Query psy3641
Match_columns 202
No_of_seqs 210 out of 700
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a0a_A BHLH, protein (phosphat 99.8 9.2E-19 3.2E-23 123.6 5.8 59 50-108 2-61 (63)
2 4h10_A ARYL hydrocarbon recept 99.7 2.9E-18 1E-22 124.5 2.9 56 50-107 9-64 (73)
3 1an4_A Protein (upstream stimu 99.7 2.5E-17 8.4E-22 115.7 3.2 61 48-108 3-63 (65)
4 4h10_B Circadian locomoter out 99.7 4.6E-17 1.6E-21 117.9 3.9 55 50-109 8-62 (71)
5 4ati_A MITF, microphthalmia-as 99.6 8.6E-16 2.9E-20 120.2 3.9 62 48-111 25-86 (118)
6 1am9_A Srebp-1A, protein (ster 99.5 4.4E-15 1.5E-19 109.2 3.9 56 50-110 6-61 (82)
7 1nkp_B MAX protein, MYC proto- 99.5 3.5E-14 1.2E-18 103.9 4.4 57 50-110 2-58 (83)
8 1hlo_A Protein (transcription 99.4 7.4E-14 2.5E-18 101.8 4.3 57 50-110 12-68 (80)
9 3u5v_A Protein MAX, transcript 99.4 6.3E-13 2.2E-17 97.0 6.8 62 48-111 3-64 (76)
10 1nkp_A C-MYC, MYC proto-oncoge 99.3 4.3E-13 1.5E-17 100.0 3.9 57 51-110 7-63 (88)
11 4f3l_A Mclock, circadian locom 99.3 2.6E-12 9E-17 113.5 5.8 56 48-108 10-65 (361)
12 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 1.7E-12 6E-17 116.2 3.5 59 48-108 11-69 (387)
13 1nlw_A MAD protein, MAX dimeri 99.2 7.2E-12 2.5E-16 92.0 3.8 56 52-110 3-58 (80)
14 1mdy_A Protein (MYOD BHLH doma 99.1 2.5E-11 8.6E-16 86.9 2.0 56 49-108 11-66 (68)
15 2ql2_B Neurod1, neurogenic dif 99.0 2.3E-10 7.8E-15 79.9 3.8 54 52-108 4-57 (60)
16 4ath_A MITF, microphthalmia-as 98.9 1.8E-09 6.2E-14 80.2 5.0 49 61-111 3-51 (83)
17 2lfh_A DNA-binding protein inh 98.8 1.6E-09 5.6E-14 77.8 2.5 48 56-106 20-67 (68)
18 2db7_A Hairy/enhancer-OF-split 98.7 4.7E-09 1.6E-13 74.4 2.5 27 176-202 14-41 (64)
19 4aya_A DNA-binding protein inh 98.2 2.6E-06 8.9E-11 64.9 6.0 50 58-110 33-82 (97)
20 1p22_C Beta-catenin, Pro2286; 32.2 13 0.00044 21.8 0.5 12 4-15 8-19 (26)
21 3muj_A Transcription factor CO 32.0 60 0.002 25.7 4.6 40 64-105 95-134 (138)
22 1p3q_Q VPS9P, vacuolar protein 20.0 81 0.0028 21.1 2.8 23 56-78 3-25 (54)
No 1
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.75 E-value=9.2e-19 Score=123.64 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=53.8
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhcc-CCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKK-GRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~-~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
++.+|+++||+||+|||.+|.+|+.|||.++..+ +..|++||+||++||+||+.|++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999987654 3689999999999999999999875
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.70 E-value=2.9e-18 Score=124.54 Aligned_cols=56 Identities=36% Similarity=0.605 Sum_probs=50.9
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHh
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~ 107 (202)
++.+|+++||+||++||.+|.+|+.|||.|.. +..|+|||+||++||+||+.|+..
T Consensus 9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~--~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNA--MSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT--CSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHcccccc--ccccccHHHHHHHHHHHHHHHhcC
Confidence 45679999999999999999999999999863 468999999999999999999864
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=2.5e-17 Score=115.74 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=53.6
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
..++.+|+++||+||++||.+|.+|+.|||.+.......|++|++||++||+||+.|+.+.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999998764322369999999999999999999875
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.65 E-value=4.6e-17 Score=117.88 Aligned_cols=55 Identities=20% Similarity=0.480 Sum_probs=50.1
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhc
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVC 109 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~ 109 (202)
++.+|+++||+||++||.+|.+|++|||. ...|++|++||++||+||+.|+....
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-----~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPG-----NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSS-----CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCC-----CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 35679999999999999999999999995 35799999999999999999999863
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.57 E-value=8.6e-16 Score=120.16 Aligned_cols=62 Identities=26% Similarity=0.383 Sum_probs=49.3
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
+.++.+|+++||+||++||++|.+|+.|||.|.. ...|++|++||++||+||+.|+.+....
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~--~~~k~~Ka~IL~~aieYIk~Lq~~~~~l 86 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSND--PDMRWNKGTILKASVDYIRKLQREQQRA 86 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC--ccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999998753 2579999999999999999999887654
No 6
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.52 E-value=4.4e-15 Score=109.21 Aligned_cols=56 Identities=23% Similarity=0.452 Sum_probs=51.4
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
++.+|+++||+||++||++|.+|+.|||.+ ..|++|++||.+||+||+.|+.+...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-----~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGT-----EAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-----SCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCC-----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999973 58999999999999999999998754
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=3.5e-14 Score=103.93 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=51.2
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
++.+|+.+||+||+.||.+|++|+.+||.+. ..|++|++||.+||+||+.|+.....
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~----~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ----GEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT----TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999754 57999999999999999999987643
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.43 E-value=7.4e-14 Score=101.76 Aligned_cols=57 Identities=19% Similarity=0.422 Sum_probs=51.6
Q ss_pred CCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 50 DPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 50 rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
++.+|+.+||+||..||.+|.+|+.|||.+. ..|++|++||.+||+||+.|+.....
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~----~~k~sK~~iL~~Ai~YI~~L~~~~~~ 68 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ----GEKASRAQILDKATEYIQYMRRKNHT 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT----TSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC----CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999754 47999999999999999999988754
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.38 E-value=6.3e-13 Score=97.00 Aligned_cols=62 Identities=21% Similarity=0.325 Sum_probs=49.2
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
.+++..|+.+||+||+.||++|.+|+.+||.+.. +..+++|++||..||+||+.|+++....
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~--~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLK--SDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCC--ccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999997553 2344589999999999999999998654
No 10
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.34 E-value=4.3e-13 Score=99.99 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 51 PMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 51 k~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
+..|+++||+||+.||++|..|+.+||.... ..|++|++||..||+||+.|+.....
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~---~~K~sK~~iL~~A~~YI~~L~~~~~~ 63 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELEN---NEKAPKVVILKKATAYILSVQAEEQK 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTT---CTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999999999997532 57999999999999999999998754
No 11
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.28 E-value=2.6e-12 Score=113.52 Aligned_cols=56 Identities=20% Similarity=0.466 Sum_probs=43.6
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
+.++.+|+++|||||++||..|.+|+.|||. ..+||+|++||++||+|||.++...
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-----~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-----NARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCS-----SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-----CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 3456789999999999999999999999993 3689999999999999999988764
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.26 E-value=1.7e-12 Score=116.19 Aligned_cols=59 Identities=34% Similarity=0.594 Sum_probs=51.5
Q ss_pred CCCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 48 REDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 48 r~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
+.++.+|+.+|||||++||..|.+|+.|||.+.. ...||+|++||++||.|||.|+...
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~--~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA--MSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH--CSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCc--cccccCHHHHHHHHHHHHHHhhccc
Confidence 3346689999999999999999999999998753 4799999999999999999998543
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.20 E-value=7.2e-12 Score=91.99 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=50.3
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 52 ~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
..|+.+||+||+.||.||..|+++||.... ..|++|++||..|++||+.|+.....
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~---~~k~sk~~iL~kA~~yI~~L~~~~~~ 58 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPD---SSRHTTLSLLTKAKLHIKKLEDSDRK 58 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSS---SCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999996432 68999999999999999999998754
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.08 E-value=2.5e-11 Score=86.86 Aligned_cols=56 Identities=23% Similarity=0.409 Sum_probs=49.7
Q ss_pred CCCCCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 49 EDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 49 ~rk~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
+++..|+..||+|+..||++|+.|+.+||.. ...|++|.+||..||+||..|+...
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~----~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSN----PNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC----TTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999953 2579999999999999999999864
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.99 E-value=2.3e-10 Score=79.94 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCcchHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhh
Q psy3641 52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108 (202)
Q Consensus 52 ~sh~~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~ 108 (202)
..|+..||+|+..||.+|+.|+.+||... ...|++|.+||.+||+||..|+...
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~---~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYS---KTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCC---SSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCC---CcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999642 3689999999999999999999875
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.87 E-value=1.8e-09 Score=80.24 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhccC
Q psy3641 61 RRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111 (202)
Q Consensus 61 RRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~~ 111 (202)
-|+.||++|.+|..|||++.. ...|++|++||..||+||++|++...+.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~--~~~k~nKg~IL~ksvdYI~~Lq~e~~r~ 51 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSND--PDMRWNKGTILKASVDYIRKLQREQQRA 51 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCC--TTCCCSHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhHHHhhhhhhccCCCCCC--cccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999998754 4789999999999999999999987653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.80 E-value=1.6e-09 Score=77.76 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHH
Q psy3641 56 IIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106 (202)
Q Consensus 56 ~iEKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~ 106 (202)
.-||+|+..||.+|+.|+.+||... ...|++|.+||+.||+||..|+.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p---~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVP---RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCC---TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC---CCCCccHHHHHHHHHHHHHHHHc
Confidence 5578899999999999999999743 26899999999999999999985
No 18
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=98.71 E-value=4.7e-09 Score=74.42 Aligned_cols=27 Identities=33% Similarity=0.742 Sum_probs=24.1
Q ss_pred chhHHHH-HHHHHHHHHHhhhhhcCCCC
Q psy3641 176 INLEHFK-LGYQECLSESMHYLVEVKGY 202 (202)
Q Consensus 176 ~~~~~y~-~Gf~eC~~Ev~rfL~~~~G~ 202 (202)
...+.|+ +||++|+.||+|||+++||+
T Consensus 14 ~~~~~yrs~Gf~eC~~EV~rfLs~~eg~ 41 (64)
T 2db7_A 14 ALAMDYRSLGFRECLAEVARYLSIIEGL 41 (64)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCC
Confidence 4478899 59999999999999999986
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.18 E-value=2.6e-06 Score=64.86 Aligned_cols=50 Identities=22% Similarity=0.328 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhHHhhcc
Q psy3641 58 EKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110 (202)
Q Consensus 58 EKrRRdRIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq~~~~~ 110 (202)
|+.|-..||++|+.|+.+||... ...||+|.+||++||+||..|+.....
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p---~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIP---QNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSC---SSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC---CCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35566679999999999999643 368999999999999999999998643
No 20
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=32.16 E-value=13 Score=21.76 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=10.1
Q ss_pred cccccccCCCCC
Q psy3641 4 QNVHYLDSPLAL 15 (202)
Q Consensus 4 ~~~~~~~~~~~~ 15 (202)
||-.|+||+|++
T Consensus 8 qq~~y~DSGI~S 19 (26)
T 1p22_C 8 QQQSYLDSGIHS 19 (26)
T ss_pred hhcCcccccccc
Confidence 677899999986
No 21
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=32.00 E-value=60 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=33.3
Q ss_pred HHHHhHHHHHhhhhhhhhccCCCCCcHHHHHHHHHHHHHHhH
Q psy3641 64 RMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105 (202)
Q Consensus 64 RIN~~L~eLk~LvP~~~~~~~~~KleKA~ILe~TV~ylk~Lq 105 (202)
-|+-+++.|..+||..-.+ -.+|-|--||..+-+.+..|-
T Consensus 95 tId~gfqrl~k~~pr~pgd--pe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGD--PERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTC--CSSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCC--hhhhhHHHHHHHHHHHHHHHh
Confidence 3789999999999975431 489999999999999988764
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.00 E-value=81 Score=21.08 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhHHHHHhhhhh
Q psy3641 56 IIEKRRRDRMNNCLADLSRLIPA 78 (202)
Q Consensus 56 ~iEKrRRdRIN~~L~eLk~LvP~ 78 (202)
.++|-+|.-.++.+.+|+.|+|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 45677888889999999999996
Done!