLKNHEDEVLD 457 (616)
Q Consensus 391 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~ 457 (616)
...+.++. .+. ....|.++..- ..+.+++.++..|.++...+.. +.....+. ..+.+..
T Consensus 83 ------~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~-~~d~lv~ 154 (370)
T 3l6v_A 83 ------NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLD-EGDALVG 154 (370)
T ss_dssp ------TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCC-TTCCEEE
T ss_pred ------ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeC-CCCEEEE
Confidence 00111111 111 22344444332 2456899999999999887532 22222333 2455666
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640 458 IAFDYSGSKLATASSDQTANLWTVG 482 (616)
Q Consensus 458 l~~~~~~~~l~~~~~dg~i~iwd~~ 482 (616)
+........++..+.+|.+..+...
T Consensus 155 v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 155 VALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEECSCCEEEEEETTSEEEEEEGG
T ss_pred EEEeCCCceEEEEeCCCeEEEEEcc
Confidence 5555556678888899988888764
No 386
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=32.07 E-value=3.6e+02 Score=26.11 Aligned_cols=241 Identities=10% Similarity=-0.006 Sum_probs=117.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCC-Cc------------eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEec-
Q psy3640 316 VTFSPDQSTFCSCSMDHTARIFNTNS-GQ------------EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI- 381 (616)
Q Consensus 316 v~~~~~~~~l~~~~~dg~i~i~d~~~-~~------------~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~- 381 (616)
+.+.....+.++-..+|.|+.|-... ++ ....+. ....|..++.. ....+.-..||.|..|-.
T Consensus 78 ~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~wG~~ 154 (423)
T 3mvd_K 78 VDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFAWGSF 154 (423)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEEEECE
T ss_pred eEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEEEeCC
Confidence 34555667777778899999996532 11 111111 23456666653 345555678999999975
Q ss_pred -ccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC------------------
Q psy3640 382 -QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM------------------ 442 (616)
Q Consensus 382 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------------ 442 (616)
.......... . ...+..........|..++. .....++-..+|.|+.|-....
T Consensus 155 ~n~~GqlG~~~----~--~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 226 (423)
T 3mvd_K 155 RDSHGNMGLTI----D--GNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRG 226 (423)
T ss_dssp ECSSSEEESBT----T--BCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTT
T ss_pred CCCCCCcCcCC----C--CCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccc
Confidence 2110000000 0 00111111122234544443 3445666677889999953221
Q ss_pred -----eEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-------eEEeccCCCeeeEEEEEEcCCC
Q psy3640 443 -----CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL-------QTFYGHSNEVSKVLDIAFDYSG 510 (616)
Q Consensus 443 -----~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~i~~~~~s~~~ 510 (616)
.+..........|..++.... ..++.-..+|.+..|-.....++- ............|..++ ...
T Consensus 227 ~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia--~G~ 303 (423)
T 3mvd_K 227 KRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIA--GGQ 303 (423)
T ss_dssp TTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEE--ECS
T ss_pred cccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEE--ccc
Confidence 111111112335666655422 223333688899988654311100 00000000012233333 334
Q ss_pred CEEEEEeCCCcEEEEecCCc-----------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc
Q psy3640 511 SKLATASSDQTAKLWTVGGA-----------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572 (616)
Q Consensus 511 ~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 572 (616)
...++-..+|.|+.|-.... .............|..++.... .-+.-..||.|+.|=...
T Consensus 304 ~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 304 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 45556677888888865321 1122222223336777776543 344446889999996544
No 387
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=31.25 E-value=15 Score=18.83 Aligned_cols=16 Identities=56% Similarity=1.223 Sum_probs=10.0
Q ss_pred cceeee--ccCCceeeee
Q psy3640 5 EKCVGC--YGNGSFVDFC 20 (616)
Q Consensus 5 ~~~~~~--~~~~~~~~~~ 20 (616)
|.||.| +|||---|-|
T Consensus 1 ~~cvscv~fgngfcgdnc 18 (27)
T 2hgo_A 1 ETCVSCVNFGNGFCGDNC 18 (27)
T ss_dssp CCCCSCEEETTTEEECSS
T ss_pred CcceEeEeecCccccCCc
Confidence 468888 5777544433
No 388
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=27.16 E-value=15 Score=19.56 Aligned_cols=9 Identities=33% Similarity=0.962 Sum_probs=5.1
Q ss_pred cceeeeccC
Q psy3640 5 EKCVGCYGN 13 (616)
Q Consensus 5 ~~~~~~~~~ 13 (616)
|.|+|||.|
T Consensus 1 e~~l~~is~ 9 (26)
T 2nvj_A 1 EFCLNCVSH 9 (26)
T ss_dssp CCSSSTTTT
T ss_pred CeEEEEeCC
Confidence 446666655
No 389
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=26.95 E-value=2.1e+02 Score=21.72 Aligned_cols=26 Identities=0% Similarity=-0.156 Sum_probs=15.4
Q ss_pred EEEEEcCCCCEEEEECCCcEEEEeCCC
Q psy3640 233 YAVAFSEPYGCLTGSYDRTCKLWDIKS 259 (616)
Q Consensus 233 ~~l~fs~~~~lls~s~d~~I~iwd~~~ 259 (616)
..+.+..+|.++.-..++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECCCCCE-EEECCC
Confidence 34667777777655555544 676443
No 390
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=21.16 E-value=5.5e+02 Score=24.61 Aligned_cols=287 Identities=11% Similarity=0.056 Sum_probs=135.2
Q ss_pred CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-c-------e---eEEeee--ceeeEEEcCCCCEEEEEeCC-CcE
Q psy3640 269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-E-------C---IQTYRG--HSAEVTFSPDQSTFCSCSMD-HTA 334 (616)
Q Consensus 269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~-------~---~~~~~~--~~~~v~~~~~~~~l~~~~~d-g~i 334 (616)
....|..++.. ..+.+.-..||.|..|-.... + . ...+.. ....+.++....+.++...+ +.|
T Consensus 14 ~~~~v~~ia~G---~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v 90 (406)
T 4d9s_A 14 PPRKVLIISAG---ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 90 (406)
T ss_dssp -CCCEEEEEEC---SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEE
T ss_pred CccceEEEecC---CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEE
Confidence 34567777754 566777778999999954321 1 0 011110 01122344444454544555 488
Q ss_pred EEEECCCC---------cee--EEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640 335 RIFNTNSG---------QEM--HTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402 (616)
Q Consensus 335 ~i~d~~~~---------~~~--~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 402 (616)
+.|-.... ... ..+.. ....|..++.. ....+.-..+|.|+.|-.............. ...+
T Consensus 91 ~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~----~~~p 164 (406)
T 4d9s_A 91 YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTED----SLVP 164 (406)
T ss_dssp EEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCC----EEEE
T ss_pred EEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCC----cccc
Confidence 88854321 011 11111 22357777653 3455666789999999754221111000000 0001
Q ss_pred eEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC----------e-EEEEeec-CCCCEEEEEEcCCCCEEEEE
Q psy3640 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM----------C-CFYTLKN-HEDEVLDIAFDYSGSKLATA 470 (616)
Q Consensus 403 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~-~~~~~~~-~~~~v~~l~~~~~~~~l~~~ 470 (616)
..........|..++. .....++-..+|.++.|-.... . ....+.. ....|..++... ...+..
T Consensus 165 ~~v~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~--~ht~~l 240 (406)
T 4d9s_A 165 QKIQAFEGIRIKMVAA--GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW--RHTISV 240 (406)
T ss_dssp EECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS--SEEEEE
T ss_pred eEecccCCCcEEEEec--CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC--CcEEEE
Confidence 1100111123444433 3445666678889999954321 1 1111111 224566666543 345556
Q ss_pred eCCCcEEEEecCCceee--------eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc-----------e
Q psy3640 471 SSDQTANLWTVGGAVEL--------LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA-----------V 531 (616)
Q Consensus 471 ~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~ 531 (616)
..+|.+..|-.....++ .....-.......|..++ ......++-..+|.++.|-.... .
T Consensus 241 ~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~--~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~ 318 (406)
T 4d9s_A 241 SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS--GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 318 (406)
T ss_dssp ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEE
T ss_pred cCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEE--ecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCc
Confidence 78899999965432111 000000001111233332 23445555667888888864321 1
Q ss_pred EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc
Q psy3640 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572 (616)
Q Consensus 532 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~ 572 (616)
.+..........|..++... ...+.-..||.|+.|=...
T Consensus 319 ~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 319 SPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECCT
T ss_pred cCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCCC
Confidence 11121112234566665433 3445556788999996543
No 391
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.92 E-value=2e+02 Score=21.71 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=26.4
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEe
Q psy3640 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWD 256 (616)
Q Consensus 191 ~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd 256 (616)
..+.+..||.+++... ++ +|...+... ..-..+.+..+|.++.-..++.+.+|.
T Consensus 22 ~~L~~q~dGnLvl~~~-~~---vW~snt~~~--------~~~~~l~l~~dGNLVl~~~~~~~~vW~ 75 (111)
T 3mez_A 22 AAFVMQGDCNLVLYNE-AG---GFQSNTHGR--------GVDCTLRLNNRGQLEIHSANSNTPVWV 75 (111)
T ss_dssp EEEEECTTSCEEEECS-SC---CEECCCTTS--------CSSCEEEECTTSCEEEECSSCSSCSEE
T ss_pred EEEEEccCCeEEEECC-CC---EEECCcccC--------CcCEEEEEcCCCcEEEEeCCCCEEEEE
Confidence 4555666666655322 22 666543211 111345566666666554444444553
Done!