RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3641
         (202 letters)



>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 56.3 bits (136), Expect = 7e-12
 Identities = 16/61 (26%), Positives = 33/61 (54%)

Query: 46  LNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLH 105
           ++ +    H  +E+RRRD++NN +  LS++IP   ++  +    K  I+  A  +++ L 
Sbjct: 1   MDEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60

Query: 106 S 106
            
Sbjct: 61  Q 61


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRG-RIEKTEIIEMAIKHMKYLHSVVCT 110
            SH+  E+ RR+R+   L +L+ LIPA++ ++       K   +E A +++++L     T
Sbjct: 4   ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST 63


>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 47.6 bits (113), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 43  KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMK 102
           +K  N +   +  + E+RR  ++N     L R   ++  +    R+ K EI+  AI++++
Sbjct: 5   RKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQ----RLPKVEILRNAIRYIE 60

Query: 103 YLHSVV 108
            L +++
Sbjct: 61  GLQALL 66


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 46.4 bits (110), Expect = 6e-08
 Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVVCT 110
             H  +E++RRD + +    L   +P+   +K      + +I++ A ++++Y+     T
Sbjct: 4   AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEYIQYMRRKNHT 58


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H ++E++RR+ +      L   IP     +   ++    I++ A  ++  + +  
Sbjct: 8   RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKV---VILKKATAYILSVQAEE 61


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 43.0 bits (101), Expect = 9e-07
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H  IEKR R  +N+ + +L  L+          ++ K+ ++  AI ++++L    
Sbjct: 8   TAHNAIEKRYRSSINDKIIELKDLVVGTE-----AKLNKSAVLRKAIDYIRFLQHSN 59


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 52  MSHRIIEKRRRDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
            +H  +EK RR  +   L  L  L+P         R     ++  A  H+K L    
Sbjct: 3   STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS---RHTTLSLLTKAKLHIKKLEDSD 56


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 62  RDRMNNCLADLSRLIPADYLKKGRGRIEKTEIIEMAIKHMKYLHSVV 108
           R  +N+ + +L  L+          ++ K+ ++  AI ++KYL  V 
Sbjct: 1   RSSINDKIIELKDLVMG-----TDAKMHKSGVLRKAIDYIKYLQQVN 42


>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 127

 Score = 25.9 bits (57), Expect = 2.3
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 21 PVLENVANHQSQTQNQAQLLPE-KKMLNREDPMSHRIIEKRRRDRMNNCLADLSRLIP 77
           V E V   +        L P   KM    D     +  +  R  + N +  +  L+P
Sbjct: 21 TVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLP 78


>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with
           YRPW motif protein 1; HESR-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 55

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 169 GEGSPAPINLEHFKLGYQECLSESMHYLVEVKG 201
           G      + +++  LG++ECL+E   YL  ++G
Sbjct: 1   GYFDAHALAMDYRSLGFRECLAEVARYLSIIEG 33


>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 181

 Score = 25.6 bits (56), Expect = 3.3
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 5/59 (8%)

Query: 22  VLENVANHQSQTQNQAQLLPEKKMLNREDPMSHRIIE---KRRRDRMNNCLADLSRLIP 77
            L N  N Q        L PE  +       + R  E      RD+M      L + +P
Sbjct: 82  KLRNAGNEQDLGIQYKALKPE--VDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVP 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 719,552
Number of extensions: 31225
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 14
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.6 bits)