RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3640
(616 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 239 bits (611), Expect = 2e-74
Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 24/310 (7%)
Query: 305 CIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS 361
+T +GH+ VT FSPD + S D T ++++ +G+ + TLK HTGPV + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS 421
+D L +GS D +I +WD++ + + + LTGH+ +S+ F+
Sbjct: 61 ADGTYLASGSSDKTIRLWDLE----------------TGECVRTLTGHTSYVSSVAFSPD 104
Query: 422 NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481
+++SSS D T K+WDV T C TL+ H D V +AF G+ +A++S D T LW +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164
Query: 482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS 541
+ + T GH+ EV+ V AF G KL ++SSD T KLW + + L T GH
Sbjct: 165 RTG-KCVATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHE 219
Query: 542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
N V+ V+F P G L+ SGS+D T R+W +GEC+Q L H + V S ++ +G + +
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279
Query: 602 SKDNTCCIWR 611
S D T IW
Sbjct: 280 SADGTIRIWD 289
Score = 237 bits (607), Expect = 1e-73
Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 23/302 (7%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
LK H +T + F G TGS D T K+WD+++G + T +GH V VA S G
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS-ADG 63
Query: 243 --CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 300
+GS D+T +LWD+++G + T GH + V +VAFS P G + + S DKT+K+W
Sbjct: 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDV 122
Query: 301 AKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS 357
+C+ T RGH+ V FSPD + S S D T ++++ +G+ + TL HTG V S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182
Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
+ FS D L++ S D +I +WD+ + K + L GH +++
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLS----------------TGKCLGTLRGHENGVNSVA 226
Query: 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
F+ ++AS S DGT ++WD+RT C TL H + V +A+ G +LA+ S+D T
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286
Query: 478 LW 479
+W
Sbjct: 287 IW 288
Score = 228 bits (584), Expect = 2e-70
Identities = 109/309 (35%), Positives = 164/309 (53%), Gaps = 25/309 (8%)
Query: 221 EICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS 279
T +GH V VAFS TGS D T K+WD+++G + T +GH V VA S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARI 336
G + +GS DKT++LW EC++T GH++ V+ FSPD S S D T ++
Sbjct: 61 -ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119
Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
++ +G+ + TL+ HT V S+ FS D + + S D +I +WD+
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--------------- 164
Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
+ K + LTGH+ E+++ F+ + SSS DGT KLWD+ T C TL+ HE+ V
Sbjct: 165 -RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223
Query: 457 DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
+AF G LA+ S D T +W + E +QT GH+N V+ +A+ G +LA+
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDL-RTGECVQTLSGHTNSVT---SLAWSPDGKRLASG 279
Query: 517 SSDQTAKLW 525
S+D T ++W
Sbjct: 280 SADGTIRIW 288
Score = 210 bits (537), Expect = 2e-63
Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 21/260 (8%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
LK H P+ ++ GT +GS D+T +LWD+++G + T GH + V +VAFS
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106
Query: 243 CLTGS-YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 301
L+ S D+T K+WD+++G + T RGH + V +VAFS P G + + S D T+KLW
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLR 165
Query: 302 KEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
+C+ T GH+ EV FSPD S S D T ++++ ++G+ + TL+ H V S+
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225
Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
FS D +L +GS D +I VWD++ + + + L+GH+ +++ +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLR----------------TGECVQTLSGHTNSVTSLAW 269
Query: 419 NFSNSMIASSSLDGTAKLWD 438
+ +AS S DGT ++WD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289
Score = 203 bits (519), Expect = 7e-61
Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 21/273 (7%)
Query: 344 EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
TLK HTG V + FS D +L TGS D +I VWD++ + +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------ELL 44
Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
L GH+ + + + + +AS S D T +LWD+ T C TL H V +AF
Sbjct: 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104
Query: 464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
G L+++S D+T +W V + L T GH++ V+ V AF G+ +A++S D T K
Sbjct: 105 GRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSV---AFSPDGTFVASSSQDGTIK 160
Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
LW + + + T GH+ EV+ V+F P G+ +LS S D T +LW +G+C+ L+ HE
Sbjct: 161 LWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219
Query: 584 DDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
+ V S F+ +G + + S+D T +W +
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
Score = 106 bits (267), Expect = 1e-25
Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 240
L H + ++ F G + L+ S D T KLWD+ +G + T RGH+N V +VAFS
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 241 -YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 299
Y +GS D T ++WD+++G + T GH N V ++A+S P G ++ +GS D T+++W
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-PDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 183 bits (465), Expect = 2e-51
Identities = 145/446 (32%), Positives = 219/446 (49%), Gaps = 39/446 (8%)
Query: 150 ITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDR 209
++ + E I+ L + +L+ H +T+I F G L+GS D
Sbjct: 28 LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 210 TCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYG----CLTGSYDRTCKLWDIKS-GHE 262
T KLWD+ +G I + G H + V +A S P G + S D T KLWD+ + G
Sbjct: 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147
Query: 263 ICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQTYRGHSAEVT---F 318
I T GH V ++AFS P G + +GS D T+KLW + + T GH+ V+ F
Sbjct: 148 IRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206
Query: 319 SPD-QSTFCSCSMDHTARIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
SPD S S D T R+++ ++G+ + TL H+ V+S FS D ++L +GS D +I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265
Query: 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKL 436
+WD+ R+S + L+GHS + + F+ ++AS S DGT +L
Sbjct: 266 RLWDL---------------RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310
Query: 437 WDVRTMCCFY--TLKNHEDEVLDIAFDYSGSKLATA-SSDQTANLWTVGGAVELLQTFYG 493
WD+ T TLK HE V ++F GS L + S D T LW + + L+T G
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR-TGKPLKTLEG 369
Query: 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553
HSN VL ++F G +++ S+D T +LW + LL+ GH++ V+ + F P G
Sbjct: 370 HSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLS-TGSLLRNLDGHTSRVTSLDFSPDG 424
Query: 554 KLVLSGSQDTTCRLWSTESGECIQVL 579
K + SGS D T RLW ++
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450
Score = 177 bits (450), Expect = 3e-49
Identities = 148/447 (33%), Positives = 214/447 (47%), Gaps = 39/447 (8%)
Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
+ + L L ++ + G L D L D+ S RGH++ + ++AF
Sbjct: 18 KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAF 73
Query: 238 SEP-YGCLTGSYDRTCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYGDKILT--GSFD 292
S L+GS D T KLWD+ +G I + G H + V +A S P G+ IL S D
Sbjct: 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133
Query: 293 KTLKLWASAKE-ECIQTYRGHSAEVT---FSPDQSTFCSCS-MDHTARIFNTNSGQEMHT 347
T+KLW + + I+T GHS VT FSPD S S +D T ++++ +G+ + T
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193
Query: 348 LKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
L HT PV SL FS D ++ +GS D +I +WD+ L
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---------------STGKLLRSTL 238
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGS 465
+GHS + + F+ S++AS S DGT +LWD+R+ TL H VL +AF G
Sbjct: 239 SGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297
Query: 466 KLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAK 523
LA+ SSD T LW + G + T GH VS ++F GS L + S D T +
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS---SLSFSPDGSLLVSGGSDDGTIR 354
Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
LW + L + V VSF P G++V SGS D T RLW +G ++ L H
Sbjct: 355 LWDLRTGKPLKT--LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
Query: 584 DDVFSCGFNYNGDTIITASKDNTCCIW 610
V S F+ +G ++ + S DNT +W
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLW 439
Score = 120 bits (301), Expect = 4e-29
Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 20/299 (6%)
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
S + + + L+ H + S+ FS D +L++GS D +I +WD+
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL 94
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
+ + K ++ + ++ ++ASSSLDGT KLWD+ T
Sbjct: 95 DNGEKLIKSLEGLHDSSVSK-----------LALSSPDGNSILLASSSLDGTVKLWDLST 143
Query: 442 -MCCFYTLKNHEDEVLDIAFDYSGSKLATASS-DQTANLWTVGGAVELLQTFYGHSNEVS 499
TL+ H + V +AF G LA+ SS D T LW + + L T GH++ VS
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVS 202
Query: 500 KVLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
+AF G +A+ SSD T +LW + L T GHS+ V SF P G L+ S
Sbjct: 203 ---SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLAS 258
Query: 559 GSQDTTCRLWSTESG-ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
GS D T RLW S ++ L H V S F+ +G + + S D T +W
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 69.0 bits (168), Expect = 4e-12
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 12/176 (6%)
Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
R H P+ L S+ C ++ S +ASS+ +G ++WDV +K HE V
Sbjct: 520 RDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579
Query: 457 DIAFDYSGSK---LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF-DYSGSK 512
I DYS + LA+ S D + LW++ V + G + + + F SG
Sbjct: 580 SI--DYSSADPTLLASGSDDGSVKLWSINQGVSI-----GTIKTKANICCVQFPSESGRS 632
Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
LA S+D + + L T GHS VS V F + LV S S D T +LW
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLW 687
Score = 52.0 bits (124), Expect = 8e-07
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 22/160 (13%)
Query: 285 KILTGSFDKTLKLWASAKEECIQTYRGHSAEV----TFSPDQSTFCSCSMDHTARIFNTN 340
++ + +F+ +++W A+ + + + H V S D + S S D + ++++ N
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 341 SGQEMHTLKAHTGPVISLQFSSDRNM-LITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
G + T+K + +QF S+ L GS D + +D+ R
Sbjct: 607 QGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDL---------------RNP 650
Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV 439
P+ + GHS+ +S F S++++ SSS D T KLWD+
Sbjct: 651 KLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDL 689
Score = 46.2 bits (109), Expect = 5e-05
Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 38/279 (13%)
Query: 173 FAQRYEKFKMLKSHLLPLTN----ITFDKFGTRCLTGSYDRTCKLWD----IKSGHEICT 224
F++ K + + LL +N I FD+ G T ++ K+++ IK G +I
Sbjct: 465 FSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI-- 522
Query: 225 YRGHQNVVYAVAFSEPYGCLTGSY----------DRTCKLWDIKSGHEICTYRGHQNVVY 274
H VV + S+ G SY + ++WD+ + + H+ V+
Sbjct: 523 ---HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579
Query: 275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--AEVTFSPDQS-TFCSCSMD 331
++ +S + +GS D ++KLW+ + I T + + V F + + S D
Sbjct: 580 SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639
Query: 332 HTARIFN-TNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390
H ++ N + T+ H+ V ++F D + L++ S D+++ +WD+ N
Sbjct: 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISGIN- 697
Query: 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429
P+H GH+ + + S+ IA+ S
Sbjct: 698 ---------ETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727
Score = 35.4 bits (81), Expect = 0.093
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV---SKVLDI 504
L N + V I FD G ATA ++ ++ ++ + + E+ SK+ I
Sbjct: 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGI 538
Query: 505 AFD-YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV---SFHPTGKLVLSGS 560
++ Y S++A+++ + ++W V + +L+ H V + S PT L+ SGS
Sbjct: 539 CWNSYIKSQVASSNFEGVVQVWDVARS-QLVTEMKEHEKRVWSIDYSSADPT--LLASGS 595
Query: 561 QDTTCRLWSTESGECIQVLK 580
D + +LWS G I +K
Sbjct: 596 DDGSVKLWSINQGVSIGTIK 615
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 61.8 bits (150), Expect = 5e-10
Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 501 VLDIAFD-YSGSKLATASSDQTAKLWTVGGAVELLQT--------FYGHSNEVSKVSFHP 551
++D+AF+ + KL TAS D T W + E L GH+ +V VSFHP
Sbjct: 78 IIDVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNISDPIVHLQGHTKKVGIVSFHP 135
Query: 552 TGKLVL-SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
+ VL S D +W E G+ ++V+K H D + S +N +G + T SKD
Sbjct: 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191
Score = 57.6 bits (139), Expect = 9e-09
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)
Query: 353 GPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
GP+I + F+ D L T S D +I+ W I E + PI L GH++
Sbjct: 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIP---------EEGLTQNISDPIVHLQGHTK 126
Query: 412 EISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA 470
++ F+ S +++AS+ D +WDV +K H D++ + ++ GS L T
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186
Query: 471 SSDQTANL 478
S D+ N+
Sbjct: 187 SKDKKLNI 194
Score = 44.5 bits (105), Expect = 1e-04
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 21/162 (12%)
Query: 452 EDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQT--------FYGHSNEVSKVL 502
E ++D+AF+ + KL TAS D T W + E L GH+ KV
Sbjct: 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNISDPIVHLQGHTK---KVG 129
Query: 503 DIAFDYSGSK-LATASSDQTAKLWTV--GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
++F S LA+A +D +W V G AVE+++ HS++++ + ++ G L+ +
Sbjct: 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---HSDQITSLEWNLDGSLLCTT 186
Query: 560 SQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTIIT 600
S+D + G + ++AH C + D IIT
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228
Score = 34.9 bits (80), Expect = 0.15
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 227 GHQNVVYAVAFS--EPYGCLTGSYDRTCKLWDIKS-------GHEICTYRGHQNVVYAVA 277
G + + VAF+ +P T S D T W I I +GH V V+
Sbjct: 73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVS 132
Query: 278 FSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTA 334
F + + + D + +W + + ++ + HS ++T ++ D S C+ S D
Sbjct: 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKL 192
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDR-NMLITGSFDSS----IVVWDIQ 382
I + G + +++AH + R +++IT S I++WD +
Sbjct: 193 NIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245
Score = 30.6 bits (69), Expect = 2.9
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 17/94 (18%)
Query: 348 LKAHTGPVISLQF-SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
L+ HT V + F S N+L + D + VWD++ K + ++
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE----------------RGKAVEVI 164
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR 440
HS +I++ +N S++ ++S D + D R
Sbjct: 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 50.8 bits (122), Expect = 1e-08
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
SG+ + TLK HTGPV S+ FS D L +GS D +I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 47.7 bits (114), Expect = 1e-07
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
ELL+T GH+ V+ V+F P GK + SGS D T +LW
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 46.5 bits (111), Expect = 4e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
SGE ++ LK H V S F+ +G + + S D T +W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 45.0 bits (107), Expect = 1e-06
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
SG + T +GH V +VAFS P G + +GS D T+KLW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLW 39
Score = 44.6 bits (106), Expect = 2e-06
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 399 SHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
S + + L GH+ +++ F+ +AS S DGT KLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 441 TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
+ TLK H V +AF G LA+ S D T LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 41.5 bits (98), Expect = 2e-05
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 218 SGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWD 256
SG + T +GH V +VAFS P G +GS D T KLWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 304 ECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFN 338
E ++T +GH+ VT FSPD S S D T ++++
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 38.8 bits (91), Expect = 2e-04
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
ELL+T GH+ V+ +AF G LA+ S D T KLW
Sbjct: 3 ELLKTLKGHTGPVT---SVAFSPDGKYLASGSDDGTIKLW 39
Score = 36.1 bits (84), Expect = 0.002
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWD 215
E K LK H P+T++ F G +GS D T KLWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 50.0 bits (120), Expect = 2e-08
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 342 GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
G+ + TLK HTGPV S+ FS D N+L +GS D ++ VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 49.3 bits (118), Expect = 3e-08
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
+LL+T GH+ V+ V+F P G L+ SGS D T R+W
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 45.4 bits (108), Expect = 8e-07
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
G+ ++ LK H V S F+ +G+ + + S D T +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 45.4 bits (108), Expect = 9e-07
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
K + L GH+ +++ F+ +++AS S DGT ++WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 42.3 bits (100), Expect = 9e-06
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
G + T +GH V +VAFS P G+ + +GS D T+++W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVW 38
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 442 MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
TLK H V +AF G+ LA+ S D T +W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 41.6 bits (98), Expect = 2e-05
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 303 EECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFN 338
+ ++T +GH+ VT FSPD + S S D T R+++
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 40.8 bits (96), Expect = 4e-05
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
+LL+T GH+ V+ +AF G+ LA+ S D T ++W
Sbjct: 2 KLLRTLKGHTGPVT---SVAFSPDGNLLASGSDDGTVRVW 38
Score = 40.0 bits (94), Expect = 8e-05
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 219 GHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWD 256
G + T +GH V +VAFS L +GS D T ++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWD 215
LK H P+T++ F G +GS D T ++WD
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 48.0 bits (114), Expect = 1e-05
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 348 LKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
LK HT ++ LQF+ +L +GS D +I VW+I + + + + P IL
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN--------DESVKEIKDPQCIL 121
Query: 407 TGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDV 439
GH ++IS +N N I SS D +WD+
Sbjct: 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 29.1 bits (65), Expect = 9.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 310 RGHSA---EVTFSPDQS-TFCSCSMDHTARIF----NTNSGQEMH----TLKAHTGPVIS 357
+GH++ ++ F+P S S S D T R++ N S +E+ LK H +
Sbjct: 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130
Query: 358 LQFSS-DRNMLITGSFDSSIVVWDIQ 382
+ ++ + ++ + FDS + +WDI+
Sbjct: 131 IDWNPMNYYIMCSSGFDSFVNIWDIE 156
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 33.1 bits (76), Expect = 0.40
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 292 DKTLKLWASAKEECIQTY------RGHSAEVTFSPDQSTFCSC-SMDHTARIFNTNSGQE 344
D T+ + +A E +T+ RG +TFS D C S T ++ + +G+
Sbjct: 10 DNTISVIDTATLEVTRTFPVGQRPRG----ITFSKDGKLLYVCASDSDTVQVIDPATGEV 65
Query: 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393
+HTL + P + + + + I D+ + V DI+ TR AE
Sbjct: 66 LHTLPSGPDPELFALHPNGKILYIANEDDALVTVIDIE----TRKVLAE 110
>gnl|CDD|221182 pfam11715, Nup160, Nucleoporin Nup120/160. Nup120 is conserved
from fungi to plants to humans, and is homologous with
the Nup160 of vertebrates. The nuclear core complex, or
NPC, mediates macromolecular transport across the
nuclear envelope. Deletion of the NUP120 gene causes
clustering of NPCs at one side of the nuclear envelope,
moderate nucleolar fragmentation and slower cell growth.
The vertebrate NPC is estimated to contain between 30
and 60 different proteins. most of which are not known.
Two important ones in creating the nucleoporin basket
are Nup98 and Nup153, and Nup120, in conjunction with
Nup 133, interacts with these two and itself plays a
role in mRNA export. Nup160, Nup133, Nup96, and Nup107
are all targets of phosphorylation. The phosphorylation
sites are clustered mainly at the N-terminal regions of
these proteins, which are predicted to be natively
disordered. The entire Nup107-160 subcomplex is stable
throughout the cell cycle, thus it seems unlikely that
phosphorylation affects interactions within the
Nup107-160 subcomplex, but rather that it regulates the
association of the subcomplex with the NPC and other
proteins.
Length = 511
Score = 33.2 bits (76), Expect = 0.47
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 422 NSMIASSSLDGTAKLWDVRTMCCFYT 447
+ + + SLDGT ++W++ T C +
Sbjct: 232 QTFLFTLSLDGTLRVWNLDTGQCAFL 257
>gnl|CDD|181186 PRK07983, PRK07983, exodeoxyribonuclease X; Provisional.
Length = 219
Score = 31.2 bits (71), Expect = 1.1
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 38 AFDKSVFPPLSFQFITTMKLLRFLLRYYPPGI 69
+FD+ V P + ++I TMKL R L PGI
Sbjct: 83 SFDRRVLPEMPGEWICTMKLARRLW----PGI 110
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 30.9 bits (70), Expect = 2.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 12/46 (26%)
Query: 448 LKNHEDE----VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489
L+N D+ VL ++FDY ++L TA + VG V L
Sbjct: 199 LENRPDDRLLAVLPLSFDYGFNQLTTA--------FYVGATVVLHD 236
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.5 bits (67), Expect = 2.1
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 154 VITQLEQSIMKLQKKLKEGFAQRYEKFKMLK 184
+ Q E+ + + +++ +E Q +K + L
Sbjct: 67 ELEQAEKQVEQAREQWQEAN-QERKKLEKLL 96
>gnl|CDD|206557 pfam14389, Lzipper-MIP1, Leucine-zipper of ternary complex factor
MIP1. This leucine-zipper is towards the N-terminus of
MIP1 proteins. These proteins, here largely from plants,
are subunits of the TORC2 (rictor-mTOR) protein complex
controlling cell growth and proliferation. The
leucine-zipper is likely to be the region that interacts
with plant MADS-box factors,.
Length = 88
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 155 ITQLEQSIMKLQKKLKEGFAQR 176
+ LEQ + KLQK+L++ R
Sbjct: 10 RSALEQEVAKLQKQLQQEEDLR 31
>gnl|CDD|183035 PRK11199, tyrA, bifunctional chorismate mutase/prephenate
dehydrogenase; Provisional.
Length = 374
Score = 30.2 bits (69), Expect = 2.9
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 9/39 (23%)
Query: 343 QEMHTLKAHTGPVISLQ--FSSDRNMLITGSFDSSIVVW 379
Q M L AH+GPV+ L F D GS +VV
Sbjct: 183 QAM--LAAHSGPVLGLHPMFGPD-----VGSLAKQVVVV 214
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 29.9 bits (68), Expect = 4.2
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 47 LSFQFITTMKLLRF--LLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLE 98
+S + M L R L+ Y P +TL +T G I I L + F G+ +
Sbjct: 111 MSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGI---VIATLQIKDFFGLQMA 161
>gnl|CDD|224387 COG1470, COG1470, Predicted membrane protein [Function unknown].
Length = 513
Score = 29.8 bits (67), Expect = 5.7
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 99 YTQGKDIKMKTIDLLDLDENSYCYL---SFKTFLFFSSSNVSEITKQVYSKEPL-ITASV 154
QG +IK + + E + L + + FS V T VY+ EPL IT +
Sbjct: 30 LYQGIEIKGLKLRPKESVELQFKVLPGKAGSYSVKFSIEGVPYWTVNVYTSEPLQITLPI 89
Query: 155 ITQLEQSIMKLQ 166
Q ++ +K++
Sbjct: 90 EAQEAEAGLKVR 101
>gnl|CDD|223965 COG1034, NuoG, NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75
kD subunit (chain G) [Energy production and conversion].
Length = 693
Score = 29.7 bits (67), Expect = 6.1
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 22/83 (26%)
Query: 200 TRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVA----FSE---------PYGCLT 245
TRC+ R CK +I HE+ RG + + SE P G LT
Sbjct: 150 TRCV-----RFCK--EIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALT 202
Query: 246 G-SYDRTCKLWDIKSGHEICTYR 267
+ T + W++K IC +
Sbjct: 203 SKPFAFTARKWELKKTPSICVHC 225
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 28.9 bits (66), Expect = 7.6
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 148 PLITASVITQLEQSIM-KLQKKLKEG 172
P ITAS+I QL ++ KL++ KEG
Sbjct: 79 PYITASIIMQLLTVVIPKLEELKKEG 104
>gnl|CDD|222647 pfam14282, FlxA, FlxA-like protein. This family includes FlxA from
E. coli. The expression of FlxA is regulated by the FliA
sigma factor, a transcription factor specific for class
3 flagellar operons. However FlxA is not required for
flagellar function or formation.
Length = 106
Score = 27.4 bits (61), Expect = 7.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 134 SNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKE 171
S+VS + S + S I L++ I L K+LKE
Sbjct: 1 SSVSASSTS-SSASSGSSDSQIKSLQKQIQSLTKQLKE 37
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and
thus affects blood pressure. Renin, also known as
angiotensinogenase, is a circulating enzyme that
participates in the renin-angiotensin system that
mediates extracellular volume, arterial
vasoconstriction, and consequently mean arterial blood
pressure. The enzyme is secreted by the kidneys from
specialized juxtaglomerular cells in response to
decreases in glomerular filtration rate (a consequence
of low blood volume), diminished filtered sodium
chloride and sympathetic nervous system innervation. The
enzyme circulates in the blood stream and hydrolyzes
angiotensinogen secreted from the liver into the peptide
angiotensin I. Angiotensin I is further cleaved in the
lungs by endothelial bound angiotensin converting enzyme
(ACE) into angiotensin II, the final active peptide.
Renin is a member of the aspartic protease family.
Structurally, aspartic proteases are bilobal enzymes,
each lobe contributing a catalytic Aspartate residue,
with an extended active site cleft localized between the
two lobes of the molecule. The N- and C-terminal
domains, although structurally related by a 2-fold axis,
have only limited sequence homology except the vicinity
of the active site. This suggests that the enzymes
evolved by an ancient duplication event. The active site
is located at the groove formed by the two lobes, with
an extended loop projecting over the cleft to form an
11-residue flap, which encloses substrates and
inhibitors in the active site. Specificity is determined
by nearest-neighbor hydrophobic residues surrounding the
catalytic aspartates, and by three residues in the flap.
The enzymes are mostly secreted from cells as inactive
proenzymes that activate autocatalytically at acidic pH.
This family of aspartate proteases is classified by
MEROPS as the peptidase family A1 (pepsin A, clan AA).
Length = 326
Score = 28.6 bits (64), Expect = 8.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
+G+ + + + L GA E L + NEV + DI+F G + +SSD
Sbjct: 214 TGASFISGPTSSISKLMEALGAKERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSD 270
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 28.6 bits (65), Expect = 9.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 9/39 (23%)
Query: 148 PLITASVITQLEQ----SIMKLQKKLKEG-----FAQRY 177
P ITAS+I QL + KL K+ +EG RY
Sbjct: 9 PYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRY 47
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.407
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,572,726
Number of extensions: 2743771
Number of successful extensions: 2351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2194
Number of HSP's successfully gapped: 70
Length of query: 616
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 513
Effective length of database: 6,369,140
Effective search space: 3267368820
Effective search space used: 3267368820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)