RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3641
(202 letters)
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4);
transcription factor, basic helix loop helix; HET: DNA;
2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Length = 63
Score = 74.1 bits (182), Expect = 4e-18
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRI-EKTEIIEMAIKHMKYLHSVVCT 110
SH+ E+ RR+R+ L +L+ LIPA++ ++ K +E A +++++L T
Sbjct: 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double
helix, overhanging base, transcription/DNA complex; HET:
DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Length = 65
Score = 59.3 bits (144), Expect = 1e-12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 46 LNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105
++ + H +E+RRRD++NN + LS++IP ++ + K I+ A +++ L
Sbjct: 1 MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A);
basic-helix-loop- helix-leucine zipper, transcription
factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1
PDB: 1ukl_C
Length = 82
Score = 43.9 bits (104), Expect = 1e-06
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 53 SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
+H IEKR R +N+ + +L L+ ++ K+ ++ AI ++++L
Sbjct: 9 AHNAIEKRYRSSINDKIIELKDLVVGT-----EAKLNKSAVLRKAIDYIRFLQHSN 59
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 42.4 bits (100), Expect = 4e-06
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 53 SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
H +E++RRD + + L +P+ +K + +I++ A ++++Y+
Sbjct: 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKAS----RAQILDKATEYIQYMRR 54
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 44.2 bits (104), Expect = 9e-06
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 42 EKKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHM 101
E + + +H IEKRRRD+MN+ + +L+ L+P +++K ++ MA++HM
Sbjct: 5 EHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC--NAMSRKLDKLTVLRMAVQHM 62
Query: 102 K 102
K
Sbjct: 63 K 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS,
circadian rhythm proteins, transcription-activato; 2.27A
{Mus musculus}
Length = 361
Score = 43.0 bits (101), Expect = 2e-05
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 53 SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTRT 112
S EK+RRD+ N + +L ++P + +++K+ +++ +I ++
Sbjct: 15 SRNKSEKKRRDQFNVLIKELGSMLPGN-----ARKMDKSTVLQKSIDFLRKHKETTAQSD 69
Query: 113 PNANPSNELPLENSQMLDN 131
+ + P S
Sbjct: 70 ASEIRQDWKPTFLSNEEFT 88
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA
binding, complex (transcription factor MAX/DNA),
transcription/DNA complex; HET: DNA; 2.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 80
Score = 39.2 bits (92), Expect = 6e-05
Identities = 11/54 (20%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 53 SHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
H +E++RRD + + L +P+ +K + +I++ A ++++Y+
Sbjct: 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEYIQYMRR 64
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 37.7 bits (88), Expect = 2e-04
Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 47 NREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
+H ++E++RR+ + L IP + + K I++ A ++ + +
Sbjct: 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNE---KAPKVVILKKATAYILSVQA 59
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ,
transcription/DNA complex; 2.00A {Homo sapiens} SCOP:
a.38.1.1
Length = 80
Score = 36.0 bits (83), Expect = 9e-04
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHS 106
+H +EK RR + L L L+P R ++ A H+K L
Sbjct: 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS---RHTTLSLLTKAKLHIKKLED 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.13
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 39 LLPEKKMLNREDPMSHR-IIEKRRRDRMNNCLADLSRLIPADY--------LKKGRGRIE 89
+ E K+ + HR I++ + DL Y LK E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPE 488
Query: 90 KTEIIEMAIKHMKYLHSVVCTRTPNANPSNELPLENSQMLDNY-----DQDSKVSGKEET 144
+ + M ++L + + N S + L Q L Y D D K
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 145 SEHNPSKPTEN 155
K EN
Sbjct: 548 ILDFLPKIEEN 558
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP
binding, transferase-transfera inhibitor complex; HET:
046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A*
3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A*
3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 30.7 bits (70), Expect = 0.24
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
DYL+K + RI+ ++++ K M+YL +
Sbjct: 102 DYLQKHKERIDHIKLLQYTSQICKGMEYLGT 132
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA
complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1
PDB: 1mdy_B*
Length = 68
Score = 28.5 bits (64), Expect = 0.28
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 58 EKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
E+RR ++N L R ++ ++ + K EI+ AI++++ L ++
Sbjct: 20 ERRRLSKVNEAFETLKRSTSSNPNQR----LPKVEILRNAIRYIEGLQAL 65
>2ql2_B Neurod1, neurogenic differentiation factor 1;
basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Length = 60
Score = 28.0 bits (63), Expect = 0.36
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 60 RRRDRM---NNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
R R+RM N L +L +++P + ++ K E + +A ++ L +
Sbjct: 9 RERNRMHGLNAALDNLRKVVPCYSKTQ---KLSKIETLRLAKNYIWALSEI 56
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 30.0 bits (68), Expect = 0.39
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
DYL+K + RI+ ++++ K M+YL +
Sbjct: 133 DYLQKHKERIDHIKLLQYTSQICKGMEYLGT 163
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 30.0 bits (68), Expect = 0.45
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
D+L++ R R++ + ++ + K M+YL S
Sbjct: 115 DFLQRHRARLDASRLLLYSSQICKGMEYLGS 145
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 29.6 bits (67), Expect = 0.66
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+YL K + +I + ++ A+ K M YL S
Sbjct: 114 EYLPKNKNKINLKQQLKYAVQICKGMDYLGS 144
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 29.5 bits (67), Expect = 0.72
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L+ R+ +++M M+YL S
Sbjct: 201 TFLRTEGARLRVKTLLQMVGDAAAGMEYLES 231
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 29.2 bits (66), Expect = 0.75
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L + + ++I++A + M YLH+
Sbjct: 120 KHLHVQETKFQMFQLIDIARQTAQGMDYLHA 150
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 29.1 bits (66), Expect = 0.81
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
YL++ + ++ ++ ++ K M YL S
Sbjct: 101 HYLERNKNSLKVLTLVLYSLQICKAMAYLES 131
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 29.1 bits (66), Expect = 0.91
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
DY+++ + I ++ + K M YL
Sbjct: 105 DYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 28.8 bits (65), Expect = 1.1
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L + E ++I++A + M YLH+
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLHA 138
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYL 104
+YL++ R R + +++EM + M+YL
Sbjct: 108 NYLREMRHRFQTQQLLEMCKDVCEAMEYL 136
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 28.7 bits (65), Expect = 1.1
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L+ + ++ +I A + YL S
Sbjct: 104 SFLQVRKYSLDLASLILYAYQLSTALAYLES 134
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
D L+K +G + A+ + M YL S
Sbjct: 109 DRLRKHQGHFLLGTLSRYAVQVAEGMGYLES 139
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 28.4 bits (64), Expect = 1.3
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYL 104
YLKK + I +E+A M +L
Sbjct: 101 TYLKKNKNCINILWKLEVAKQLAAAMHFL 129
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 28.7 bits (65), Expect = 1.3
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYL 104
DYL+ RG ++ M + + M YL
Sbjct: 92 DYLRTQRGLFAAETLLGMCLDVCEGMAYL 120
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 28.4 bits (64), Expect = 1.4
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L+ G+ +++ M M+YL
Sbjct: 139 TFLRTHDGQFTIMQLVGMLRGVGAGMRYLSD 169
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 28.4 bits (64), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L++ G +++ M MKYL +
Sbjct: 135 KFLREKDGEFSVLQLVGMLRGIAAGMKYLAN 165
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural
genomics, unknown function, DNA binding protein, NPPSFA;
1.90A {Homo sapiens} SCOP: a.273.1.1
Length = 64
Score = 26.6 bits (58), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 169 GEGSPAPINLEHFKLGYQECLSESMHYLVEVKG 201
G + +++ LG++ECL+E YL ++G
Sbjct: 8 GYFDAHALAMDYRSLGFRECLAEVARYLSIIEG 40
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 28.3 bits (63), Expect = 2.1
Identities = 6/31 (19%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L+ + ++ +I A + YL S
Sbjct: 479 SFLQVRKFSLDLASLILYAYQLSTALAYLES 509
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 27.7 bits (62), Expect = 2.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
D++++ RG + ++ + K M YL
Sbjct: 103 DHVRQHRGALGPQLLLNWGVQIAKGMYYLEE 133
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 27.7 bits (62), Expect = 2.4
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+K + ++ + A M YLHS
Sbjct: 96 GIIKSMDSQYPWSQRVSFAKDIASGMAYLHS 126
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 27.7 bits (62), Expect = 3.0
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
DY+++ + I ++ + K M YL
Sbjct: 105 DYVREHKDNIGSQYLLNWCVQIAKGMNYLED 135
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 27.3 bits (61), Expect = 3.2
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+L+K + +++ M MKYL
Sbjct: 135 SFLRKHDAQFTVIQLVGMLRGIASGMKYLSD 165
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic
helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB:
2ql2_A*
Length = 76
Score = 25.6 bits (56), Expect = 3.5
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 52 MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCTR 111
H +E++RR +N +L R+ K K I++ A++ + L V R
Sbjct: 7 AHHNALERKRRRDINEAFRELGRMCQMHL--KSDKAQTKLLILQQAVQVILGLEQQV--R 62
Query: 112 TPNANPSNE 120
N NP N
Sbjct: 63 ERNLNPLNH 71
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 26.8 bits (60), Expect = 4.8
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYL 104
+L R I + + E+ MKYL
Sbjct: 98 KFLVGKREEIPVSNVAELLHQVSMGMKYL 126
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 26.8 bits (60), Expect = 5.5
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYLHS 106
+YL+ +E ++++EM + M +L S
Sbjct: 92 NYLRSHGKGLEPSQLLEMCYDVCEGMAFLES 122
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 26.8 bits (59), Expect = 6.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 79 DYLKKGRGRIEKTEIIEMAI---KHMKYL 104
+L R I + + E+ MKYL
Sbjct: 424 KFLVGKREEIPVSNVAELLHQVSMGMKYL 452
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer,
electron transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 25.4 bits (55), Expect = 7.4
Identities = 13/61 (21%), Positives = 22/61 (36%)
Query: 7 HYLDSPLALPSEPPPVLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIEKRRRDRMN 66
H + + P L V + L +ML +DP++ + E+ R M
Sbjct: 18 HTVGNTEPGQPGIGPDLLGVTRQRDANWLVRWLKVPDQMLAEKDPLAMLLFEQYNRLAMP 77
Query: 67 N 67
N
Sbjct: 78 N 78
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 68
Score = 24.3 bits (52), Expect = 9.4
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 RDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSV 107
D MN+C + L L+P + +G ++ + EI++ I ++ L V
Sbjct: 26 LDDMNHCYSRLRELVP--GVPRGT-QLSQVEILQRVIDYILDLQVV 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.128 0.365
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,916,597
Number of extensions: 156451
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 46
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (24.9 bits)