RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3643
         (153 letters)



>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
           {Thermus thermophilus [TaxId: 274]}
          Length = 65

 Score = 30.8 bits (70), Expect = 0.012
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 65  IPINDCKVEPELSHLPGIRATMCRKIRQKVHGEWRYYRGCAWLGE-PGIG 113
           + +N+  +E EL  LPGI   + R+I      E R Y     L +  GIG
Sbjct: 9   VSLNEASLE-ELMALPGIGPVLARRIV-----EGRPYARVEDLLKVKGIG 52


>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 91

 Score = 29.1 bits (65), Expect = 0.075
 Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 8/72 (11%)

Query: 45  CWNCRSDSDPKCADPFDNSS-IPINDCKVEPELSHLPGIRATMCRKIR--QKVHGEWRYY 101
           CW       P+            +N+     +L  L  I     + I   +++HG +   
Sbjct: 6   CWE--LQISPELLAHGRQKILDLLNEGSAR-DLRSLQRIGPKKAQLIVGWRELHGPFSQV 62

Query: 102 RGCAWLGEPGIG 113
                +   GI 
Sbjct: 63  EDLERV--EGIT 72


>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 68

 Score = 27.8 bits (62), Expect = 0.13
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 75 ELSHLPGIRATMCRKIRQKVHGEWR 99
          EL  + GI   + ++IR+ +   + 
Sbjct: 43 ELMKVEGIGEKIAKEIRRVITAPYI 67


>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF
          {Aeropyrum pernix [TaxId: 56636]}
          Length = 70

 Score = 27.5 bits (61), Expect = 0.19
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 73 EPELSHLPGIRATMCRKIRQKVHGEWR 99
          + E+S + GI      +I++ +   ++
Sbjct: 44 KAEISKVEGIGEKRAEEIKKILMTPYK 70


>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8
           kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 27.0 bits (60), Expect = 0.40
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 75  ELSHLPGIRATMCRKIRQKV-HGEWRYY 101
           E   LPG+   +  KI + +  G+ R  
Sbjct: 49  EAKKLPGVGTKIAEKIDEFLATGKLRKL 76


>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 76

 Score = 26.7 bits (59), Expect = 0.45
 Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 73  EPELSHLPGIRATMCRKIRQKV-HGEWRYY 101
             E   +PGI   M  KI + +  G  R  
Sbjct: 45  YQEACSIPGIGKRMAEKIIEILESGHLRKL 74


>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
           {Escherichia coli [TaxId: 562]}
          Length = 160

 Score = 25.2 bits (54), Expect = 2.7
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 86  MCRKIRQKVHGEWRYYRGCAWLGEPGIGGDERYCLMRTG 124
           + ++  +   G W    G     E      ER  +   G
Sbjct: 34  LGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELG 72


>d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium
           meliloti [TaxId: 382]}
          Length = 130

 Score = 24.6 bits (52), Expect = 4.2
 Identities = 9/94 (9%), Positives = 18/94 (19%)

Query: 60  FDNSSIPINDCKVEPELSHLPGIRATMCRKIRQKVHGEWRYYRGCAWLGEPGIGGDERYC 119
            D           +  +               ++V G+               G  +RY 
Sbjct: 22  LDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYM 81

Query: 120 LMRTGTYNVFMEYCTCMSKDGCNTASLPNMSPIF 153
                         +   KDG        +  + 
Sbjct: 82  ATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMR 115


>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 188

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 5/19 (26%), Positives = 8/19 (42%)

Query: 109 EPGIGGDERYCLMRTGTYN 127
            P     +   L+ TG +N
Sbjct: 130 TPAGERPQGIALLSTGNFN 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.474 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 629,989
Number of extensions: 29286
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 19
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.2 bits)