BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3643
         (153 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4W502|LIGB_ENT38 DNA ligase B OS=Enterobacter sp. (strain 638) GN=ligB PE=3 SV=1
          Length = 556

 Score = 30.0 bits (66), Expect = 5.7,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 77  SHLPGIRATMCRKIRQKVHGEWRYYRGCAWLGEPGIGG 114
           + LPGI     RK+ + VH + +  R   WLGE GI G
Sbjct: 519 NQLPGIGTEKARKLVEFVH-DSQITRLATWLGEQGIDG 555


>sp|B4J8Z9|QVR_DROGR Protein quiver OS=Drosophila grimshawi GN=qvr PE=3 SV=2
          Length = 161

 Score = 29.6 bits (65), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 43 IKCWNCRSDSDPKCADPFDNSSIPINDCKVEPELSHLPGIRATMCRKIRQK 93
          I C+ C S +D +C DPF+ +++P    + +P L    G    M R  R +
Sbjct: 39 IYCYECDSWTDARCKDPFNYTALP----RDQPPLMTCNGCCVKMVRHQRSR 85


>sp|B4MQJ1|QVR_DROWI Protein quiver OS=Drosophila willistoni GN=qvr PE=3 SV=2
          Length = 161

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 43 IKCWNCRSDSDPKCADPFDNSSIPINDCKVEPELSHLPGIRATMCRKIRQK 93
          I C+ C S +D +C DPF+ +++P    + +P L    G    M R  R +
Sbjct: 40 IYCYECDSWTDARCKDPFNYTALP----RDQPPLMTCNGCCVKMVRHQRSR 86


>sp|B4LQ44|QVR_DROVI Protein quiver OS=Drosophila virilis GN=qvr PE=3 SV=2
          Length = 159

 Score = 29.6 bits (65), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 43 IKCWNCRSDSDPKCADPFDNSSIPINDCKVEPELSHLPGIRATMCRKIRQK 93
          I C+ C S +D +C DPF+ +++P    + +P L    G    M R  R +
Sbjct: 39 IYCYECDSWTDARCKDPFNYTALP----RDQPPLMTCNGCCVKMVRHQRSR 85


>sp|B4GAN3|QVR_DROPE Protein quiver OS=Drosophila persimilis GN=qvr PE=3 SV=2
          Length = 160

 Score = 29.3 bits (64), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 43 IKCWNCRSDSDPKCADPFDNSSIPINDCKVEPELSHLPGIRATMCRKIRQK 93
          I C+ C S +D +C DPF+ +++P    + +P L    G    M R  R +
Sbjct: 40 IYCYECDSWTDARCKDPFNYTALP----RDQPPLMTCNGCCVKMVRHQRSR 86


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.474 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,952,470
Number of Sequences: 539616
Number of extensions: 2367450
Number of successful extensions: 4679
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4666
Number of HSP's gapped (non-prelim): 17
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)