Query psy3641
Match_columns 202
No_of_seqs 210 out of 700
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:54:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4304|consensus 100.0 5.9E-30 1.3E-34 224.2 7.4 99 47-202 29-129 (250)
2 PF00010 HLH: Helix-loop-helix 99.5 1.7E-14 3.7E-19 98.3 3.7 54 51-105 2-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.4 1.9E-13 4.1E-18 93.2 4.8 56 50-108 4-59 (60)
4 KOG1318|consensus 99.4 1.8E-13 3.8E-18 127.5 2.5 67 48-116 231-297 (411)
5 smart00353 HLH helix loop heli 99.3 2.4E-12 5.3E-17 86.3 6.3 51 55-108 1-51 (53)
6 KOG1319|consensus 99.0 2.2E-10 4.8E-15 98.0 3.1 63 49-111 61-124 (229)
7 KOG3561|consensus 98.9 8.2E-10 1.8E-14 110.2 5.5 55 51-107 21-75 (803)
8 PF07527 Hairy_orange: Hairy O 98.7 6.5E-09 1.4E-13 68.6 2.8 24 179-202 1-24 (43)
9 smart00511 ORANGE Orange domai 98.6 4E-08 8.7E-13 65.1 2.6 24 179-202 1-24 (45)
10 KOG2588|consensus 98.3 9E-07 1.9E-11 89.6 5.9 104 48-157 274-389 (953)
11 KOG2483|consensus 97.7 4.4E-05 9.5E-10 67.1 5.3 59 48-109 57-115 (232)
12 KOG0561|consensus 97.6 8.2E-05 1.8E-09 68.1 4.4 53 54-110 64-116 (373)
13 KOG3560|consensus 97.4 0.0001 2.3E-09 71.7 3.2 48 54-103 29-76 (712)
14 KOG4029|consensus 97.4 0.00012 2.6E-09 63.0 2.8 59 51-111 110-168 (228)
15 KOG3960|consensus 97.3 0.00029 6.4E-09 63.0 5.0 58 49-110 117-174 (284)
16 PLN03217 transcription factor 96.7 0.0034 7.4E-08 48.0 5.2 50 62-111 19-68 (93)
17 KOG3910|consensus 95.0 0.027 5.9E-07 54.8 4.3 61 48-110 524-584 (632)
18 KOG3558|consensus 94.2 0.025 5.3E-07 56.8 1.9 49 56-107 52-100 (768)
19 KOG4395|consensus 91.0 0.28 6.1E-06 44.3 3.9 61 47-110 171-231 (285)
20 KOG3559|consensus 89.0 0.4 8.7E-06 46.2 3.5 45 57-103 8-52 (598)
21 KOG3898|consensus 79.2 1.2 2.7E-05 39.5 1.9 56 50-108 72-127 (254)
22 KOG4447|consensus 73.6 1.6 3.5E-05 36.9 1.0 55 51-109 79-133 (173)
23 KOG3582|consensus 47.0 6 0.00013 40.5 -0.2 61 49-110 650-710 (856)
24 PF12644 DUF3782: Protein of u 37.8 30 0.00065 23.7 2.2 17 176-192 46-62 (64)
25 PRK13702 replication protein; 27.8 1.3E+02 0.0028 23.0 4.4 47 54-100 24-77 (85)
26 PF08269 Cache_2: Cache domain 21.3 2.1E+02 0.0046 20.6 4.5 48 59-106 6-53 (95)
No 1
>KOG4304|consensus
Probab=99.96 E-value=5.9e-30 Score=224.24 Aligned_cols=99 Identities=30% Similarity=0.655 Sum_probs=85.3
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccC--CCCCcHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCcccc
Q psy3641 47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKG--RGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLE 124 (202)
Q Consensus 47 ~r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~--~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~~~~~~a~q 124 (202)
.-.||++|+++|||||||||+||++||+||++++.+++ ..|||||+|||+||+|||.|+........
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~----------- 97 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQ----------- 97 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccccc-----------
Confidence 34689999999999999999999999999999998874 59999999999999999999988633210
Q ss_pred cccccccccccccccCccccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641 125 NSQMLDNYDQDSKVSGKEETSEHNPSKPTENSSSITELDPNKPEGEGSPAPINLEHFKLGYQECLSESMHYLVEVKGY 202 (202)
Q Consensus 125 ~~q~l~~~~~d~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~y~~Gf~eC~~Ev~rfL~~~~G~ 202 (202)
+ .++....+.|++||.+|+.||+|||+.|||+
T Consensus 98 ----------~------------------------------------~~~~~~~d~f~~Gf~ec~~EVsr~ls~~~~~ 129 (250)
T KOG4304|consen 98 ----------A------------------------------------APAALPVDSFRAGFRECAAEVSRYLSICPGM 129 (250)
T ss_pred ----------c------------------------------------ccccccchhhhccHHHHHHHHHHHHhhCCCC
Confidence 0 0234678999999999999999999999996
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.49 E-value=1.7e-14 Score=98.32 Aligned_cols=54 Identities=33% Similarity=0.597 Sum_probs=47.8
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhH
Q psy3641 51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105 (202)
Q Consensus 51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq 105 (202)
+..|+..||+||++||.+|++|+.+||.+. .....|++|++||+.||+||+.||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~-~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCS-AGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHH-CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchh-ccccccCCHHHHHHHHHHHHHHhC
Confidence 346999999999999999999999999863 123689999999999999999986
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=1.9e-13 Score=93.18 Aligned_cols=56 Identities=29% Similarity=0.536 Sum_probs=50.4
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
++..|+..||+||++||.+|++|+.+||... ...|++|++||++||+||+.|+...
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~---~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLP---PSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999999999754 2589999999999999999999864
No 4
>KOG1318|consensus
Probab=99.37 E-value=1.8e-13 Score=127.54 Aligned_cols=67 Identities=22% Similarity=0.349 Sum_probs=58.1
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccCCCCCC
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNAN 116 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~ 116 (202)
|.||.+|++||||||+.||++|.+|..|||.|.. ...|+.|+.||..+|+||+.|++...+..+.++
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~--~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~ 297 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNS--EDMKSNKGTILKASCDYIRELQQTLQRARELEN 297 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCc--chhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999999876 378999999999999999999998775433333
No 5
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=2.4e-12 Score=86.32 Aligned_cols=51 Identities=29% Similarity=0.528 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 55 RIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 55 ~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
+..||+||++||.+|.+|+.|||.+. ...|++|++||.+||+||+.|+...
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~---~~~k~~k~~iL~~ai~yi~~L~~~~ 51 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLP---NNKKLSKAEILRLAIEYIKSLQEEL 51 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999764 3689999999999999999999875
No 6
>KOG1319|consensus
Probab=98.99 E-value=2.2e-10 Score=98.01 Aligned_cols=63 Identities=22% Similarity=0.390 Sum_probs=56.6
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccC-CCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKG-RGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~-~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
.||..|...|++||+-||..++.|+.|||.|...+. ..|+.||-||..||+||.+|+++..+.
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kq 124 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQ 124 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999988764 459999999999999999999988764
No 7
>KOG3561|consensus
Probab=98.94 E-value=8.2e-10 Score=110.16 Aligned_cols=55 Identities=29% Similarity=0.537 Sum_probs=50.9
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641 51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107 (202)
Q Consensus 51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~ 107 (202)
+.+|+.+||||||++|..|.||.+|||.|.. ...|+||.+||++||+|||.++..
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~--~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNAS--LSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchh--cccCchHHHHHHHHHHHHHHHhhh
Confidence 4579999999999999999999999999875 469999999999999999999886
No 8
>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family. HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.
Probab=98.74 E-value=6.5e-09 Score=68.56 Aligned_cols=24 Identities=38% Similarity=0.884 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641 179 EHFKLGYQECLSESMHYLVEVKGY 202 (202)
Q Consensus 179 ~~y~~Gf~eC~~Ev~rfL~~~~G~ 202 (202)
++|++||++|+.||+|||+.++|+
T Consensus 1 ~~y~~Gy~~C~~Ev~~fL~~~~~~ 24 (43)
T PF07527_consen 1 QKYRAGYSECLNEVSRFLSSVEGV 24 (43)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTS--
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999999985
No 9
>smart00511 ORANGE Orange domain. This domain confers specificity among members of the Hairy/E(SPL) family.
Probab=98.56 E-value=4e-08 Score=65.11 Aligned_cols=24 Identities=33% Similarity=0.775 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCC
Q psy3641 179 EHFKLGYQECLSESMHYLVEVKGY 202 (202)
Q Consensus 179 ~~y~~Gf~eC~~Ev~rfL~~~~G~ 202 (202)
++|++||.+|+.||++||+.++|+
T Consensus 1 ~~y~~Gy~~C~~Ev~~fLs~~~~~ 24 (45)
T smart00511 1 SSFRSGYRECANEVSRFLSQLPGT 24 (45)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999999884
No 10
>KOG2588|consensus
Probab=98.30 E-value=9e-07 Score=89.58 Aligned_cols=104 Identities=27% Similarity=0.396 Sum_probs=73.4
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccCCCCCCCCCC--ccccc
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRTPNANPSNE--LPLEN 125 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~~~~~~~~~~--~a~q~ 125 (202)
.++|++|++||||-|--||+.|.|||.+||.. ..|+.|..+|..|++||++++........ .+.+.+ -+++.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-----~aKl~kSavLr~ai~~i~dl~~~nq~lk~-~~~~l~t~k~~k~ 347 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGT-----EAKLNKSAVLRKAIDYIEDLQGYNQKLKL-ENASLRTPKALKY 347 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCcc-----HhhhhhhhhHHHHHHHHHHhhccccccch-hhhhhhhHHHHhh
Confidence 37899999999999999999999999999963 68999999999999999999998776532 222223 23344
Q ss_pred ccccccccccccccCccc--------cCCC--CCCCCCCCCC
Q psy3641 126 SQMLDNYDQDSKVSGKEE--------TSEH--NPSKPTENSS 157 (202)
Q Consensus 126 ~q~l~~~~~d~~~~g~~~--------~~~~--~p~~~~~~~~ 157 (202)
.-.+...+.-..++|... ...+ .|+||...++
T Consensus 348 ~~~lk~~~~~~~~~~~~~~~~~s~r~s~~~~~~pSpP~SD~s 389 (953)
T KOG2588|consen 348 IRLLKAKDISLKLSLNDQLKEESVRSSFTNDGEPSPPPSDSS 389 (953)
T ss_pred hcchhhhhhhhcCcchhhHHhhhhhhhcccCCCCCCCccccC
Confidence 444443332223333322 1223 6777776666
No 11
>KOG2483|consensus
Probab=97.75 E-value=4.4e-05 Score=67.13 Aligned_cols=59 Identities=24% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhc
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVC 109 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~ 109 (202)
...+..|+..||+|||.|-.||..|+.+||.... ..+-.-+.||..|+.||+.|+....
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~---~~~~t~lsiL~kA~~~i~~l~~~~~ 115 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG---ETRSTTLSILDKALEHIQSLERKSA 115 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC---cchhhhhHhhhhHHHHHHHHHhHHH
Confidence 3456789999999999999999999999996432 2233379999999999999987754
No 12
>KOG0561|consensus
Probab=97.56 E-value=8.2e-05 Score=68.07 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=47.0
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 54 HRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 54 h~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
-+-.||||---||..|..|++|||... ..||+||-||+.|.+||-.|.++...
T Consensus 64 ANsNERRRMQSINAGFqsLr~LlPr~e----GEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 64 ANSNERRRMQSINAGFQSLRALLPRKE----GEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred hcchHHHHHHhhhHHHHHHHHhcCccc----chhhHHHHHHHHHHHHHHHHHhcccc
Confidence 456799999999999999999999743 68999999999999999999887644
No 13
>KOG3560|consensus
Probab=97.41 E-value=0.0001 Score=71.74 Aligned_cols=48 Identities=23% Similarity=0.427 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q psy3641 54 HRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKY 103 (202)
Q Consensus 54 h~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~ 103 (202)
++-=-||-|||+|..|+-|.+|+|= ..+..+||||.+||+++|.||+.
T Consensus 29 kSNPSKRHRdRLNaELD~lAsLLPf--pqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 29 KSNPSKRHRDRLNAELDHLASLLPF--PQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred cCCcchhHHHHhhhHHHHHHHhcCC--CHHHHhhhhhhhhhhhhHHHHHH
Confidence 3444588999999999999999984 33457999999999999999985
No 14
>KOG4029|consensus
Probab=97.36 E-value=0.00012 Score=63.02 Aligned_cols=59 Identities=22% Similarity=0.454 Sum_probs=50.6
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
+...+..||.|=.-+|.++.+|+.+||..... ..|++|.++|..||.||+.|+......
T Consensus 110 ~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~--~kklSKveTLr~A~~YI~~L~~lL~~~ 168 (228)
T KOG4029|consen 110 RQARNARERQRVQSVNSAFAELRALLPTEPPQ--SKKLSKVETLRLATSYIRYLTKLLATQ 168 (228)
T ss_pred hhhhhhhhhhcccchhhhhHHHHhcCCCCCCc--ccccCcccchHHHHHHHHHHHHHhccc
Confidence 44566779999999999999999999975531 789999999999999999999987654
No 15
>KOG3960|consensus
Probab=97.34 E-value=0.00029 Score=62.97 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=48.8
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
+|+..-.+-||||=.++|+.|..||.=--. ....+|-|.+||+.||+||..||.-.+.
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~----NPNQRLPKVEILRsAI~YIE~Lq~LL~~ 174 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSS----NPNQRLPKVEILRSAIRYIERLQALLQE 174 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----CccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 567778899999999999999999975321 1478999999999999999999887654
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.73 E-value=0.0034 Score=48.03 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=43.1
Q ss_pred HHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 62 RDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 62 RdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
-|-||+-+..|+.|+|+....-...|..-+.||+.|..||+.|++++...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL 68 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL 68 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998754235679999999999999999999998543
No 17
>KOG3910|consensus
Probab=95.04 E-value=0.027 Score=54.81 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=50.5
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
+||++..+.-||-|=.-||+.|.||-+|.-.... ...-..|.-||-+||.-|-.|.+++..
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlk--SeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLK--SEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhc--ccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4677888888988877799999999999754332 456688999999999999999999853
No 18
>KOG3558|consensus
Probab=94.22 E-value=0.025 Score=56.80 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641 56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107 (202)
Q Consensus 56 ~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~ 107 (202)
-.-|-||-+=|.-|.||+.+||-.. ...+.||||+|+++||.||| |++-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~--aisshLDkaSimRLtISyLR-lrk~ 100 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPA--AISSHLDKASIMRLTISYLR-LRKF 100 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcc--hhhhhhhhHHHHHHHHHHHH-HHHH
Confidence 3567899999999999999999422 23689999999999999998 4443
No 19
>KOG4395|consensus
Probab=90.95 E-value=0.28 Score=44.31 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=51.1
Q ss_pred CCCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 47 ~r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
++.|+..-+..|+||-.-+|..|+.|+..||.-. ...||+|-+.|.|+-.||--|-.....
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~---~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGD---SDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCC---ccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 3456677889999999999999999999999632 368999999999999999988776543
No 20
>KOG3559|consensus
Probab=88.97 E-value=0.4 Score=46.21 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHH
Q psy3641 57 IEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKY 103 (202)
Q Consensus 57 iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~ 103 (202)
..|.||++=|-.+.||..|+|-+.. -.+.+||++|+++|-.|||.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~A--ItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASA--ITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhh--hhhccchhhhhhHHHHHHHH
Confidence 3577999999999999999997544 24569999999999999995
No 21
>KOG3898|consensus
Probab=79.16 E-value=1.2 Score=39.51 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=45.2
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
|+..-+.-||+|---+|+.|+.|+.+||- +. ...|+.|.+.|..+=.||-.|....
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~-~~--~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPH-GL--HPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccC-cC--CCCCCCcchhHHhhhcchhhhcccc
Confidence 34445566777777789999999999994 32 2789999999999999999988654
No 22
>KOG4447|consensus
Probab=73.58 E-value=1.6 Score=36.94 Aligned_cols=55 Identities=20% Similarity=0.435 Sum_probs=48.6
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhc
Q psy3641 51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVC 109 (202)
Q Consensus 51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~ 109 (202)
+..|++.|++|=--+|+.|..|+.++|.. ...|++|.--|+.|-.||-.|-+...
T Consensus 79 rv~anvrerqRtqsLn~AF~~lr~iiptl----PsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 79 RVMANVRERQRTQSLNEAFAALRKIIPTL----PSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhcCCC----CccccccccchhhcccCCchhhhccc
Confidence 46799999999999999999999999963 37899999999999999998877653
No 23
>KOG3582|consensus
Probab=46.98 E-value=6 Score=40.49 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=51.5
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
-|.+.|+-.|.+||..|-.+++-|-.++- |...-...|+.++.-|..+|.||-.++....-
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~S-n~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~ 710 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSS-NSSSLSSIKTTNSNSLQKTVHYINVTQQERVP 710 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhcc-CcccccchhhhccccccCceeeeeccchhccc
Confidence 56789999999999999999999988885 44433468999999999999999988877644
No 24
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=37.85 E-value=30 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHH
Q psy3641 176 INLEHFKLGYQECLSES 192 (202)
Q Consensus 176 ~~~~~y~~Gf~eC~~Ev 192 (202)
..-..|+.||.+|+...
T Consensus 46 ~~e~afr~G~~d~l~~~ 62 (64)
T PF12644_consen 46 ESEEAFRQGFRDGLRLL 62 (64)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46789999999999763
No 25
>PRK13702 replication protein; Provisional
Probab=27.80 E-value=1.3e+02 Score=23.04 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=33.7
Q ss_pred cchHHHHH--HHHHHHhHHHHHhhhhhhhhcc-----CCCCCcHHHHHHHHHHH
Q psy3641 54 HRIIEKRR--RDRMNNCLADLSRLIPADYLKK-----GRGRIEKTEIIEMAIKH 100 (202)
Q Consensus 54 h~~iEKrR--RdRIN~~L~eLk~LvP~~~~~~-----~~~KleKA~ILe~TV~y 100 (202)
.+..||.| .+|.-....+|+-+|+...... ....+..|++||.-|+-
T Consensus 24 ls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe~ 77 (85)
T PRK13702 24 LSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIER 77 (85)
T ss_pred CCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 55677776 5677777888888887654321 25789999999987763
No 26
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.28 E-value=2.1e+02 Score=20.55 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHH
Q psy3641 59 KRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106 (202)
Q Consensus 59 KrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~ 106 (202)
+.|++.|-..++....+|-.........++++.+.-+++.++|+.++=
T Consensus 6 ~~~k~~l~~~v~~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~ 53 (95)
T PF08269_consen 6 EERKEQLKNVVESAISLIESYYAQAQAGKLSEEEAQQQAREALRALRY 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHC-STT-----TTHHHHHHHHHH--S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc
Confidence 344445555555555555433332235789999999999999987764
Done!