Query psy3650
Match_columns 435
No_of_seqs 230 out of 3597
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 22:09:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2978|consensus 100.0 5.2E-41 1.1E-45 263.4 22.5 237 199-435 2-238 (238)
2 PLN02726 dolichyl-phosphate be 100.0 4.8E-37 1E-41 273.6 26.5 238 197-435 6-243 (243)
3 PTZ00260 dolichyl-phosphate be 100.0 4E-32 8.8E-37 250.3 27.2 235 197-433 67-314 (333)
4 cd06442 DPM1_like DPM1_like re 100.0 1.9E-31 4.2E-36 235.2 24.1 223 204-430 1-223 (224)
5 PRK10714 undecaprenyl phosphat 100.0 2.1E-30 4.6E-35 238.3 26.8 224 199-434 5-228 (325)
6 cd04188 DPG_synthase DPG_synth 100.0 2.1E-30 4.4E-35 226.2 21.8 206 204-410 1-208 (211)
7 KOG2978|consensus 100.0 1.1E-29 2.3E-34 199.9 17.0 185 3-187 31-215 (238)
8 cd02520 Glucosylceramide_synth 100.0 1.1E-29 2.4E-34 218.6 18.5 190 200-427 1-195 (196)
9 cd06427 CESA_like_2 CESA_like_ 100.0 4.4E-28 9.5E-33 215.8 18.6 226 200-433 1-235 (241)
10 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 5.3E-27 1.2E-31 215.6 20.7 207 203-412 1-227 (299)
11 PRK11204 N-glycosyltransferase 100.0 7.5E-27 1.6E-31 225.0 22.2 225 197-432 51-283 (420)
12 cd06437 CESA_CaSu_A2 Cellulose 100.0 5.9E-27 1.3E-31 207.5 18.9 218 200-425 1-229 (232)
13 TIGR03472 HpnI hopanoid biosyn 99.9 1.2E-26 2.6E-31 218.9 20.0 222 198-427 39-271 (373)
14 PRK14583 hmsR N-glycosyltransf 99.9 2.5E-26 5.4E-31 221.6 22.4 223 198-430 73-302 (444)
15 cd06421 CESA_CelA_like CESA_Ce 99.9 1.2E-26 2.6E-31 206.1 18.6 222 200-429 1-231 (234)
16 PLN02726 dolichyl-phosphate be 99.9 2.1E-26 4.7E-31 205.1 18.4 181 7-187 40-220 (243)
17 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 1.1E-25 2.3E-30 216.5 21.2 230 197-432 46-290 (439)
18 PF13641 Glyco_tranf_2_3: Glyc 99.9 8.8E-27 1.9E-31 206.0 10.1 221 200-425 1-226 (228)
19 cd06439 CESA_like_1 CESA_like_ 99.9 6.6E-25 1.4E-29 197.0 21.9 223 193-428 22-248 (251)
20 cd06435 CESA_NdvC_like NdvC_li 99.9 2.1E-25 4.6E-30 198.2 18.3 220 203-430 1-230 (236)
21 PRK13915 putative glucosyl-3-p 99.9 4.9E-25 1.1E-29 200.4 20.5 228 198-433 29-264 (306)
22 TIGR03469 HonB hopene-associat 99.9 9.6E-25 2.1E-29 206.6 22.8 199 197-403 37-255 (384)
23 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 2.8E-25 6E-30 192.6 15.6 195 200-408 1-199 (202)
24 cd04188 DPG_synthase DPG_synth 99.9 6.2E-25 1.3E-29 191.6 17.8 180 5-185 28-208 (211)
25 cd04179 DPM_DPG-synthase_like 99.9 5.1E-25 1.1E-29 188.1 16.8 185 204-392 1-185 (185)
26 cd02525 Succinoglycan_BP_ExoA 99.9 7.6E-25 1.6E-29 196.4 18.6 219 201-430 1-229 (249)
27 PRK10063 putative glycosyl tra 99.9 2.2E-24 4.8E-29 191.2 21.2 204 200-418 1-205 (248)
28 cd06913 beta3GnTL1_like Beta 1 99.9 2.4E-24 5.1E-29 189.1 20.3 198 204-407 1-206 (219)
29 PTZ00260 dolichyl-phosphate be 99.9 1.5E-24 3.2E-29 200.2 19.2 179 6-184 106-291 (333)
30 cd04187 DPM1_like_bac Bacteria 99.9 4.6E-24 9.9E-29 181.5 19.8 179 204-390 1-179 (181)
31 cd04192 GT_2_like_e Subfamily 99.9 4.6E-24 9.9E-29 188.8 20.3 200 204-409 1-210 (229)
32 PRK10073 putative glycosyl tra 99.9 8.3E-24 1.8E-28 195.1 21.3 206 199-412 5-219 (328)
33 PRK11498 bcsA cellulose syntha 99.9 5.8E-24 1.3E-28 213.1 21.3 226 197-433 257-493 (852)
34 cd06433 GT_2_WfgS_like WfgS an 99.9 2.6E-24 5.7E-29 186.3 16.3 198 203-415 1-200 (202)
35 cd06442 DPM1_like DPM1_like re 99.9 9.5E-24 2.1E-28 186.1 18.4 180 6-187 26-205 (224)
36 cd06434 GT2_HAS Hyaluronan syn 99.9 3.3E-24 7.2E-29 190.5 14.8 215 201-427 1-231 (235)
37 cd04195 GT2_AmsE_like GT2_AmsE 99.9 4.8E-24 1E-28 184.7 15.2 194 203-407 1-198 (201)
38 KOG2977|consensus 99.9 2.1E-23 4.5E-28 175.9 17.8 229 199-429 66-307 (323)
39 TIGR03030 CelA cellulose synth 99.9 2.2E-23 4.8E-28 210.7 21.3 230 197-433 128-382 (713)
40 cd04185 GT_2_like_b Subfamily 99.9 1.4E-23 3.1E-28 181.8 16.8 172 204-413 1-176 (202)
41 cd04196 GT_2_like_d Subfamily 99.9 6.3E-24 1.4E-28 185.8 13.6 205 203-415 1-209 (214)
42 COG1216 Predicted glycosyltran 99.9 1.4E-23 3.1E-28 192.7 15.7 211 199-416 2-226 (305)
43 PRK10018 putative glycosyl tra 99.9 8.7E-23 1.9E-27 183.0 19.5 202 198-410 3-207 (279)
44 cd02522 GT_2_like_a GT_2_like_ 99.9 2.1E-22 4.7E-27 177.1 20.7 193 202-417 1-193 (221)
45 PRK14716 bacteriophage N4 adso 99.9 5E-22 1.1E-26 190.2 23.0 228 198-432 64-328 (504)
46 COG1215 Glycosyltransferases, 99.9 1.1E-22 2.4E-27 197.9 18.6 228 199-432 53-288 (439)
47 cd06420 GT2_Chondriotin_Pol_N 99.9 2.8E-22 6.1E-27 170.7 17.9 177 204-409 1-180 (182)
48 cd02526 GT2_RfbF_like RfbF is 99.9 2.7E-23 5.9E-28 184.8 11.9 203 204-417 1-211 (237)
49 cd04186 GT_2_like_c Subfamily 99.9 4.1E-22 8.8E-27 166.9 15.6 164 204-410 1-165 (166)
50 cd04191 Glucan_BSP_ModH Glucan 99.9 2.9E-21 6.3E-26 170.9 21.4 225 202-430 1-253 (254)
51 PF00535 Glycos_transf_2: Glyc 99.9 1.7E-22 3.8E-27 169.4 11.5 167 203-374 1-169 (169)
52 cd04190 Chitin_synth_C C-termi 99.9 5.5E-22 1.2E-26 176.4 10.2 198 204-429 1-242 (244)
53 PRK10714 undecaprenyl phosphat 99.9 5.6E-21 1.2E-25 176.0 17.0 173 3-187 34-206 (325)
54 TIGR01556 rhamnosyltran L-rham 99.9 3.5E-21 7.6E-26 175.5 13.3 196 207-415 1-206 (281)
55 cd06438 EpsO_like EpsO protein 99.9 1.2E-20 2.7E-25 160.5 15.6 170 204-388 1-183 (183)
56 PRK11234 nfrB bacteriophage N4 99.9 9.4E-20 2E-24 181.7 22.8 224 198-432 61-333 (727)
57 PF10111 Glyco_tranf_2_2: Glyc 99.8 5.2E-20 1.1E-24 166.8 18.3 206 203-412 1-224 (281)
58 cd06913 beta3GnTL1_like Beta 1 99.8 7E-20 1.5E-24 160.7 17.7 172 7-180 27-204 (219)
59 cd04179 DPM_DPG-synthase_like 99.8 9.6E-21 2.1E-25 161.6 11.6 159 6-167 27-185 (185)
60 cd02520 Glucosylceramide_synth 99.8 3.8E-20 8.3E-25 159.3 14.3 147 3-184 26-176 (196)
61 cd02510 pp-GalNAc-T pp-GalNAc- 99.8 5.3E-20 1.2E-24 169.1 16.1 179 8-187 31-227 (299)
62 cd06436 GlcNAc-1-P_transferase 99.8 1.4E-19 3E-24 154.9 15.0 162 204-375 1-180 (191)
63 cd04195 GT2_AmsE_like GT2_AmsE 99.8 2.1E-19 4.5E-24 155.5 15.4 169 3-179 25-195 (201)
64 cd04187 DPM1_like_bac Bacteria 99.8 2.7E-19 5.8E-24 152.1 15.5 153 5-165 27-179 (181)
65 cd06427 CESA_like_2 CESA_like_ 99.8 3.1E-19 6.8E-24 158.9 15.8 167 8-178 33-205 (241)
66 PRK10073 putative glycosyl tra 99.8 1.3E-18 2.8E-23 160.7 16.9 175 2-180 30-211 (328)
67 cd06423 CESA_like CESA_like is 99.8 1.5E-19 3.3E-24 152.7 10.0 170 204-377 1-173 (180)
68 cd04192 GT_2_like_e Subfamily 99.8 2.1E-18 4.5E-23 152.5 16.4 169 3-177 22-201 (229)
69 cd06433 GT_2_WfgS_like WfgS an 99.8 1.4E-18 3E-23 150.3 14.5 168 3-182 23-191 (202)
70 cd04184 GT2_RfbC_Mx_like Myxoc 99.8 1.7E-18 3.7E-23 149.9 14.0 168 3-180 27-196 (202)
71 TIGR03472 HpnI hopanoid biosyn 99.8 1.2E-18 2.7E-23 164.4 13.9 171 3-178 65-246 (373)
72 cd06437 CESA_CaSu_A2 Cellulose 99.8 3.8E-18 8.1E-23 151.1 16.1 169 8-181 33-209 (232)
73 PRK05454 glucosyltransferase M 99.8 2E-17 4.4E-22 164.3 22.9 230 196-432 120-380 (691)
74 TIGR03469 HonB hopene-associat 99.8 2.9E-18 6.3E-23 162.5 16.1 169 3-176 64-253 (384)
75 cd06421 CESA_CelA_like CESA_Ce 99.8 3.8E-18 8.3E-23 151.4 15.5 168 8-180 34-206 (234)
76 PRK15489 nfrB bacteriophage N4 99.8 2.4E-17 5.2E-22 162.4 22.4 200 198-404 69-288 (703)
77 cd04196 GT_2_like_d Subfamily 99.8 2.4E-18 5.2E-23 150.4 12.7 172 3-179 23-197 (214)
78 cd02525 Succinoglycan_BP_ExoA 99.8 2.1E-18 4.6E-23 154.5 12.3 173 6-182 30-205 (249)
79 PRK11204 N-glycosyltransferase 99.8 8.1E-18 1.8E-22 162.3 16.4 169 3-179 78-254 (420)
80 PRK13915 putative glucosyl-3-p 99.8 1E-17 2.2E-22 152.6 15.0 172 5-180 60-240 (306)
81 cd04185 GT_2_like_b Subfamily 99.8 7.7E-18 1.7E-22 145.8 13.6 148 3-185 22-173 (202)
82 cd06439 CESA_like_1 CESA_like_ 99.8 2.4E-17 5.3E-22 147.8 16.9 168 8-185 61-229 (251)
83 PRK10063 putative glycosyl tra 99.8 2.1E-17 4.5E-22 146.6 15.9 164 5-183 31-194 (248)
84 PRK14583 hmsR N-glycosyltransf 99.8 2.2E-17 4.8E-22 159.6 17.1 169 3-179 99-275 (444)
85 cd06435 CESA_NdvC_like NdvC_li 99.8 1.2E-17 2.6E-22 148.3 14.0 171 4-179 24-203 (236)
86 cd06420 GT2_Chondriotin_Pol_N 99.8 2.8E-17 6E-22 139.8 14.8 149 3-177 22-172 (182)
87 PRK10018 putative glycosyl tra 99.7 3.3E-17 7.2E-22 147.0 15.8 171 2-179 29-200 (279)
88 PF13641 Glyco_tranf_2_3: Glyc 99.7 2.3E-18 5E-23 152.1 7.4 178 6-185 29-210 (228)
89 PF00535 Glycos_transf_2: Glyc 99.7 3.9E-18 8.4E-23 142.9 8.0 144 4-149 24-169 (169)
90 KOG2977|consensus 99.7 2.1E-17 4.5E-22 139.9 12.1 184 4-187 101-291 (323)
91 TIGR03111 glyc2_xrt_Gpos1 puta 99.7 4.4E-17 9.4E-22 157.0 15.8 174 3-179 73-261 (439)
92 cd02526 GT2_RfbF_like RfbF is 99.7 2.4E-17 5.3E-22 146.5 11.9 174 7-186 24-205 (237)
93 cd04186 GT_2_like_c Subfamily 99.7 9.2E-17 2E-21 134.3 13.3 140 5-184 24-164 (166)
94 cd06434 GT2_HAS Hyaluronan syn 99.7 6.9E-17 1.5E-21 143.4 12.0 166 7-179 28-207 (235)
95 TIGR01556 rhamnosyltran L-rham 99.7 1.3E-16 2.9E-21 145.3 12.4 176 7-186 21-202 (281)
96 cd02522 GT_2_like_a GT_2_like_ 99.7 9.7E-16 2.1E-20 134.6 14.1 155 3-176 24-178 (221)
97 cd06438 EpsO_like EpsO protein 99.7 8.3E-16 1.8E-20 130.7 12.6 144 7-162 28-182 (183)
98 cd02511 Beta4Glucosyltransfera 99.7 6.4E-16 1.4E-20 136.2 12.2 106 201-320 1-106 (229)
99 PRK11498 bcsA cellulose syntha 99.7 1.1E-15 2.5E-20 153.9 14.1 168 3-178 285-462 (852)
100 cd00761 Glyco_tranf_GTA_type G 99.7 2.9E-15 6.3E-20 123.1 14.3 153 204-400 1-155 (156)
101 TIGR03030 CelA cellulose synth 99.6 2.4E-15 5.2E-20 152.6 15.6 173 3-179 156-352 (713)
102 PRK14716 bacteriophage N4 adso 99.6 5.1E-15 1.1E-19 142.2 16.7 176 2-181 90-285 (504)
103 COG1216 Predicted glycosyltran 99.6 1.6E-15 3.4E-20 139.5 12.6 184 3-190 27-225 (305)
104 PF10111 Glyco_tranf_2_2: Glyc 99.6 5E-15 1.1E-19 134.3 13.6 179 4-184 31-221 (281)
105 COG1215 Glycosyltransferases, 99.6 4.3E-15 9.3E-20 144.6 13.8 175 2-179 78-259 (439)
106 cd06423 CESA_like CESA_like is 99.6 4.1E-15 8.8E-20 125.4 10.2 145 3-151 22-172 (180)
107 cd06436 GlcNAc-1-P_transferase 99.6 1.8E-14 3.8E-19 123.3 13.5 139 6-150 24-180 (191)
108 COG0463 WcaA Glycosyltransfera 99.6 1.1E-13 2.4E-18 122.2 16.3 106 199-310 2-107 (291)
109 cd04191 Glucan_BSP_ModH Glucan 99.5 3E-13 6.4E-18 119.9 15.7 172 4-179 29-225 (254)
110 PF13506 Glyco_transf_21: Glyc 99.5 5.5E-13 1.2E-17 111.3 14.7 147 272-422 17-167 (175)
111 PRK11234 nfrB bacteriophage N4 99.4 2E-12 4.3E-17 129.7 16.1 174 3-181 88-282 (727)
112 cd04190 Chitin_synth_C C-termi 99.4 1.5E-13 3.2E-18 122.3 7.1 142 7-176 37-211 (244)
113 KOG3737|consensus 99.4 8.4E-13 1.8E-17 116.8 9.3 212 198-412 153-389 (603)
114 KOG3738|consensus 99.4 8.7E-13 1.9E-17 117.0 7.4 205 198-409 122-346 (559)
115 KOG3736|consensus 99.4 6E-13 1.3E-17 127.1 5.9 214 196-413 138-372 (578)
116 cd02511 Beta4Glucosyltransfera 99.3 4.1E-12 8.9E-17 112.0 9.9 80 8-95 27-106 (229)
117 cd00761 Glyco_tranf_GTA_type G 99.3 3E-11 6.5E-16 99.0 12.5 127 6-173 25-153 (156)
118 PRK15489 nfrB bacteriophage N4 99.3 1.5E-10 3.4E-15 114.7 17.5 171 2-177 95-286 (703)
119 PRK05454 glucosyltransferase M 99.2 3.7E-10 8E-15 112.9 15.3 169 7-179 159-350 (691)
120 PF13632 Glyco_trans_2_3: Glyc 99.2 3.1E-10 6.7E-15 97.3 11.8 138 288-427 1-142 (193)
121 KOG2547|consensus 99.1 1.9E-10 4.2E-15 101.7 9.4 199 198-403 83-290 (431)
122 PF13712 Glyco_tranf_2_5: Glyc 99.1 2.9E-10 6.2E-15 98.2 9.1 178 202-413 1-201 (217)
123 COG0463 WcaA Glycosyltransfera 99.1 3.4E-10 7.3E-15 99.7 8.7 80 3-85 28-107 (291)
124 KOG3738|consensus 99.1 9.5E-11 2.1E-15 104.2 4.4 174 8-188 157-350 (559)
125 PF13506 Glyco_transf_21: Glyc 99.1 1.1E-09 2.4E-14 91.4 10.3 129 47-179 17-148 (175)
126 KOG3736|consensus 99.0 4.4E-10 9.5E-15 107.8 5.5 178 8-187 175-371 (578)
127 KOG3737|consensus 98.9 2.4E-09 5.2E-14 95.2 7.1 179 8-187 188-389 (603)
128 cd02514 GT13_GLCNAC-TI GT13_GL 98.9 1.1E-08 2.4E-13 93.0 11.3 186 202-411 2-210 (334)
129 cd00899 b4GalT Beta-4-Galactos 98.7 1.3E-06 2.7E-11 74.2 15.2 153 200-405 2-160 (219)
130 PF03142 Chitin_synth_2: Chiti 98.6 7.3E-07 1.6E-11 85.8 14.7 228 200-429 25-375 (527)
131 PF13632 Glyco_trans_2_3: Glyc 98.5 8.8E-07 1.9E-11 75.8 10.0 113 63-180 1-119 (193)
132 PLN02893 Cellulose synthase-li 98.4 3.8E-06 8.3E-11 83.3 13.6 170 261-433 265-499 (734)
133 COG4092 Predicted glycosyltran 98.4 2.3E-05 5.1E-10 66.7 15.6 191 199-395 1-216 (346)
134 PF13712 Glyco_tranf_2_5: Glyc 98.2 3E-06 6.5E-11 73.3 6.5 141 36-179 30-192 (217)
135 KOG2571|consensus 98.0 0.00013 2.8E-09 73.4 13.3 138 287-427 442-596 (862)
136 PF05679 CHGN: Chondroitin N-a 98.0 0.00015 3.3E-09 70.9 13.6 200 197-404 244-461 (499)
137 KOG2547|consensus 97.9 2.7E-05 5.8E-10 69.8 7.3 166 6-173 113-285 (431)
138 PF13704 Glyco_tranf_2_4: Glyc 97.9 3.9E-05 8.4E-10 57.4 6.3 65 8-76 20-87 (97)
139 cd02514 GT13_GLCNAC-TI GT13_GL 97.8 8.8E-05 1.9E-09 67.9 9.0 86 5-95 29-136 (334)
140 PF13704 Glyco_tranf_2_4: Glyc 97.8 0.0001 2.2E-09 55.1 7.5 80 209-297 1-83 (97)
141 COG2943 MdoH Membrane glycosyl 97.8 0.0017 3.7E-08 61.3 16.4 204 199-404 143-370 (736)
142 PF03071 GNT-I: GNT-I family; 97.8 0.0002 4.3E-09 67.2 10.0 197 198-410 91-304 (434)
143 PRK14503 mannosyl-3-phosphogly 97.7 0.0042 9.2E-08 56.0 17.4 173 200-383 51-269 (393)
144 TIGR02460 osmo_MPGsynth mannos 97.7 0.0051 1.1E-07 55.1 17.5 174 200-384 50-269 (381)
145 PF03452 Anp1: Anp1; InterPro 97.6 0.0013 2.9E-08 57.7 11.6 123 196-325 21-179 (269)
146 KOG3916|consensus 97.5 0.00069 1.5E-08 60.2 9.6 153 199-404 150-308 (372)
147 PF09488 Osmo_MPGsynth: Mannos 97.3 0.013 2.8E-07 52.9 15.2 147 200-354 50-239 (381)
148 PF11735 CAP59_mtransfer: Cryp 97.3 0.0074 1.6E-07 52.6 13.3 169 204-373 4-212 (241)
149 PF06306 CgtA: Beta-1,4-N-acet 97.0 0.0026 5.7E-08 56.3 7.7 117 200-323 87-212 (347)
150 KOG3588|consensus 96.9 0.012 2.7E-07 53.0 11.0 200 195-405 224-432 (494)
151 COG4092 Predicted glycosyltran 96.9 0.015 3.3E-07 50.1 10.8 164 3-170 34-216 (346)
152 PLN02893 Cellulose synthase-li 96.8 0.011 2.4E-07 59.4 11.0 108 36-145 265-386 (734)
153 PF02709 Glyco_transf_7C: N-te 96.8 0.0016 3.5E-08 45.9 3.8 51 354-404 15-67 (78)
154 PLN02189 cellulose synthase 96.8 0.0041 8.8E-08 64.2 7.5 63 261-323 499-575 (1040)
155 PRK14502 bifunctional mannosyl 96.6 0.16 3.5E-06 50.9 17.1 147 200-354 55-243 (694)
156 PF01762 Galactosyl_T: Galacto 96.5 0.0097 2.1E-07 50.8 7.5 165 231-403 19-195 (195)
157 cd06915 NTP_transferase_WcbM_l 96.5 0.02 4.4E-07 49.9 9.6 174 212-404 29-206 (223)
158 cd04181 NTP_transferase NTP_tr 96.3 0.05 1.1E-06 47.2 10.7 178 212-404 29-209 (217)
159 cd02508 ADP_Glucose_PP ADP-glu 96.1 0.2 4.2E-06 42.9 13.4 154 205-403 23-192 (200)
160 cd06428 M1P_guanylylT_A_like_N 96.1 0.043 9.2E-07 49.2 9.2 110 205-321 25-137 (257)
161 PF11316 Rhamno_transf: Putati 96.0 0.027 5.9E-07 49.1 7.5 88 218-311 47-140 (234)
162 PLN02917 CMP-KDO synthetase 96.0 0.13 2.9E-06 46.8 12.2 139 261-405 110-268 (293)
163 cd00899 b4GalT Beta-4-Galactos 96.0 0.039 8.6E-07 47.2 8.1 117 36-180 36-160 (219)
164 PRK05450 3-deoxy-manno-octulos 96.0 0.22 4.7E-06 44.2 13.4 182 210-404 25-223 (245)
165 PLN02458 transferase, transfer 95.9 0.068 1.5E-06 47.9 9.5 104 198-307 110-224 (346)
166 PLN02638 cellulose synthase A 95.8 0.014 3.1E-07 60.6 5.6 63 261-323 517-593 (1079)
167 cd00218 GlcAT-I Beta1,3-glucur 95.7 0.11 2.4E-06 44.4 9.6 101 200-307 1-117 (223)
168 PF12804 NTP_transf_3: MobA-li 95.7 0.079 1.7E-06 43.5 8.7 100 210-322 22-123 (160)
169 KOG1413|consensus 95.6 0.15 3.3E-06 46.0 10.5 188 197-399 64-269 (411)
170 PLN02195 cellulose synthase A 95.6 0.02 4.4E-07 58.9 5.5 63 262-324 421-497 (977)
171 PF11397 GlcNAc: Glycosyltrans 95.5 0.36 7.7E-06 44.8 12.9 209 202-412 2-264 (343)
172 PF03452 Anp1: Anp1; InterPro 95.5 0.12 2.6E-06 45.7 9.3 95 2-100 48-179 (269)
173 PLN02248 cellulose synthase-li 95.3 0.019 4.2E-07 59.7 4.5 63 261-323 586-661 (1135)
174 cd02517 CMP-KDO-Synthetase CMP 95.3 0.5 1.1E-05 41.7 13.1 180 210-403 24-219 (239)
175 KOG2571|consensus 95.3 0.064 1.4E-06 54.8 7.8 134 45-180 423-573 (862)
176 PF03214 RGP: Reversibly glyco 95.3 0.027 5.8E-07 50.5 4.6 110 198-313 6-119 (348)
177 cd02516 CDP-ME_synthetase CDP- 95.2 0.73 1.6E-05 39.9 13.7 171 210-403 26-201 (218)
178 cd04182 GT_2_like_f GT_2_like_ 94.8 0.16 3.5E-06 42.7 8.2 100 210-320 24-126 (186)
179 PF11735 CAP59_mtransfer: Cryp 94.8 0.17 3.7E-06 44.3 8.2 90 8-98 35-149 (241)
180 PF05679 CHGN: Chondroitin N-a 94.7 0.27 5.8E-06 48.5 10.4 170 4-178 277-460 (499)
181 PF13733 Glyco_transf_7N: N-te 94.7 0.18 4E-06 39.2 7.3 75 199-298 46-124 (136)
182 PRK00317 mobA molybdopterin-gu 94.4 0.81 1.7E-05 38.8 11.5 50 270-319 73-123 (193)
183 cd06915 NTP_transferase_WcbM_l 94.3 0.34 7.4E-06 42.1 9.2 134 36-178 71-205 (223)
184 TIGR02460 osmo_MPGsynth mannos 94.1 2 4.3E-05 39.1 13.3 162 8-173 77-284 (381)
185 PF09258 Glyco_transf_64: Glyc 94.1 0.13 2.9E-06 45.4 6.1 167 202-393 1-180 (247)
186 cd06425 M1P_guanylylT_B_like_N 94.0 0.62 1.3E-05 40.9 10.3 182 206-404 26-212 (233)
187 cd04189 G1P_TT_long G1P_TT_lon 94.0 1.3 2.7E-05 39.0 12.2 183 206-404 26-213 (236)
188 cd02513 CMP-NeuAc_Synthase CMP 93.9 0.94 2E-05 39.4 11.2 97 272-373 79-189 (223)
189 PRK14503 mannosyl-3-phosphogly 93.9 2.3 5E-05 39.0 13.3 122 47-172 144-284 (393)
190 PF11316 Rhamno_transf: Putati 93.9 0.23 4.9E-06 43.4 7.0 82 2-86 53-140 (234)
191 COG1209 RfbA dTDP-glucose pyro 93.8 1.2 2.5E-05 39.3 11.0 185 205-405 25-216 (286)
192 cd04181 NTP_transferase NTP_tr 93.8 0.41 8.9E-06 41.4 8.7 61 36-97 71-131 (217)
193 cd06422 NTP_transferase_like_1 93.8 0.77 1.7E-05 39.9 10.5 171 206-396 25-198 (221)
194 TIGR00466 kdsB 3-deoxy-D-manno 93.8 1.9 4E-05 38.1 12.9 119 285-405 87-224 (238)
195 PLN02190 cellulose synthase-li 93.8 0.092 2E-06 52.9 4.9 52 261-312 253-314 (756)
196 cd06426 NTP_transferase_like_2 93.7 0.63 1.4E-05 40.4 9.7 178 206-405 24-204 (220)
197 cd02503 MobA MobA catalyzes th 93.6 0.44 9.5E-06 39.9 8.3 94 210-320 24-118 (181)
198 KOG1476|consensus 93.5 0.59 1.3E-05 41.8 8.8 104 199-310 86-205 (330)
199 KOG2287|consensus 93.5 1.6 3.5E-05 40.9 12.5 194 200-404 95-303 (349)
200 PF03142 Chitin_synth_2: Chiti 93.5 0.2 4.4E-06 49.0 6.6 86 61-147 202-291 (527)
201 PRK14352 glmU bifunctional N-a 93.4 0.43 9.2E-06 47.2 8.9 183 206-404 27-223 (482)
202 cd02540 GT2_GlmU_N_bac N-termi 93.3 0.82 1.8E-05 39.9 9.8 176 212-405 26-215 (229)
203 PF12804 NTP_transf_3: MobA-li 93.2 0.43 9.3E-06 39.0 7.4 62 35-97 60-123 (160)
204 PF06306 CgtA: Beta-1,4-N-acet 93.1 0.17 3.8E-06 45.2 4.9 88 8-97 114-211 (347)
205 TIGR03202 pucB xanthine dehydr 93.0 0.7 1.5E-05 39.1 8.7 85 8-94 42-130 (190)
206 PLN02189 cellulose synthase 93.0 0.11 2.4E-06 54.1 4.2 111 36-148 499-623 (1040)
207 TIGR02665 molyb_mobA molybdopt 92.8 1.3 2.8E-05 37.2 10.0 97 210-319 25-122 (186)
208 TIGR03202 pucB xanthine dehydr 92.7 1.5 3.3E-05 37.0 10.4 103 210-319 24-130 (190)
209 KOG3917|consensus 92.6 0.15 3.2E-06 42.8 3.6 156 194-403 68-228 (310)
210 PRK00155 ispD 2-C-methyl-D-ery 92.5 4.3 9.4E-05 35.4 13.3 43 272-314 81-125 (227)
211 PRK05293 glgC glucose-1-phosph 92.5 0.66 1.4E-05 44.2 8.6 132 271-404 99-237 (380)
212 COG1213 Predicted sugar nucleo 92.3 0.32 6.9E-06 41.8 5.4 90 211-309 30-120 (239)
213 TIGR01208 rmlA_long glucose-1- 92.2 1.8 3.9E-05 40.8 11.1 185 207-405 26-215 (353)
214 PF05060 MGAT2: N-acetylglucos 92.2 5.8 0.00013 36.8 13.6 53 199-253 30-82 (356)
215 COG1208 GCD1 Nucleoside-diphos 92.1 3.2 6.8E-05 39.2 12.4 182 206-405 27-215 (358)
216 PF05045 RgpF: Rhamnan synthes 92.1 13 0.00029 36.7 24.3 80 10-97 1-88 (498)
217 PRK13368 3-deoxy-manno-octulos 92.0 2.5 5.5E-05 37.1 11.2 179 211-403 26-217 (238)
218 PLN02458 transferase, transfer 91.8 0.33 7.1E-06 43.7 5.1 73 5-82 142-224 (346)
219 PF00483 NTP_transferase: Nucl 91.8 0.18 3.9E-06 44.7 3.7 184 206-403 25-222 (248)
220 PRK13385 2-C-methyl-D-erythrit 91.7 7.2 0.00016 34.1 13.6 43 272-314 83-127 (230)
221 PF04666 Glyco_transf_54: N-Ac 91.7 4.2 9E-05 37.0 12.1 114 198-313 50-197 (297)
222 cd02509 GDP-M1P_Guanylyltransf 91.4 3 6.4E-05 37.7 11.2 110 205-323 26-144 (274)
223 PRK14489 putative bifunctional 91.4 0.93 2E-05 42.9 8.2 98 210-320 30-128 (366)
224 cd04182 GT_2_like_f GT_2_like_ 91.3 0.6 1.3E-05 39.1 6.3 52 44-95 72-126 (186)
225 TIGR01207 rmlA glucose-1-phosp 91.1 4.1 8.8E-05 37.1 11.7 179 205-397 24-208 (286)
226 TIGR01105 galF UTP-glucose-1-p 91.0 4.7 0.0001 36.9 12.0 143 259-404 96-256 (297)
227 PRK02726 molybdopterin-guanine 90.9 3.1 6.8E-05 35.5 10.3 89 210-312 31-120 (200)
228 TIGR03310 matur_ygfJ molybdenu 90.8 1.5 3.2E-05 36.9 8.2 50 46-95 74-125 (188)
229 PF01697 Glyco_transf_92: Glyc 90.7 3.2 7E-05 37.6 10.8 109 201-312 2-134 (285)
230 PF09488 Osmo_MPGsynth: Mannos 90.6 3.2 6.8E-05 38.1 10.1 160 8-171 77-282 (381)
231 PF02434 Fringe: Fringe-like; 90.6 0.45 9.8E-06 42.3 4.9 114 285-409 86-209 (252)
232 PLN02195 cellulose synthase A 90.4 0.32 6.9E-06 50.6 4.2 111 36-148 420-544 (977)
233 PF02709 Glyco_transf_7C: N-te 90.3 0.38 8.2E-06 33.9 3.4 48 131-178 17-66 (78)
234 TIGR02665 molyb_mobA molybdopt 90.3 3.4 7.3E-05 34.7 9.9 51 44-94 71-122 (186)
235 PRK15480 glucose-1-phosphate t 90.3 4.3 9.3E-05 37.0 11.1 180 205-399 28-214 (292)
236 PLN02915 cellulose synthase A 90.3 0.34 7.5E-06 50.7 4.3 51 262-312 456-516 (1044)
237 PLN03180 reversibly glycosylat 90.2 0.35 7.6E-06 43.7 3.8 98 198-311 9-126 (346)
238 PLN02638 cellulose synthase A 89.8 0.42 9E-06 50.3 4.5 111 36-148 517-641 (1079)
239 cd02518 GT2_SpsF SpsF is a gly 89.8 2.6 5.6E-05 37.0 9.1 100 210-319 22-122 (233)
240 cd02524 G1P_cytidylyltransfera 89.5 4.8 0.0001 35.8 10.7 120 270-402 101-223 (253)
241 cd00218 GlcAT-I Beta1,3-glucur 89.4 1.8 4E-05 37.1 7.3 70 7-82 31-117 (223)
242 TIGR03310 matur_ygfJ molybdenu 89.2 2.5 5.4E-05 35.5 8.3 100 210-320 23-125 (188)
243 COG1213 Predicted sugar nucleo 89.2 0.37 8E-06 41.4 3.0 74 8-85 47-121 (239)
244 cd02523 PC_cytidylyltransferas 89.1 3.5 7.5E-05 36.0 9.4 86 212-307 29-114 (229)
245 cd02540 GT2_GlmU_N_bac N-termi 89.1 1.8 3.8E-05 37.8 7.6 56 40-95 67-125 (229)
246 cd02503 MobA MobA catalyzes th 89.0 2.2 4.7E-05 35.7 7.7 51 44-95 67-118 (181)
247 cd02538 G1P_TT_short G1P_TT_sh 88.8 7.4 0.00016 34.2 11.3 174 211-397 30-209 (240)
248 KOG3588|consensus 88.7 3.3 7.2E-05 38.0 8.7 167 5-180 256-432 (494)
249 PLN03153 hypothetical protein; 88.7 4 8.7E-05 39.6 9.8 123 61-204 211-339 (537)
250 PLN02400 cellulose synthase 88.5 0.58 1.3E-05 49.3 4.5 53 261-313 524-586 (1085)
251 PF01762 Galactosyl_T: Galacto 88.4 2 4.3E-05 36.5 7.2 163 6-176 19-193 (195)
252 cd04198 eIF-2B_gamma_N The N-t 88.4 11 0.00025 32.4 12.0 104 205-319 25-133 (214)
253 cd04183 GT2_BcE_like GT2_BcbE_ 88.4 5.8 0.00013 34.6 10.3 102 206-316 24-127 (231)
254 TIGR03584 PseF pseudaminic aci 88.3 13 0.00028 32.3 12.3 99 270-373 75-186 (222)
255 PF11397 GlcNAc: Glycosyltrans 88.2 1.7 3.6E-05 40.5 6.9 154 34-187 89-264 (343)
256 PRK00317 mobA molybdopterin-gu 88.2 3.4 7.4E-05 34.9 8.5 50 45-94 73-123 (193)
257 TIGR01099 galU UTP-glucose-1-p 88.1 5.2 0.00011 35.7 10.1 58 261-318 94-153 (260)
258 PRK10122 GalU regulator GalF; 88.1 11 0.00024 34.5 12.2 60 259-319 96-163 (297)
259 TIGR00453 ispD 2-C-methyl-D-er 88.0 6.8 0.00015 33.8 10.4 170 210-405 25-198 (217)
260 COG1209 RfbA dTDP-glucose pyro 87.9 7.2 0.00016 34.6 10.0 142 34-179 72-215 (286)
261 TIGR00466 kdsB 3-deoxy-D-manno 87.6 14 0.00031 32.4 12.3 37 60-96 87-124 (238)
262 PRK14357 glmU bifunctional N-a 87.4 4 8.7E-05 39.9 9.5 102 205-321 22-125 (448)
263 PF01644 Chitin_synth_1: Chiti 87.1 6.5 0.00014 32.0 8.7 52 259-310 108-163 (163)
264 cd06422 NTP_transferase_like_1 87.0 5.4 0.00012 34.6 9.2 61 34-95 69-132 (221)
265 TIGR02623 G1P_cyt_trans glucos 87.0 10 0.00022 33.8 11.1 121 269-403 101-223 (254)
266 PF02434 Fringe: Fringe-like; 86.9 0.83 1.8E-05 40.6 4.0 109 60-179 86-204 (252)
267 cd02508 ADP_Glucose_PP ADP-glu 86.5 8.6 0.00019 32.7 10.0 52 44-96 91-145 (200)
268 PLN02241 glucose-1-phosphate a 86.4 2.4 5.3E-05 41.2 7.3 134 270-404 100-260 (436)
269 cd02518 GT2_SpsF SpsF is a gly 86.4 2.9 6.3E-05 36.6 7.2 42 53-94 80-122 (233)
270 COG0746 MobA Molybdopterin-gua 86.3 3 6.6E-05 35.3 6.9 43 272-314 73-116 (192)
271 cd06425 M1P_guanylylT_B_like_N 86.2 5.3 0.00011 35.0 8.8 86 9-96 48-135 (233)
272 COG2068 Uncharacterized MobA-r 86.2 5.8 0.00013 33.4 8.2 76 8-88 47-125 (199)
273 PLN02248 cellulose synthase-li 85.9 0.63 1.4E-05 49.1 3.0 111 36-148 586-709 (1135)
274 PF03360 Glyco_transf_43: Glyc 85.8 1.3 2.9E-05 37.7 4.4 70 7-81 10-98 (207)
275 COG1207 GlmU N-acetylglucosami 85.7 16 0.00034 34.8 11.5 163 262-425 69-242 (460)
276 PRK14358 glmU bifunctional N-a 85.5 5.2 0.00011 39.5 9.2 181 206-405 30-223 (481)
277 cd02541 UGPase_prokaryotic Pro 85.3 14 0.0003 33.1 11.3 143 260-404 93-244 (267)
278 TIGR03552 F420_cofC 2-phospho- 85.3 3.4 7.3E-05 35.0 6.9 50 46-97 74-126 (195)
279 PRK14502 bifunctional mannosyl 85.3 21 0.00046 36.4 13.1 36 47-83 148-186 (694)
280 cd02516 CDP-ME_synthetase CDP- 84.9 6.5 0.00014 33.9 8.6 44 47-90 79-126 (218)
281 TIGR03552 F420_cofC 2-phospho- 84.7 7 0.00015 33.1 8.6 57 263-322 67-126 (195)
282 PRK00576 molybdopterin-guanine 84.6 10 0.00023 31.5 9.4 90 212-318 15-108 (178)
283 PRK14355 glmU bifunctional N-a 84.4 5.7 0.00012 39.0 8.9 183 205-404 25-220 (459)
284 PF01697 Glyco_transf_92: Glyc 84.3 3.5 7.7E-05 37.3 7.0 78 9-87 34-134 (285)
285 PF09837 DUF2064: Uncharacteri 84.2 13 0.00027 28.9 8.9 84 6-97 9-95 (122)
286 PRK05450 3-deoxy-manno-octulos 84.0 7.1 0.00015 34.4 8.7 61 35-96 63-127 (245)
287 PRK13385 2-C-methyl-D-erythrit 83.9 2.7 5.8E-05 36.8 5.8 47 47-93 83-131 (230)
288 PLN02436 cellulose synthase A 83.7 0.79 1.7E-05 48.2 2.6 51 273-323 550-609 (1094)
289 PRK14359 glmU bifunctional N-a 83.3 28 0.0006 33.7 13.2 177 211-404 29-212 (430)
290 cd06431 GT8_LARGE_C LARGE cata 83.3 33 0.00073 31.0 12.6 104 202-310 3-121 (280)
291 cd06428 M1P_guanylylT_A_like_N 83.3 11 0.00025 33.4 9.7 87 8-96 48-137 (257)
292 TIGR01173 glmU UDP-N-acetylglu 83.1 5.6 0.00012 38.8 8.3 178 206-404 23-213 (451)
293 cd02538 G1P_TT_short G1P_TT_sh 83.1 11 0.00024 33.1 9.4 60 35-94 73-132 (240)
294 PF03552 Cellulose_synt: Cellu 83.1 1.6 3.4E-05 44.2 4.3 111 36-148 167-291 (720)
295 PLN03153 hypothetical protein; 83.0 13 0.00029 36.2 10.2 99 285-404 210-314 (537)
296 COG1210 GalU UDP-glucose pyrop 82.5 6.3 0.00014 35.0 7.2 63 32-94 94-158 (291)
297 PRK14489 putative bifunctional 82.5 8.1 0.00018 36.6 8.7 50 46-95 78-128 (366)
298 PRK09382 ispDF bifunctional 2- 82.0 48 0.001 31.5 16.1 50 272-323 82-132 (378)
299 PF03071 GNT-I: GNT-I family; 81.9 1.5 3.3E-05 41.7 3.6 78 8-85 125-216 (434)
300 PRK14352 glmU bifunctional N-a 81.7 6.1 0.00013 39.0 8.0 53 42-94 77-133 (482)
301 cd04198 eIF-2B_gamma_N The N-t 81.2 23 0.00051 30.4 10.6 59 36-96 77-135 (214)
302 cd02517 CMP-KDO-Synthetase CMP 81.1 11 0.00025 33.0 8.8 60 35-95 63-126 (239)
303 KOG1476|consensus 80.8 6.7 0.00015 35.3 6.9 73 7-85 117-205 (330)
304 PRK02726 molybdopterin-guanine 80.3 6.5 0.00014 33.5 6.7 44 44-87 76-120 (200)
305 PRK14353 glmU bifunctional N-a 80.1 9.9 0.00021 37.1 8.8 98 212-320 33-133 (446)
306 TIGR01207 rmlA glucose-1-phosp 80.0 18 0.00039 32.9 9.8 59 35-94 72-131 (286)
307 TIGR00453 ispD 2-C-methyl-D-er 80.0 13 0.00028 32.0 8.6 43 47-89 76-120 (217)
308 PRK13389 UTP--glucose-1-phosph 79.7 27 0.00059 32.0 10.9 58 261-318 103-167 (302)
309 TIGR03584 PseF pseudaminic aci 79.7 20 0.00043 31.2 9.6 53 45-97 75-132 (222)
310 COG2943 MdoH Membrane glycosyl 79.5 8.1 0.00018 37.5 7.3 95 6-101 178-282 (736)
311 cd04189 G1P_TT_long G1P_TT_lon 79.0 14 0.00031 32.2 8.7 59 36-96 73-132 (236)
312 PRK00155 ispD 2-C-methyl-D-ery 78.5 13 0.00027 32.4 8.2 43 47-89 81-125 (227)
313 PRK14360 glmU bifunctional N-a 78.2 15 0.00033 35.9 9.4 101 206-318 24-127 (450)
314 PLN03133 beta-1,3-galactosyltr 78.0 85 0.0018 32.0 15.1 161 233-402 419-592 (636)
315 COG1208 GCD1 Nucleoside-diphos 78.0 24 0.00052 33.3 10.3 139 34-176 72-211 (358)
316 PF03314 DUF273: Protein of un 78.0 20 0.00042 30.5 8.3 38 59-100 40-79 (222)
317 PF03552 Cellulose_synt: Cellu 77.9 1.6 3.4E-05 44.2 2.4 65 261-325 167-245 (720)
318 PRK15480 glucose-1-phosphate t 77.9 29 0.00062 31.7 10.4 60 35-95 76-136 (292)
319 TIGR00454 conserved hypothetic 77.8 24 0.00052 29.6 9.2 92 210-314 25-118 (183)
320 cd04197 eIF-2B_epsilon_N The N 77.6 34 0.00074 29.5 10.5 101 205-312 25-129 (217)
321 cd02513 CMP-NeuAc_Synthase CMP 77.5 23 0.00051 30.5 9.6 52 46-97 78-135 (223)
322 PF00483 NTP_transferase: Nucl 77.3 6.9 0.00015 34.5 6.2 55 35-90 73-131 (248)
323 PRK14356 glmU bifunctional N-a 77.1 14 0.0003 36.2 8.8 173 211-404 32-221 (456)
324 TIGR00454 conserved hypothetic 77.0 11 0.00024 31.6 7.0 47 43-89 70-118 (183)
325 cd04183 GT2_BcE_like GT2_BcbE_ 77.0 25 0.00054 30.5 9.6 51 33-84 70-121 (231)
326 PF02485 Branch: Core-2/I-Bran 76.9 11 0.00023 33.3 7.3 103 202-309 1-114 (244)
327 PRK14354 glmU bifunctional N-a 76.9 20 0.00043 35.1 9.9 98 206-317 25-125 (458)
328 PRK13368 3-deoxy-manno-octulos 76.4 12 0.00026 32.8 7.5 54 35-89 64-118 (238)
329 cd02523 PC_cytidylyltransferas 76.4 9.4 0.0002 33.2 6.7 70 8-82 45-114 (229)
330 PF03214 RGP: Reversibly glyco 76.1 2.6 5.5E-05 38.3 3.0 84 6-89 33-120 (348)
331 COG1212 KdsB CMP-2-keto-3-deox 75.8 52 0.0011 28.5 13.3 142 261-405 65-222 (247)
332 COG0746 MobA Molybdopterin-gua 75.7 7.6 0.00016 32.9 5.6 53 42-94 67-121 (192)
333 PRK09382 ispDF bifunctional 2- 75.5 14 0.00031 35.0 8.0 43 46-88 81-124 (378)
334 PLN03193 beta-1,3-galactosyltr 75.3 78 0.0017 30.2 15.1 161 231-398 176-346 (408)
335 KOG1022|consensus 75.0 4.9 0.00011 38.8 4.6 113 197-320 440-554 (691)
336 PRK14355 glmU bifunctional N-a 74.5 21 0.00046 35.0 9.3 59 37-95 70-131 (459)
337 PLN02436 cellulose synthase A 74.0 2.6 5.7E-05 44.5 2.9 65 36-100 533-611 (1094)
338 PF01755 Glyco_transf_25: Glyc 73.6 49 0.0011 28.0 10.4 88 223-310 20-110 (200)
339 TIGR01105 galF UTP-glucose-1-p 73.4 40 0.00087 30.8 10.2 61 35-96 97-165 (297)
340 PF13896 Glyco_transf_49: Glyc 73.4 18 0.00038 33.5 7.9 42 270-311 112-153 (317)
341 PLN02728 2-C-methyl-D-erythrit 73.1 41 0.00088 29.9 9.9 44 271-314 101-147 (252)
342 TIGR02623 G1P_cyt_trans glucos 72.9 26 0.00057 31.1 8.8 50 44-94 101-150 (254)
343 KOG4179|consensus 72.7 7.5 0.00016 36.3 5.1 85 1-85 25-135 (568)
344 cd06430 GT8_like_2 GT8_like_2 72.5 79 0.0017 29.0 13.4 104 202-310 3-120 (304)
345 PLN02917 CMP-KDO synthetase 72.3 24 0.00052 32.2 8.4 43 45-88 119-164 (293)
346 cd02524 G1P_cytidylyltransfera 72.2 24 0.00051 31.3 8.3 49 45-94 101-150 (253)
347 PF13896 Glyco_transf_49: Glyc 71.7 5.7 0.00012 36.7 4.2 41 47-87 114-154 (317)
348 PF09837 DUF2064: Uncharacteri 71.5 45 0.00098 25.8 9.3 84 231-322 9-95 (122)
349 PF05212 DUF707: Protein of un 71.5 7.5 0.00016 34.7 4.6 123 59-182 115-248 (294)
350 cd02507 eIF-2B_gamma_N_like Th 70.8 43 0.00093 28.9 9.4 107 206-323 26-141 (216)
351 PRK00560 molybdopterin-guanine 70.5 66 0.0014 27.2 11.1 38 270-307 75-113 (196)
352 PF03360 Glyco_transf_43: Glyc 70.4 18 0.00039 31.0 6.6 71 231-306 9-98 (207)
353 KOG3916|consensus 70.4 12 0.00026 34.2 5.8 117 36-180 185-309 (372)
354 COG2068 Uncharacterized MobA-r 69.8 68 0.0015 27.2 10.2 75 234-313 48-125 (199)
355 COG1210 GalU UDP-glucose pyrop 69.8 24 0.00051 31.5 7.3 71 248-318 85-157 (291)
356 TIGR01099 galU UTP-glucose-1-p 69.7 29 0.00063 30.8 8.4 58 36-93 94-153 (260)
357 PRK00725 glgC glucose-1-phosph 68.9 45 0.00096 32.4 9.9 108 205-321 40-163 (425)
358 cd00505 Glyco_transf_8 Members 68.7 67 0.0015 28.3 10.4 184 213-412 11-217 (246)
359 PRK00844 glgC glucose-1-phosph 68.6 39 0.00084 32.5 9.5 108 205-321 30-151 (407)
360 COG1211 IspD 4-diphosphocytidy 68.3 82 0.0018 27.5 13.3 92 210-310 30-125 (230)
361 COG2266 GTP:adenosylcobinamide 66.1 75 0.0016 26.3 9.8 84 213-311 28-112 (177)
362 cd06432 GT8_HUGT1_C_like The C 66.0 87 0.0019 27.7 10.4 88 220-309 18-118 (248)
363 PF05212 DUF707: Protein of un 65.8 9.6 0.00021 34.1 4.2 125 284-409 115-250 (294)
364 PRK09451 glmU bifunctional N-a 65.6 57 0.0012 31.9 10.1 176 206-402 28-215 (456)
365 TIGR02091 glgC glucose-1-phosp 65.4 30 0.00065 32.6 7.9 47 271-318 93-142 (361)
366 PRK02862 glgC glucose-1-phosph 65.3 40 0.00086 32.8 8.8 50 271-321 98-150 (429)
367 PRK14353 glmU bifunctional N-a 64.7 22 0.00047 34.7 7.0 53 42-95 78-133 (446)
368 TIGR01173 glmU UDP-N-acetylglu 64.5 18 0.00039 35.3 6.5 48 42-89 71-120 (451)
369 cd02509 GDP-M1P_Guanylyltransf 63.7 51 0.0011 29.7 8.7 84 8-96 50-142 (274)
370 PHA01631 hypothetical protein 63.6 6 0.00013 31.9 2.3 66 7-76 17-87 (176)
371 PRK14490 putative bifunctional 63.5 49 0.0011 31.4 8.9 86 210-310 198-284 (369)
372 cd06426 NTP_transferase_like_2 63.5 42 0.0009 28.8 7.9 59 36-96 71-129 (220)
373 PRK14358 glmU bifunctional N-a 63.3 27 0.00059 34.5 7.4 59 37-95 73-134 (481)
374 PLN02400 cellulose synthase 62.8 6.1 0.00013 42.1 2.8 65 36-100 524-602 (1085)
375 PRK00576 molybdopterin-guanine 61.8 26 0.00057 29.0 6.1 50 44-93 55-108 (178)
376 PRK14360 glmU bifunctional N-a 60.9 20 0.00044 35.0 6.0 57 37-93 68-127 (450)
377 PF07507 WavE: WavE lipopolysa 60.8 33 0.00071 31.5 6.8 96 210-311 17-121 (311)
378 COG1861 SpsF Spore coat polysa 60.7 46 0.001 28.7 7.1 83 8-96 45-128 (241)
379 PRK14357 glmU bifunctional N-a 60.0 35 0.00076 33.3 7.5 55 42-96 69-125 (448)
380 cd06532 Glyco_transf_25 Glycos 59.8 80 0.0017 24.5 8.3 75 225-301 20-98 (128)
381 TIGR01208 rmlA_long glucose-1- 59.6 49 0.0011 31.1 8.2 60 36-96 73-132 (353)
382 TIGR01479 GMP_PMI mannose-1-ph 58.7 90 0.002 30.7 10.0 109 206-322 27-144 (468)
383 cd02541 UGPase_prokaryotic Pro 58.3 43 0.00093 29.9 7.3 59 36-94 94-154 (267)
384 KOG0384|consensus 56.8 72 0.0016 34.9 9.1 104 214-328 707-812 (1373)
385 PRK14354 glmU bifunctional N-a 55.7 37 0.00081 33.2 6.9 51 42-92 72-125 (458)
386 PRK14356 glmU bifunctional N-a 55.0 39 0.00084 33.1 6.9 45 42-86 76-124 (456)
387 PRK05293 glgC glucose-1-phosph 54.8 52 0.0011 31.3 7.6 49 46-95 99-150 (380)
388 PF11051 Mannosyl_trans3: Mann 54.4 80 0.0017 28.4 8.3 28 280-308 85-112 (271)
389 KOG0799|consensus 53.4 75 0.0016 30.9 8.3 105 201-310 104-218 (439)
390 PLN02915 cellulose synthase A 53.2 7.3 0.00016 41.3 1.5 66 36-101 455-534 (1044)
391 PLN02728 2-C-methyl-D-erythrit 53.0 1.1E+02 0.0023 27.3 8.7 76 8-89 69-147 (252)
392 PRK14500 putative bifunctional 52.8 1.5E+02 0.0032 27.9 9.9 45 267-311 226-271 (346)
393 TIGR02092 glgD glucose-1-phosp 52.3 46 0.001 31.5 6.8 48 272-320 97-147 (369)
394 PRK10122 GalU regulator GalF; 52.0 87 0.0019 28.6 8.2 60 35-95 97-164 (297)
395 KOG0189|consensus 52.0 65 0.0014 27.3 6.5 94 2-101 66-162 (261)
396 PLN03183 acetylglucosaminyltra 51.1 1.4E+02 0.003 28.9 9.5 95 198-297 76-185 (421)
397 cd04194 GT8_A4GalT_like A4GalT 50.8 1.7E+02 0.0037 25.7 9.8 92 215-308 12-117 (248)
398 PF01128 IspD: 2-C-methyl-D-er 47.3 1.1E+02 0.0024 26.6 7.6 169 211-405 27-200 (221)
399 PF01501 Glyco_transf_8: Glyco 47.1 42 0.0009 29.3 5.3 95 214-309 10-121 (250)
400 PF05045 RgpF: Rhamnan synthes 46.5 72 0.0016 31.7 7.1 79 235-321 1-87 (498)
401 TIGR02091 glgC glucose-1-phosp 46.2 1.5E+02 0.0033 27.8 9.2 48 46-94 93-143 (361)
402 PHA01631 hypothetical protein 44.4 25 0.00055 28.5 2.9 65 232-301 17-87 (176)
403 COG1207 GlmU N-acetylglucosami 44.2 1.5E+02 0.0032 28.5 8.2 59 37-95 69-131 (460)
404 PRK15460 cpsB mannose-1-phosph 43.2 2.8E+02 0.0061 27.4 10.5 110 206-325 32-153 (478)
405 PRK15171 lipopolysaccharide 1, 41.8 3E+02 0.0064 25.7 11.0 107 200-309 24-143 (334)
406 COG1211 IspD 4-diphosphocytidy 40.4 1.5E+02 0.0032 26.0 7.2 74 8-86 49-126 (230)
407 PF02590 SPOUT_MTase: Predicte 40.3 2E+02 0.0044 23.4 7.9 31 285-315 66-97 (155)
408 PLN02241 glucose-1-phosphate a 40.1 61 0.0013 31.5 5.6 51 45-96 100-156 (436)
409 cd02968 SCO SCO (an acronym fo 40.0 1.5E+02 0.0033 23.0 7.1 64 201-265 23-91 (142)
410 PF02348 CTP_transf_3: Cytidyl 38.3 2.5E+02 0.0054 23.9 11.1 56 260-316 61-120 (217)
411 TIGR00334 5S_RNA_mat_M5 ribonu 37.7 74 0.0016 26.3 4.7 64 9-84 4-69 (174)
412 COG1861 SpsF Spore coat polysa 37.4 2.8E+02 0.006 24.1 8.9 99 211-323 27-130 (241)
413 cd02507 eIF-2B_gamma_N_like Th 36.9 2.5E+02 0.0053 24.1 8.4 46 37-84 80-125 (216)
414 KOG2501|consensus 36.7 2.2E+02 0.0048 23.1 7.2 62 3-73 64-128 (157)
415 PF02590 SPOUT_MTase: Predicte 36.3 2E+02 0.0044 23.4 7.1 88 8-96 3-106 (155)
416 PRK13389 UTP--glucose-1-phosph 36.3 1.8E+02 0.0039 26.7 7.7 59 36-94 103-168 (302)
417 KOG4179|consensus 34.9 67 0.0014 30.4 4.5 108 200-308 3-133 (568)
418 COG1107 Archaea-specific RecJ- 34.0 87 0.0019 31.2 5.3 59 207-267 393-451 (715)
419 PF01729 QRPTase_C: Quinolinat 32.8 82 0.0018 26.0 4.4 33 232-264 100-132 (169)
420 PRK09451 glmU bifunctional N-a 32.3 1.3E+02 0.0029 29.3 6.6 52 38-89 72-125 (456)
421 COG1212 KdsB CMP-2-keto-3-deox 32.2 3.5E+02 0.0075 23.7 11.7 122 50-178 78-220 (247)
422 PF04724 Glyco_transf_17: Glyc 31.7 3.1E+02 0.0068 25.9 8.5 23 285-307 178-200 (356)
423 PF09258 Glyco_transf_64: Glyc 31.7 43 0.00094 29.7 2.8 84 8-97 29-112 (247)
424 KOG2451|consensus 31.7 4.6E+02 0.01 24.9 11.1 119 245-373 228-356 (503)
425 PF13707 RloB: RloB-like prote 31.6 2.6E+02 0.0056 23.1 7.5 36 286-321 61-97 (183)
426 PLN02190 cellulose synthase-li 30.8 1.5E+02 0.0033 30.8 6.6 54 199-252 92-148 (756)
427 PF01128 IspD: 2-C-methyl-D-er 30.6 3.6E+02 0.0078 23.4 8.5 72 8-87 45-119 (221)
428 PF03358 FMN_red: NADPH-depend 30.5 2E+02 0.0044 22.8 6.4 40 201-240 2-41 (152)
429 PF01644 Chitin_synth_1: Chiti 30.3 1.2E+02 0.0025 24.9 4.7 49 36-84 110-162 (163)
430 PF01755 Glyco_transf_25: Glyc 30.2 1.9E+02 0.0041 24.3 6.5 90 5-94 27-120 (200)
431 COG0448 GlgC ADP-glucose pyrop 29.8 88 0.0019 29.6 4.5 132 272-405 102-241 (393)
432 KOG2733|consensus 29.6 4.5E+02 0.0098 24.8 8.7 99 199-310 31-129 (423)
433 PF09949 DUF2183: Uncharacteri 29.3 1.1E+02 0.0024 22.7 4.2 26 8-34 65-90 (100)
434 COG1198 PriA Primosomal protei 29.0 1.2E+02 0.0026 31.7 5.7 39 64-102 509-547 (730)
435 PLN02474 UTP--glucose-1-phosph 28.7 5.8E+02 0.013 25.2 10.0 47 207-253 103-150 (469)
436 PF04666 Glyco_transf_54: N-Ac 27.8 94 0.002 28.4 4.3 29 59-87 168-196 (297)
437 cd04197 eIF-2B_epsilon_N The N 27.5 3.9E+02 0.0085 22.8 8.4 51 36-87 78-129 (217)
438 PRK14359 glmU bifunctional N-a 27.3 4.3E+02 0.0093 25.4 9.2 45 46-96 80-125 (430)
439 PF15224 SCRG1: Scrapie-respon 27.0 49 0.0011 22.0 1.7 13 198-210 65-77 (78)
440 KOG1111|consensus 27.0 4.1E+02 0.009 25.1 8.0 47 207-256 204-251 (426)
441 PF11965 DUF3479: Domain of un 26.0 1.5E+02 0.0032 24.4 4.7 34 62-97 32-65 (164)
442 KOG2287|consensus 26.0 1.9E+02 0.004 27.3 6.1 137 30-176 153-300 (349)
443 PF02348 CTP_transf_3: Cytidyl 26.0 4.1E+02 0.0088 22.5 9.8 56 35-91 61-120 (217)
444 KOG1148|consensus 25.6 1.9E+02 0.004 29.1 5.9 68 15-83 228-301 (764)
445 cd01461 vWA_interalpha_trypsin 25.5 3.5E+02 0.0077 21.6 9.7 81 214-295 81-163 (171)
446 PF04724 Glyco_transf_17: Glyc 24.3 2.5E+02 0.0054 26.5 6.5 24 60-83 178-201 (356)
447 TIGR01479 GMP_PMI mannose-1-ph 24.0 4.2E+02 0.0091 26.1 8.4 36 61-96 104-143 (468)
448 cd02037 MRP-like MRP (Multiple 23.4 3.7E+02 0.0081 21.7 6.9 37 263-299 3-41 (169)
449 PLN03180 reversibly glycosylat 23.3 81 0.0018 29.1 2.9 38 49-86 82-126 (346)
450 KOG1467|consensus 23.3 2.5E+02 0.0053 27.5 6.1 54 205-262 362-415 (556)
451 COG0041 PurE Phosphoribosylcar 22.9 78 0.0017 25.5 2.4 29 1-32 25-53 (162)
452 COG3967 DltE Short-chain dehyd 22.7 1.2E+02 0.0026 26.1 3.6 53 203-264 31-83 (245)
453 cd06533 Glyco_transf_WecG_TagA 22.4 4.4E+02 0.0096 21.6 7.6 87 232-323 46-135 (171)
454 PF03314 DUF273: Protein of un 22.1 5.2E+02 0.011 22.3 8.7 37 284-324 40-78 (222)
455 KOG0385|consensus 21.8 8.9E+02 0.019 25.7 9.9 100 216-326 497-598 (971)
456 PRK00103 rRNA large subunit me 21.5 4.5E+02 0.0098 21.4 9.3 36 285-320 66-105 (157)
457 COG3981 Predicted acetyltransf 21.1 1.6E+02 0.0034 24.3 3.9 48 258-305 99-151 (174)
458 PF13768 VWA_3: von Willebrand 20.8 4.3E+02 0.0093 20.9 8.5 53 214-266 79-132 (155)
459 PF06076 Orthopox_F14: Orthopo 20.6 92 0.002 20.3 2.0 45 43-92 7-51 (73)
460 PRK13602 putative ribosomal pr 20.5 2.6E+02 0.0056 19.8 4.5 35 232-267 27-61 (82)
461 PF13733 Glyco_transf_7N: N-te 20.2 1.6E+02 0.0034 23.3 3.6 39 36-74 81-125 (136)
No 1
>KOG2978|consensus
Probab=100.00 E-value=5.2e-41 Score=263.41 Aligned_cols=237 Identities=72% Similarity=1.190 Sum_probs=226.9
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
.+++||++|+|||.++++-++.-+...+.+...++|||+|||+|+|.|.+.++.+++.+..-++.+.+.....|.+.|..
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~ 81 (238)
T KOG2978|consen 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYI 81 (238)
T ss_pred CcceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHH
Confidence 57899999999999999988888888888878899999999999999999999999988888999999999999999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL 358 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
.|+++|+|+|+++||+|..++|..+.++++..+++..|+|.|.|+..+++..+|+..|+.+++..+.+.+..++....+.
T Consensus 82 hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~ll~~~~sdl 161 (238)
T KOG2978|consen 82 HGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARILLNPGVSDL 161 (238)
T ss_pred hhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHhccCCCccC
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhcC
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~ 435 (435)
+|+|+++++++++..-....+.+|-+.+||..|+.+.||.|.+||++++.|..|.|+.+...+..+++.++.+|++|
T Consensus 162 tGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~GeSKLg~~eIv~ylk~l~~Lf~~~ 238 (238)
T KOG2978|consen 162 TGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYGESKLGGKEIVQYLKGLLYLFAFT 238 (238)
T ss_pred cceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeeccccccccHHHHHHHHHHHhhheeeC
Confidence 99999999999999876778899999999999999999999999999999999999999999999999999999876
No 2
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=100.00 E-value=4.8e-37 Score=273.64 Aligned_cols=238 Identities=65% Similarity=1.076 Sum_probs=212.4
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTA 276 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a 276 (435)
...|++|||||+||+++.++.+++++.+.+. ...++|||||||||+|+|.++++++...++...+.++..++|.|++.|
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~-~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a 84 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQ-DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTA 84 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhc-cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHH
Confidence 3468899999999999999999988876543 344899999999999999999999988877667777778889999999
Q ss_pred HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650 277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS 356 (435)
Q Consensus 277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
+|.|++.|+|||++++|+|..++|++|+++++.+.+++.++|.|.+....++..++++.+.+.++..+.+.....+.++.
T Consensus 85 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 164 (243)
T PLN02726 85 YIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVS 164 (243)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999998788999999987766554555667788888888888888888899
Q ss_pred ccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhcC
Q psy3650 357 DLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~ 435 (435)
+.+|+|++|+|+++++++...+..+|.+|+||++++.++|+++.++|+.+.+|..|.|+++..++++++..++.+..||
T Consensus 165 d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s~~~~~~~~~~~~~~~~~~~~~ 243 (243)
T PLN02726 165 DLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKLGGSEIVQYLKGLLYLLLTT 243 (243)
T ss_pred cCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcccCCHHHHHHHHHHHHHHeecC
Confidence 9999999999999999976666778889999999999999999999999999999999999999999999999998887
No 3
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=100.00 E-value=4e-32 Score=250.32 Aligned_cols=235 Identities=24% Similarity=0.418 Sum_probs=199.2
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhc-----CCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCC
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDE-----GNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKK 269 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~ 269 (435)
...+.+|||||+|||++.++++++++.+++.+ ...++|||||||||+|+|.++++++.+.+ ++.++.++..++
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 45789999999999999999999988776541 23479999999999999999999988764 444677888889
Q ss_pred CCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc---CCCceEEeeeEECCC--ceeccchhHHHHHHHHH
Q psy3650 270 KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ---ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGAN 344 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~---~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~ 344 (435)
|.|++.|+|.|++.|+||+|+++|+|..++++.+.++++.+.+ ++.|+|+|.+....+ .....++++++.++..+
T Consensus 147 N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~ 226 (333)
T PTZ00260 147 NKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFH 226 (333)
T ss_pred CCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998863 678999999876432 23445788999999999
Q ss_pred HHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHH
Q psy3650 345 YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQ 423 (435)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~ 423 (435)
.+.+...+..+.|++||+++|+|++++.+.......+|.+|.|++.++.+.|+++.++|+.+..+. .|+.+ .+..++
T Consensus 227 ~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~~~~~--~Sk~~~~~~~~~ 304 (333)
T PTZ00260 227 FIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTEVE--GSKLNVISASIQ 304 (333)
T ss_pred HHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceeeEECC--CCeechHHHHHH
Confidence 999999999999999999999999999985444557888999999999999999999999987643 47777 566677
Q ss_pred HHHHHHHHhh
Q psy3650 424 FAKALLYLFA 433 (435)
Q Consensus 424 ~~~~~~~~f~ 433 (435)
+++.++++++
T Consensus 305 ~~~~l~~~~~ 314 (333)
T PTZ00260 305 MARDILLVRS 314 (333)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 4
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=100.00 E-value=1.9e-31 Score=235.23 Aligned_cols=223 Identities=52% Similarity=0.889 Sum_probs=191.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
||||+||++..+.++++++.++.. ..++|||||||||+|+|.++++++.+.++. +.++..+.|.|++.|+|.|++.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~--~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~--i~~~~~~~n~G~~~a~n~g~~~ 76 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYPR--VRLIVRPGKRGLGSAYIEGFKA 76 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCCCChHHHHHHHHHhCCc--eEEEecCCCCChHHHHHHHHHH
Confidence 689999999999999999977432 367999999999999999999999887764 4555577899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
|++||++++|+|+.++|+++..+++.+..++.++|+|.+.........+++.+...........+.....+..+++|+|+
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFR 156 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence 99999999999999999999999999777788999998877665555566666666666566655556777888999999
Q ss_pred eecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHH
Q psy3650 364 LYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY 430 (435)
Q Consensus 364 ~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~ 430 (435)
+++|+++++++......+|.+|+|+++|+.+.|+++.++|..++.|..|.|+.+++..+++++..++
T Consensus 157 ~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~~~~~~~~~~~~~~~ 223 (224)
T cd06442 157 AYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVEYLKGLLR 223 (224)
T ss_pred hhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCceeHHHHHHHHHHHhh
Confidence 9999999999733445677789999999999999999999999999999999999999999888765
No 5
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.98 E-value=2.1e-30 Score=238.33 Aligned_cols=224 Identities=26% Similarity=0.407 Sum_probs=189.4
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
.+++|||||+|||++.++++++++.+.+.+...++|||+|||||+|+|.++++++.+.. ..+++.+....|.|++.|++
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~-~~~v~~i~~~~n~G~~~A~~ 83 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAP-DSHIVAILLNRNYGQHSAIM 83 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhc-CCcEEEEEeCCCCCHHHHHH
Confidence 56799999999999999999999988777766789999999999999999999876543 23555555677999999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL 358 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
.|++.|+||+++++|+|.+++|+++.++++.+++ +.|+|.|.+..+. .++.+++.++..+.+.+...+.++.|.
T Consensus 84 ~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV~~~r~~~~-----~~~~r~~~s~~~~~l~~~~~g~~~~d~ 157 (325)
T PRK10714 84 AGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE-GYDVVGTVRQNRQ-----DSWFRKTASKMINRLIQRTTGKAMGDY 157 (325)
T ss_pred HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHh-hCCEEEEEEcCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999964 6888888764322 267888899999999999999999999
Q ss_pred ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhc
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFAT 434 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~ 434 (435)
+|++++++|++++.+....+...| +...+...|+++.++|+.+..|..|.|++++++.++++.+.+..|++
T Consensus 158 ~~gfr~~~r~~~~~l~~~~~~~~~-----~~~l~~~~g~~i~evpv~~~~R~~G~Sk~~~~~~~~~~~~~~~~~s~ 228 (325)
T PRK10714 158 GCMLRAYRRHIVDAMLHCHERSTF-----IPILANTFARRAIEIPVHHAEREFGDSKYSFMRLINLMYDLVTCLTT 228 (325)
T ss_pred CcCeEEEcHHHHHHHHHCCCCccH-----HHHHHHHcCCCEEEEEeEecCccCCcCCCCHHHHHHHHHHHHHHhch
Confidence 999999999999998533332222 33557788999999999999999999999999999988887765543
No 6
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.97 E-value=2.1e-30 Score=226.21 Aligned_cols=206 Identities=31% Similarity=0.531 Sum_probs=180.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhc-CCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
||||+||++..+.++++++.++..+ ...++|||+|||||+|+|.++++++..+++.. ++++..++|.|++.|+|.|++
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcccCCCcHHHHHHHHH
Confidence 6899999999999999999876543 45689999999999999999999998887753 567777889999999999999
Q ss_pred hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCce-eccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650 283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS 361 (435)
Q Consensus 283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
.|.+|||+++|+|..++|+++.++++.+.+++.++|.|.+....... ...++.+.+.++....+.....+..+.+.+++
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g 159 (211)
T cd04188 80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCG 159 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccC
Confidence 99999999999999999999999999977778999999988765432 33567778888878888888888888999999
Q ss_pred eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650 362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV 410 (435)
Q Consensus 362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~ 410 (435)
+++|+|+++++++......+|.+|+||+.|+.+.|+++.++|+.+.+|.
T Consensus 160 ~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~ 208 (211)
T cd04188 160 FKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIP 208 (211)
T ss_pred ceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCC
Confidence 9999999999997655667888999999999999999999999999887
No 7
>KOG2978|consensus
Probab=99.97 E-value=1.1e-29 Score=199.90 Aligned_cols=185 Identities=71% Similarity=1.178 Sum_probs=175.0
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
+...++|||||||+|.|+|.++++++++.+...+|.+.+....+|.|.|.-.|+++|+|+|++.||+|..++|.++.+++
T Consensus 31 e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i 110 (238)
T KOG2978|consen 31 EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFI 110 (238)
T ss_pred hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhccCCeEEEEeCccCCCchhHHHHH
Confidence 45678999999999999999999999988877788888888889999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME 162 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 162 (435)
+...++++|+|.|.|+....+..+|+..|+.+++..+.+.+.+.+.+..+..|.|+++++++++.+-......+|.+-+|
T Consensus 111 ~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmE 190 (238)
T KOG2978|consen 111 RLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQME 190 (238)
T ss_pred HHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHhccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred HHHHHHhhcceeEeeeeEeeecccc
Q psy3650 163 MVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 163 l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
+..|+++.|+.+.++|+.+..|.++
T Consensus 191 ll~ra~~~~y~IgEvPitFvdR~~G 215 (238)
T KOG2978|consen 191 LLARARQHGYTIGEVPITFVDRTYG 215 (238)
T ss_pred HHHhccccCceEeecceEEEeeccc
Confidence 9999999999999999999988864
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.97 E-value=1.1e-29 Score=218.65 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=158.8
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HHHH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTA 276 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~~a 276 (435)
|++|||||+||++..+.++|+++.+ |.++++|||||||+|+|+|.++++++...++..++.++..+.+.| ++.+
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~---q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 77 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQ---QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNN 77 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHh---ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHH
Confidence 5799999999999999999998865 667789999999999999999999998888866665555555544 4568
Q ss_pred HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650 277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS 356 (435)
Q Consensus 277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
+|.|++.+++||++++|+|+.++|++|+.++..+.+++.++|.|.
T Consensus 78 ~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~----------------------------------- 122 (196)
T cd02520 78 LIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL----------------------------------- 122 (196)
T ss_pred HHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee-----------------------------------
Confidence 899999999999999999999999999999999877788888875
Q ss_pred ccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHH
Q psy3650 357 DLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKA 427 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~ 427 (435)
...|++++++|+++++++++... ..+.+|++++.|+.++|+++.++|...+++..+.+... +++..||.++
T Consensus 123 ~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 123 CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence 35577899999999999876432 33468999999999999999999998888876665544 4556666553
No 9
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.96 E-value=4.4e-28 Score=215.83 Aligned_cols=226 Identities=17% Similarity=0.231 Sum_probs=163.3
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
|.+|||||+||+++.+.++++++.+ |.++ .+|||||||+|+|+|.++++++... +..+++++.+..|.|++.|+
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~---~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSA---LDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKAC 76 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHh---CcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHH
Confidence 6799999999999999999999865 4443 4899999999999999999887432 23467777777788999999
Q ss_pred HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC--CCceEEeeeEECCCceeccchhHHHHH----HHHHHHHHHhc
Q psy3650 278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE--NLDVVTGTRYVGTGGVYGWDFKRKLVS----RGANYLTQLLL 351 (435)
Q Consensus 278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 351 (435)
|.|++.++||||+++|+|+.++|+++.+++..+.+. +..++.+.....+.. ..+...... ...........
T Consensus 77 n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 77 NYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR---ENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC---ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998743 333444443332211 011111111 11111111111
Q ss_pred CCCcc-ccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHH
Q psy3650 352 RPGVS-DLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY 430 (435)
Q Consensus 352 ~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~ 430 (435)
..... .+.|++++|+|+++++++++.+ ..+.||+|+++|+..+|+++.++|.....+...+-+--+++..||.++.++
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~eD~~l~~rl~~~G~r~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP-FNVTEDADLGLRLARAGYRTGVLNSTTLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc-ccchhhHHHHHHHHHCCceEEEecccccccCcHhHHHHHHHHHHHhccHHH
Confidence 11222 3456778999999999987654 457799999999999999999999765443322223346888999998888
Q ss_pred Hhh
Q psy3650 431 LFA 433 (435)
Q Consensus 431 ~f~ 433 (435)
++.
T Consensus 233 ~~~ 235 (241)
T cd06427 233 TWL 235 (241)
T ss_pred HHH
Confidence 763
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.95 E-value=5.3e-27 Score=215.55 Aligned_cols=207 Identities=18% Similarity=0.161 Sum_probs=149.1
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650 203 TVLLPTYNEK-ENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 203 sivip~~n~~-~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
|||||+||+. +.+.++|+++.+ +.++ .+|||||||||+|+|.+.+.+.........++++..++|.|.+.|+|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~---~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~ 77 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVIN---RTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIA 77 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHh---cCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHH
Confidence 7999999999 999999988865 3332 369999999999999998866322211225667777889999999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCcee-------------ccchhHHHHHHHHHH-
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-------------GWDFKRKLVSRGANY- 345 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~- 345 (435)
|++.|+||||+|+|+|+.++|+||+.|++.+.+++..++++.....+.... .+.....+.......
T Consensus 78 g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (299)
T cd02510 78 GARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER 157 (299)
T ss_pred HHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHh
Confidence 999999999999999999999999999999987776666554322211100 000000000000000
Q ss_pred -HHHHhcCCCccccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650 346 -LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 346 -~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~ 412 (435)
.............+|+|++++|++|+++|++.+... + .||+|+|+|+.++|+++.++|.+.+.|..+
T Consensus 158 ~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 158 RRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred hhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 000001123445678999999999999988766543 2 489999999999999999999988777666
No 11
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.95 E-value=7.5e-27 Score=225.04 Aligned_cols=225 Identities=17% Similarity=0.218 Sum_probs=171.3
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTA 276 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a 276 (435)
...|++||+||+|||++.++++++++.+ |.++++||+||||||+|+|.+.++++.+++++ +.++..++|.|++.|
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~---q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~--v~~i~~~~n~Gka~a 125 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLA---LRYPNYEVIAINDGSSDNTGEILDRLAAQIPR--LRVIHLAENQGKANA 125 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCccHHHHHHHHHHhCCc--EEEEEcCCCCCHHHH
Confidence 3468999999999999999998888754 67789999999999999999999999888774 556666779999999
Q ss_pred HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHH----HHHHHHH--HHH
Q psy3650 277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLV----SRGANYL--TQL 349 (435)
Q Consensus 277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~ 349 (435)
+|.|++.+++||++++|+|+.++|+++.++++.++ +++.++|+|.....+... ...... ....... ...
T Consensus 126 ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 201 (420)
T PRK11204 126 LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRST----LLGRIQVGEFSSIIGLIKRAQR 201 (420)
T ss_pred HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchh----HHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999999999999999999999999984 667888888665544321 111111 0000111 111
Q ss_pred hcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHH
Q psy3650 350 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKAL 428 (435)
Q Consensus 350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~ 428 (435)
.. ......+|++.++||++++++|+..+ ..+.||+|++.|+.++|+++.++|.....+....+-.. .++..|+..+.
T Consensus 202 ~~-~~~~~~~G~~~~~rr~~l~~vgg~~~-~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~ 279 (420)
T PRK11204 202 VY-GRVFTVSGVITAFRKSALHEVGYWST-DMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGG 279 (420)
T ss_pred Hh-CCceEecceeeeeeHHHHHHhCCCCC-CcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCH
Confidence 11 22334578889999999999987543 34679999999999999999999987776655544333 56677777665
Q ss_pred HHHh
Q psy3650 429 LYLF 432 (435)
Q Consensus 429 ~~~f 432 (435)
++.+
T Consensus 280 ~~~l 283 (420)
T PRK11204 280 AEVL 283 (420)
T ss_pred HHHH
Confidence 5543
No 12
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.95 E-value=5.9e-27 Score=207.53 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=158.1
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhC--CceEEEecCCCCCC-HH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLG-LG 274 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~~~~~~~n~g-~~ 274 (435)
|++|||||+||+++.+.++|+++.+ |.++ .+||||+|| |+|+|.++++++..+++ ..+++.+...++.| ++
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~---q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~ 76 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACA---LDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKA 76 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHh---cCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCch
Confidence 5799999999999999999999865 4443 479999997 99999999998765543 33566665665667 68
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHH--H-HHH--H
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN--Y-LTQ--L 349 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--~ 349 (435)
.|+|.|++.+++|||+++|+|+.++|++|+++...+.++++++|.+.....+... ++.......... . ... .
T Consensus 77 ~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 153 (232)
T cd06437 77 GALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY---SLLTRVQAMSLDYHFTIEQVAR 153 (232)
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC---chhhHhhhhhHHhhhhHhHhhH
Confidence 9999999999999999999999999999999888877777787877654433211 122111111011 0 000 1
Q ss_pred hcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650 350 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA 425 (435)
Q Consensus 350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~ 425 (435)
.....+....|++.+|||++++++|++.. ..+.||++|++|+..+|+++.++|-..+++....+-.+ +++.+||.
T Consensus 154 ~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~ 229 (232)
T cd06437 154 SSTGLFFNFNGTAGVWRKECIEDAGGWNH-DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWS 229 (232)
T ss_pred hhcCCeEEeccchhhhhHHHHHHhCCCCC-CcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhc
Confidence 11112223456667899999999987654 45679999999999999999999988888766665555 35566654
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.95 E-value=1.2e-26 Score=218.86 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=165.2
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LG 274 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~ 274 (435)
..|+|||+||+|||++.++++++++.+ |.++++|||++||+|+|.|.++++++.+++|+.+++++..+++.| |.
T Consensus 39 ~~p~VSViiP~~nee~~l~~~L~Sl~~---q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~ 115 (373)
T TIGR03472 39 AWPPVSVLKPLHGDEPELYENLASFCR---QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKV 115 (373)
T ss_pred CCCCeEEEEECCCCChhHHHHHHHHHh---cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHH
Confidence 368899999999999999999988755 778889999999999999999999999999987776665555555 66
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHH------HHHHH
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGA------NYLTQ 348 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 348 (435)
.+.+.+++.|++|+++++|+|+.++|++|++++..+++++.++|++........ .++..+..... .....
T Consensus 116 ~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 116 SNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVP----GFWSRLGAMGINHNFLPSVMVA 191 (373)
T ss_pred HHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCC----CHHHHHHHHHhhhhhhHHHHHH
Confidence 778888999999999999999999999999999999888889988854322211 22222211111 11111
Q ss_pred HhcCCCccccccceeeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHH
Q psy3650 349 LLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAK 426 (435)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~ 426 (435)
...+ ....+.|.++++||++++++|++.. .....||++++.++.++|+++.+.|....++....|-.. +++..|+.+
T Consensus 192 ~~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW~r 270 (373)
T TIGR03472 192 RALG-RARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSR 270 (373)
T ss_pred Hhcc-CCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHHHh
Confidence 1122 2234678889999999999987654 345579999999999999999999977666554333222 344444443
Q ss_pred H
Q psy3650 427 A 427 (435)
Q Consensus 427 ~ 427 (435)
.
T Consensus 271 ~ 271 (373)
T TIGR03472 271 T 271 (373)
T ss_pred h
Confidence 3
No 14
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.95 E-value=2.5e-26 Score=221.60 Aligned_cols=223 Identities=15% Similarity=0.167 Sum_probs=167.4
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..|.+||+||+|||+..++++++++.+ |.++++||++|||||+|+|.+.++++.++++. +.++..++|.|++.|+
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~---q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~--v~vv~~~~n~Gka~Al 147 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALA---QTYTNIEVIAINDGSSDDTAQVLDALLAEDPR--LRVIHLAHNQGKAIAL 147 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHc---CCCCCeEEEEEECCCCccHHHHHHHHHHhCCC--EEEEEeCCCCCHHHHH
Confidence 468899999999999988888887654 67788999999999999999999999888775 4455556789999999
Q ss_pred HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHH---HHHHHHHHHH--Hhc
Q psy3650 278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKL---VSRGANYLTQ--LLL 351 (435)
Q Consensus 278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~ 351 (435)
|.|++.+++||++++|+|+.++|+++.+++..+. +++.++|+|.....+.... ..+.. .........+ ...
T Consensus 148 N~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~~~~ 224 (444)
T PRK14583 148 RMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTL---IGRVQVGEFSSIIGLIKRTQRVY 224 (444)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcc---hhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999875 4567888886655443211 11111 1111111111 122
Q ss_pred CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650 352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY 430 (435)
Q Consensus 352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~ 430 (435)
+ .....+|++.+|+|++++++|+.. .....||.|++.|++.+|+++.+.|-.........+-.. +++..|+..+.+.
T Consensus 225 g-~~~~~sG~~~~~rr~al~~vGg~~-~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~~~ 302 (444)
T PRK14583 225 G-QVFTVSGVVAAFRRRALADVGYWS-PDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGGAE 302 (444)
T ss_pred C-CceEecCceeEEEHHHHHHcCCCC-CCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcHHH
Confidence 2 233457888999999999998754 334689999999999999999999987766654444433 5667777655443
No 15
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.95 E-value=1.2e-26 Score=206.09 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=159.2
Q ss_pred cceEEEEeccCCC-CChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HHH
Q psy3650 200 NKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LGT 275 (435)
Q Consensus 200 ~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~~ 275 (435)
|++|||||+||++ +.++++++++.. |.+++ +|||||||||+|+|.++++++...+ .+.++..+.|.| ++.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~---q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA---IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHAKAG 74 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh---cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCCcHH
Confidence 5799999999986 467788877765 66767 8999999999999999999987654 233333444545 678
Q ss_pred HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHH---HHHHHHHHhc
Q psy3650 276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR---GANYLTQLLL 351 (435)
Q Consensus 276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 351 (435)
++|.|++.+++||++++|+|+.++|++|.+++..+.+ ++.+++.+........... ...+..... ..........
T Consensus 75 ~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
T cd06421 75 NLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFD-WLADGAPNEQELFYGVIQPGRD 153 (234)
T ss_pred HHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcch-hHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999976 6677887766554332110 011111111 1111111111
Q ss_pred CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHHHH
Q psy3650 352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKALL 429 (435)
Q Consensus 352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~~ 429 (435)
........|++++|+|+++++++++. ...+.+|+++++|+.++|+++.++|....++....+-. .+++..|+..+.+
T Consensus 154 ~~~~~~~~g~~~~~r~~~~~~ig~~~-~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 154 RWGAAFCCGSGAVVRREALDEIGGFP-TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGML 231 (234)
T ss_pred hcCCceecCceeeEeHHHHHHhCCCC-ccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCCe
Confidence 12344567888999999999998754 34567999999999999999999998877665444333 3566777665543
No 16
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.95 E-value=2.1e-26 Score=205.06 Aligned_cols=181 Identities=67% Similarity=1.115 Sum_probs=156.8
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
++|||||||||+|+|.++++++.++++...+.++..+.|.|+++|+|.|++.|+|||++++|+|+.++|++|+.+++.+.
T Consensus 40 ~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~ 119 (243)
T PLN02726 40 DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQR 119 (243)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999998887766777777889999999999999999999999999999999999999999998
Q ss_pred cCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHHH
Q psy3650 87 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR 166 (435)
Q Consensus 87 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r 166 (435)
++++++|+|.+........++.+.+++.+.....+.....+.++.+..|++.+|+|++++.++......+|.+|.|++++
T Consensus 120 ~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~ 199 (243)
T PLN02726 120 ETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVR 199 (243)
T ss_pred hcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHH
Confidence 78899999998665444334455566666666666666777788899999999999999999766666788889999999
Q ss_pred HHhhcceeEeeeeEeeecccc
Q psy3650 167 ARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 167 ~~~~g~~~~~~~~~~~~r~~~ 187 (435)
+.+.|+++.++|+.+..|..+
T Consensus 200 ~~~~g~~i~~vp~~~~~r~~g 220 (243)
T PLN02726 200 ASRKGYRIEEVPITFVDRVYG 220 (243)
T ss_pred HHHcCCcEEEeCcEEeCCCCC
Confidence 999999999999998887754
No 17
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.94 E-value=1.1e-25 Score=216.49 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=167.2
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLG 274 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~ 274 (435)
...|++||+||+||+++.+.++++++.+ |.+++ +||+||||||+|+|.++++++.+.++.+.++.. +++.|++
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~---q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka 120 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYN---QTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKA 120 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHh---cCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHH
Confidence 3468999999999999999999998865 55544 799999999999999999999888886555544 4578999
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceec-cchhHHHHHH--HHHHHHHHh
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYG-WDFKRKLVSR--GANYLTQLL 350 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 350 (435)
.|+|.|++.+++||++++|+|+.++|++++++++.+. +++.++++|......+.... ......+..+ ...+.....
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 9999999999999999999999999999999999996 45567777766543221110 0111111111 111111111
Q ss_pred c-------CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHH-HCCCcEEEeeeEEeecccccc-cCCHHHH
Q psy3650 351 L-------RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRAR-QYNYTIGEVPISFVDRVYGES-KLGGTEI 421 (435)
Q Consensus 351 ~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~-~~G~~i~~~p~~~~~~~~~~s-~~~~~~~ 421 (435)
. .......+|+|++|||++++++|++.. ....||+|+++|+. ..|+++.++|.+..++....+ +..+++.
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~-~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~~QR 279 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS-ETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLYTQR 279 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC-CCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHHHHH
Confidence 1 113345688889999999999987543 34689999999996 569999999987776654432 3346667
Q ss_pred HHHHHHHHHHh
Q psy3650 422 FQFAKALLYLF 432 (435)
Q Consensus 422 ~~~~~~~~~~f 432 (435)
.|+.+..++++
T Consensus 280 ~RW~rG~~qv~ 290 (439)
T TIGR03111 280 QRWQRGELEVS 290 (439)
T ss_pred HHHhccHHHHH
Confidence 77766665543
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.94 E-value=8.8e-27 Score=206.00 Aligned_cols=221 Identities=20% Similarity=0.268 Sum_probs=142.4
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HHHH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTA 276 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~~a 276 (435)
|+|+|+||+||+...+.++|+++.+ |.+++++|+||||+|++++.+.++++.+.+|..++.++..+.|.| ++.+
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~---~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a 77 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLA---QDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARA 77 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTT---SHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHc---CCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHH
Confidence 6799999999999988888888764 445789999999999999999999998888876777776666565 7899
Q ss_pred HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH-HHHHHHHHHHhcCCCc
Q psy3650 277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-SRGANYLTQLLLRPGV 355 (435)
Q Consensus 277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 355 (435)
+|.|++.+++|+++++|+|+.++|++|.+++..+.++++++|.+.....+.... ......+. ..............+.
T Consensus 78 ~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (228)
T PF13641_consen 78 LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNW-LTRLQDLFFARWHLRFRSGRRALGV 156 (228)
T ss_dssp HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCE-EEE-TT--S-EETTTS-TT-B----
T ss_pred HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCH-HHHHHHHHHhhhhhhhhhhhcccce
Confidence 999999999999999999999999999999999988899999988866543321 11111110 0000000001111223
Q ss_pred cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHH
Q psy3650 356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFA 425 (435)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~ 425 (435)
..+.|++++|+|+++++++++.. ....+|.+++.|+.++|+++.++|...+.|....+-. .+++..||.
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~ 226 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP-FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWS 226 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S-SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH
T ss_pred eeccCcEEEEEHHHHHHhCCCCC-CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccC
Confidence 33568899999999999987655 6666999999999999999999998887776554433 356666665
No 19
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.94 E-value=6.6e-25 Score=196.96 Aligned_cols=223 Identities=18% Similarity=0.220 Sum_probs=164.2
Q ss_pred ecCCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCC
Q psy3650 193 MSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK 270 (435)
Q Consensus 193 ~~~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n 270 (435)
.......|++|||||+||++..+.++|+++.+ |.+++ +|||||||+|+|+|.++++++.+. .+.++..++|
T Consensus 22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~---q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~ 94 (251)
T cd06439 22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLA---LDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPER 94 (251)
T ss_pred CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHh---CcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCC
Confidence 44445678999999999999999999888865 44444 899999999999999999988654 3556667789
Q ss_pred CCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650 271 LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 350 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
.|++.++|.|++.+++||++++|+|+.++++++.+++..+.+++.++++|......... ..............+....
T Consensus 95 ~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 172 (251)
T cd06439 95 RGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG--SGSGEGLYWKYENWLKRAE 172 (251)
T ss_pred CChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc--cchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998778888888776644321 0111111111112111111
Q ss_pred c-CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHHH
Q psy3650 351 L-RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKAL 428 (435)
Q Consensus 351 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~ 428 (435)
. ........|++++++|++++.. ......+|.+++.++.++|+++.++|....++..+.+.. .+++..|+..+-
T Consensus 173 ~~~~~~~~~~g~~~~~rr~~~~~~----~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~ 248 (251)
T cd06439 173 SRLGSTVGANGAIYAIRRELFRPL----PADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAGN 248 (251)
T ss_pred HhcCCeeeecchHHHhHHHHhcCC----CcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhcc
Confidence 1 1223446777888999999822 223446899999999999999999998887776665443 355566665543
No 20
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.94 E-value=2.1e-25 Score=198.21 Aligned_cols=220 Identities=15% Similarity=0.205 Sum_probs=155.7
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCCC-HHHHHHH
Q psy3650 203 TVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLG-LGTAYMH 279 (435)
Q Consensus 203 sivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~g-~~~a~n~ 279 (435)
|||||+||++ +.++++++++.+ |.++++|||||||+|+|+|. +.++++.++.+. ++.++...+|.| ++.|+|.
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~---q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~-~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAA---LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGE-RFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCC-cEEEEEcCCCCCCchHHHHH
Confidence 7999999998 678888888764 66778999999999999975 667777665432 455555566677 5899999
Q ss_pred HHhhcc--CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH-HHHHHHH-Hh--cCC
Q psy3650 280 GLKYAT--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR-GANYLTQ-LL--LRP 353 (435)
Q Consensus 280 g~~~a~--~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~~ 353 (435)
|++.+. +||++++|+|+.++|++|.+++..++++++++|.+......... ..+...... ....+.. .. ...
T Consensus 77 g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (236)
T cd06435 77 ALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEE---SLFKRMCYAEYKGFFDIGMVSRNER 153 (236)
T ss_pred HHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCc---cHHHHHHhHHHHHHHHHHhcccccc
Confidence 999985 69999999999999999999999998777888877543332211 111111111 0011100 00 111
Q ss_pred CccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650 354 GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY 430 (435)
Q Consensus 354 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~ 430 (435)
......|++++++|++++++|++... .+.+|+++++|+.+.|+++.++|....+.....+-.. .++..|+....++
T Consensus 154 ~~~~~~g~~~~~rr~~~~~iGgf~~~-~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~ 230 (236)
T cd06435 154 NAIIQHGTMCLIRRSALDDVGGWDEW-CITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQ 230 (236)
T ss_pred CceEEecceEEEEHHHHHHhCCCCCc-cccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhh
Confidence 22335677899999999999876543 3679999999999999999999987776544444333 3445666655544
No 21
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.94 E-value=4.9e-25 Score=200.42 Aligned_cols=228 Identities=22% Similarity=0.268 Sum_probs=161.3
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..+++|||||+||+++.+.++++++.+++.+ ....|||||||||+|.|.++++++....-.....+...+.|.|++.|+
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~ 107 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEAL 107 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHH
Confidence 4689999999999999999999999875543 335799999999999999999887433111001111136689999999
Q ss_pred HHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHh-cCCCceEEeeeEECCC--ceeccchhHHHHHHHHHHHHHHhcC-
Q psy3650 278 MHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQ-QENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLR- 352 (435)
Q Consensus 278 n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 352 (435)
|.|+..+++|+++++|+|.. ++|+++.+++..+. +++.++|.|....... ..................+.+....
T Consensus 108 ~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~~~~~ 187 (306)
T PRK13915 108 WRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNLLRPE 187 (306)
T ss_pred HHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999999999996 89999999999986 6778999886432210 0000000111112222222222211
Q ss_pred -CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHH-HCCC-cEEEeeeEEeecccccccCCHHHHHHHHHHHH
Q psy3650 353 -PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRAR-QYNY-TIGEVPISFVDRVYGESKLGGTEIFQFAKALL 429 (435)
Q Consensus 353 -~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~-~~G~-~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~ 429 (435)
..+.++.+|+++++|++++++. ...+|..+.++++.+. +.|+ ++.++++..+.|.. ...+.+.+++..++
T Consensus 188 l~~i~dp~sG~~a~rr~~l~~l~---~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~----~~~~~~~~m~~~i~ 260 (306)
T PRK13915 188 LAGFVQPLGGEYAGRRELLESLP---FVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRN----QPLRALGRMARQII 260 (306)
T ss_pred hhcccCcchHhHHHHHHHHHhCC---CCCCCeehHHHHHHHHHHhCcCceEEEEecccccCC----CCHHHHHHHHHHHH
Confidence 3456778888999999999983 3466888999999976 5687 89999987665553 23566777777776
Q ss_pred HHhh
Q psy3650 430 YLFA 433 (435)
Q Consensus 430 ~~f~ 433 (435)
+.++
T Consensus 261 ~~~~ 264 (306)
T PRK13915 261 ATAL 264 (306)
T ss_pred HHHH
Confidence 6654
No 22
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.93 E-value=9.6e-25 Score=206.59 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=149.9
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCC-CeEEEEEeCCCCcchHHHHHHHHHHhCCc-eEEEecCC----CC
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNY-PYEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPRK----KK 270 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~i~~~~~~----~n 270 (435)
...|++|||||+|||++.++++++++.+ |.++ ++|||||||+|+|+|.++++++.+++|.. +++++..+ .+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~---q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLE---QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHh---CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 3468999999999999999999998865 5565 69999999999999999999998777622 35555432 34
Q ss_pred CCHHHHHHHHHhhcc-----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH
Q psy3650 271 LGLGTAYMHGLKYAT-----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY 345 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~-----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (435)
.|++.|+|.|++.|+ +|+++++|+|+.++|+++++++..+++++.+++.+.......+ .+..........
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~-----~~~~~~~~~~~~ 188 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCES-----FWEKLLIPAFVF 188 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCC-----HHHHHHHHHHHH
Confidence 689999999999999 9999999999999999999999999887888887654333221 222221111111
Q ss_pred HHHHh------c--CCCccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650 346 LTQLL------L--RPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 346 ~~~~~------~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
..... . ........|+|++++|++++++|++.+. ..+.||.+++.|+.++|+++...+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 189 FFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred HHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEe
Confidence 11100 0 1123335789999999999999876542 456799999999999999998865
No 23
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.93 E-value=2.8e-25 Score=192.59 Aligned_cols=195 Identities=19% Similarity=0.271 Sum_probs=146.5
Q ss_pred cceEEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 200 NKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 200 ~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
|++|||||+||+. +.++++|+++.+ |.++++|||||||||+|++. ++++.+..+++. +.++..++|.|.+.++
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~---q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~a~ 75 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA---QTYPNWELCIADDASTDPEVKRVLKKYAAQDPR--IKVVFREENGGISAAT 75 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCC--EEEEEcccCCCHHHHH
Confidence 5799999999999 989998888865 66678999999999999754 556666665553 5555677899999999
Q ss_pred HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCC-ceeccchhHHHHHHHHHHHHHHhcCCCc
Q psy3650 278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTG-GVYGWDFKRKLVSRGANYLTQLLLRPGV 355 (435)
Q Consensus 278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (435)
|.|++.+++||++++|+|+.++|+++..++..+ .+++.+++.+....... .....+....... .......
T Consensus 76 n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-- 147 (202)
T cd04184 76 NSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWS------PDLLLSQ-- 147 (202)
T ss_pred HHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCC------HHHhhhc--
Confidence 999999999999999999999999999999998 67778888775533221 1111111100000 0011111
Q ss_pred cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEee
Q psy3650 356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 408 (435)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~ 408 (435)
...+++++++|++++++|++.+.....+|+||++|+.++|+++.++|....+
T Consensus 148 -~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 148 -NYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred -CCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhhh
Confidence 2345667999999999987766555678999999999999999999975543
No 24
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.93 E-value=6.2e-25 Score=191.62 Aligned_cols=180 Identities=30% Similarity=0.507 Sum_probs=154.2
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
..++|||||||||+|+|.++++++.++++.. ++++..+.|.|+++|+|.|++.|.||||+++|+|+.++|++++.+++.
T Consensus 28 ~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~ 106 (211)
T cd04188 28 SFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEA 106 (211)
T ss_pred CCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcccCCCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3569999999999999999999998877753 566667889999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeecCCCc-cCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHH
Q psy3650 85 QQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEM 163 (435)
Q Consensus 85 ~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 163 (435)
+.+++.++|+|++....... ....+.+.+...........+.+..+.+..+++.+|+++++.+++......+|.+|.|+
T Consensus 107 ~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el 186 (211)
T cd04188 107 LKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVEL 186 (211)
T ss_pred HhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhccceEeeHHH
Confidence 87788999999987664432 33456666776666666666677788888999999999999998655566788889999
Q ss_pred HHHHHhhcceeEeeeeEeeecc
Q psy3650 164 VIRARQYNYTIGEVPISFVDRV 185 (435)
Q Consensus 164 ~~r~~~~g~~~~~~~~~~~~r~ 185 (435)
..|+.+.|+++.++|+.+..|.
T Consensus 187 ~~r~~~~g~~~~~vpi~~~~~~ 208 (211)
T cd04188 187 LVLARRLGYPIEEVPVRWVEIP 208 (211)
T ss_pred HHHHHHcCCeEEEcCcceecCC
Confidence 9999999999999999988876
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.93 E-value=5.1e-25 Score=188.14 Aligned_cols=185 Identities=40% Similarity=0.679 Sum_probs=156.9
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
|+||+||+...+.++|+++.++..+ ...+|||||||+|+|++.+.++++..+.+. ++++..++|.|++.|+|.|++.
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~-~~~~eiivvd~~s~d~~~~~~~~~~~~~~~--~~~~~~~~n~G~~~a~n~g~~~ 77 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEE-GYDYEIIVVDDGSTDGTAEIARELAARVPR--VRVIRLSRNFGKGAAVRAGFKA 77 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhcc-CCCEEEEEEcCCCCCChHHHHHHHHHhCCC--eEEEEccCCCCccHHHHHHHHH
Confidence 6899999999999999999875432 458999999999999999999999887764 4566678899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
|+|||++++|+|+.+.|++|++++..+.+.+.++|+|.+....+. ...+..+.+.............+..+....|+++
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGG-AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFR 156 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCc-ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCcee
Confidence 999999999999999999999999997777899999998776654 3345666666666666666667788888899999
Q ss_pred eecHHHHHHhhhcccCcccchhhHHHHHH
Q psy3650 364 LYKKQVLENLVSSCVSKGYVFQMEMVIRA 392 (435)
Q Consensus 364 ~~~r~~~~~~~~~~~~~~~~~D~el~lr~ 392 (435)
+++|+++++++......+|.+|+|+++|+
T Consensus 157 ~~~r~~~~~i~~~~~~~~~~~~~~~~~~~ 185 (185)
T cd04179 157 LFRREVLEALLSLLESNGFEFGLELLVGA 185 (185)
T ss_pred eeHHHHHHHHHhhccccCcceeeEeeecC
Confidence 99999999997556677888888988764
No 26
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.93 E-value=7.6e-25 Score=196.36 Aligned_cols=219 Identities=19% Similarity=0.141 Sum_probs=162.3
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
++|||||+||+.+.+.++++++.+ |.+ .++|||||||+|+|++.+.++++..+.+. +.++.++ +.|.+.|+|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~---q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~--v~~i~~~-~~~~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLN---QSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPR--IRLIDNP-KRIQSAGLN 74 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHh---ccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCe--EEEEeCC-CCCchHHHH
Confidence 489999999999999999988865 444 57899999999999999999999877554 5555554 668999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHH-------HHhc
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT-------QLLL 351 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 351 (435)
.|++.+++||++++|+|+.++|++|+++++.+.+++.+++.|.......... .. .......... ....
T Consensus 75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~ 149 (249)
T cd02525 75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKF----QK-AIAVAQSSPLGSGGSAYRGGA 149 (249)
T ss_pred HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChH----HH-HHHHHhhchhccCCccccccc
Confidence 9999999999999999999999999999999888888888888765543311 11 1111111000 0000
Q ss_pred CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeeccccccc-CCHHHHHHHHHHHHH
Q psy3650 352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK-LGGTEIFQFAKALLY 430 (435)
Q Consensus 352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~-~~~~~~~~~~~~~~~ 430 (435)
........|++.+++|++++++++..+.....+|.++++|+.++|+++.++|....++....|- .-+++.+++....++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~ 229 (249)
T cd02525 150 VKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRAR 229 (249)
T ss_pred cccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhHH
Confidence 1102245677889999999999876665566799999999999999999999877666544432 224555666555543
No 27
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.93 E-value=2.2e-24 Score=191.17 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=146.6
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
|++|||||+||+++.++++++++.++..+.+.++|||||||||+|+|.++++++.... ++.++.. +|.|.+.|+|.
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~-~~~G~~~A~N~ 76 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSE-PDNGIYDAMNK 76 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEEC-CCCCHHHHHHH
Confidence 6899999999999999999999987656667789999999999999999999875432 3555554 46799999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccc
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLT 359 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
|++.|+||||+++|+|+...|+.++.+.....+++.++++|.+....+... ...+.... ... ... .. ...
T Consensus 77 Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~--~~~~~~~~---~~~---~~~-~~-~~~ 146 (248)
T PRK10063 77 GIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGH--KIKRSAKP---GWY---IYH-SL-PAS 146 (248)
T ss_pred HHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCc--EEEEccCC---hhH---Hhc-CC-CCC
Confidence 999999999999999999888876544433345566778887754322110 01110000 000 000 11 123
Q ss_pred cceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEe-ecccccccCCH
Q psy3650 360 GSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFV-DRVYGESKLGG 418 (435)
Q Consensus 360 ~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~-~~~~~~s~~~~ 418 (435)
+...+++++.++.. ++.....+.+|+|+.+|+..+|+++.++|.... ++.+|.|..+.
T Consensus 147 ~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~~g~S~~~~ 205 (248)
T PRK10063 147 HQAIFFPVSGLKKW-RYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSEFSMGGVSTTNN 205 (248)
T ss_pred CcEEEEEHHHHhcC-CCCcccchHHhHHHHHHHHHcCCcEEEcCceeEEEeCCCCcCchH
Confidence 34568899988753 344555677999999999999999999998664 46777776653
No 28
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.93 E-value=2.4e-24 Score=189.08 Aligned_cols=198 Identities=12% Similarity=0.110 Sum_probs=139.9
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCC-CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEec----CCCCCCHHHHHH
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNY-PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP----RKKKLGLGTAYM 278 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~----~~~n~g~~~a~n 278 (435)
||||+||+++.++++|+++.. |.++ ++|||||||||+|+|.++++++.++.+..++.++. .+.+.|.+.|+|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~---q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N 77 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQ---QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN 77 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHh---CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence 689999999999999999865 5555 59999999999999999999988776544444432 345689999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHH-HHHH-HhcCCCcc
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN-YLTQ-LLLRPGVS 356 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 356 (435)
.|++.|+|||++++|+|+.++|+++.+++..+.+.+..++.+.......... ..+......... .+.. .......
T Consensus 78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (219)
T cd06913 78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDST--ERYTRWINTLTREQLLTQVYTSHGP- 154 (219)
T ss_pred HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccc--hhhHHHHHhcCHHHHHHHHHhhcCC-
Confidence 9999999999999999999999999999988876555544433322221111 111111111111 1111 1111111
Q ss_pred ccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEe
Q psy3650 357 DLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFV 407 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~ 407 (435)
......++++|++++++|++.+. ..+.+|++|++|+.++|.++.++|....
T Consensus 155 ~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 206 (219)
T cd06913 155 TVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLL 206 (219)
T ss_pred ccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceee
Confidence 11122257999999999876554 4566999999999999999999997553
No 29
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=200.17 Aligned_cols=179 Identities=24% Similarity=0.404 Sum_probs=154.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHh--CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
.++|||||||||+|+|.++++++++++ +..++.++..+.|.|+++|+|.|+..|+||||+++|+|+.++|+.++.+++
T Consensus 106 ~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~ 185 (333)
T PTZ00260 106 FKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLED 185 (333)
T ss_pred CCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHH
Confidence 369999999999999999999998764 444577777889999999999999999999999999999999999999999
Q ss_pred HHhc---CCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCch
Q psy3650 84 LQQQ---ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV 158 (435)
Q Consensus 84 ~~~~---~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
.+.+ +++|+|+|++..... ....+++.+++....++.....+.+..+.|..||+++|++++++.+.......+|.
T Consensus 186 ~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~ 265 (333)
T PTZ00260 186 IMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWA 265 (333)
T ss_pred HHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCcc
Confidence 8864 678999999865432 23455678888888888888888899999999999999999999874444557888
Q ss_pred hhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650 159 FQMEMVIRARQYNYTIGEVPISFVDR 184 (435)
Q Consensus 159 ~d~~l~~r~~~~g~~~~~~~~~~~~r 184 (435)
+|.|+..++.+.|+++.++|+.+..+
T Consensus 266 fd~Ell~~a~~~g~~I~EvPv~~~~~ 291 (333)
T PTZ00260 266 FDIEIVMIAQKLNLPIAEVPVNWTEV 291 (333)
T ss_pred chHHHHHHHHHcCCCEEEEceeeEEC
Confidence 99999999999999999999987554
No 30
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.93 E-value=4.6e-24 Score=181.49 Aligned_cols=179 Identities=31% Similarity=0.482 Sum_probs=151.5
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
||||+||++..+.++++++.++..|....+|||||||||+|+|.++++.+..++++ +.++...+|.|++.|+|.|++.
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--i~~i~~~~n~G~~~a~n~g~~~ 78 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPR--VKVIRLSRNFGQQAALLAGLDH 78 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEEecCCCCcHHHHHHHHHh
Confidence 68999999999999999999888777778999999999999999999999887774 5556667899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
+.+||++++|+|..++++++.+++..+ +++.++|.|.+..... +....+..+..........+..+.+..|+++
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVVYGVRKNRKE-----SWLKRLTSKLFYRLINKLSGVDIPDNGGDFR 152 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE
Confidence 999999999999999999999999985 4578899998765541 3455555665555666667788889999999
Q ss_pred eecHHHHHHhhhcccCcccchhhHHHH
Q psy3650 364 LYKKQVLENLVSSCVSKGYVFQMEMVI 390 (435)
Q Consensus 364 ~~~r~~~~~~~~~~~~~~~~~D~el~l 390 (435)
+|+|+++++++++.+...|..+.+..+
T Consensus 153 ~~~r~~~~~i~~~d~~~~~~~~~~~~~ 179 (181)
T cd04187 153 LMDRKVVDALLLLPERHRFLRGLIAWV 179 (181)
T ss_pred EEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence 999999999998888888876655543
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.93 E-value=4.6e-24 Score=188.78 Aligned_cols=200 Identities=19% Similarity=0.197 Sum_probs=145.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC--CCCCHHHHHHH
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMH 279 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~--~n~g~~~a~n~ 279 (435)
||||+||+.+.++++|+++.+ |.+++ +|||||||||+|+|.+.++ +....+..++.++..+ .+.|++.++|.
T Consensus 1 viip~~n~~~~l~~~l~sl~~---q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~ 76 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSA---LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTT 76 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHh---CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHH
Confidence 689999999999999998865 55666 9999999999999999887 4444444466666554 57899999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH--HHHHhcCCCccc
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY--LTQLLLRPGVSD 357 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 357 (435)
|++.+++||++++|+|+.++|++|++++..+.+++.++++|........... .....+....... ......+.. ..
T Consensus 77 g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~ 154 (229)
T cd04192 77 AIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLL-AKFQRLDWLSLLGLIAGSFGLGKP-FM 154 (229)
T ss_pred HHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHH-HHHHHHHHHHHHHHHhhHHHhcCc-cc
Confidence 9999999999999999999999999999988877888888876554222100 0111111100000 111111222 23
Q ss_pred cccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCC-cEEEee--eEEeec
Q psy3650 358 LTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNY-TIGEVP--ISFVDR 409 (435)
Q Consensus 358 ~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~-~i~~~p--~~~~~~ 409 (435)
..|++++++|++++++|++.+. ....+|.++++|+..+|+ ++.+++ ....++
T Consensus 155 ~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~ 210 (229)
T cd04192 155 CNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTT 210 (229)
T ss_pred cccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheec
Confidence 4577789999999999876543 455689999999999999 888774 444443
No 32
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.92 E-value=8.3e-24 Score=195.15 Aligned_cols=206 Identities=18% Similarity=0.267 Sum_probs=149.5
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
.|.+|||||+||+++.++++|+++.. |++.++|||||||||+|+|.++++++.++++. +.++. .+|.|.+.|+|
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~---Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~--i~vi~-~~n~G~~~arN 78 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIA---QTWTALEIIIVNDGSTDNSVEIAKHYAENYPH--VRLLH-QANAGVSVARN 78 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEE-CCCCChHHHHH
Confidence 58899999999999999999988865 77789999999999999999999999888775 44554 45999999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeE--ECCCceeccchh--HHHHH----HHHHHHHHHh
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY--VGTGGVYGWDFK--RKLVS----RGANYLTQLL 350 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~--~~~~~----~~~~~~~~~~ 350 (435)
.|++.|+||||+|+|+|+.+.|+.++.+++.+.+++.+++.+... ..++... .+.. ..... ....++....
T Consensus 79 ~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l 157 (328)
T PRK10073 79 TGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTGET-WQSIPSDRLRSTGVLSGPDWLRMAL 157 (328)
T ss_pred HHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCCcc-ccccccccccccceechHHHHHHHH
Confidence 999999999999999999999999999999988778888876432 2221110 0000 00000 0112222222
Q ss_pred cCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEE-eecccc
Q psy3650 351 LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF-VDRVYG 412 (435)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~-~~~~~~ 412 (435)
....+... ..+.+++|+++++.+.........+|.++..++...+.++.++|... .++.++
T Consensus 158 ~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~~ 219 (328)
T PRK10073 158 SSRRWTHV-VWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLYKYYLHD 219 (328)
T ss_pred hhCCCCcc-HhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCEEEEEecC
Confidence 22222222 23468999999998642223333589999999999999999999643 344333
No 33
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.92 E-value=5.8e-24 Score=213.15 Aligned_cols=226 Identities=17% Similarity=0.204 Sum_probs=158.6
Q ss_pred CCCcceEEEEeccCCCCC-hHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC-CCC
Q psy3650 197 SVKNKYTVLLPTYNEKEN-LPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLG 272 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~-l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~-n~g 272 (435)
...|+++|+||+|||+.. +++++.++. .+.++ ++||+|+||||+|++.+.++++ .+.++..++ +.|
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l---~~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n~~g 326 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASL---GIDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTHEHA 326 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHH---hccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCCCcc
Confidence 346899999999999864 456665554 34444 5899999999999998887764 344444444 446
Q ss_pred HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCceeccch--hHHHHH---HHHHHH
Q psy3650 273 LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDF--KRKLVS---RGANYL 346 (435)
Q Consensus 273 ~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~ 346 (435)
|+.|+|.|++.++||||+++|+|..+.++++.+++..+ ++++.++|.++....+.+...... .+...+ .+....
T Consensus 327 KAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~i 406 (852)
T PRK11498 327 KAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLV 406 (852)
T ss_pred hHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHH
Confidence 99999999999999999999999999999999999875 567788888766544322111110 111111 111111
Q ss_pred HHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650 347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA 425 (435)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~ 425 (435)
.............|+|.++||++++++|+.... ...||+|+++|++++|+++.++|..........+-.. .++..|++
T Consensus 407 q~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~-titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWa 485 (852)
T PRK11498 407 QDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE-TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWA 485 (852)
T ss_pred HhHHHhhcccccccceeeeEHHHHHHhcCCCCC-ccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHH
Confidence 111111122345788899999999999886543 5789999999999999999999865554433333333 46788888
Q ss_pred HHHHHHhh
Q psy3650 426 KALLYLFA 433 (435)
Q Consensus 426 ~~~~~~f~ 433 (435)
.+.++.|.
T Consensus 486 rG~lQi~r 493 (852)
T PRK11498 486 RGMVQIFR 493 (852)
T ss_pred HHHHHHHH
Confidence 88887765
No 34
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.92 E-value=2.6e-24 Score=186.32 Aligned_cols=198 Identities=22% Similarity=0.282 Sum_probs=146.9
Q ss_pred EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
|||||+||+++.++++|.++.+ |..+++|||||||+|+|++.++++++... .+ .+...+|.|++.++|.|++
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~---q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~-~~~~~~~~g~~~a~n~~~~ 72 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLS---QTYPNIEYIVIDGGSTDGTVDIIKKYEDK----IT-YWISEPDKGIYDAMNKGIA 72 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHh---CCCCCceEEEEeCCCCccHHHHHHHhHhh----cE-EEEecCCcCHHHHHHHHHH
Confidence 6899999999999999988865 66677999999999999999999887553 22 3335678999999999999
Q ss_pred hccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650 283 YATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS 361 (435)
Q Consensus 283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
.|++||++++|+|+.+.++++..++..+ ..++.+++.|................ . ......... .. ....++
T Consensus 73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~-~~~~~~~~~-~~-~~~~~~ 145 (202)
T cd06433 73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----P-PPFLDKFLL-YG-MPICHQ 145 (202)
T ss_pred HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----C-cchhhhHHh-hc-CcccCc
Confidence 9999999999999999999999999554 45678889887765432211111111 0 000111111 11 123344
Q ss_pred eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEee-ccccccc
Q psy3650 362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD-RVYGESK 415 (435)
Q Consensus 362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~-~~~~~s~ 415 (435)
+++++|+++++++++.+...+.+|.|+++|+.+.|+++.++|....+ +.++.|.
T Consensus 146 ~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~~~~~~~s~ 200 (202)
T cd06433 146 ATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAAFRLGGVSS 200 (202)
T ss_pred ceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhhheecCCcC
Confidence 57899999999986555556678999999999999999999987654 4544443
No 35
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.92 E-value=9.5e-24 Score=186.09 Aligned_cols=180 Identities=53% Similarity=0.884 Sum_probs=148.2
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 85 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 85 (435)
.++|||||||||+|+|.++++++.+.++. +.++..+.|.|++.|+|.|++.|+||||+++|+|+.++|++++.+++.+
T Consensus 26 ~~~eiiiVDd~S~d~t~~~~~~~~~~~~~--i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 103 (224)
T cd06442 26 IDYEIIVVDDNSPDGTAEIVRELAKEYPR--VRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQ 103 (224)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHhCCc--eEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999887765 4445578899999999999999999999999999999999999999998
Q ss_pred hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHH
Q psy3650 86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVI 165 (435)
Q Consensus 86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 165 (435)
.+++.++|+|.+.........+.+.++................+..+..+++.+++|+++++++......++.+++|++.
T Consensus 104 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~ 183 (224)
T cd06442 104 LEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLV 183 (224)
T ss_pred hcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHH
Confidence 77888999998876655544555555555544444444445667788889999999999999973344567778899999
Q ss_pred HHHhhcceeEeeeeEeeecccc
Q psy3650 166 RARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 166 r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
|+.+.|+++..+|..+..|..+
T Consensus 184 ~~~~~g~~i~~~p~~~~~~~~g 205 (224)
T cd06442 184 RARRLGYRIVEVPITFVDREHG 205 (224)
T ss_pred HHHHcCCeEEEeCeEEeccCCC
Confidence 9999999999999887776644
No 36
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.92 E-value=3.3e-24 Score=190.47 Aligned_cols=215 Identities=19% Similarity=0.207 Sum_probs=153.5
Q ss_pred ceEEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650 201 KYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 201 ~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
.||||||+||+. +.+.++++++.+ |. ++|||||||+|+|++.+.+++.. ..+ .+.++ ..++.|++.|+|.
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~---q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~-~~~~~g~~~a~n~ 71 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILR---QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVI-TVPHPGKRRALAE 71 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHh---CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEE-ecCCCChHHHHHH
Confidence 489999999999 999999998876 43 67999999999999988875432 233 33333 3568899999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH---H--HHHhcCCC
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY---L--TQLLLRPG 354 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~ 354 (435)
|+..+++|||+++|+|+.+++++|++++..+.+++.++|+|.....+... ..+.......... . ........
T Consensus 72 g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (235)
T cd06434 72 GIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRD---SKWSFLAAEYLERRNEEIRAAMSYDGG 148 (235)
T ss_pred HHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcc---cHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999998778888888765544321 1111111111111 1 11112223
Q ss_pred ccccccceeeecHHHHHHhhhcc---------cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHH
Q psy3650 355 VSDLTGSFRLYKKQVLENLVSSC---------VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQF 424 (435)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~~~~~---------~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~ 424 (435)
....+|+|++++|+++++++... +.....+|.+++.++.++|+++.+.|.....+....+-.. +++..|+
T Consensus 149 ~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw 228 (235)
T cd06434 149 VPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQLRW 228 (235)
T ss_pred EEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHhhhh
Confidence 44567889999999999875321 1234668999999999999999999976655543333322 3445555
Q ss_pred HHH
Q psy3650 425 AKA 427 (435)
Q Consensus 425 ~~~ 427 (435)
..+
T Consensus 229 ~~~ 231 (235)
T cd06434 229 SRS 231 (235)
T ss_pred hhc
Confidence 543
No 37
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.92 E-value=4.8e-24 Score=184.67 Aligned_cols=194 Identities=19% Similarity=0.228 Sum_probs=142.6
Q ss_pred EEEEeccCCCC--ChHHHHHHHHHHhhcCCCCeEEEEEeCCC-CcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650 203 TVLLPTYNEKE--NLPIIVYLITKYMDEGNYPYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 203 sivip~~n~~~--~l~~~l~~l~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
||+||+||+++ .++++|+++.+ |.+++.||||||||| +|.|.++++++..+++ +.++..++|.|.+.|+|.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~---q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~~a~N~ 74 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILK---QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLGKALNE 74 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHh---cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHHHHHHH
Confidence 69999999874 78888888765 666678999999998 6778888988877654 555667789999999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL 358 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (435)
|+..++|||++++|+|+.++|++++.++..+.+ ++.+++.|.............. +... ............ ....
T Consensus 75 g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~ 150 (201)
T cd04195 75 GLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGK-RRLP-TSHDDILKFARR--RSPF 150 (201)
T ss_pred HHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecc-ccCC-CCHHHHHHHhcc--CCCC
Confidence 999999999999999999999999999999864 4677777765443221110000 0000 001111111111 1123
Q ss_pred ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEe
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFV 407 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~ 407 (435)
.+++++++|+++++++++... .+.+|+++++|+..+|+++.++|....
T Consensus 151 ~~~~~~~rr~~~~~~g~~~~~-~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 151 NHPTVMFRKSKVLAVGGYQDL-PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred CChHHhhhHHHHHHcCCcCCC-CCchHHHHHHHHHHcCCceecccHHHh
Confidence 455679999999999876544 778999999999999999999986543
No 38
>KOG2977|consensus
Probab=99.91 E-value=2.1e-23 Score=175.93 Aligned_cols=229 Identities=24% Similarity=0.380 Sum_probs=185.2
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhc-----CCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDE-----GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL 273 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~ 273 (435)
...+|||||.|||+..+...++...+++++ +...+||+||||||+|.|.+++-++..++..-.++++...+|.|+
T Consensus 66 ~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgK 145 (323)
T KOG2977|consen 66 KMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGK 145 (323)
T ss_pred hceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCC
Confidence 347999999999999998777766555543 235799999999999999999999997777668999999999999
Q ss_pred HHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-----cCCCceEEeeeEECC--CceeccchhHHHHHHHHHHH
Q psy3650 274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-----QENLDVVTGTRYVGT--GGVYGWDFKRKLVSRGANYL 346 (435)
Q Consensus 274 ~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 346 (435)
|.|...|+..+.|++++|.|+|....-..++.+.+.+. ....++++|+|..-+ ......++.+.+.-..+..+
T Consensus 146 GgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~l 225 (323)
T KOG2977|consen 146 GGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKL 225 (323)
T ss_pred CcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHH
Confidence 99999999999999999999999755555666666654 234568888875433 33444566777777777777
Q ss_pred HHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650 347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA 425 (435)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~ 425 (435)
.-.....++.|++|||.+|+|.+.+++.......++.+|.|+...+...+..+.++|+.|.+ ...||++ .+..+...
T Consensus 226 v~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v~w~E--IdgSKi~~~~s~~~m~ 303 (323)
T KOG2977|consen 226 VWIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPVEWTE--IDGSKITPVWSWLQMG 303 (323)
T ss_pred HHHHhcCcccccchhHHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeeeEEEE--cCCceeehHHHHHHHh
Confidence 77788899999999999999999999987778899999999999999999999999999976 4567777 45555555
Q ss_pred HHHH
Q psy3650 426 KALL 429 (435)
Q Consensus 426 ~~~~ 429 (435)
.+++
T Consensus 304 ~dlv 307 (323)
T KOG2977|consen 304 SDLV 307 (323)
T ss_pred hhhh
Confidence 5443
No 39
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.91 E-value=2.2e-23 Score=210.73 Aligned_cols=230 Identities=14% Similarity=0.192 Sum_probs=160.3
Q ss_pred CCCcceEEEEeccCCCCCh-HHHHHHHHHHhhcCCC--CeEEEEEeCCCCcch--------------HHHHHHHHHHhCC
Q psy3650 197 SVKNKYTVLLPTYNEKENL-PIIVYLITKYMDEGNY--PYEIIVIDDGSPDGT--------------LDAAKQLQSIYGS 259 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l-~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t--------------~~~~~~~~~~~~~ 259 (435)
...|+++|+||+|||+..+ ++++.++.. +.++ ++||+|+||||+|+| .+.++++.++.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~---~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~-- 202 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN---MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL-- 202 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHh---CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--
Confidence 4568999999999998755 567776543 5555 699999999999987 34566666654
Q ss_pred ceEEEecCCCCC-CHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccc--hh
Q psy3650 260 EKIVLKPRKKKL-GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWD--FK 335 (435)
Q Consensus 260 ~~i~~~~~~~n~-g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~--~~ 335 (435)
.+.++..++|. +|+.|+|.|++.++|||++++|+|..++|++|.+++..+. +++.++|.++....+....... ..
T Consensus 203 -~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~ 281 (713)
T TIGR03030 203 -GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTF 281 (713)
T ss_pred -CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHH
Confidence 34445455554 5899999999999999999999999999999999999985 5677777776554432211111 01
Q ss_pred HHHHH---HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650 336 RKLVS---RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 336 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~ 412 (435)
....+ .+...........+.....|++.++||++++++|+... ....||+++++|++++|+++.++|....+....
T Consensus 282 ~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~-~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p 360 (713)
T TIGR03030 282 RRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG-ETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP 360 (713)
T ss_pred HHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC-CCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 11111 11111111111112234567788999999999987653 456899999999999999999999777665433
Q ss_pred cccCC-HHHHHHHHHHHHHHhh
Q psy3650 413 ESKLG-GTEIFQFAKALLYLFA 433 (435)
Q Consensus 413 ~s~~~-~~~~~~~~~~~~~~f~ 433 (435)
.+-.. .++..|+....++.|.
T Consensus 361 ~sl~~~~~Qr~RWa~G~~qi~~ 382 (713)
T TIGR03030 361 ETLSGHIGQRIRWAQGMMQIFR 382 (713)
T ss_pred CCHHHHHHHHHHHhcChHHHHh
Confidence 33333 5677888877777654
No 40
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=1.4e-23 Score=181.78 Aligned_cols=172 Identities=22% Similarity=0.234 Sum_probs=142.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
||||+||++..++++++++.+ |+++..||||+||||+|+|.++++++....+ +.++..++|.|.+.++|.|++.
T Consensus 1 viI~~~n~~~~l~~~l~sl~~---q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n~~~~~ 74 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLA---QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFYEGVRR 74 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHh---ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHHHHHHH
Confidence 689999999999999999865 5666789999999999999999998866543 6667678899999999999997
Q ss_pred c---cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccc
Q psy3650 284 A---TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTG 360 (435)
Q Consensus 284 a---~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
+ ++||++++|+|+.++++++.++++.+.+++.+++.+.+...++ .+
T Consensus 75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~ 123 (202)
T cd04185 75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SF 123 (202)
T ss_pred HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ce
Confidence 6 6899999999999999999999999987778877776655432 23
Q ss_pred ceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650 361 SFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGE 413 (435)
Q Consensus 361 ~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~ 413 (435)
++++++|++++++++.... ..+++|.+++.|+.++|+++ ++|-....|..+.
T Consensus 124 ~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~ 176 (202)
T cd04185 124 VGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAI 176 (202)
T ss_pred EEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccc
Confidence 4479999999999764433 45679999999999999999 9887776665554
No 41
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=6.3e-24 Score=185.80 Aligned_cols=205 Identities=20% Similarity=0.215 Sum_probs=148.3
Q ss_pred EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
|||||+||+...++++|+++.+ |.++++|||||||||+|+|.++++++..++| ..+.++..++|.|.+.++|.|+.
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~---q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~n~g~~ 76 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILA---QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNFESLLQ 76 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHHHHHHH
Confidence 6899999999999999988865 5666899999999999999999999988876 35666778889999999999999
Q ss_pred hccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCc--eeccchhHHHHHHHHHHHHHHhcCCCccccc
Q psy3650 283 YATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGG--VYGWDFKRKLVSRGANYLTQLLLRPGVSDLT 359 (435)
Q Consensus 283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
.+++|||+++|+|+.+.|++|..+++.+ ..+..+++.+........ ........................ ....
T Consensus 77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 153 (214)
T cd04196 77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQ---NVVT 153 (214)
T ss_pred hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHh---CccC
Confidence 9999999999999999999999999984 455566666655432221 111111111100000011111111 1235
Q ss_pred cceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEE-eeccccccc
Q psy3650 360 GSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF-VDRVYGESK 415 (435)
Q Consensus 360 ~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~-~~~~~~~s~ 415 (435)
|++++++|++++++++......+.+|.++..++.. |.++.++|... .++.++.|.
T Consensus 154 ~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~ 209 (214)
T cd04196 154 GCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLILYRQHGNNV 209 (214)
T ss_pred CceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHHHHhcccccc
Confidence 66789999999999765555467789888888777 66888888654 445555544
No 42
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=192.70 Aligned_cols=211 Identities=23% Similarity=0.317 Sum_probs=161.0
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
++++++||++||..+.+.+++.++.+ +.++..++++|||+|+|.+.+.+++.. .| .+.++.+++|.|.+.+.|
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~---~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~agg~n 74 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAA---QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGFAGGFN 74 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhc---CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccchhhhh
Confidence 68899999999999999888888765 666677778999999999998877632 34 577777899999999999
Q ss_pred HHHhhccCC---EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHH-HHHhc---
Q psy3650 279 HGLKYATGN---FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL-TQLLL--- 351 (435)
Q Consensus 279 ~g~~~a~~d---~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 351 (435)
.|++.|.++ |++++|+|..+++++|++|++.+++.+...+.|......+................... .....
T Consensus 75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (305)
T COG1216 75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIA 154 (305)
T ss_pred HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccccc
Confidence 999999654 99999999999999999999999988888888888776543211111110000000000 00000
Q ss_pred -----CCCcc-ccccceeeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC
Q psy3650 352 -----RPGVS-DLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL 416 (435)
Q Consensus 352 -----~~~~~-~~~~~~~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~ 416 (435)
..... ..+|+|+++++++|+++|+..+ .+.|.+|+|+|+|+.++|+++.++|...+.|..|.|..
T Consensus 155 ~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~~ 226 (305)
T COG1216 155 PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKG 226 (305)
T ss_pred ccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCCC
Confidence 00111 3789999999999999987544 46777999999999999999999999998888887764
No 43
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.91 E-value=8.7e-23 Score=183.01 Aligned_cols=202 Identities=14% Similarity=0.168 Sum_probs=138.9
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..|.||||||+||+++.+.++++++.+ |+++++|||||||||++ .+.++++.......++.++.++.|.|.+.|+
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~---Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~ 77 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLR---QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVR 77 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 368899999999999999888887754 77889999999999984 4556666655444478888888999999999
Q ss_pred HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchh-HHHHHHHHHHHHHHhcCCCc
Q psy3650 278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFK-RKLVSRGANYLTQLLLRPGV 355 (435)
Q Consensus 278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 355 (435)
|.|++.|+|+||+++|+|+...|+.|..++..+.+ ...+++.+......+.....+.. ....... +.....+...
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~n- 154 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSP--YSRRLFYKRN- 154 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcccccccccCCCCCCC--CCHHHHHHhc-
Confidence 99999999999999999999999999999998865 45566666543222211111000 0000000 0000111111
Q ss_pred cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE-Eeecc
Q psy3650 356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS-FVDRV 410 (435)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~-~~~~~ 410 (435)
..|...++.+..+...+ +.+.....+|+||++|+...|.+...+|.. ..+|.
T Consensus 155 --~ig~~~~~~~~~~~~~~-fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~ 207 (279)
T PRK10018 155 --IIGNQVFTWAWRFKECL-FDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHI 207 (279)
T ss_pred --CcCceeeehhhhhhhcc-cCCCCCccccHHHHHHHHHhcCceEeeccceEEEEc
Confidence 12233355555555443 445566789999999999999888888764 34444
No 44
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=2.1e-22 Score=177.05 Aligned_cols=193 Identities=22% Similarity=0.273 Sum_probs=137.1
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL 281 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~ 281 (435)
+||+||+||+++.+.++|+++.. |.+.++||+||||+|+|++.+.+++ + .+.++.. +.|++.++|.|+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~~--~~g~~~a~n~g~ 68 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVISS--PKGRARQMNAGA 68 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEeC--CcCHHHHHHHHH
Confidence 68999999999999999998865 5557899999999999999888766 2 3445433 678999999999
Q ss_pred hhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650 282 KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS 361 (435)
Q Consensus 282 ~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
+.+++++++++|+|+.++++++++++..+..++..++.......+... ..+.. .. .......... ....++
T Consensus 69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~~---~~~~~~ 139 (221)
T cd02522 69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGP----RLRLL-EL-GANLRSRLFG---LPYGDQ 139 (221)
T ss_pred HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCcc----chhhh-hh-cccceecccC---CCcCCc
Confidence 999999999999999999999999988776555444333333333221 11110 00 0000000111 112345
Q ss_pred eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC
Q psy3650 362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG 417 (435)
Q Consensus 362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~ 417 (435)
+++++|++++++|++.+.. +.+|+|+++|+.++|+++.. |...+.......+.+
T Consensus 140 ~~~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G~~~~~-~~~~~~~~~~~~~~~ 193 (221)
T cd02522 140 GLFIRRELFEELGGFPELP-LMEDVELVRRLRRRGRPALL-PSPVTTSARRWERNG 193 (221)
T ss_pred eEEEEHHHHHHhCCCCccc-cccHHHHHHHHHhCCCEEEc-CceeeecccccccCC
Confidence 6899999999998876666 88999999999999999877 655544433333333
No 45
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.90 E-value=5e-22 Score=190.17 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=162.3
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..|+++|+||+|||++.+.++++++... +.|+++||+|++|+|+|+|.+.++++.+++|++++++.+.+...||+.|+
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~--ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aL 141 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLAT--LDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCL 141 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHc--CCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHH
Confidence 3789999999999999999999886443 34688999999999999999999999999998776666665566799999
Q ss_pred HHHHhhc------cC---CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhH-HHHHHHHHH--
Q psy3650 278 MHGLKYA------TG---NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-KLVSRGANY-- 345 (435)
Q Consensus 278 n~g~~~a------~~---d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 345 (435)
|.|++.+ +| |+++++|+|+.++|+.+..+...+. +.+++..+....+.... .+.. .....+...
T Consensus 142 N~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~--~~~~VQ~pv~~~~~~~~--~~~ag~y~~ef~~~~~ 217 (504)
T PRK14716 142 NWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP--RHDFVQLPVFSLPRDWG--EWVAGTYMDEFAESHL 217 (504)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC--CCCEEecceeccCCchh--HHHHHHHHHHHHHHHH
Confidence 9999764 45 9999999999999999998766653 45666654433221100 1111 111111111
Q ss_pred ---HHHHhcCCCccccccceeeecHHHHHHh----hhc-ccCcccchhhHHHHHHHHCCCcEEEeeeEEee--------c
Q psy3650 346 ---LTQLLLRPGVSDLTGSFRLYKKQVLENL----VSS-CVSKGYVFQMEMVIRARQYNYTIGEVPISFVD--------R 409 (435)
Q Consensus 346 ---~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~-~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~--------~ 409 (435)
..+..++.. ....|.+++|+|++++++ ++. ...+...||+|+.+|+..+|+++.++|.+..+ +
T Consensus 218 ~~l~~r~~LG~~-~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~ 296 (504)
T PRK14716 218 KDLPVREALGGL-IPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRG 296 (504)
T ss_pred HHHHHHHhcCCc-cccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccc
Confidence 111222222 234577789999999998 232 34567889999999999999999999987432 1
Q ss_pred --------ccccccCCHHHHHHHHHHH-HHHh
Q psy3650 410 --------VYGESKLGGTEIFQFAKAL-LYLF 432 (435)
Q Consensus 410 --------~~~~s~~~~~~~~~~~~~~-~~~f 432 (435)
.+.+-+-.+++..|+...+ ++.+
T Consensus 297 ~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~ 328 (504)
T PRK14716 297 EPIATREFFPDTFKAAVRQKARWIYGIAFQGW 328 (504)
T ss_pred ccccccccCccCHHHHHHHHHHHHhchHHhhH
Confidence 1122233478899999886 5544
No 46
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=1.1e-22 Score=197.88 Aligned_cols=228 Identities=23% Similarity=0.309 Sum_probs=171.9
Q ss_pred CcceEEEEeccCCCC-ChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC-CceEEEecCCCCCCHHHH
Q psy3650 199 KNKYTVLLPTYNEKE-NLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTA 276 (435)
Q Consensus 199 ~~~isivip~~n~~~-~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~~~~~~~n~g~~~a 276 (435)
.|+++|+||+|||+. .+++++.++.+ +.++.+||++|||+|+|++.+++++...+++ .+++... ..++.||+.|
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~---~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~a 128 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS---QDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGA 128 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh---CCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHH
Confidence 589999999999999 88998888755 7888899999999999999999999998873 4444421 2568899999
Q ss_pred HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH---HHHH-HHHHHH-Hhc
Q psy3650 277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL---VSRG-ANYLTQ-LLL 351 (435)
Q Consensus 277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~ 351 (435)
+|.|+..+++|+|+++|+|..++|++|.+++..+.+++..++++.....+.... ..+.... .... ...... ...
T Consensus 129 l~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (439)
T COG1215 129 LNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDP-SNLLGRIQAIEYLSAFYFRLRAASK 207 (439)
T ss_pred HHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCCh-hhhcchhcchhhhhhHHHhhhhhhh
Confidence 999999999999999999999999999999999987776656665544432100 0111111 1111 111111 111
Q ss_pred CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650 352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY 430 (435)
Q Consensus 352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~ 430 (435)
......++|++.+++|++++++|+ ......+||.+++.++..+|+++.++|-.......-.+-.. +++..|++.+.++
T Consensus 208 ~g~~~~~~G~~~~~rr~aL~~~g~-~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~~~ 286 (439)
T COG1215 208 GGLISFLSGSSSAFRRSALEEVGG-WLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARGGLQ 286 (439)
T ss_pred cCCeEEEcceeeeEEHHHHHHhCC-CCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcccce
Confidence 123556789999999999999974 45667789999999999999999999988666554444443 6778888887766
Q ss_pred Hh
Q psy3650 431 LF 432 (435)
Q Consensus 431 ~f 432 (435)
.+
T Consensus 287 ~~ 288 (439)
T COG1215 287 VL 288 (439)
T ss_pred ee
Confidence 54
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.90 E-value=2.8e-22 Score=170.67 Aligned_cols=177 Identities=20% Similarity=0.302 Sum_probs=136.4
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
||||+||+.+.++++|+++.+ |.+.++||||+||+|+|+|.++++++....+...+.+...+.+.|++.++|.|++.
T Consensus 1 ivip~~n~~~~l~~~l~sl~~---q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~ 77 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN---QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA 77 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh---ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH
Confidence 689999999999999998876 55678999999999999999999988765443233444455566889999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
|+++|++++|+|+.+++++|..+++.+ + +...+.|.+......... ....|+++
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~-~-~~~~v~g~~~~~~~~~~~------------------------~~~~~~~~ 131 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA-E-PGVFLSGSRVLLNEKLTE------------------------RGIRGCNM 131 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh-C-CCcEEecceeecccccce------------------------eEeccceE
Confidence 999999999999999999999999988 3 345566666554332110 33456667
Q ss_pred eecHHHHHHhhhcccCc-cc-chhhHHHHHHHHCCCcEEEee-eEEeec
Q psy3650 364 LYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQYNYTIGEVP-ISFVDR 409 (435)
Q Consensus 364 ~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~G~~i~~~p-~~~~~~ 409 (435)
+++|+.+.+++++.+.. .+ .+|+|+++|+.++|++...+. -...+|
T Consensus 132 ~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 132 SFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred EEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 88999999997765443 22 589999999999997766654 444444
No 48
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.90 E-value=2.7e-23 Score=184.82 Aligned_cols=203 Identities=20% Similarity=0.185 Sum_probs=139.4
Q ss_pred EEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 204 VLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 204 ivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
+|||+||+. +.+.++|+++.+ | ..|||||||+|+|.+....+. . ...+.++..++|.|++.|+|.|++
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~---q---~~~iivvDn~s~~~~~~~~~~---~--~~~i~~i~~~~n~G~~~a~N~g~~ 69 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAE---Q---VDKVVVVDNSSGNDIELRLRL---N--SEKIELIHLGENLGIAKALNIGIK 69 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhc---c---CCEEEEEeCCCCccHHHHhhc---c--CCcEEEEECCCceehHHhhhHHHH
Confidence 589999999 999999998865 3 569999999998877655433 2 225667777889999999999999
Q ss_pred hccC---CEEEEEeCCCCCCCccHHHHH---HHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650 283 YATG---NFIIIMDADLSHHPKFIPEMI---KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS 356 (435)
Q Consensus 283 ~a~~---d~v~~~d~D~~~~~~~l~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
.|++ ||++++|+|+.++|++|.+++ ..+...+...+.++...................................
T Consensus 70 ~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (237)
T cd02526 70 AALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVD 149 (237)
T ss_pred HHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEee
Confidence 9987 999999999999999999995 4444444444555554432221111000000000000000000001112
Q ss_pred ccccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC
Q psy3650 357 DLTGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG 417 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~ 417 (435)
...+++++++|+++++++++.+.. ..++|+|+++|+.++|+++.++|...++|..+.++..
T Consensus 150 ~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~~~~ 211 (237)
T cd02526 150 FLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDKRVK 211 (237)
T ss_pred eeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCcchh
Confidence 234556799999999998765443 2357999999999999999999999988887877543
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=4.1e-22 Score=166.89 Aligned_cols=164 Identities=22% Similarity=0.420 Sum_probs=136.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
|+||+||+...+.++++++.+ |..+.+||+|+||||++++.+.+++... ++.++..++|.|++.|+|.|++.
T Consensus 1 vii~~~~~~~~l~~~l~sl~~---~~~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~ 72 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLA---QTYPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNNQGIRE 72 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHh---ccCCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhhHHHhh
Confidence 689999999999999999876 4446889999999999999888876522 46666677899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
+.+++++++|+|+.++++++..+++.+.+.+...+++.+ ..|+++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~ 117 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------------VSGAFL 117 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------CceeeE
Confidence 999999999999999999999999977654433333433 678889
Q ss_pred eecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650 364 LYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRV 410 (435)
Q Consensus 364 ~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~ 410 (435)
+++++++++++++... ..+.+|.++.+|+..+|+++.++|...+.|.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 118 LVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred eeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 9999999999765443 2367899999999999999999998876654
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.89 E-value=2.9e-21 Score=170.92 Aligned_cols=225 Identities=10% Similarity=0.077 Sum_probs=154.5
Q ss_pred eEEEEeccCCCCC-hHHHHHHHHHHhh-cCC-CCeEEEEEeCCCCcchHH----HHHHHHHHhC-CceEEEecCCCCCC-
Q psy3650 202 YTVLLPTYNEKEN-LPIIVYLITKYMD-EGN-YPYEIIVIDDGSPDGTLD----AAKQLQSIYG-SEKIVLKPRKKKLG- 272 (435)
Q Consensus 202 isivip~~n~~~~-l~~~l~~l~~~~~-~~~-~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~i~~~~~~~n~g- 272 (435)
+||+||+||++.. +..+|.++.+.+. +.+ +.+||+++||++++.... .+.+++++++ ..++++...++|.|
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~ 80 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence 6999999999986 7777777665443 333 689999999998765432 2333554443 44677777777877
Q ss_pred HHHHHHHHHhh--ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHH---HH-H
Q psy3650 273 LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---AN-Y 345 (435)
Q Consensus 273 ~~~a~n~g~~~--a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~-~ 345 (435)
|+.++|.++.. +++|||+++|+|..++|++|.+++.++. +++.++|+++....+.. +++.++.... +. .
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~----~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE----TLFARLQQFANRLYGPV 156 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC----CHHHHHHHHHHHHHHHH
Confidence 67888888876 6789999999999999999999999996 78889998877665543 2333332211 11 1
Q ss_pred HHH--HhcCCCccccccceeeecHHHHHHhhhcc-------c-CcccchhhHHHHHHHHCCCcEEEeeeEEe-ecccccc
Q psy3650 346 LTQ--LLLRPGVSDLTGSFRLYKKQVLENLVSSC-------V-SKGYVFQMEMVIRARQYNYTIGEVPISFV-DRVYGES 414 (435)
Q Consensus 346 ~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-------~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~-~~~~~~s 414 (435)
+.. ...........|..+++||++|+++++.. + .....+|+++.+++..+|+++.+.|.... ......+
T Consensus 157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~ 236 (254)
T cd04191 157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT 236 (254)
T ss_pred HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence 111 11112234556888999999999964322 2 34567999999999999999999997653 3222222
Q ss_pred -cCCHHHHHHHHHHHHH
Q psy3650 415 -KLGGTEIFQFAKALLY 430 (435)
Q Consensus 415 -~~~~~~~~~~~~~~~~ 430 (435)
+--+++..||....++
T Consensus 237 ~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 237 LIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 2236777888776543
No 51
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.88 E-value=1.7e-22 Score=169.38 Aligned_cols=167 Identities=27% Similarity=0.362 Sum_probs=127.2
Q ss_pred EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
|||||+||+.+.+.++|+++.++ ...+.|||||||||+|++.++++++.+ ....+.++..++|.|.+.++|.|++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q---~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~ 75 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ---TDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIK 75 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH---SGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc---cCCCEEEEEeccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 79999999999999999999875 567899999999999999999999876 2346778888889999999999999
Q ss_pred hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccch-hH-HHHHHHHHHHHHHhcCCCcccccc
Q psy3650 283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF-KR-KLVSRGANYLTQLLLRPGVSDLTG 360 (435)
Q Consensus 283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 360 (435)
.|+++|++++|+|+.+++++|..+++.+.+++.+++.+.............. .. .......................+
T Consensus 76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (169)
T PF00535_consen 76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIG 155 (169)
T ss_dssp H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESS
T ss_pred ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccc
Confidence 9999999999999999999999999999988888888877665433211111 10 011112222333344455667788
Q ss_pred ceeeecHHHHHHhh
Q psy3650 361 SFRLYKKQVLENLV 374 (435)
Q Consensus 361 ~~~~~~r~~~~~~~ 374 (435)
+|++++|++|+++|
T Consensus 156 ~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 156 SCALFRRSVFEEIG 169 (169)
T ss_dssp SCEEEEEHHHHHCH
T ss_pred cEEEEEHHHHHhhC
Confidence 89999999999985
No 52
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.87 E-value=5.5e-22 Score=176.43 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=140.2
Q ss_pred EEEeccCCC-CChHHHHHHHHHHhhcCCC----------CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC
Q psy3650 204 VLLPTYNEK-ENLPIIVYLITKYMDEGNY----------PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG 272 (435)
Q Consensus 204 ivip~~n~~-~~l~~~l~~l~~~~~~~~~----------~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g 272 (435)
|+||+|||+ ..|+++|+++.+ |.++ ++|||||||||+| .|.|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~---q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~g 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILK---NDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRG 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHH---hhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCc
Confidence 689999997 789999999865 5555 7999999999999 2445
Q ss_pred HHH-------HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHH
Q psy3650 273 LGT-------AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN 344 (435)
Q Consensus 273 ~~~-------a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (435)
|.. ++|.++..+++||++++|+|+.++|++|.+++..+. ++++++|+|.....+.........+.+-.....
T Consensus 54 k~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~ 133 (244)
T cd04190 54 KRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISH 133 (244)
T ss_pred chHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhh
Confidence 553 567788888999999999999999999999999984 666777888765554321000111111000001
Q ss_pred H---HHHHhcCCCccccccceeeecHHHHHHhhhcccC-------------------cccchhhHHHHHHHHCCCcEEE-
Q psy3650 345 Y---LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-------------------KGYVFQMEMVIRARQYNYTIGE- 401 (435)
Q Consensus 345 ~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------------------~~~~~D~el~lr~~~~G~~i~~- 401 (435)
. .....++ ....++|.+.+||+++++++++.... ....||.+|++++..+|+++.+
T Consensus 134 ~~~~~~~s~~g-~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~ 212 (244)
T cd04190 134 WLDKAFESVFG-FVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYL 212 (244)
T ss_pred hhcccHHHcCC-ceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEE
Confidence 1 1111122 23456888999999999998543221 2256999999999999999999
Q ss_pred -eeeEEeecccccccC-CHHHHHHHHHHHH
Q psy3650 402 -VPISFVDRVYGESKL-GGTEIFQFAKALL 429 (435)
Q Consensus 402 -~p~~~~~~~~~~s~~-~~~~~~~~~~~~~ 429 (435)
+|-...+.....|-. -+++..||+.+.+
T Consensus 213 ~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~ 242 (244)
T cd04190 213 YVPGAVAETDVPETFVELLSQRRRWINSTI 242 (244)
T ss_pred EecccEEEEECCCCHHHHHHHhHhhhcccc
Confidence 898777665555533 3688888887654
No 53
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.87 E-value=5.6e-21 Score=175.95 Aligned_cols=173 Identities=26% Similarity=0.354 Sum_probs=138.0
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
+...++|||||||||+|+|.+++++++++. ..+++.+..+.|.|+++|+|.|+++|+|||++++|+|++++|++++.++
T Consensus 34 ~~~~~~EIIvVDDgS~D~T~~il~~~~~~~-~~~v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~ 112 (325)
T PRK10714 34 SLGKEYEILLIDDGSSDNSAEMLVEAAQAP-DSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLV 112 (325)
T ss_pred hCCCCEEEEEEeCCCCCcHHHHHHHHHhhc-CCcEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Confidence 445579999999999999999999987543 2345555567899999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME 162 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 162 (435)
+.++ +++|+|.|.+.... .++.+++.++.++.+.....+..+.|..++++++++++++.+...... .. .
T Consensus 113 ~~~~-~~~DvV~~~r~~~~-----~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~l~~~~~~--~~---~ 181 (325)
T PRK10714 113 AKAD-EGYDVVGTVRQNRQ-----DSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHER--ST---F 181 (325)
T ss_pred HHHH-hhCCEEEEEEcCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHHHHHCCCC--cc---H
Confidence 9995 56898877764322 256778888888877778888899999999999999999988322211 11 1
Q ss_pred HHHHHHhhcceeEeeeeEeeecccc
Q psy3650 163 MVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 163 l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
+...+...|.++.++|+.+..|..+
T Consensus 182 ~~~l~~~~g~~i~evpv~~~~R~~G 206 (325)
T PRK10714 182 IPILANTFARRAIEIPVHHAEREFG 206 (325)
T ss_pred HHHHHHHcCCCEEEEEeEecCccCC
Confidence 2234556799999999998877644
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.86 E-value=3.5e-21 Score=175.49 Aligned_cols=196 Identities=20% Similarity=0.159 Sum_probs=133.0
Q ss_pred eccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-
Q psy3650 207 PTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA- 284 (435)
Q Consensus 207 p~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a- 284 (435)
++||++ +.++++++++.+ | ..+||||||+|+++ +.++++....+ ++.++..++|.|.+.|+|.|++.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~---q---~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi~~a~ 70 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPK---Q---VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGLDASF 70 (281)
T ss_pred CccCccHHHHHHHHHHHHh---c---CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHHHHHH
Confidence 479974 778888888765 3 35999999999765 22333333344 577777888999999999999998
Q ss_pred --cCCEEEEEeCCCCCCCccHHHHHHHHhcCC-CceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccc-
Q psy3650 285 --TGNFIIIMDADLSHHPKFIPEMIKLQQQEN-LDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSD- 357 (435)
Q Consensus 285 --~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 357 (435)
.+|||+++|+|+.+++++++++++.+++++ ...++|++..........+..... ............ .....
T Consensus 71 ~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 148 (281)
T TIGR01556 71 RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD--GLLLRQISLDGLTTPQKTSFL 148 (281)
T ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec--ccceeeecccccCCceeccEE
Confidence 679999999999999999999999987654 455666665443321111111100 000000000000 11111
Q ss_pred cccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeeccccccc
Q psy3650 358 LTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415 (435)
Q Consensus 358 ~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~ 415 (435)
.++| ++++|++++++|++.+. ..+.+|+|+|+|+.++|+++.++|.+..+|..|.++
T Consensus 149 ~~sg-~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~~ 206 (281)
T TIGR01556 149 ISSG-CLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDSK 206 (281)
T ss_pred EcCc-ceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCcc
Confidence 2334 58999999999865443 345689999999999999999999888777666543
No 55
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.86 E-value=1.2e-20 Score=160.49 Aligned_cols=170 Identities=19% Similarity=0.212 Sum_probs=122.3
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL 281 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~ 281 (435)
||||+|||++.+.++|+++.+ |.+ ..+|||||||||+|+|.++++++.. .+.....+.|.|++.|+|.|+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~---~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKA---QDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALDFGF 72 (183)
T ss_pred CEEeccchHHHHHHHHHHHHh---cCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHHHHH
Confidence 689999999999999998865 333 4689999999999999998876522 454545567889999999999
Q ss_pred hhcc-----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH---HHHHHHHHH---HHh
Q psy3650 282 KYAT-----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL---VSRGANYLT---QLL 350 (435)
Q Consensus 282 ~~a~-----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~ 350 (435)
..+. +|+++++|+|..++|++|..++..+.+ +.++|.|.+...+... ++.... .......+. ...
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 148 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARVVQAYYNSKNPDD---SWITRLYAFAFLVFNRLRPLGRSN 148 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCeeEEEEeeeCCcc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9874 899999999999999999999999965 5678888776543221 122221 111122221 112
Q ss_pred cCCCccccccceeeecHHHHHHhhhcccCcccchhhHH
Q psy3650 351 LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEM 388 (435)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el 388 (435)
++... ...|++++|||+++++ +++ ......||+||
T Consensus 149 ~~~~~-~~~G~~~~~rr~~l~~-~g~-~~~~l~ED~~~ 183 (183)
T cd06438 149 LGLSC-QLGGTGMCFPWAVLRQ-APW-AAHSLTEDLEF 183 (183)
T ss_pred cCCCe-eecCchhhhHHHHHHh-CCC-CCCCcccccCC
Confidence 23222 3456678999999999 443 34666788775
No 56
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.85 E-value=9.4e-20 Score=181.75 Aligned_cols=224 Identities=13% Similarity=0.051 Sum_probs=162.1
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..|++||+||+|||+..+.++++++.+ .+.|+++||+++++++++.|.+.+++++.++|++++++...+.|.||+.|+
T Consensus 61 ~~~~vsIlVPa~nE~~vi~~~i~~ll~--~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aL 138 (727)
T PRK11234 61 DEKPLAIMVPAWNETGVIGNMAELAAT--TLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCL 138 (727)
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHH--hCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHH
Confidence 468999999999999999999988754 356888999999998888999999999999998777666666688999999
Q ss_pred HHHHhhc-------c--CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH-----HH
Q psy3650 278 MHGLKYA-------T--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR-----GA 343 (435)
Q Consensus 278 n~g~~~a-------~--~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~ 343 (435)
|.|+..+ . .++++++|+|+.++|+.|. ++.++.++. ++|+++....+.. +..+..+ +.
T Consensus 139 N~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~------~~~~~~~~~~~EFa 210 (727)
T PRK11234 139 NNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-DLIQIPVYPFERE------WTHFTSGTYIDEFA 210 (727)
T ss_pred HHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-CeEeecccCCCcc------HHHHHHHHHHHHHH
Confidence 9999987 3 3678889999999999998 667776544 8888875532211 2222211 11
Q ss_pred ----H-HHHHHhcCCCccccccceeee-cH--HHHHHhhh--cccCcccchhhHHHHHHHHCCCcEEEeeeEEee-----
Q psy3650 344 ----N-YLTQLLLRPGVSDLTGSFRLY-KK--QVLENLVS--SCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD----- 408 (435)
Q Consensus 344 ----~-~~~~~~~~~~~~~~~~~~~~~-~r--~~~~~~~~--~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~----- 408 (435)
. ......++... ...|..++| +| +++.++++ ....+..+||+++.+|++.+|+++.+.|.....
T Consensus 211 ~~~~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~ 289 (727)
T PRK11234 211 ELHGKDVPVREALAGQV-PSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKER 289 (727)
T ss_pred HHhhhhhHHHHHcCCCc-ccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccc
Confidence 1 12223333333 456667899 55 35777753 245577789999999999999999999954431
Q ss_pred -------------------cccccccCCHHHHHHHHHHH-HHHh
Q psy3650 409 -------------------RVYGESKLGGTEIFQFAKAL-LYLF 432 (435)
Q Consensus 409 -------------------~~~~~s~~~~~~~~~~~~~~-~~~f 432 (435)
..+.+-+-..++..||..++ |+.|
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~ 333 (727)
T PRK11234 290 EQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGF 333 (727)
T ss_pred cccccccccccccceEEEEeCchhHHHHHHHHHHHHcccHHHHH
Confidence 11111222368888888884 5554
No 57
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.85 E-value=5.2e-20 Score=166.80 Aligned_cols=206 Identities=19% Similarity=0.280 Sum_probs=139.1
Q ss_pred EEEEeccCCCCC------hHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEec-CCCCCCHHH
Q psy3650 203 TVLLPTYNEKEN------LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP-RKKKLGLGT 275 (435)
Q Consensus 203 sivip~~n~~~~------l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~-~~~n~g~~~ 275 (435)
|||||++++... +..+|.++... +...++||||||+||++.+.+.++++.+.......+... .....|.+.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~--~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ 78 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQF--QSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK 78 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH
Confidence 799999999854 33334444331 346789999999999999888888887765432122221 223579999
Q ss_pred HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHH---HHhcCCCceEEeee-EECCCceeccchhHHHHHHHHHH-HHHHh
Q psy3650 276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK---LQQQENLDVVTGTR-YVGTGGVYGWDFKRKLVSRGANY-LTQLL 350 (435)
Q Consensus 276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~---~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 350 (435)
|+|.|+..|++|+|+|+|+|+.++|+.+.+++. .+..+...+++.+. ........ ............. .....
T Consensus 79 arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~--~~~~~~~~~~~~~~~~~~~ 156 (281)
T PF10111_consen 79 ARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSE--KFYSQFKNLWDHEFLESFI 156 (281)
T ss_pred HHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhH--HHhhcchhcchHHHHHHHh
Confidence 999999999999999999999999999999999 66554444444433 33322210 1111110000011 11111
Q ss_pred c----CCCccccccceeeecHHHHHHhhhcccCc-cc-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650 351 L----RPGVSDLTGSFRLYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 351 ~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~ 412 (435)
. ........|+|++++|+.|.++||+++.. ++ .||.|++.|+.+.|+++...|....++...
T Consensus 157 ~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~~ 224 (281)
T PF10111_consen 157 SGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSHR 224 (281)
T ss_pred hccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccccC
Confidence 1 11122345688999999999999887765 44 599999999999999999999877765433
No 58
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.85 E-value=7e-20 Score=160.70 Aligned_cols=172 Identities=11% Similarity=0.108 Sum_probs=116.7
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEcc----CCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP----RKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~----~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
++|||||||||+|+|.++++++.++.+..+++++. ...+.|.+.|+|.|++.|+|||++|+|+|+.++|++++.++
T Consensus 27 ~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~ 106 (219)
T cd06913 27 TLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQY 106 (219)
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHH
Confidence 49999999999999999999998876654455442 34567999999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchH-HHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCchhh
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGA-NYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQ 160 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d 160 (435)
..+.+.+..++ |.+...........+. ....... ....................+++|++++++|++... ..+.+|
T Consensus 107 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD 184 (219)
T cd06913 107 EAALQHPNSII-GCQVRRIPEDSTERYT-RWINTLTREQLLTQVYTSHGPTVIMPTWFCSREWFSHVGPFDEGGKGVPED 184 (219)
T ss_pred HHHHhCCCcEE-EEEEEecCcccchhhH-HHHHhcCHHHHHHHHHhhcCCccccccceeehhHHhhcCCccchhccchhH
Confidence 88866554444 5443332221111111 1111111 111111111111111222357899999999776543 456789
Q ss_pred HHHHHHHHhhcceeEeeeeE
Q psy3650 161 MEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~~~~ 180 (435)
++++.|+.+.|.++..++..
T Consensus 185 ~~l~~r~~~~g~~i~~~~~~ 204 (219)
T cd06913 185 LLFFYEHLRKGGGVYRVDRC 204 (219)
T ss_pred HHHHHHHHHcCCceEEEcce
Confidence 99999999999988776654
No 59
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.84 E-value=9.6e-21 Score=161.64 Aligned_cols=159 Identities=40% Similarity=0.657 Sum_probs=130.8
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 85 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 85 (435)
.++|||||||+|+|+|.++++++.++.+.. .++..++|.|+++++|.|++.|+|||++++|+|+.++|++|+.+++.+
T Consensus 27 ~~~eiivvd~~s~d~~~~~~~~~~~~~~~~--~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 104 (185)
T cd04179 27 YDYEIIVVDDGSTDGTAEIARELAARVPRV--RVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKL 104 (185)
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHhCCCe--EEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 479999999999999999999998877654 455678899999999999999999999999999999999999999997
Q ss_pred hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHH
Q psy3650 86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVI 165 (435)
Q Consensus 86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 165 (435)
.+.+.++|+|.+....+. ....+.++............+.........+++.+++|+++++++......+|.+++|+++
T Consensus 105 ~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~ 183 (185)
T cd04179 105 LEGGADVVIGSRFVRGGG-AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLV 183 (185)
T ss_pred hccCCcEEEEEeecCCCc-ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeee
Confidence 778899999998766543 2334455555555555555555667777888999999999999975667788888888887
Q ss_pred HH
Q psy3650 166 RA 167 (435)
Q Consensus 166 r~ 167 (435)
|+
T Consensus 184 ~~ 185 (185)
T cd04179 184 GA 185 (185)
T ss_pred cC
Confidence 63
No 60
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.84 E-value=3.8e-20 Score=159.27 Aligned_cols=147 Identities=16% Similarity=0.192 Sum_probs=118.2
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFIP 79 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~ 79 (435)
|...++|||||||+|+|+|.++++++.+.+|..++.++..+.+.| ++.++|.|++.|+|||++++|+|+.++|++|+
T Consensus 26 q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 105 (196)
T cd02520 26 QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLR 105 (196)
T ss_pred ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence 333449999999999999999999999888866665554554544 45678999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCch
Q psy3650 80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYV 158 (435)
Q Consensus 80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (435)
.+++.+.+++.++|.|. ...++..+++++++++++++... ....
T Consensus 106 ~l~~~~~~~~~~~v~~~-----------------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~~~ 150 (196)
T cd02520 106 RMVAPLMDPGVGLVTCL-----------------------------------CAFGKSMALRREVLDAIGGFEAFADYLA 150 (196)
T ss_pred HHHHHhhCCCCCeEEee-----------------------------------cccCceeeeEHHHHHhccChHHHhHHHH
Confidence 99999876778887775 22345689999999999766532 2346
Q ss_pred hhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650 159 FQMEMVIRARQYNYTIGEVPISFVDR 184 (435)
Q Consensus 159 ~d~~l~~r~~~~g~~~~~~~~~~~~r 184 (435)
+|++++.|+.+.|+++...|....++
T Consensus 151 eD~~l~~rl~~~G~~i~~~~~~~~~~ 176 (196)
T cd02520 151 EDYFLGKLIWRLGYRVVLSPYVVMQP 176 (196)
T ss_pred HHHHHHHHHHHcCCeEEEcchheecc
Confidence 89999999999999998776554443
No 61
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.84 E-value=5.3e-20 Score=169.14 Aligned_cols=179 Identities=17% Similarity=0.148 Sum_probs=122.3
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
+|||||||||+|+|.+++.+.........+.++..+.|.|.+.|+|.|++.|+||||+|||+|+.++|+||+.|++.+.+
T Consensus 31 ~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~ 110 (299)
T cd02510 31 KEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAE 110 (299)
T ss_pred CEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHh
Confidence 69999999999999998876322211235666677889999999999999999999999999999999999999999977
Q ss_pred CCCcEEEEeeeecCCC-cc-------------CcccchhhhhchHHHH--HHHHhCCCccccccceehhhHHHHHHhhcc
Q psy3650 88 ENLDVVTGTRYVGTGG-VY-------------GWDFKRKLVSRGANYL--TQLLLRPGVSDLTGSFRLYKKQVLENLVSS 151 (435)
Q Consensus 88 ~~~~~v~g~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (435)
++..++.+ ....... .. .+.............. .............|++.+++|++++++|++
T Consensus 111 ~~~~~v~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgf 189 (299)
T cd02510 111 NRKTVVCP-IIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGY 189 (299)
T ss_pred CCCeEEEe-eeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCC
Confidence 66555443 2211110 00 0000000000000000 000011223344577889999999999776
Q ss_pred cccc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650 152 CVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 152 ~~~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
.... .+ .+|.|+++|+.++|+++...|.....+...
T Consensus 190 De~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 190 DEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 5433 22 489999999999999999998776666543
No 62
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.83 E-value=1.4e-19 Score=154.93 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=113.9
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC---CCCCCHHHHHHHH
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR---KKKLGLGTAYMHG 280 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~---~~n~g~~~a~n~g 280 (435)
||||+|||++.+.++|+++.+ +. +++|||||||+|+|.|.++++ +....+. +.++.. ..+.|++.|+|.|
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~---~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~~--v~~i~~~~~~~~~Gk~~aln~g 73 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR---NK-PNFLVLVIDDASDDDTAGIVR-LAITDSR--VHLLRRHLPNARTGKGDALNAA 73 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh---CC-CCeEEEEEECCCCcCHHHHHh-heecCCc--EEEEeccCCcCCCCHHHHHHHH
Confidence 689999999999999999876 44 578999999999999999987 4333344 444432 3578999999999
Q ss_pred Hhhcc-----------CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH----HHHH
Q psy3650 281 LKYAT-----------GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR----GANY 345 (435)
Q Consensus 281 ~~~a~-----------~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 345 (435)
++.+. +|+|+++|+|..++|++|..+...+.+++.+++.+.....+... .+...+... ....
T Consensus 74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~e~~~~~~~ 150 (191)
T cd06436 74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHK---NLLTILQDLEFFIIIAA 150 (191)
T ss_pred HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCC---CHHHHHHHHHHHHHHHH
Confidence 99875 37999999999999999999888887777777777654443221 121111111 1111
Q ss_pred HHHHhcCCCccccccceeeecHHHHHHhhh
Q psy3650 346 LTQLLLRPGVSDLTGSFRLYKKQVLENLVS 375 (435)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 375 (435)
..............|.+.+|||++++++++
T Consensus 151 ~~~~~~~~~~~~~~G~~~~~r~~~l~~vgg 180 (191)
T cd06436 151 TQSLRALTGTVGLGGNGQFMRLSALDGLIG 180 (191)
T ss_pred HHHHHHhcCcEEECCeeEEEeHHHHHHhhc
Confidence 111111111223467778999999999955
No 63
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.82 E-value=2.1e-19 Score=155.53 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=120.9
Q ss_pred CCCCCeEEEEEeCCC-CcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 3 EGNYPYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 3 ~~~~~~EiivvDd~S-~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
|...++||||||||| +|+|.++++++.++++ +.++..++|.|.+.++|.|+..|+||||+++|+|+.++|++++.+
T Consensus 25 q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 25 QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCccccCcHHHHHH
Confidence 444469999999998 7889999999987665 555567889999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650 82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ 160 (435)
Q Consensus 82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 160 (435)
++.+++ ++.+++.|............ ..+. .............. .....++..+++|+++++++++... .+.+|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~rr~~~~~~g~~~~~-~~~eD 176 (201)
T cd04195 102 LDFIEKNPEIDIVGGGVLEFDSDGNDI-GKRR-LPTSHDDILKFARR--RSPFNHPTVMFRKSKVLAVGGYQDL-PLVED 176 (201)
T ss_pred HHHHHhCCCeEEEcccEEEECCCCCee-cccc-CCCCHHHHHHHhcc--CCCCCChHHhhhHHHHHHcCCcCCC-CCchH
Confidence 999965 45677766544332221101 1111 11111111111111 1122344579999999999776544 77889
Q ss_pred HHHHHHHHhhcceeEeeee
Q psy3650 161 MEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~~~ 179 (435)
++++.|+..+|+++..+|.
T Consensus 177 ~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 177 YALWARMLANGARFANLPE 195 (201)
T ss_pred HHHHHHHHHcCCceecccH
Confidence 9999999999999877664
No 64
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.82 E-value=2.7e-19 Score=152.11 Aligned_cols=153 Identities=31% Similarity=0.462 Sum_probs=124.6
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
..++|||||||||+|+|.++++++.+++++ +.++....|.|++.|+|.|++.|.|||++++|+|+.++|++++.+++.
T Consensus 27 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 27 GYDYEIIFVDDGSTDRTLEILRELAARDPR--VKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 456999999999999999999999887764 555566789999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHH
Q psy3650 85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV 164 (435)
Q Consensus 85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 164 (435)
+ +++.++|+|.+..... ...+....................+..+++.++++++++.++...+...|..+.+.+
T Consensus 105 ~-~~~~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~ 178 (181)
T cd04187 105 W-EEGYDVVYGVRKNRKE-----SWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAW 178 (181)
T ss_pred H-hCCCcEEEEEecCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHH
Confidence 5 5678999988755431 334444444444444555666788888999999999999998888888887777666
Q ss_pred H
Q psy3650 165 I 165 (435)
Q Consensus 165 ~ 165 (435)
+
T Consensus 179 ~ 179 (181)
T cd04187 179 V 179 (181)
T ss_pred h
Confidence 4
No 65
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.82 E-value=3.1e-19 Score=158.87 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=115.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
+|||||||+|+|+|.+++++++.. +..++++++...|.|++.|+|.|+++|+||||+++|+|+.++|++++++++.+.+
T Consensus 33 ~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~ 111 (241)
T cd06427 33 LDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFAR 111 (241)
T ss_pred EEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence 899999999999999999987532 3456777777788899999999999999999999999999999999999999975
Q ss_pred CCCcEEE-EeeeecCCCccCcccchhhhhc----hHHHHHHHHhCCCccc-cccceehhhHHHHHHhhccccccCchhhH
Q psy3650 88 ENLDVVT-GTRYVGTGGVYGWDFKRKLVSR----GANYLTQLLLRPGVSD-LTGSFRLYKKQVLENLVSSCVSKGYVFQM 161 (435)
Q Consensus 88 ~~~~~v~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 161 (435)
.+.++++ +.+....... ..+..+.... .+..........+... ..|.+.++++++++++|+... ..+.+|+
T Consensus 112 ~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~eD~ 188 (241)
T cd06427 112 LDDKLACVQAPLNYYNAR--ENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDP-FNVTEDA 188 (241)
T ss_pred cCCCEEEEeCceEeeCCC--ccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCc-ccchhhH
Confidence 4344433 3332111111 1111111110 0111111111112222 234457899999999987654 4567899
Q ss_pred HHHHHHHhhcceeEeee
Q psy3650 162 EMVIRARQYNYTIGEVP 178 (435)
Q Consensus 162 ~l~~r~~~~g~~~~~~~ 178 (435)
+++.|+.+.|+++...+
T Consensus 189 ~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 189 DLGLRLARAGYRTGVLN 205 (241)
T ss_pred HHHHHHHHCCceEEEec
Confidence 99999999999987665
No 66
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.80 E-value=1.3e-18 Score=160.71 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=119.7
Q ss_pred CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
.|+..++|||||||||+|+|.++++++++++++++ ++ +++|.|.+.|+|.|++.|+||||+|+|+|+.+.|++++.+
T Consensus 30 ~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~--vi-~~~n~G~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l 106 (328)
T PRK10073 30 AQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVR--LL-HQANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETL 106 (328)
T ss_pred hCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEE--EE-ECCCCChHHHHHHHHHhCCCCEEEEECCCCccChhHHHHH
Confidence 45556799999999999999999999998887644 44 3579999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeec--CCCccCcccc-hhhhh----chHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650 82 IKLQQQENLDVVTGTRYVG--TGGVYGWDFK-RKLVS----RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 154 (435)
Q Consensus 82 ~~~~~~~~~~~v~g~~~~~--~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (435)
++.+.+++.|++++..... .......... ..... .....+...+........ ....+|+++++++.+.....
T Consensus 107 ~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~ 185 (328)
T PRK10073 107 MTMALEDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALSSRRWTHV-VWLGVYRRDFIVKNNIKFEP 185 (328)
T ss_pred HHHHHhCCCCEEEEccEEEEeCCCccccccccccccccceechHHHHHHHHhhCCCCcc-HhHHHHHHHHHHHcCCccCC
Confidence 9999878889987653221 1111000000 00000 011112222222222221 22458999999987543222
Q ss_pred cCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650 155 KGYVFQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 155 ~~~~~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
....+|..+..++...+.++..++..
T Consensus 186 ~~~~eD~~~~~~~~~~~~~v~~~~~~ 211 (328)
T PRK10073 186 GLHHQDIPWTTEVMFNALRVRYTEQS 211 (328)
T ss_pred CCEeccHHHHHHHHHHCCEEEEECCC
Confidence 22346899999988888887766543
No 67
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.80 E-value=1.5e-19 Score=152.71 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=121.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
|+||+||+.+.+.++|+++.+ |.+.++||+||||+|+|+|.+.++++....+. .+.++..++|.|++.++|.|++.
T Consensus 1 Viip~~n~~~~l~~~l~sl~~---q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~n~~~~~ 76 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLA---LDYPKLEVIVVDDGSTDDTLEILEELAALYIR-RVLVVRDKENGGKAGALNAGLRH 76 (180)
T ss_pred CeecccChHHHHHHHHHHHHh---CCCCceEEEEEeCCCccchHHHHHHHhccccc-eEEEEEecccCCchHHHHHHHHh
Confidence 689999999999999988866 55578999999999999999999887665433 45556678899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCc-eeccchhHHHHHHHHHH-HHHHhcCCCcccccc
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGG-VYGWDFKRKLVSRGANY-LTQLLLRPGVSDLTG 360 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 360 (435)
++++|++++|+|+.+++++|.+++..+ .+++.+++.+........ ................. ..............|
T Consensus 77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 156 (180)
T cd06423 77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSG 156 (180)
T ss_pred cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCc
Confidence 999999999999999999999995554 456677777776655432 11000000000000000 000011123345688
Q ss_pred ceeeecHHHHHHhhhcc
Q psy3650 361 SFRLYKKQVLENLVSSC 377 (435)
Q Consensus 361 ~~~~~~r~~~~~~~~~~ 377 (435)
++++++|+++++++++.
T Consensus 157 ~~~~~~~~~~~~~ggf~ 173 (180)
T cd06423 157 AFGAFRREALREVGGWD 173 (180)
T ss_pred hHHHHHHHHHHHhCCcc
Confidence 88999999999998643
No 68
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.80 E-value=2.1e-18 Score=152.50 Aligned_cols=169 Identities=17% Similarity=0.186 Sum_probs=119.1
Q ss_pred CCCCC--eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCC--CCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650 3 EGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFI 78 (435)
Q Consensus 3 ~~~~~--~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~--~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l 78 (435)
|+..+ +|||||||||+|+|.++++ +....+..++.++..+ .+.|++.++|.|++.+.+|||+++|+|+.++|++|
T Consensus 22 q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l 100 (229)
T cd04192 22 LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDADCVVPSNWL 100 (229)
T ss_pred CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCCcccCHHHH
Confidence 44444 8999999999999999988 5444555566666555 57899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhch---HH--HHHHHHhCCCccccccceehhhHHHHHHhhcccc
Q psy3650 79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---AN--YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 153 (435)
Q Consensus 79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (435)
+++++.+.+++..++.|......... +........ .. .......+. .....+++.++++++++++|++..
T Consensus 101 ~~l~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~rr~~~~~~ggf~~ 175 (229)
T cd04192 101 LTFVAFIQKEQIGLVAGPVIYFKGKS----LLAKFQRLDWLSLLGLIAGSFGLGK-PFMCNGANMAYRKEAFFEVGGFEG 175 (229)
T ss_pred HHHHHHhhcCCCcEEeeeeeecCCcc----HHHHHHHHHHHHHHHHHhhHHHhcC-ccccccceEEEEHHHHHHhcCCcc
Confidence 99999987778888887765442221 111111100 00 000111111 112235567999999999977653
Q ss_pred -ccCchhhHHHHHHHHhhcc-eeEee
Q psy3650 154 -SKGYVFQMEMVIRARQYNY-TIGEV 177 (435)
Q Consensus 154 -~~~~~~d~~l~~r~~~~g~-~~~~~ 177 (435)
.....+|.++++|+.+.|+ ++...
T Consensus 176 ~~~~~~eD~~~~~~~~~~g~~~~~~~ 201 (229)
T cd04192 176 NDHIASGDDELLLAKVASKYPKVAYL 201 (229)
T ss_pred ccccccCCHHHHHHHHHhCCCCEEEe
Confidence 3455678999999999999 66544
No 69
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.4e-18 Score=150.32 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=119.6
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|...++|||||||||+|+|.++++++..+ ++++..++|.|++.++|.|++.|++|||+++|+|+.+.|+++..++
T Consensus 23 q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~ 97 (202)
T cd06433 23 QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAMNKGIALATGDIIGFLNSDDTLLPGALLAVV 97 (202)
T ss_pred CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHH
Confidence 44445999999999999999999998653 2233357889999999999999999999999999999999999999
Q ss_pred HHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhH
Q psy3650 83 KLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQM 161 (435)
Q Consensus 83 ~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 161 (435)
..+ ..++.+++.|................ ............ . ...+...+++++++++++.+.....+.+|.
T Consensus 98 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~ 170 (202)
T cd06433 98 AAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFLLYG--M-PICHQATFFRRSLFEKYGGFDESYRIAADY 170 (202)
T ss_pred HHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHHhhc--C-cccCcceEEEHHHHHHhCCCchhhCchhhH
Confidence 555 44678999988755433221111110 000111111111 1 112334579999999997655555567799
Q ss_pred HHHHHHHhhcceeEeeeeEee
Q psy3650 162 EMVIRARQYNYTIGEVPISFV 182 (435)
Q Consensus 162 ~l~~r~~~~g~~~~~~~~~~~ 182 (435)
+++.|+.+.|+++...|....
T Consensus 171 ~~~~r~~~~g~~~~~~~~~~~ 191 (202)
T cd06433 171 DLLLRLLLAGKIFKYLPEVLA 191 (202)
T ss_pred HHHHHHHHcCCceEecchhhh
Confidence 999999999999876665543
No 70
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.79 E-value=1.7e-18 Score=149.91 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=119.9
Q ss_pred CCCCCeEEEEEeCCCCcChH-HHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~-~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
|+..++|||||||||+|++. ++++++....+. +.++..++|.|.+.++|.|++.|++||++++|+|+.++|++++.+
T Consensus 27 q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~ 104 (202)
T cd04184 27 QTYPNWELCIADDASTDPEVKRVLKKYAAQDPR--IKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEV 104 (202)
T ss_pred CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCC--EEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHH
Confidence 44456999999999999755 566666665554 544557789999999999999999999999999999999999999
Q ss_pred HHHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650 82 IKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ 160 (435)
Q Consensus 82 ~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 160 (435)
++.+ .+++.+++++.......... ............ ..... ....+++.++++++++++|++.......+|
T Consensus 105 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~r~~~~~iggf~~~~~~~eD 176 (202)
T cd04184 105 VKALNEHPDADLIYSDEDKIDEGGK---RSEPFFKPDWSP--DLLLS---QNYIGHLLVYRRSLVRQVGGFREGFEGAQD 176 (202)
T ss_pred HHHHHhCCCCCEEEccHHhccCCCC---EeccccCCCCCH--HHhhh---cCCccceEeEEHHHHHHhCCCCcCcccchh
Confidence 9999 55778888776533221110 011111000000 01111 123456678999999999776555446789
Q ss_pred HHHHHHHHhhcceeEeeeeE
Q psy3650 161 MEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~~~~ 180 (435)
+++++|+.++|+++..+|-.
T Consensus 177 ~~l~~rl~~~g~~~~~~~~~ 196 (202)
T cd04184 177 YDLVLRVSEHTDRIAHIPRV 196 (202)
T ss_pred HHHHHHHHhccceEEEccHh
Confidence 99999999999998887743
No 71
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.79 E-value=1.2e-18 Score=164.45 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=122.7
Q ss_pred CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650 3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFI 78 (435)
Q Consensus 3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l 78 (435)
+|+|| +||||+||+|+|.|.++++++++++|+.++.++..+++.| +..+++.+++.|+|||++++|+|+.++|++|
T Consensus 65 ~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 65 RQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred hcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHH
Confidence 45666 9999999999999999999999999887776665554444 6677778899999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhc----hHHH--HHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650 79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR----GANY--LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC 152 (435)
Q Consensus 79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (435)
+.+++.+++++.++|.+........ .+...+... .+.. ......+ ......|.+.++||++++++|++.
T Consensus 145 ~~lv~~~~~~~v~~V~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~a~RR~~l~~iGGf~ 219 (373)
T TIGR03472 145 RQVVAPLADPDVGLVTCLYRGRPVP----GFWSRLGAMGINHNFLPSVMVARALG-RARFCFGATMALRRATLEAIGGLA 219 (373)
T ss_pred HHHHHHhcCCCcceEeccccCCCCC----CHHHHHHHHHhhhhhhHHHHHHHhcc-CCccccChhhheeHHHHHHcCChH
Confidence 9999999777888888754322111 122111111 0000 0011111 112234667799999999998776
Q ss_pred cc-cCchhhHHHHHHHHhhcceeEeee
Q psy3650 153 VS-KGYVFQMEMVIRARQYNYTIGEVP 178 (435)
Q Consensus 153 ~~-~~~~~d~~l~~r~~~~g~~~~~~~ 178 (435)
.. ....+|+++..++.++|+++...+
T Consensus 220 ~~~~~~~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 220 ALAHHLADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred HhcccchHHHHHHHHHHHcCCeEEecc
Confidence 43 345689999999999999986544
No 72
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.79 E-value=3.8e-18 Score=151.11 Aligned_cols=169 Identities=19% Similarity=0.245 Sum_probs=115.9
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhC--CceEEEccCCCCCC-HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLG-LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~--~~~i~~~~~~~n~g-~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
+||||||| |+|+|.++++++..+++ .+++.++...++.| +++++|.|++.|+||||+++|+|+.++|++|+.+...
T Consensus 33 ~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 33 LEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred eEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh
Confidence 79999988 99999999998876543 33566555565666 6889999999999999999999999999999998887
Q ss_pred HhcCCCcEEEEeeeecCCCccCcccchhhhhchHH---HHHH--HHhCCCccccccceehhhHHHHHHhhccccccCchh
Q psy3650 85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN---YLTQ--LLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF 159 (435)
Q Consensus 85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (435)
+.++++++|.+......... .+.......... .... ...........++..+|||++++++|+... ..+.+
T Consensus 112 ~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~E 187 (232)
T cd06437 112 FADPKLGFVQTRWGHINANY---SLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGWNH-DTLTE 187 (232)
T ss_pred hcCCCeEEEecceeeEcCCC---chhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCCCC-Ccchh
Confidence 76566677776543222111 111111110000 0000 011111222334556899999999977654 44678
Q ss_pred hHHHHHHHHhhcceeEeeeeEe
Q psy3650 160 QMEMVIRARQYNYTIGEVPISF 181 (435)
Q Consensus 160 d~~l~~r~~~~g~~~~~~~~~~ 181 (435)
|++++.|+...|+++...|...
T Consensus 188 D~~l~~rl~~~G~~~~~~~~~~ 209 (232)
T cd06437 188 DLDLSYRAQLKGWKFVYLDDVV 209 (232)
T ss_pred hHHHHHHHHHCCCeEEEeccce
Confidence 9999999999999988877543
No 73
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.79 E-value=2e-17 Score=164.25 Aligned_cols=230 Identities=12% Similarity=0.151 Sum_probs=153.1
Q ss_pred CCCCcceEEEEeccCCCC-----ChHHHHHHHHHHhhcCC-CCeEEEEEeCCCCcchHHH----HHHHHHHhC-CceEEE
Q psy3650 196 DSVKNKYTVLLPTYNEKE-----NLPIIVYLITKYMDEGN-YPYEIIVIDDGSPDGTLDA----AKQLQSIYG-SEKIVL 264 (435)
Q Consensus 196 ~~~~~~isivip~~n~~~-----~l~~~l~~l~~~~~~~~-~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~~~i~~ 264 (435)
....++++|+||+|||+. .++.+++++.+ +.+ .++|++++||++++++... +.+++++++ ..++.+
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~---~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y 196 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA---TGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY 196 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh---cCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 345789999999999885 35555555543 333 4799999999999987543 345555543 336667
Q ss_pred ecCCCCCC-HHHHHHHHHhh--ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650 265 KPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVS 340 (435)
Q Consensus 265 ~~~~~n~g-~~~a~n~g~~~--a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
.....|.| |+.+++.+++. +++||++++|+|..++++.+.+++..++ ++++++|++.....+.. +++.++..
T Consensus 197 r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~----slfaR~qq 272 (691)
T PRK05454 197 RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGAD----TLFARLQQ 272 (691)
T ss_pred EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCC----CHHHHHHH
Confidence 66666666 78888888988 5669999999999999999999999986 77888888765544433 23333222
Q ss_pred ---HHHHHHHH--Hhc-CCCccccccceeeecHHHHHHhhhcc--------cCcccchhhHHHHHHHHCCCcEEEeeeEE
Q psy3650 341 ---RGANYLTQ--LLL-RPGVSDLTGSFRLYKKQVLENLVSSC--------VSKGYVFQMEMVIRARQYNYTIGEVPISF 406 (435)
Q Consensus 341 ---~~~~~~~~--~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~~D~el~lr~~~~G~~i~~~p~~~ 406 (435)
..+..+.. ... ...-....|...++|+++|.+.++.. ......+|+++..+++.+||++.++|...
T Consensus 273 f~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~ 352 (691)
T PRK05454 273 FATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLP 352 (691)
T ss_pred HHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence 22211111 000 01222345666899999999985422 13456689999999999999999999843
Q ss_pred -eecccccccCC-HHHHHHHHHHHHHHh
Q psy3650 407 -VDRVYGESKLG-GTEIFQFAKALLYLF 432 (435)
Q Consensus 407 -~~~~~~~s~~~-~~~~~~~~~~~~~~f 432 (435)
.+.....+-.. .++..|+....++.+
T Consensus 353 ~~~ee~P~tl~~~~~qr~RW~~G~lQ~l 380 (691)
T PRK05454 353 GSYEELPPNLLDELKRDRRWCQGNLQHL 380 (691)
T ss_pred cccccCCCCHHHHHHHHHHHHhchHHHH
Confidence 33222222222 455666666655543
No 74
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.79 E-value=2.9e-18 Score=162.46 Aligned_cols=169 Identities=22% Similarity=0.335 Sum_probs=120.7
Q ss_pred CCCCC--eEEEEEeCCCCcChHHHHHHHHHHhCCc-eEEEccCC----CCCCHHHHHHHHHhhcc-----CCEEEEEcCC
Q psy3650 3 EGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPRK----KKLGLGTAYMHGLKYAT-----GNFIIIMDAD 70 (435)
Q Consensus 3 ~~~~~--~EiivvDd~S~d~t~~i~~~~~~~~~~~-~i~~~~~~----~n~g~~~a~n~gl~~a~-----gd~i~~lD~D 70 (435)
+|+|| +|||||||+|+|+|.++++++.+++|.. +++++..+ .+.|++.|+|.|++.|+ +||++++|+|
T Consensus 64 ~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD 143 (384)
T TIGR03469 64 EQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDAD 143 (384)
T ss_pred hCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 34554 8999999999999999999998877621 45554422 34689999999999999 9999999999
Q ss_pred CCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh------C--CCccccccceehhhH
Q psy3650 71 LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL------R--PGVSDLTGSFRLYKK 142 (435)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~ 142 (435)
+.++|++++++++.+++++.+++.+........ +..+.....+........ . .......|++.+++|
T Consensus 144 ~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr 218 (384)
T TIGR03469 144 IAHGPDNLARLVARARAEGLDLVSLMVRLRCES-----FWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRR 218 (384)
T ss_pred CCCChhHHHHHHHHHHhCCCCEEEecccccCCC-----HHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEH
Confidence 999999999999999888888887654333221 112211111111111111 0 111223577899999
Q ss_pred HHHHHhhccccc-cCchhhHHHHHHHHhhcceeEe
Q psy3650 143 QVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGE 176 (435)
Q Consensus 143 ~~~~~~~~~~~~-~~~~~d~~l~~r~~~~g~~~~~ 176 (435)
++++++|++... ....+|.++..|+++.|+++..
T Consensus 219 ~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~ 253 (384)
T TIGR03469 219 EALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWL 253 (384)
T ss_pred HHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEE
Confidence 999999776542 3467899999999999987655
No 75
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.78 E-value=3.8e-18 Score=151.36 Aligned_cols=168 Identities=16% Similarity=0.167 Sum_probs=117.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCC-CHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKL-GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~-g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
+|||||||||+|+|.++++++..++ .++++....|. ++++++|.|++.|+||||+++|+|+.++|++|+.+++.+.
T Consensus 34 ~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (234)
T cd06421 34 LRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFL 110 (234)
T ss_pred EEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHh
Confidence 7999999999999999999987654 23333344444 4688899999999999999999999999999999999997
Q ss_pred c-CCCcEEEEeeeecCCCccCcccchhhhh---chHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650 87 Q-ENLDVVTGTRYVGTGGVYGWDFKRKLVS---RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME 162 (435)
Q Consensus 87 ~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 162 (435)
+ ++.+++.|........... ...+.... .............+.....+++.+++++++++++++. ...+.+|++
T Consensus 111 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~~~-~~~~~eD~~ 188 (234)
T cd06421 111 DDPKVALVQTPQFFYNPDPFD-WLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDEIGGFP-TDSVTEDLA 188 (234)
T ss_pred cCCCeEEEecceEEecCCcch-hHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHHhCCCC-ccceeccHH
Confidence 7 5667777765443322110 01111110 0111111111112233344668899999999997755 345678999
Q ss_pred HHHHHHhhcceeEeeeeE
Q psy3650 163 MVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 163 l~~r~~~~g~~~~~~~~~ 180 (435)
++.|+.+.|+++...|..
T Consensus 189 l~~r~~~~g~~i~~~~~~ 206 (234)
T cd06421 189 TSLRLHAKGWRSVYVPEP 206 (234)
T ss_pred HHHHHHHcCceEEEecCc
Confidence 999999999998776644
No 76
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.78 E-value=2.4e-17 Score=162.38 Aligned_cols=200 Identities=12% Similarity=0.063 Sum_probs=141.6
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY 277 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~ 277 (435)
..+.+||+||+|||++.+.++++++.+. ..|++++|+++....+.+|.+.++++...+|.++++.++++++.||+.|+
T Consensus 69 ~~~~vsIlVPa~nE~~VI~~~v~~ll~~--ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~AL 146 (703)
T PRK15489 69 DEQPLAIMVPAWKEYDVIAKMIENMLAT--LDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCL 146 (703)
T ss_pred CCCceEEEEeCCCcHHHHHHHHHHHHhc--CCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHH
Confidence 4579999999999999999999987543 45778999996444444888889999888888788777887789999999
Q ss_pred HHHHhhc-------cCC--EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH-HHHHH---H
Q psy3650 278 MHGLKYA-------TGN--FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL-VSRGA---N 344 (435)
Q Consensus 278 n~g~~~a-------~~d--~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~---~ 344 (435)
|.|+..+ .++ .+++.|+|+.++|+.|..| +++.. +.+++.++....... ..++.... ...+. .
T Consensus 147 N~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~~--~~~~l~~~~~~Efa~~~~ 222 (703)
T PRK15489 147 NWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLP-RKDLVQLPVLSLERK--WYEWVAGTYMDEFAEWHQ 222 (703)
T ss_pred HHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcC-CcceeeeeeccCCCc--cccHHHHHHHHHHHHHhh
Confidence 9999986 333 4999999999999999877 44433 336777754332211 01222222 11111 1
Q ss_pred --HHHHHhcCCCccccccceeeecHHHHHHh---hh-ccc-CcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 345 --YLTQLLLRPGVSDLTGSFRLYKKQVLENL---VS-SCV-SKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 345 --~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~-~~~-~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
...+...+..+ ..+|...+|+|++++++ ++ ..+ ....+||+|+.+|++..|++..++-+
T Consensus 223 ~~l~~r~~l~~~i-pl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~ 288 (703)
T PRK15489 223 KDLVVRESLTGTV-PSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRF 288 (703)
T ss_pred hHHHHHHHcCCce-eccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEE
Confidence 12223334444 24555689999999987 32 233 36778999999999999999988444
No 77
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.78 E-value=2.4e-18 Score=150.43 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=117.7
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|+..++|||||||||+|+|.++++++++++| ..++++....|.|.+.++|.|+..++||||+++|+|+.++|++|+.++
T Consensus 23 q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~ 101 (214)
T cd04196 23 QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQDDIWLPDKLERLL 101 (214)
T ss_pred CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCCcccChhHHHHHH
Confidence 4434699999999999999999999998876 356666778899999999999999999999999999999999999999
Q ss_pred HHHhc-CCCcEEEEeeeecCCCc--cCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchh
Q psy3650 83 KLQQQ-ENLDVVTGTRYVGTGGV--YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF 159 (435)
Q Consensus 83 ~~~~~-~~~~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (435)
+.+.+ +..+++.+......... ........................ ...+...++++++++.++.......+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 178 (214)
T cd04196 102 KAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQN---VVTGCTMAFNRELLELALPFPDADVIMH 178 (214)
T ss_pred HHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhC---ccCCceeeEEHHHHHhhccccccccccc
Confidence 99544 45566666543322211 111111111100000111111111 1224456899999999976555546777
Q ss_pred hHHHHHHHHhhcceeEeeee
Q psy3650 160 QMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 160 d~~l~~r~~~~g~~~~~~~~ 179 (435)
|.++..++.+ +.++..++.
T Consensus 179 D~~~~~~~~~-~~~~~~~~~ 197 (214)
T cd04196 179 DWWLALLASA-FGKVVFLDE 197 (214)
T ss_pred hHHHHHHHHH-cCceEEcch
Confidence 8888887766 556665554
No 78
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.77 E-value=2.1e-18 Score=154.49 Aligned_cols=173 Identities=21% Similarity=0.114 Sum_probs=122.6
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 85 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 85 (435)
.++|||||||||+|+|.++++++.++++. +.++.. ++.|.+.++|.|++.|++||++++|+|+.++|++|+++++.+
T Consensus 30 ~~~evivvd~~s~d~~~~~~~~~~~~~~~--v~~i~~-~~~~~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~ 106 (249)
T cd02525 30 DLIEIIVVDGGSTDGTREIVQEYAAKDPR--IRLIDN-PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEAL 106 (249)
T ss_pred CccEEEEEeCCCCccHHHHHHHHHhcCCe--EEEEeC-CCCCchHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 35999999999999999999999877654 555443 456899999999999999999999999999999999999998
Q ss_pred hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHH---HHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650 86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL---TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME 162 (435)
Q Consensus 86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 162 (435)
.+++.+++.|.............. ........... .............+++.+++++++.+++.........+|.+
T Consensus 107 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~ 185 (249)
T cd02525 107 KRTGADNVGGPMETIGESKFQKAI-AVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAE 185 (249)
T ss_pred hcCCCCEEecceecCCCChHHHHH-HHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcccCccchhH
Confidence 888888888876544332111000 00000000000 00000000112346677999999999976655555578999
Q ss_pred HHHHHHhhcceeEeeeeEee
Q psy3650 163 MVIRARQYNYTIGEVPISFV 182 (435)
Q Consensus 163 l~~r~~~~g~~~~~~~~~~~ 182 (435)
++.|+.+.|+++...|....
T Consensus 186 l~~r~~~~G~~~~~~~~~~~ 205 (249)
T cd02525 186 LNYRLRKAGYKIWLSPDIRV 205 (249)
T ss_pred HHHHHHHcCcEEEEcCCeEE
Confidence 99999999999987775443
No 79
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.77 E-value=8.1e-18 Score=162.31 Aligned_cols=169 Identities=18% Similarity=0.245 Sum_probs=123.4
Q ss_pred CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
++.|| +|||||||||+|+|.++++++.+++|+ +.++..++|.|+++|+|.|++.+++||++++|+|+.++|++++.+
T Consensus 78 ~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~--v~~i~~~~n~Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l 155 (420)
T PRK11204 78 ALRYPNYEVIAINDGSSDNTGEILDRLAAQIPR--LRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYM 155 (420)
T ss_pred hCCCCCeEEEEEECCCCccHHHHHHHHHHhCCc--EEEEEcCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHH
Confidence 34555 999999999999999999999888775 555556789999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650 82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 154 (435)
Q Consensus 82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (435)
++.+++ ++.++|.|......... +........+. .......+ ......|.+.++|+++++++|+...
T Consensus 156 ~~~~~~~~~v~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~vgg~~~- 229 (420)
T PRK11204 156 VEHFLHNPRVGAVTGNPRIRNRST----LLGRIQVGEFSSIIGLIKRAQRVYG-RVFTVSGVITAFRKSALHEVGYWST- 229 (420)
T ss_pred HHHHHhCCCeEEEECCceeccchh----HHHHHHHHHHHHhhhHHHHHHHHhC-CceEecceeeeeeHHHHHHhCCCCC-
Confidence 999954 56777777654433211 11111100000 00111111 2223346678999999999976543
Q ss_pred cCchhhHHHHHHHHhhcceeEeeee
Q psy3650 155 KGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 155 ~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
....+|.|+..|+.++|+++...|.
T Consensus 230 ~~~~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 230 DMITEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred CcccchHHHHHHHHHcCCeEEeccc
Confidence 3457899999999999999877664
No 80
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.76 E-value=1e-17 Score=152.63 Aligned_cols=172 Identities=24% Similarity=0.313 Sum_probs=118.0
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHh-CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC-CCCCcHHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMI 82 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~-~~~~~l~~~~ 82 (435)
..++|||||||||+|+|.++++++..+. +...+. .....|.|++.|+|.|+..++||||+++|+|+. ++|++++.++
T Consensus 60 ~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~-~~~~~n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~ 138 (306)
T PRK13915 60 PLVDELIVIDSGSTDATAERAAAAGARVVSREEIL-PELPPRPGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLL 138 (306)
T ss_pred CCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh-hccccCCCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHH
Confidence 3468999999999999999999875431 111111 123678999999999999999999999999996 8999999999
Q ss_pred HHHh-cCCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhC--CCccccccceehhhHHHHHHhhccccccCc
Q psy3650 83 KLQQ-QENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGY 157 (435)
Q Consensus 83 ~~~~-~~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (435)
+.+. ++++++|.|....... ..................+...... ..+.+..+|++++++++++.+. +..+|
T Consensus 139 ~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~~~~~l~~i~dp~sG~~a~rr~~l~~l~---~~~~y 215 (306)
T PRK13915 139 GPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNLLRPELAGFVQPLGGEYAGRRELLESLP---FVPGY 215 (306)
T ss_pred HHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHHHHHhhhcccCcchHhHHHHHHHHHhCC---CCCCC
Confidence 9996 5678999886332110 0000001111111111111111111 3566788899999999999874 34678
Q ss_pred hhhHHHHHHHH-hhcc-eeEeeeeE
Q psy3650 158 VFQMEMVIRAR-QYNY-TIGEVPIS 180 (435)
Q Consensus 158 ~~d~~l~~r~~-~~g~-~~~~~~~~ 180 (435)
..|.++...+. +.|. ++.+++..
T Consensus 216 g~e~~~l~~~~~~~g~~~i~~V~l~ 240 (306)
T PRK13915 216 GVEIGLLIDTLDRLGLDAIAQVDLG 240 (306)
T ss_pred eehHHHHHHHHHHhCcCceEEEEec
Confidence 88999999886 4677 77777654
No 81
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.76 E-value=7.7e-18 Score=145.80 Aligned_cols=148 Identities=23% Similarity=0.246 Sum_probs=117.4
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCCCCCCCcHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIP 79 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~~~~~~~l~ 79 (435)
|+..++|||||||||+|+|.++++++.++.+ +.++..++|.|.+.++|.|++.| .+||++++|+|+.++|++++
T Consensus 22 q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~ 98 (202)
T cd04185 22 QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALE 98 (202)
T ss_pred ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHH
Confidence 4444699999999999999999999876543 56666788999999999999886 58999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcccc-ccCch
Q psy3650 80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYV 158 (435)
Q Consensus 80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 158 (435)
++++.++++..+++.+.+....+ ..+..++++++++.++.... ...+.
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (202)
T cd04185 99 KLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVGVLISRRVVEKIGLPDKEFFIWG 147 (202)
T ss_pred HHHHHHhcCCceEecceeEcCCC-------------------------------ceEEEEEeHHHHHHhCCCChhhhccc
Confidence 99999976667776665433321 12336899999999975443 34567
Q ss_pred hhHHHHHHHHhhcceeEeeeeEeeecc
Q psy3650 159 FQMEMVIRARQYNYTIGEVPISFVDRV 185 (435)
Q Consensus 159 ~d~~l~~r~~~~g~~~~~~~~~~~~r~ 185 (435)
+|.++..|+.+.|+++ ..|.....+.
T Consensus 148 eD~~~~~r~~~~G~~i-~~~~~~~~h~ 173 (202)
T cd04185 148 DDTEYTLRASKAGPGI-YVPDAVVVHK 173 (202)
T ss_pred hHHHHHHHHHHcCCcE-EecceEEEEc
Confidence 8999999999999999 6665555444
No 82
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.76 E-value=2.4e-17 Score=147.83 Aligned_cols=168 Identities=20% Similarity=0.261 Sum_probs=119.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
+|||||||+|+|+|.++++++.++ .+.++..++|.|+++++|.|++.|+|||++++|+|+.++|++++++++.+.+
T Consensus 61 ~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 61 LEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD 136 (251)
T ss_pred EEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence 899999999999999999998764 3555567889999999999999999999999999999999999999999976
Q ss_pred CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh-CCCccccccceehhhHHHHHHhhccccccCchhhHHHHHH
Q psy3650 88 ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR 166 (435)
Q Consensus 88 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r 166 (435)
++.+++.|......+.. .................... ........|++.++++++++.. ......+|.++..+
T Consensus 137 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~----~~~~~~eD~~l~~~ 210 (251)
T cd06439 137 PSVGAVSGELVIVDGGG--SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRPL----PADTINDDFVLPLR 210 (251)
T ss_pred CCccEEEeEEEecCCcc--cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcCC----CcccchhHHHHHHH
Confidence 77888888765543321 00000111011111111111 1123334456678999999822 22345679999999
Q ss_pred HHhhcceeEeeeeEeeecc
Q psy3650 167 ARQYNYTIGEVPISFVDRV 185 (435)
Q Consensus 167 ~~~~g~~~~~~~~~~~~r~ 185 (435)
+.+.|+++...|.....+.
T Consensus 211 ~~~~G~~~~~~~~~~~~~~ 229 (251)
T cd06439 211 IARQGYRVVYEPDAVAYEE 229 (251)
T ss_pred HHHcCCeEEeccccEEEEe
Confidence 9999999877765544333
No 83
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.76 E-value=2.1e-17 Score=146.63 Aligned_cols=164 Identities=16% Similarity=0.245 Sum_probs=111.7
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
..++|||||||||+|+|.++++++.++. ++.++. ++|.|.++|+|.|++.|+||||+++|+||.+.|+.++.+.+.
T Consensus 31 ~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~-~~~~G~~~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 31 GISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVS-EPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 3469999999999999999999986432 355554 456799999999999999999999999999999876654444
Q ss_pred HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHH
Q psy3650 85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV 164 (435)
Q Consensus 85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 164 (435)
..+++.++++|.+....+.. ....+..... ..... ... ......+++++.++.. ++.....+.+|++++
T Consensus 107 ~~~~~~~~v~g~~~~~~~~~--~~~~~~~~~~------~~~~~-~~~-~~~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~ 175 (248)
T PRK10063 107 KMQKDNAMIIGDALLDFGDG--HKIKRSAKPG------WYIYH-SLP-ASHQAIFFPVSGLKKW-RYDLQYKVSSDYALA 175 (248)
T ss_pred HhCCCCeEEEeeeEEEcCCC--cEEEEccCCh------hHHhc-CCC-CCCcEEEEEHHHHhcC-CCCcccchHHhHHHH
Confidence 44456778888875433221 0111111110 01111 111 1122356788888753 334445667899999
Q ss_pred HHHHhhcceeEeeeeEeee
Q psy3650 165 IRARQYNYTIGEVPISFVD 183 (435)
Q Consensus 165 ~r~~~~g~~~~~~~~~~~~ 183 (435)
+|+.+.|+++..+|.....
T Consensus 176 lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 176 ARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred HHHHHcCCcEEEcCceeEE
Confidence 9999999999888866554
No 84
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.76 E-value=2.2e-17 Score=159.56 Aligned_cols=169 Identities=15% Similarity=0.205 Sum_probs=122.6
Q ss_pred CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
+++|| +|||||||||+|+|.++++++.+++|++++ +..++|.|+++|+|.|++.++|||++++|+|+.++|++++.+
T Consensus 99 ~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~v--v~~~~n~Gka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~l 176 (444)
T PRK14583 99 AQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRV--IHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYL 176 (444)
T ss_pred cCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEE--EEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHH
Confidence 34454 999999999999999999999888876444 445788999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHH----HHH--HHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650 82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN----YLT--QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 154 (435)
Q Consensus 82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (435)
++.+.+ ++.++|.|.+....... +..+.....+. ... ....+ ......|++.++++++++++|+...
T Consensus 177 v~~~~~~~~~g~v~g~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~vGg~~~- 250 (444)
T PRK14583 177 VAPLIANPRTGAVTGNPRIRTRST----LIGRVQVGEFSSIIGLIKRTQRVYG-QVFTVSGVVAAFRRRALADVGYWSP- 250 (444)
T ss_pred HHHHHhCCCeEEEEccceecCCCc----chhhHHHHHHHHHHHHHHHHHHHhC-CceEecCceeEEEHHHHHHcCCCCC-
Confidence 998865 55777777654432221 11111110111 011 11112 2223345667899999999976543
Q ss_pred cCchhhHHHHHHHHhhcceeEeeee
Q psy3650 155 KGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 155 ~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
....+|.|+..|..++|+++...|.
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEeec
Confidence 3467899999999999998876663
No 85
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.76 E-value=1.2e-17 Score=148.34 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=116.2
Q ss_pred CCC-CeEEEEEeCCCCcChH-HHHHHHHHHhCCceEEEccCCCCCC-HHHHHHHHHhhcc--CCEEEEEcCCCCCCCCcH
Q psy3650 4 GNY-PYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLG-LGTAYMHGLKYAT--GNFIIIMDADLSHHPKFI 78 (435)
Q Consensus 4 ~~~-~~EiivvDd~S~d~t~-~i~~~~~~~~~~~~i~~~~~~~n~g-~~~a~n~gl~~a~--gd~i~~lD~D~~~~~~~l 78 (435)
+.+ ++|||||||+|+|+|. +++++++++.+ .++.++...+|.| +++|+|.|++.+. +|||+++|+|+.++|++|
T Consensus 24 q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l 102 (236)
T cd06435 24 LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWL 102 (236)
T ss_pred CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHH
Confidence 444 5999999999999985 77777776543 2455555566667 5899999999986 699999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH-HHHHH---hCCCccccccceehhhHHHHHHhhccccc
Q psy3650 79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY-LTQLL---LRPGVSDLTGSFRLYKKQVLENLVSSCVS 154 (435)
Q Consensus 79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (435)
..+++.++++++++|.+......... ..+ .......... ..... .........|.+.++++++++++|++...
T Consensus 103 ~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~ 179 (236)
T cd06435 103 KRLVPIFDDPRVGFVQAPQDYRDGEE--SLF-KRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDEW 179 (236)
T ss_pred HHHHHHhcCCCeeEEecCccccCCCc--cHH-HHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCCc
Confidence 99999997667777766432222110 111 1111111100 00000 01111223455679999999999876543
Q ss_pred cCchhhHHHHHHHHhhcceeEeeee
Q psy3650 155 KGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 155 ~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
.+.+|++++.|+.+.|+++...|.
T Consensus 180 -~~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 180 -CITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred -cccchHHHHHHHHHCCcEEEEcch
Confidence 357899999999999999877653
No 86
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.75 E-value=2.8e-17 Score=139.83 Aligned_cols=149 Identities=20% Similarity=0.294 Sum_probs=108.6
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|+..++|||||||+|+|+|.++++++.+..+...+.+.....+.|+++++|.|++.|+|||++++|+|+.++|++|+.++
T Consensus 22 q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~ 101 (182)
T cd06420 22 QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHI 101 (182)
T ss_pred ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCCEEEEEcCCcccCHHHHHHHH
Confidence 45567999999999999999999998775443333343445566889999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCc-hhh
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGY-VFQ 160 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~d 160 (435)
+.+ .+...++|.+......... ....++..+++|+.+.+++++... ..+ .+|
T Consensus 102 ~~~--~~~~~v~g~~~~~~~~~~~------------------------~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD 155 (182)
T cd06420 102 ELA--EPGVFLSGSRVLLNEKLTE------------------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGED 155 (182)
T ss_pred HHh--CCCcEEecceeecccccce------------------------eEeccceEEEEHHHHHHhCCCCcccccCCcch
Confidence 988 3445667776544332110 122234456677777777655432 233 579
Q ss_pred HHHHHHHHhhcceeEee
Q psy3650 161 MEMVIRARQYNYTIGEV 177 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~ 177 (435)
++++.|+.++|+....+
T Consensus 156 ~~l~~r~~~~g~~~~~~ 172 (182)
T cd06420 156 SELVARLLNSGIKFRKL 172 (182)
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 99999999999665444
No 87
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.75 E-value=3.3e-17 Score=147.04 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=111.0
Q ss_pred CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
.|+..++|||||||||+| .++++++.++....+|.++..+.|.|.+.|+|.|++.|+||||+|+|+|+.+.|++|+.+
T Consensus 29 ~Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~ 106 (279)
T PRK10018 29 RQDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVF 106 (279)
T ss_pred hCCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHH
Confidence 455556999999999984 567777776555557888888899999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650 82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ 160 (435)
Q Consensus 82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 160 (435)
++.+.+ ...+++++......+.....+......+........ +...... +...++.+..+...+ +.......+|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~n~i---g~~~~~~~~~~~~~~-fd~~~~~~eD 181 (279)
T PRK10018 107 LAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRL-FYKRNII---GNQVFTWAWRFKECL-FDTELKAAQD 181 (279)
T ss_pred HHHHHhCCCccEEEccceeecCcccccccccCCCCCCCCCHHH-HHHhcCc---Cceeeehhhhhhhcc-cCCCCCcccc
Confidence 998866 566777776432222111111000000000000111 1111211 222234445554433 3344566789
Q ss_pred HHHHHHHHhhcceeEeeee
Q psy3650 161 MEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~~~ 179 (435)
+++++|+...|.....+|.
T Consensus 182 ydlwlrl~~~~~~~~~~~~ 200 (279)
T PRK10018 182 YDIFLRMVVEYGEPWKVEE 200 (279)
T ss_pred HHHHHHHHHhcCceEeecc
Confidence 9999999988877655543
No 88
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.74 E-value=2.3e-18 Score=152.14 Aligned_cols=178 Identities=21% Similarity=0.278 Sum_probs=110.7
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
.++||+||||+|+|+|.+.++++.+.+|..++.+++.+.|.| ++.++|.|++.+++|||+++|+|+.++|++|..++
T Consensus 29 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~ 108 (228)
T PF13641_consen 29 PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYILFLDDDTVLDPDWLERLL 108 (228)
T ss_dssp HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHH
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHH
Confidence 359999999999999999999999888876677766655544 78999999999999999999999999999999999
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhh-hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhH
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQM 161 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 161 (435)
+.++++++++|.+.......... ........ ..............+.....|++.+|++++++++|++.. ....+|.
T Consensus 109 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~ 186 (228)
T PF13641_consen 109 AAFADPGVGAVGGPVFPDNDRNW-LTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-FILGEDF 186 (228)
T ss_dssp HHHHBSS--EEEEEEEETTCCCE-EEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S-SSSSHHH
T ss_pred HHHHhCCCCeEeeeEeecCCCCH-HHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC-CCcccHH
Confidence 99977889999987754432211 11111100 000000000001112222346788999999999976555 5566899
Q ss_pred HHHHHHHhhcceeEeeeeEeeecc
Q psy3650 162 EMVIRARQYNYTIGEVPISFVDRV 185 (435)
Q Consensus 162 ~l~~r~~~~g~~~~~~~~~~~~r~ 185 (435)
++..|+.+.|+++...|.....+.
T Consensus 187 ~l~~r~~~~G~~~~~~~~~~v~~~ 210 (228)
T PF13641_consen 187 DLCLRLRAAGWRIVYAPDALVYHE 210 (228)
T ss_dssp HHHHHHHHTT--EEEEEEEEEEE-
T ss_pred HHHHHHHHCCCcEEEECCcEEEEe
Confidence 999999999999998886554444
No 89
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.74 E-value=3.9e-18 Score=142.86 Aligned_cols=144 Identities=24% Similarity=0.335 Sum_probs=105.8
Q ss_pred CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
+..++|||||||||+|+|.++++++.+ ....+.++..++|.|.++++|.|++.|+++|++++|+|+.++|++|+.+++
T Consensus 24 ~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~ 101 (169)
T PF00535_consen 24 TDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVE 101 (169)
T ss_dssp SGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHH
T ss_pred cCCCEEEEEeccccccccccccccccc--cccccccccccccccccccccccccccceeEEEEeCCCceEcHHHHHHHHH
Confidence 456799999999999999999999976 344677777888999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEeeeecCCCccCcccchh--hhhchHHHHHHHHhCCCccccccceehhhHHHHHHhh
Q psy3650 84 LQQQENLDVVTGTRYVGTGGVYGWDFKRK--LVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLV 149 (435)
Q Consensus 84 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (435)
.+.+++.+++++................. ......................+++.++++++++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 102 ALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp HHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHCH
T ss_pred HHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhhC
Confidence 99888889988887655444322211111 1112222222233344556666778999999999874
No 90
>KOG2977|consensus
Probab=99.74 E-value=2.1e-17 Score=139.94 Aligned_cols=184 Identities=23% Similarity=0.360 Sum_probs=145.9
Q ss_pred CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC--CCC-CcHHH
Q psy3650 4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS--HHP-KFIPE 80 (435)
Q Consensus 4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~--~~~-~~l~~ 80 (435)
.+..+||+||||||+|.|.+++-+++.++..-.+.++....|+|+|+|.-.|+-+++|++++|.|+|.- +++ +.|+.
T Consensus 101 ~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~ 180 (323)
T KOG2977|consen 101 KSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEK 180 (323)
T ss_pred CCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHH
Confidence 346799999999999999999999997777678888889999999999999999999999999999993 332 45555
Q ss_pred HHHHHhc--CCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccC
Q psy3650 81 MIKLQQQ--ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG 156 (435)
Q Consensus 81 ~~~~~~~--~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (435)
.+..... ...++++|+|..... ....+++.+.+.=-.++.+...+-.+.+.|++|||.+|+|.+...+....-.++
T Consensus 181 al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~ 260 (323)
T KOG2977|consen 181 ALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVER 260 (323)
T ss_pred HHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCcccccchhHHHhHHHHHHhhcchhheee
Confidence 5554432 345788898854433 122334445554444555545566778999999999999999999988888999
Q ss_pred chhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650 157 YVFQMEMVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 157 ~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
|.+|.|+...|.+.+..+.++++.+..-...
T Consensus 261 W~fdvEll~La~~~~ipi~ei~v~w~EIdgS 291 (323)
T KOG2977|consen 261 WAFDVELLYLAKRFTIPIKEIPVEWTEIDGS 291 (323)
T ss_pred eeccHHHHHHHHHcCCCcEEeeeEEEEcCCc
Confidence 9999999999999999999999887655543
No 91
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.74 E-value=4.4e-17 Score=156.99 Aligned_cols=174 Identities=17% Similarity=0.219 Sum_probs=118.3
Q ss_pred CCCCC---eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650 3 EGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP 79 (435)
Q Consensus 3 ~~~~~---~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~ 79 (435)
+++|| +|||||||||+|+|.++++++.+++|...++.. +++.|++.|+|.|++.++||||+++|+|+.++|++++
T Consensus 73 ~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~ 150 (439)
T TIGR03111 73 NQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIK 150 (439)
T ss_pred hcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHccCCEEEEECCCCCcChHHHH
Confidence 34555 699999999999999999999888887655543 5678999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCCcEEEEeeeecCCCcc-Ccccchhhhhc--hHHHHHHHHh-------CCCccccccceehhhHHHHHHh
Q psy3650 80 EMIKLQQQ-ENLDVVTGTRYVGTGGVY-GWDFKRKLVSR--GANYLTQLLL-------RPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 80 ~~~~~~~~-~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
.+++.+.+ ++.+++.|......+... ........... .......... ........|++.++||++++++
T Consensus 151 ~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~v 230 (439)
T TIGR03111 151 NMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKT 230 (439)
T ss_pred HHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHh
Confidence 99999975 445666665433211100 00000111111 0111111111 1122334466779999999999
Q ss_pred hccccccCchhhHHHHHHHHh-hcceeEeeee
Q psy3650 149 VSSCVSKGYVFQMEMVIRARQ-YNYTIGEVPI 179 (435)
Q Consensus 149 ~~~~~~~~~~~d~~l~~r~~~-~g~~~~~~~~ 179 (435)
|+.... ...+|+++..|+.. .|+++...|.
T Consensus 231 ggf~~~-~i~ED~~l~~rl~~~~g~kv~~~~~ 261 (439)
T TIGR03111 231 QLYNSE-TVGEDTDMTFQIRELLDGKVYLCEN 261 (439)
T ss_pred CCCCCC-CcCccHHHHHHHHHhcCCeEEECCC
Confidence 775433 45889999999864 5777665543
No 92
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.73 E-value=2.4e-17 Score=146.50 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=113.6
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC---CEEEEEcCCCCCCCCcHHHHH-
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG---NFIIIMDADLSHHPKFIPEMI- 82 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g---d~i~~lD~D~~~~~~~l~~~~- 82 (435)
..|||||||+|+|.+....+. +...+.++..+.|.|+++|+|.|++.|+| |||+++|+|+.++|++|+.++
T Consensus 24 ~~~iivvDn~s~~~~~~~~~~-----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~ 98 (237)
T cd02526 24 VDKVVVVDNSSGNDIELRLRL-----NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLA 98 (237)
T ss_pred CCEEEEEeCCCCccHHHHhhc-----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHH
Confidence 689999999998877655433 22356667778899999999999999988 999999999999999999995
Q ss_pred --HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh-CCCccccccceehhhHHHHHHhhcccccc-Cch
Q psy3650 83 --KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-RPGVSDLTGSFRLYKKQVLENLVSSCVSK-GYV 158 (435)
Q Consensus 83 --~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 158 (435)
....+++...++|+............... .............. ........++..++++++++++|++.... ..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~ 177 (237)
T cd02526 99 YKILSDKNSNIGAVGPRIIDRRTGENSPGVR-KSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDY 177 (237)
T ss_pred HHHhhccCCCeEEEeeeEEcCCCCeecccee-ccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCcc
Confidence 44433444445555544322211100000 00000000000000 00111222445689999999997665433 235
Q ss_pred hhHHHHHHHHhhcceeEeeeeEeeeccc
Q psy3650 159 FQMEMVIRARQYNYTIGEVPISFVDRVV 186 (435)
Q Consensus 159 ~d~~l~~r~~~~g~~~~~~~~~~~~r~~ 186 (435)
+|.+++.|+.+.|+++...|.....+..
T Consensus 178 eD~d~~~r~~~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 178 VDTEWCLRARSKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred chHHHHHHHHHcCCcEEEEcCeEEEecc
Confidence 6999999999999999998877766653
No 93
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.72 E-value=9.2e-17 Score=134.29 Aligned_cols=140 Identities=23% Similarity=0.450 Sum_probs=113.5
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
..++||+|+||||+|.|.+.++++.. ++.++..++|.|++.++|.|++.+.++|++++|+|+.++|++++.+++.
T Consensus 24 ~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~ 98 (166)
T cd04186 24 YPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDA 98 (166)
T ss_pred CCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcEECccHHHHHHHH
Confidence 35699999999999999988887632 4555667789999999999999999999999999999999999999998
Q ss_pred HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCchhhHHH
Q psy3650 85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEM 163 (435)
Q Consensus 85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~l 163 (435)
+.+.+...+++.+ ..+++.++++++++++++.... ..+.+|.++
T Consensus 99 ~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~ 143 (166)
T cd04186 99 AEQDPDVGIVGPK-----------------------------------VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDL 143 (166)
T ss_pred HHhCCCceEEEcc-----------------------------------CceeeEeeeHHHHHHcCCCChhhhccccHHHH
Confidence 7665434444443 5567889999999998654432 236789999
Q ss_pred HHHHHhhcceeEeeeeEeeec
Q psy3650 164 VIRARQYNYTIGEVPISFVDR 184 (435)
Q Consensus 164 ~~r~~~~g~~~~~~~~~~~~r 184 (435)
..|+.+.|+++...|.....+
T Consensus 144 ~~~~~~~g~~i~~~~~~~~~h 164 (166)
T cd04186 144 CLRARLAGYRVLYVPQAVIYH 164 (166)
T ss_pred HHHHHHcCCeEEEccceEEEe
Confidence 999999999998877664443
No 94
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.71 E-value=6.9e-17 Score=143.37 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=114.6
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
++|||||||||+|+|.+++++.. ..+. +.++ ..++.|++.++|.|++.|++|||+++|+|+.++|++|+.+++.+.
T Consensus 28 ~~eiivvdd~s~d~~~~~l~~~~-~~~~--~~v~-~~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 28 PLEIIVVTDGDDEPYLSILSQTV-KYGG--IFVI-TVPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred CCEEEEEeCCCChHHHHHHHhhc-cCCc--EEEE-ecCCCChHHHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence 89999999999999998875432 2333 3333 467889999999999999999999999999999999999999998
Q ss_pred cCCCcEEEEeeeecCCCccCcccchhhhhchHHH---H--HHHHhCCCccccccceehhhHHHHHHhhcccc--------
Q psy3650 87 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY---L--TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-------- 153 (435)
Q Consensus 87 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 153 (435)
+++.++|.|......... ............. . .............|.+.+++++++++.+....
T Consensus 104 ~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~ 180 (235)
T cd06434 104 DPKVGGVGTNQRILRPRD---SKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMG 180 (235)
T ss_pred CCCEeEEcCceEeecCcc---cHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcC
Confidence 677777777654433311 1111111111110 0 01111112333446678999999988643221
Q ss_pred -ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650 154 -SKGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 154 -~~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
.....+|.++..++.+.|+++...+.
T Consensus 181 ~~~~~~eD~~l~~~~~~~g~~~~~~~~ 207 (235)
T cd06434 181 RRLNAGDDRFLTRYVLSHGYKTVYQYT 207 (235)
T ss_pred CCCCcCchHHHHHHHHHCCCeEEEecC
Confidence 23466799999999999999877653
No 95
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.70 E-value=1.3e-16 Score=145.34 Aligned_cols=176 Identities=19% Similarity=0.112 Sum_probs=114.0
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
+.|||||||||+|. +.+++..+.++ ++.++..++|.|.++|+|.|++.| .+|||+++|+|+.++|++++.+++
T Consensus 21 ~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~ 96 (281)
T TIGR01556 21 VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWK 96 (281)
T ss_pred CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 47999999999765 22333333334 577777889999999999999999 589999999999999999999999
Q ss_pred HHhcCC-CcEEEEeeeecCCCccCcccchhhhhch-HHHHHHHHhCCCccccccceehhhHHHHHHhhcccc-ccCchhh
Q psy3650 84 LQQQEN-LDVVTGTRYVGTGGVYGWDFKRKLVSRG-ANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQ 160 (435)
Q Consensus 84 ~~~~~~-~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d 160 (435)
.+++++ ...++|++.....+....+......... .................++..++++++++++|.+.. ...+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~~~D 176 (281)
T TIGR01556 97 LLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFIDHVD 176 (281)
T ss_pred HHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCccHhhcccchH
Confidence 997654 4556666654433211111110000000 000000000001111122235899999999976443 2345679
Q ss_pred HHHHHHHHhhcceeEeeeeEeeeccc
Q psy3650 161 MEMVIRARQYNYTIGEVPISFVDRVV 186 (435)
Q Consensus 161 ~~l~~r~~~~g~~~~~~~~~~~~r~~ 186 (435)
.|+++|+.++|+++...|.....+..
T Consensus 177 ~e~~~R~~~~G~~i~~~~~~~~~H~~ 202 (281)
T TIGR01556 177 TEWSLRAQNYGIPLYIDPDIVLEHRI 202 (281)
T ss_pred HHHHHHHHHCCCEEEEeCCEEEEEec
Confidence 99999999999999998866555543
No 96
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.67 E-value=9.7e-16 Score=134.64 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=106.1
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|...++|||||||+|+|+|.+++++ + .++++ ..+.|++.++|.|+..|+|+||+++|+|+.++|+++++++
T Consensus 24 q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~--~~~~g~~~a~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~ 94 (221)
T cd02522 24 LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVI--SSPKGRARQMNAGAAAARGDWLLFLHADTRLPPDWDAAII 94 (221)
T ss_pred ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEE--eCCcCHHHHHHHHHHhccCCEEEEEcCCCCCChhHHHHHH
Confidence 4445699999999999999988876 2 34443 3467899999999999999999999999999999999998
Q ss_pred HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650 83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME 162 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 162 (435)
....+++..++........... .. .... .... ...............++++++++.+|++.... +.+|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~G~fd~~~-~~ED~d 164 (221)
T cd02522 95 ETLRADGAVAGAFRLRFDDPGP----RL-RLLE--LGAN--LRSRLFGLPYGDQGLFIRRELFEELGGFPELP-LMEDVE 164 (221)
T ss_pred HHhhcCCcEEEEEEeeecCCcc----ch-hhhh--hccc--ceecccCCCcCCceEEEEHHHHHHhCCCCccc-cccHHH
Confidence 7775554433333322222211 11 1000 0000 00011111122335789999999998776666 788999
Q ss_pred HHHHHHhhcceeEe
Q psy3650 163 MVIRARQYNYTIGE 176 (435)
Q Consensus 163 l~~r~~~~g~~~~~ 176 (435)
++.|+.+.|+++..
T Consensus 165 ~~~r~~~~G~~~~~ 178 (221)
T cd02522 165 LVRRLRRRGRPALL 178 (221)
T ss_pred HHHHHHhCCCEEEc
Confidence 99999999998754
No 97
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.67 E-value=8.3e-16 Score=130.75 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=97.1
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc-----CCEEEEEcCCCCCCCCcHHHH
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT-----GNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~-----gd~i~~lD~D~~~~~~~l~~~ 81 (435)
.+|||||||||+|+|.++++++.. .++......|.|++.++|.|+..+. +||++++|+|+.++|+++..+
T Consensus 28 ~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l 102 (183)
T cd06438 28 LYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEEL 102 (183)
T ss_pred ccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHH
Confidence 389999999999999999887632 3444455678899999999999874 899999999999999999999
Q ss_pred HHHHhcCCCcEEEEeeeecCCCccCcccchhhhhch---HHHHH---HHHhCCCccccccceehhhHHHHHHhhcccccc
Q psy3650 82 IKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---ANYLT---QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSK 155 (435)
Q Consensus 82 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (435)
++.+. .+.++|.|.+....... .+........ ..... ....+.. ....|++.+||++++++ ++. ...
T Consensus 103 ~~~~~-~~~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~rr~~l~~-~g~-~~~ 175 (183)
T cd06438 103 NARFA-AGARVVQAYYNSKNPDD---SWITRLYAFAFLVFNRLRPLGRSNLGLS-CQLGGTGMCFPWAVLRQ-APW-AAH 175 (183)
T ss_pred HHHHh-hCCCeeEEEEeeeCCcc---CHHHHHHHHHHHHHHHHHHHHHHHcCCC-eeecCchhhhHHHHHHh-CCC-CCC
Confidence 99995 45688888765443211 2222221111 11111 1111211 22345567999999999 333 234
Q ss_pred CchhhHH
Q psy3650 156 GYVFQME 162 (435)
Q Consensus 156 ~~~~d~~ 162 (435)
...+|++
T Consensus 176 ~l~ED~~ 182 (183)
T cd06438 176 SLTEDLE 182 (183)
T ss_pred CcccccC
Confidence 4455655
No 98
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.67 E-value=6.4e-16 Score=136.24 Aligned_cols=106 Identities=28% Similarity=0.371 Sum_probs=88.9
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q psy3650 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHG 280 (435)
Q Consensus 201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g 280 (435)
++||+||+||++..++++|+++..+ . .|||||||||+|+|.++++++ +.++. .. .+.|.+.++|.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~---~---~eiivvD~gStD~t~~i~~~~-----~~~v~--~~-~~~g~~~~~n~~ 66 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA---V---DEIIVVDSGSTDRTVEIAKEY-----GAKVY--QR-WWDGFGAQRNFA 66 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc---c---CEEEEEeCCCCccHHHHHHHc-----CCEEE--EC-CCCChHHHHHHH
Confidence 4899999999999999999988642 1 399999999999999988753 33443 34 688999999999
Q ss_pred HhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650 281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 281 ~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
++.|++|||+++|+|..++|++++.+...+.+++......
T Consensus 67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (229)
T cd02511 67 LELATNDWVLSLDADERLTPELADEILALLATDDYDGYYV 106 (229)
T ss_pred HHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEE
Confidence 9999999999999999999999999999987655433333
No 99
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.65 E-value=1.1e-15 Score=153.92 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=114.3
Q ss_pred CCCCC---eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCC-CCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650 3 EGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFI 78 (435)
Q Consensus 3 ~~~~~---~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~-n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l 78 (435)
+++|| +||+|+||||+|+|.++++++ .+.++..++ +.||++++|.|+++++||||+++|+|..++|++|
T Consensus 285 ~~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL 357 (852)
T PRK11498 285 GIDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTHEHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFL 357 (852)
T ss_pred hccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCCCcchHHHHHHHHHhCCCCEEEEECCCCCCChHHH
Confidence 35665 899999999999998887764 345554444 4579999999999999999999999999999999
Q ss_pred HHHHHHHh-cCCCcEEEEeeeecCCCccCcccc--hhhhhc--hHH-HHHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650 79 PEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFK--RKLVSR--GAN-YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC 152 (435)
Q Consensus 79 ~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (435)
+.++..+. +++..+|.+.......+....... +..... .+. .........+.....|++.++||++++++|+..
T Consensus 358 ~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd 437 (852)
T PRK11498 358 QMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA 437 (852)
T ss_pred HHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC
Confidence 99998864 456677776543322211110000 000000 011 111111111222234567799999999998765
Q ss_pred cccCchhhHHHHHHHHhhcceeEeee
Q psy3650 153 VSKGYVFQMEMVIRARQYNYTIGEVP 178 (435)
Q Consensus 153 ~~~~~~~d~~l~~r~~~~g~~~~~~~ 178 (435)
.. ...+|.++++|+.++|+++..++
T Consensus 438 ~~-titED~dlslRL~~~Gyrv~yl~ 462 (852)
T PRK11498 438 VE-TVTEDAHTSLRLHRRGYTSAYMR 462 (852)
T ss_pred CC-ccCccHHHHHHHHHcCCEEEEEe
Confidence 43 46789999999999999988764
No 100
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.65 E-value=2.9e-15 Score=123.15 Aligned_cols=153 Identities=24% Similarity=0.359 Sum_probs=123.3
Q ss_pred EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
|+||++|+...+..+++++.+ +.+..++++++||++++.+.+.+.++.... ..+......++.|++.++|.+++.
T Consensus 1 iii~~~~~~~~l~~~l~s~~~---~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~ 75 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLA---QTYPNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKA 75 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHh---CCccceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHH
Confidence 589999999888888888765 444678999999999999999888876542 235555577899999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHH-HhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccce
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKL-QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSF 362 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
+.+|+++++|+|..+.++.+..++.. ..+++.+++.+. ++
T Consensus 76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------------~~ 116 (156)
T cd00761 76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------------GN 116 (156)
T ss_pred hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------------ch
Confidence 99999999999999999999998544 445566666665 56
Q ss_pred eeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEE
Q psy3650 363 RLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIG 400 (435)
Q Consensus 363 ~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~ 400 (435)
++++++.++++++.... ..+.+|.+++.++.+.|+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 117 LLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred heeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence 79999999999765443 333689999999998887653
No 101
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.65 E-value=2.4e-15 Score=152.62 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=116.4
Q ss_pred CCCCC---eEEEEEeCCCCcCh--------------HHHHHHHHHHhCCceEEEccCCCC-CCHHHHHHHHHhhccCCEE
Q psy3650 3 EGNYP---YEIIVIDDGSPDGT--------------LDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNFI 64 (435)
Q Consensus 3 ~~~~~---~EiivvDd~S~d~t--------------~~i~~~~~~~~~~~~i~~~~~~~n-~g~~~a~n~gl~~a~gd~i 64 (435)
+++|| +||+|+||||+|+| .+.+++++++. .+.++..++| .+|++++|.|+++++||||
T Consensus 156 ~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~I 232 (713)
T TIGR03030 156 NMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL---GVNYITRPRNVHAKAGNINNALKHTDGELI 232 (713)
T ss_pred hCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc---CcEEEECCCCCCCChHHHHHHHHhcCCCEE
Confidence 45676 89999999999998 35566776654 4555555555 4789999999999999999
Q ss_pred EEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCccCccc--chhhhhc--h-HHHHHHHHhCCCcccccccee
Q psy3650 65 IIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDF--KRKLVSR--G-ANYLTQLLLRPGVSDLTGSFR 138 (435)
Q Consensus 65 ~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~ 138 (435)
+++|+|..++|++|++++..+++ ++..+|.+.......+...... ....... . ...........+.....|++.
T Consensus 233 l~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~ 312 (713)
T TIGR03030 233 LIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAA 312 (713)
T ss_pred EEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCcee
Confidence 99999999999999999999954 4566666654332222111100 0011100 0 111111111112222345667
Q ss_pred hhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeee
Q psy3650 139 LYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
++||++++++|+... ....+|++++.|+.++|+++...+.
T Consensus 313 ~iRR~al~~iGGf~~-~~vtED~~l~~rL~~~G~~~~y~~~ 352 (713)
T TIGR03030 313 VLRREALDEIGGIAG-ETVTEDAETALKLHRRGWNSAYLDR 352 (713)
T ss_pred EEEHHHHHHcCCCCC-CCcCcHHHHHHHHHHcCCeEEEecc
Confidence 899999999987654 3457899999999999999877653
No 102
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.64 E-value=5.1e-15 Score=142.20 Aligned_cols=176 Identities=16% Similarity=0.135 Sum_probs=119.6
Q ss_pred CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc------cC---CEEEEEcCCC
Q psy3650 2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA------TG---NFIIIMDADL 71 (435)
Q Consensus 2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a------~g---d~i~~lD~D~ 71 (435)
.+++|| +||+|+||+|+|+|.++++++++++|+.++++.+.....||+.++|.|++.+ +| |+++++|+|+
T Consensus 90 ~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~ 169 (504)
T PRK14716 90 ATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAED 169 (504)
T ss_pred HcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCC
Confidence 456776 9999999999999999999999999987766655555678999999999765 45 9999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccch-hhhhchHHHH-HHH--HhCCC-ccccccceehhhHHHHH
Q psy3650 72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-KLVSRGANYL-TQL--LLRPG-VSDLTGSFRLYKKQVLE 146 (435)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~~ 146 (435)
.++|++|..+...+ ++.++|..+......... .+.. .......... ... ....+ .....|...+|+|++++
T Consensus 170 ~v~Pd~Lr~~~~~~--~~~~~VQ~pv~~~~~~~~--~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 170 VIHPLELRLYNYLL--PRHDFVQLPVFSLPRDWG--EWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred CcCccHHHHHHhhc--CCCCEEecceeccCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 99999999876655 345666544322111110 1111 1111111000 000 01111 22234567899999999
Q ss_pred Hh----hcc-ccccCchhhHHHHHHHHhhcceeEeeeeEe
Q psy3650 147 NL----VSS-CVSKGYVFQMEMVIRARQYNYTIGEVPISF 181 (435)
Q Consensus 147 ~~----~~~-~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~ 181 (435)
++ |+. .......+|+++.+|+.+.|+++...|...
T Consensus 246 ~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai 285 (504)
T PRK14716 246 RLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRA 285 (504)
T ss_pred HHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecccc
Confidence 87 222 344567899999999999999988876553
No 103
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=139.48 Aligned_cols=184 Identities=22% Similarity=0.336 Sum_probs=131.0
Q ss_pred CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC---EEEEEcCCCCCCCCcH
Q psy3650 3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADLSHHPKFI 78 (435)
Q Consensus 3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd---~i~~lD~D~~~~~~~l 78 (435)
++.++ .++++|||+|+|++.+.+++.. .| .+.++...+|.|.+++.|.|++.|.++ |+++++.|..++|++|
T Consensus 27 ~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l 102 (305)
T COG1216 27 AQTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLL 102 (305)
T ss_pred cCCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHH
Confidence 34444 5566799999999998888742 23 577778999999999999999999764 9999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEeeeecCCCccCcccch---------hhhhchHHHHHHHHhCCCcc-ccccceehhhHHHHHHh
Q psy3650 79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR---------KLVSRGANYLTQLLLRPGVS-DLTGSFRLYKKQVLENL 148 (435)
Q Consensus 79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (435)
+++++.+.+.+...+.|+.....+......... .................... ...|++.++++++++++
T Consensus 103 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~v 182 (305)
T COG1216 103 EELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV 182 (305)
T ss_pred HHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHh
Confidence 999999988888888887765543221111111 00000000000000000011 24577889999999999
Q ss_pred hccc-cccCchhhHHHHHHHHhhcceeEeeeeEeeecccceee
Q psy3650 149 VSSC-VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQ 190 (435)
Q Consensus 149 ~~~~-~~~~~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~~~ 190 (435)
|+.. ....+.+|.|++.|+++.|+++..+|.....|....+.
T Consensus 183 G~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 183 GGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred CCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 7644 46777889999999999999999999887777655443
No 104
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.62 E-value=5e-15 Score=134.33 Aligned_cols=179 Identities=20% Similarity=0.259 Sum_probs=117.4
Q ss_pred CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEc-cCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK-PRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~-~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
....+|||||||||.+.+.+.++++.++.....++.. ......|.+.|+|.|++.|++|+|+|+|+|..++|+.++.++
T Consensus 31 ~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~ 110 (281)
T PF10111_consen 31 SDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLL 110 (281)
T ss_pred CCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHH
Confidence 3556999999999999998888888876543312221 122346999999999999999999999999999999999999
Q ss_pred H---HHhcCCCcEEEEee-eecCCCccCcccchhhhhchHHHHH-HHHh----CCCccccccceehhhHHHHHHhhcccc
Q psy3650 83 K---LQQQENLDVVTGTR-YVGTGGVYGWDFKRKLVSRGANYLT-QLLL----RPGVSDLTGSFRLYKKQVLENLVSSCV 153 (435)
Q Consensus 83 ~---~~~~~~~~~v~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (435)
+ .+.+.+..++..+. +...... .......-........ .... ........+++.+++|+.+.++|++.+
T Consensus 111 ~~~~~l~~~~~~~~~~p~~yl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE 188 (281)
T PF10111_consen 111 NHVKKLDKNPNAFLVYPCLYLSEEGS--EKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDE 188 (281)
T ss_pred HHHHHHhcCCCceEEEeeeeccchhh--HHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCc
Confidence 9 66555444444443 2222211 0111100000001111 1111 011223345889999999999977765
Q ss_pred cc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650 154 SK-GY-VFQMEMVIRARQYNYTIGEVPISFVDR 184 (435)
Q Consensus 154 ~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r 184 (435)
.. +| .+|.|+..|+.+.|..+...+....++
T Consensus 189 ~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~ 221 (281)
T PF10111_consen 189 RFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYH 221 (281)
T ss_pred cccCCCcchHHHHHHHHHcCCcEecChHHhccc
Confidence 43 44 689999999999999886665544433
No 105
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=4.3e-15 Score=144.63 Aligned_cols=175 Identities=24% Similarity=0.337 Sum_probs=125.7
Q ss_pred CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHh-CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650 2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP 79 (435)
Q Consensus 2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~ 79 (435)
.+++|| +||+||||+|+|+|.+++++..+++ ++.++.+. ...+.|+++++|.|+..++||+|+++|+|..++|++|.
T Consensus 78 ~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~ 156 (439)
T COG1215 78 LSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALR 156 (439)
T ss_pred HhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHH
Confidence 356777 8999999999999999999999988 45455421 26788999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHH-----HHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650 80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT-----QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 154 (435)
Q Consensus 80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (435)
+++..+.+++...+++.+........ ..+............. .........-..|++.+++|++++++|+ ...
T Consensus 157 ~~~~~f~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~-~~~ 234 (439)
T COG1215 157 ELVSPFEDPPVGAVVGTPRIRNRPDP-SNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG-WLE 234 (439)
T ss_pred HHHhhhcCCCeeEEeCCceeeecCCh-hhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC-CCC
Confidence 99999977766656665533322100 0111111111111111 1111112444557788999999999974 445
Q ss_pred cCchhhHHHHHHHHhhcceeEeeee
Q psy3650 155 KGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 155 ~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
....+|.++..++...|+++..++-
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeec
Confidence 6667899999999999999877663
No 106
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.60 E-value=4.1e-15 Score=125.43 Aligned_cols=145 Identities=23% Similarity=0.351 Sum_probs=99.8
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|+..++|||||||+|+|.|.++++++....+. .+.++..+++.|++.++|.|++.+++||++++|+|+.++|++|+.++
T Consensus 22 q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~ 100 (180)
T cd06423 22 LDYPKLEVIVVDDGSTDDTLEILEELAALYIR-RVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLV 100 (180)
T ss_pred CCCCceEEEEEeCCCccchHHHHHHHhccccc-eEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHH
Confidence 44457999999999999999999988765533 35555678899999999999999999999999999999999999996
Q ss_pred HHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHH-----HHHHhCCCccccccceehhhHHHHHHhhcc
Q psy3650 83 KLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL-----TQLLLRPGVSDLTGSFRLYKKQVLENLVSS 151 (435)
Q Consensus 83 ~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (435)
..+.+ ++.+++.+.......... +............ .............+++.+++++++++++++
T Consensus 101 ~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf 172 (180)
T cd06423 101 VPFFADPKVGAVQGRVRVRNGSEN---LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREVGGW 172 (180)
T ss_pred HHhccCCCeeeEeeeEEEecCcCc---ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHHhCCc
Confidence 66544 556666666654433210 1111110000000 000011223445567789999999999753
No 107
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.60 E-value=1.8e-14 Score=123.32 Aligned_cols=139 Identities=18% Similarity=0.184 Sum_probs=91.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccC---CCCCCHHHHHHHHHhhcc-----------CCEEEEEcCCC
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR---KKKLGLGTAYMHGLKYAT-----------GNFIIIMDADL 71 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~---~~n~g~~~a~n~gl~~a~-----------gd~i~~lD~D~ 71 (435)
.++|||||||||+|+|.++++ +....++ +.++.. ..+.|++.|+|.|++.++ +|||+++|+|+
T Consensus 24 ~~~eIivvdd~S~D~t~~~~~-~~~~~~~--v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~ 100 (191)
T cd06436 24 PNFLVLVIDDASDDDTAGIVR-LAITDSR--VHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG 100 (191)
T ss_pred CCeEEEEEECCCCcCHHHHHh-heecCCc--EEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCC
Confidence 569999999999999999998 4333343 444432 357899999999999985 37999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH----HHHHHhCCCccccccceehhhHHHHHH
Q psy3650 72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY----LTQLLLRPGVSDLTGSFRLYKKQVLEN 147 (435)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (435)
.++|++|+.+...+.++..+++.+......... .+...+....+.. ..............|...+||++++++
T Consensus 101 ~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~~ 177 (191)
T cd06436 101 RLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHK---NLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALDG 177 (191)
T ss_pred CcCHhHHHHHHHhhcCCceEEEeeeEEEecCCC---CHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHHH
Confidence 999999999888886566666666543332211 1221221111110 111111112223345678999999999
Q ss_pred hhc
Q psy3650 148 LVS 150 (435)
Q Consensus 148 ~~~ 150 (435)
+|+
T Consensus 178 vgg 180 (191)
T cd06436 178 LIG 180 (191)
T ss_pred hhc
Confidence 944
No 108
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.1e-13 Score=122.19 Aligned_cols=106 Identities=35% Similarity=0.555 Sum_probs=92.1
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
.|++||+||+||++..+..+++++.+ |.+.++|||||||||+|+|.++++++....+ .+......+|.|.+.++|
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~---q~~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 76 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLN---QTYKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGLGAARN 76 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHh---hhhcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCChHHHHH
Confidence 68999999999999999999988876 5555689999999999999999999977642 455555678999999999
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
.|+..+.+++++++|+|.. .++.+..+....
T Consensus 77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred hhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 9999999999999999999 988888855544
No 109
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.53 E-value=3e-13 Score=119.94 Aligned_cols=172 Identities=9% Similarity=0.112 Sum_probs=113.2
Q ss_pred CCC--CeEEEEEeCCCCcChHH----HHHHHHHHhC-CceEEEccCCCCCC-HHHHHHHHHhh--ccCCEEEEEcCCCCC
Q psy3650 4 GNY--PYEIIVIDDGSPDGTLD----AAKQLQSIYG-SEKIVLKPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSH 73 (435)
Q Consensus 4 ~~~--~~EiivvDd~S~d~t~~----i~~~~~~~~~-~~~i~~~~~~~n~g-~~~a~n~gl~~--a~gd~i~~lD~D~~~ 73 (435)
++| .+||+|+||++++.... .+.+++++++ .++++++..++|.| +++++|.++.. +++|||+++|+|..+
T Consensus 29 ~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~ 108 (254)
T cd04191 29 TGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLM 108 (254)
T ss_pred cCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCC
Confidence 455 59999999988765431 2334555554 45677777777766 57788888876 788999999999999
Q ss_pred CCCcHHHHHHHHh-cCCCcEEEEeeeecCCCccCcccchhhhhchHHHH----HH--HHhCCCccccccceehhhHHHHH
Q psy3650 74 HPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL----TQ--LLLRPGVSDLTGSFRLYKKQVLE 146 (435)
Q Consensus 74 ~~~~l~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~ 146 (435)
+|++|..++..+. +++..+|.+........ .+..++........ .. ...........|...++||++++
T Consensus 109 ~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~ 184 (254)
T cd04191 109 SGDTIVRLVRRMEANPRAGIIQTAPKLIGAE----TLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFM 184 (254)
T ss_pred CHHHHHHHHHHHHhCCCEEEEeCCceeECCC----CHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHH
Confidence 9999999999996 56778887765443332 22222221111100 00 00011122233556799999998
Q ss_pred Hhhccc-------c-ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650 147 NLVSSC-------V-SKGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 147 ~~~~~~-------~-~~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
+++..+ . .....+|+++.+++.++|+++...|.
T Consensus 185 ~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 185 EHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD 225 (254)
T ss_pred HhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence 853221 1 33467799999999999999877663
No 110
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.51 E-value=5.5e-13 Score=111.26 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=109.2
Q ss_pred CHHHHHHHHHhh-ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650 272 GLGTAYMHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 350 (435)
Q Consensus 272 g~~~a~n~g~~~-a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
+|..++..+++. +++|+++++|+|..++|++|..|+.++++++.++|++.....+.. +++..+..-+........
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR----GFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc----CHHHHHHHHHHhHHHHHH
Confidence 388999999998 999999999999999999999999999988999999877655433 233333322222222211
Q ss_pred c-CCCccccccceeeecHHHHHHhhhcc-cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccc-cccCCHHHHH
Q psy3650 351 L-RPGVSDLTGSFRLYKKQVLENLVSSC-VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG-ESKLGGTEIF 422 (435)
Q Consensus 351 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~-~s~~~~~~~~ 422 (435)
. ......+.|++++++|+.++++|+.. ....+.+|+.+..++.++|+++...|......... ....+++..+
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~~~~~~s~~~~~ 167 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVPRTLEDSFRDFF 167 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccCccccccHHHHH
Confidence 1 23456688999999999999997654 35677899999999999999999999766544333 2234455433
No 111
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.45 E-value=2e-12 Score=129.72 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=118.3
Q ss_pred CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc-------c--CCEEEEEcCCCC
Q psy3650 3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-------T--GNFIIIMDADLS 72 (435)
Q Consensus 3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a-------~--gd~i~~lD~D~~ 72 (435)
+++|| +||++++|++++.|.++++++++++|+.++++.+...|.||+.++|.|+..+ . .+.+++.|+|+.
T Consensus 88 ~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~ 167 (727)
T PRK11234 88 TLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV 167 (727)
T ss_pred hCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC
Confidence 46777 9999999999999999999999999987766666666889999999999987 3 367888999999
Q ss_pred CCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccceehh-hH--H
Q psy3650 73 HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGSFRLY-KK--Q 143 (435)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~--~ 143 (435)
++|++|. +++.+.++. ++|.++......+. ..+......-.+. .......+..+ ...|..++| |+ +
T Consensus 168 v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~~--~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~ 242 (727)
T PRK11234 168 ISPMELR-LFNYLVERK-DLIQIPVYPFEREW--THFTSGTYIDEFAELHGKDVPVREALAGQV-PSAGVGTCFSRRAVT 242 (727)
T ss_pred CChhHHH-HHHhhcCCC-CeEeecccCCCccH--HHHHHHHHHHHHHHHhhhhhHHHHHcCCCc-ccCCceEEEecccHH
Confidence 9999998 667775444 88887644111110 0111111101111 11112222222 334445788 55 3
Q ss_pred HHHHhh-c-cccccCchhhHHHHHHHHhhcceeEeeeeEe
Q psy3650 144 VLENLV-S-SCVSKGYVFQMEMVIRARQYNYTIGEVPISF 181 (435)
Q Consensus 144 ~~~~~~-~-~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~ 181 (435)
++.++| + ........+|+++..|+...|+++...|...
T Consensus 243 al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v 282 (727)
T PRK11234 243 ALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPV 282 (727)
T ss_pred HHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEccccc
Confidence 566664 2 3456667889999999999999998877443
No 112
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.44 E-value=1.5e-13 Score=122.29 Aligned_cols=142 Identities=16% Similarity=0.065 Sum_probs=94.5
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHH-------HHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT-------AYMHGLKYATGNFIIIMDADLSHHPKFIP 79 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~-------a~n~gl~~a~gd~i~~lD~D~~~~~~~l~ 79 (435)
.+|||||||||+| .|.|+.. ++|.|+..|+||||+++|+|+.++|++|+
T Consensus 37 ~~evivv~Dgs~d------------------------~~~gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~ 92 (244)
T cd04190 37 KIVVCVIFDGAIK------------------------KNRGKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIV 92 (244)
T ss_pred EEEEEEEeCCccc------------------------ccCcchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHH
Confidence 4899999999999 2334432 67888999999999999999999999999
Q ss_pred HHHHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhc------hHHHHHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650 80 EMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR------GANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC 152 (435)
Q Consensus 80 ~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (435)
.+++.+.. +.+.+|.|......... .+....... ..........+ ......|.+.+||++++++++...
T Consensus 93 ~l~~~~~~~p~vg~v~g~~~~~~~~~---~~~~~~q~~ey~~~~~~~~~~~s~~g-~~~~~~G~~~~~R~~~l~~~~~~~ 168 (244)
T cd04190 93 QLYKAMDKDPEIGGVCGEIHPMGKKQ---GPLVMYQVFEYAISHWLDKAFESVFG-FVTCLPGCFSMYRIEALKGDNGGK 168 (244)
T ss_pred HHHHHHHhCCCEEEEEeeeEEcCCcc---hhHHHhHheehhhhhhhcccHHHcCC-ceEECCCceEEEEehhhcCCcccc
Confidence 99999954 55666777654432211 111111111 00111111112 233345678899999999885432
Q ss_pred cc-------------------cCchhhHHHHHHHHhhcceeEe
Q psy3650 153 VS-------------------KGYVFQMEMVIRARQYNYTIGE 176 (435)
Q Consensus 153 ~~-------------------~~~~~d~~l~~r~~~~g~~~~~ 176 (435)
.. ....+|.++..++.+.|+++..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 169 GPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred ccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 21 1246799999999999998766
No 113
>KOG3737|consensus
Probab=99.41 E-value=8.4e-13 Score=116.76 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=147.3
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCc-chHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLGLG 274 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~ 274 (435)
.-|..||||+.+||.-. -+++++.+.++.+... -|||+|||.|+. ...+.+.++...+.. .+.++.+++.-|.-
T Consensus 153 ~Lpt~SVviVFHNEGws--~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~REGLI 229 (603)
T KOG3737|consen 153 NLPTSSVVIVFHNEGWS--TLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNERREGLI 229 (603)
T ss_pred cCCcceEEEEEecCccH--HHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecchhhhhh
Confidence 46889999999999753 3455555555554433 499999999986 567889999888876 78888899999999
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceec-cchh-------HHHHH-HHH--
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-WDFK-------RKLVS-RGA-- 343 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-------~~~~~-~~~-- 343 (435)
.|+..|...|.|++++|+|+.+.+..+|+..++.++.++...+.+...-.-+...+. .+.+ +..+. .+.
T Consensus 230 ~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyK 309 (603)
T KOG3737|consen 230 QARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYK 309 (603)
T ss_pred hhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheec
Confidence 999999999999999999999999999999999999764433333222111111100 0000 00000 000
Q ss_pred -----HHH-HHHhc-CCCc--cccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650 344 -----NYL-TQLLL-RPGV--SDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 344 -----~~~-~~~~~-~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~ 412 (435)
..- ..+.. ..++ +...||..++.|+.|.++|.+...-- + ++.+||..++-+.|-+|.++|-+.+.|..+
T Consensus 310 e~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR 389 (603)
T KOG3737|consen 310 EVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYR 389 (603)
T ss_pred cCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhh
Confidence 000 01111 1122 22467788999999999987665532 3 378999999999999999999998877655
No 114
>KOG3738|consensus
Probab=99.38 E-value=8.7e-13 Score=116.96 Aligned_cols=205 Identities=16% Similarity=0.167 Sum_probs=142.9
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT 275 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~ 275 (435)
..|..||||..+||+.. .+|+.+.+.++++..+ .|||+|||+|.|.+. .+.+ .+.+ +++++.+++.-|.-.
T Consensus 122 dlp~TsviITfHNEARS--~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped--~~~L-~ri~--kvr~LRN~~ReGLir 194 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARS--TLLRTVVSVLNRSPEHLIHEIILVDDFSQDPED--GKLL-KRIP--KVRVLRNNEREGLIR 194 (559)
T ss_pred CCCCceEEEEeccHHHH--HHHHHHHHHHcCChHHhhheeEEecCCCCChHH--HHHH-hhhh--eeeeecccchhhhhh
Confidence 46889999999999864 3566666667765544 599999999998653 2222 2223 678888999999999
Q ss_pred HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCce-------------eccchhHHHHHHH
Q psy3650 276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-------------YGWDFKRKLVSRG 342 (435)
Q Consensus 276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~ 342 (435)
.++.|...|++.++.|+|+.+....+||+.|+..++++..-+|....-.-+-.. +.|+..-++-..-
T Consensus 195 SRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~ 274 (559)
T KOG3738|consen 195 SRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQ 274 (559)
T ss_pred hhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEEEEEehhcC
Confidence 999999999999999999999999999999999998755555544332222111 1111111111111
Q ss_pred HHHHHHH---hcCCCccccccceeeecHHHHHHhhhccc-Cccc-chhhHHHHHHHHCCCcEEEeeeEEeec
Q psy3650 343 ANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDR 409 (435)
Q Consensus 343 ~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~-~~D~el~lr~~~~G~~i~~~p~~~~~~ 409 (435)
...-.++ ......+...||..+++++.|.++|.+.. .+-+ +|..||..|.-..|..++-+|-+.+.|
T Consensus 275 ~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGH 346 (559)
T KOG3738|consen 275 LEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGH 346 (559)
T ss_pred HHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhh
Confidence 1111111 11223345688899999999999976543 2333 378899999999999999999887755
No 115
>KOG3736|consensus
Probab=99.37 E-value=6e-13 Score=127.15 Aligned_cols=214 Identities=16% Similarity=0.166 Sum_probs=150.9
Q ss_pred CCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcch-HHHHHHHHHHhCCceEEEecCCCCCC
Q psy3650 196 DSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLG 272 (435)
Q Consensus 196 ~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~~~~~~~n~g 272 (435)
....|..||||+.+||...+ +++++.+.++.+... -|||+|||.|+... ...++++.+.+.. +.++..++..|
T Consensus 138 ~~~Lp~~Svii~f~nE~~s~--llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~--v~i~r~~~R~G 213 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHNEAWST--LLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK--VRILRTKKREG 213 (578)
T ss_pred ccccCCCceEEEEecCCCcc--hhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc--eeEEeecchhh
Confidence 34468999999999998754 344444444443322 59999999999754 6668888877765 66666788999
Q ss_pred HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceec-------------cchhHHHH
Q psy3650 273 LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-------------WDFKRKLV 339 (435)
Q Consensus 273 ~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~ 339 (435)
.-.|+..|...|+||+++|+|+-+.....|++.+++.+..+...+|+...-.-+...+. |....++.
T Consensus 214 LIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~ 293 (578)
T KOG3736|consen 214 LIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWE 293 (578)
T ss_pred hHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceeeeecceeEEec
Confidence 99999999999999999999999999999999999999876766666544333222111 11111110
Q ss_pred HHHHHHHHHH---hcCCCccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650 340 SRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPISFVDRVYGE 413 (435)
Q Consensus 340 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~~~~~~~~~~ 413 (435)
.--.....+. .....-+...||.++++|+.|.++|.++.. +-++ |..||.+|.-..|.++.-+|=+.+.|...+
T Consensus 294 ~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifRk 372 (578)
T KOG3736|consen 294 RLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFRK 372 (578)
T ss_pred cCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceeeeeec
Confidence 0000011111 111222334777889999999999887654 3443 899999999999999999999888876554
No 116
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.35 E-value=4.1e-12 Score=111.99 Aligned_cols=80 Identities=31% Similarity=0.443 Sum_probs=68.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
.|||||||||+|+|.++++++ ..+++. . .+.|.+.++|.|+..|++|||+++|+|+.++|++++.+.+.+++
T Consensus 27 ~eiivvD~gStD~t~~i~~~~-----~~~v~~--~-~~~g~~~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 27 DEIIVVDSGSTDRTVEIAKEY-----GAKVYQ--R-WWDGFGAQRNFALELATNDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred CEEEEEeCCCCccHHHHHHHc-----CCEEEE--C-CCCChHHHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 599999999999999999854 334543 3 78899999999999999999999999999999999999999976
Q ss_pred CCCcEEEE
Q psy3650 88 ENLDVVTG 95 (435)
Q Consensus 88 ~~~~~v~g 95 (435)
++......
T Consensus 99 ~~~~~~~~ 106 (229)
T cd02511 99 DDYDGYYV 106 (229)
T ss_pred CCCcEEEE
Confidence 65433333
No 117
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.31 E-value=3e-11 Score=99.01 Aligned_cols=127 Identities=24% Similarity=0.360 Sum_probs=99.4
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 85 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 85 (435)
.++|++|+||+|++.+.+.+.++.+.. ..+..+...++.|.+.++|.|+..+.+|+++++|+|..++|++++.++...
T Consensus 25 ~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 25 PNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred cceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHH
Confidence 469999999999999999999887642 234444577889999999999999999999999999999999999985444
Q ss_pred -hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccC-chhhHHH
Q psy3650 86 -QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG-YVFQMEM 163 (435)
Q Consensus 86 -~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~l 163 (435)
.+++.+++.+. +..++++++++.++....... +.+|.++
T Consensus 103 ~~~~~~~~v~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ed~~~ 143 (156)
T cd00761 103 LADPEADAVGGP---------------------------------------GNLLFRRELLEEIGGFDEALLSGEEDDDF 143 (156)
T ss_pred hcCCCceEEecc---------------------------------------chheeeHHHHHHhCCcchHhcCCcchHHH
Confidence 33556666555 567899999999865543333 3667888
Q ss_pred HHHHHhhcce
Q psy3650 164 VIRARQYNYT 173 (435)
Q Consensus 164 ~~r~~~~g~~ 173 (435)
..+..+.|..
T Consensus 144 ~~~~~~~g~~ 153 (156)
T cd00761 144 LLRLLRGGKV 153 (156)
T ss_pred HHHHHhhccc
Confidence 8887776654
No 118
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.28 E-value=1.5e-10 Score=114.74 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=114.3
Q ss_pred CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc-------cCC--EEEEEcCCC
Q psy3650 2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-------TGN--FIIIMDADL 71 (435)
Q Consensus 2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a-------~gd--~i~~lD~D~ 71 (435)
.+.+|| +||+|+.+..+++|.+.+++++..+|+.++++.++..++||+.|+|.|+..+ .++ .|++.|+|+
T Consensus 95 ~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd 174 (703)
T PRK15489 95 ATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSED 174 (703)
T ss_pred hcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCC
Confidence 356787 9999954334448899999998888877777777777799999999999886 333 499999999
Q ss_pred CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHH------HHHHhCCCccccccceehhhHHHH
Q psy3650 72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL------TQLLLRPGVSDLTGSFRLYKKQVL 145 (435)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 145 (435)
.++|+.|..+ +.+.. +.+++.++......+ ...|......-.+..+ .....+..+ ...|...+|+++++
T Consensus 175 ~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~~--~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~i-pl~Gv~~~frr~aL 249 (703)
T PRK15489 175 VLHPLELKYF-NYLLP-RKDLVQLPVLSLERK--WYEWVAGTYMDEFAEWHQKDLVVRESLTGTV-PSAGVGTCFSRRAL 249 (703)
T ss_pred CCChhHHHHH-HhhcC-CcceeeeeeccCCCc--cccHHHHHHHHHHHHHhhhHHHHHHHcCCce-eccCcceeeeHHHH
Confidence 9999999766 55533 347777753222111 1123333221111111 111222233 23444679999999
Q ss_pred HHh---hc--cccccCchhhHHHHHHHHhhcceeEee
Q psy3650 146 ENL---VS--SCVSKGYVFQMEMVIRARQYNYTIGEV 177 (435)
Q Consensus 146 ~~~---~~--~~~~~~~~~d~~l~~r~~~~g~~~~~~ 177 (435)
+.+ ++ ........+|+|+.+|+.+.|++....
T Consensus 250 ~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~ 286 (703)
T PRK15489 250 LALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFV 286 (703)
T ss_pred HHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEE
Confidence 876 22 233456688999999999999998773
No 119
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.19 E-value=3.7e-10 Score=112.94 Aligned_cols=169 Identities=10% Similarity=0.155 Sum_probs=112.4
Q ss_pred CeEEEEEeCCCCcChHHH----HHHHHHHhC-CceEEEccCCCCCC-HHHHHHHHHhh--ccCCEEEEEcCCCCCCCCcH
Q psy3650 7 PYEIIVIDDGSPDGTLDA----AKQLQSIYG-SEKIVLKPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFI 78 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i----~~~~~~~~~-~~~i~~~~~~~n~g-~~~a~n~gl~~--a~gd~i~~lD~D~~~~~~~l 78 (435)
++|++|+||+++|++... .++++++++ ..++.+.+.+.|.| |++++|.+++. +++||++++|+|..++++++
T Consensus 159 ~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L 238 (691)
T PRK05454 159 HFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTL 238 (691)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHH
Confidence 499999999999987643 345666653 34677765555554 78889999988 56799999999999999999
Q ss_pred HHHHHHHh-cCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHH-----h-CCCccccccceehhhHHHHHHhhcc
Q psy3650 79 PEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL-----L-RPGVSDLTGSFRLYKKQVLENLVSS 151 (435)
Q Consensus 79 ~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (435)
.+++..++ ++++.+|.+........ .+..+............. . ..+.....|...++|++++.+.++-
T Consensus 239 ~~lv~~m~~dP~vGlVQt~~~~~n~~----slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~gl 314 (691)
T PRK05454 239 VRLVRLMEANPRAGLIQTLPVAVGAD----TLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGL 314 (691)
T ss_pred HHHHHHHhhCcCEEEEeCCccCcCCC----CHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCC
Confidence 99999996 46778887654433322 222222221111110000 0 0011223345568999999876321
Q ss_pred -------c-cccCchhhHHHHHHHHhhcceeEeeee
Q psy3650 152 -------C-VSKGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 152 -------~-~~~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
. ......+|++...++.+.|+++..+|.
T Consensus 315 p~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd 350 (691)
T PRK05454 315 PPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPD 350 (691)
T ss_pred ccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence 1 234567799999999999999887764
No 120
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.17 E-value=3.1e-10 Score=97.32 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=94.5
Q ss_pred EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHH---HHHHHHHHHhcCCCccccccceee
Q psy3650 288 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS---RGANYLTQLLLRPGVSDLTGSFRL 364 (435)
Q Consensus 288 ~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
||+++|+|+.++|+.+.+++..+++++++++.+.....+.+.. ......... ...........+ ......|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSL-LTRLQDFEYAISHGLSRLSQSSLG-RPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCCh-hheeehhhhhhhhhhhHHHHHhcC-CCccccCccee
Confidence 6899999999999999999999987789999998877543211 001111111 011111111222 23346788899
Q ss_pred ecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHH
Q psy3650 365 YKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKA 427 (435)
Q Consensus 365 ~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~ 427 (435)
+++++++++++........||.|++.|+.++|+++.++|....++....+-. -+++..|+...
T Consensus 79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 142 (193)
T PF13632_consen 79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARG 142 (193)
T ss_pred eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhh
Confidence 9999999997655456667999999999999999999998865554333322 35667777666
No 121
>KOG2547|consensus
Probab=99.15 E-value=1.9e-10 Score=101.68 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=141.3
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LG 274 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~ 274 (435)
.-|.|||+.|.-.-++++-.-+ +.++...|+.+|++++-+.++|+..+.++++.+++|++...++-..+..| |-
T Consensus 83 ~LPgVSiikPl~G~d~nl~~Nl---esffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDPNLYHNL---ESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCceEEeecccCCchhHHhH---HHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence 4689999999999988765544 44555678899999999999999999999999999999888777766777 44
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHH-HHHHHHHHhcC
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR-GANYLTQLLLR 352 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 352 (435)
.++--|.+.|+.|+|++.|+|..+.||.+..|...+.+ .+.+.|++-+...+.+... ..+-.. +...-.+..+.
T Consensus 160 nN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~----atle~~~fgTsh~r~yl~ 235 (431)
T KOG2547|consen 160 NNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFD----ATLEQVYFGTSHPRIYLS 235 (431)
T ss_pred hccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccch----hhhhheeeccCCceEEEc
Confidence 67778889999999999999999999999999998863 4567888777665433111 111110 00000111111
Q ss_pred CCc---cccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650 353 PGV---SDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 353 ~~~---~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
.++ .-.+|...++|++++.+-|+.... .-..+|.-+.-.+...|+|-....
T Consensus 236 ~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist 290 (431)
T KOG2547|consen 236 GNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAIST 290 (431)
T ss_pred cccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 111 112444468999999998765433 333577777777888888865443
No 122
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.12 E-value=2.9e-10 Score=98.24 Aligned_cols=178 Identities=16% Similarity=0.312 Sum_probs=93.4
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL 281 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~ 281 (435)
||||++ +|.+..+++++++|.+. ..++.+.|-+++ .....+.+.+.|.|+
T Consensus 1 isiI~c-~n~~~~~~~~~~~i~~~---~~~~~~~i~i~~--------------------------~~~~~s~~~~yN~a~ 50 (217)
T PF13712_consen 1 ISIIIC-VNDEELYEECLRSIKRL---IGPPGELIEIDN--------------------------VRNAKSMAAAYNEAM 50 (217)
T ss_dssp EEEEEE-ES-HHHHHHHHHHHHHT---T--TEEEEEEE---------------------------SSS-S-TTTHHHHHG
T ss_pred CEEEEE-ECCHHHHHHHHHHHHhh---CCCCceEEEEec--------------------------cCCCcCHHHHHHHHH
Confidence 355554 45555577788777663 234455554432 223457789999999
Q ss_pred hhccCCEEEEEeCCCC-CCCccHHHHHHHH-hcCCCceEE--eeeEECCCce-eccc--------hhHHHHHHHHHHHHH
Q psy3650 282 KYATGNFIIIMDADLS-HHPKFIPEMIKLQ-QQENLDVVT--GTRYVGTGGV-YGWD--------FKRKLVSRGANYLTQ 348 (435)
Q Consensus 282 ~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~-~~~~~~~v~--~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~ 348 (435)
+.|+++|++|++.|.. .+++++..++..+ ++++.+++. |....+..+. +..+ ..+............
T Consensus 51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~ 130 (217)
T PF13712_consen 51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNKVGKVREYGRIMHGHGPNSAGE 130 (217)
T ss_dssp GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEEEEETTEEEE----E-------
T ss_pred HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCccccccccccccccccccccccccccccc
Confidence 9999999999999997 5789999999999 555554443 4443332221 0000 001011111111111
Q ss_pred H-------hcCCCccccccceeeecHHHHHHhhhcccC--ccc-chhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650 349 L-------LLRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGY-VFQMEMVIRARQYNYTIGEVPISFVDRVYGE 413 (435)
Q Consensus 349 ~-------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~ 413 (435)
. ....++..+-|.+++.+++++ ++.+. .+| ++|+++|++++++|+++...|....|...|.
T Consensus 131 ~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~~~~~H~s~g~ 201 (217)
T PF13712_consen 131 VRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPPPWCIHFSGGS 201 (217)
T ss_dssp ------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE-----EE-S---
T ss_pred ccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecCceEEEcCCCC
Confidence 1 123445567899999999999 23333 566 5899999999999999977776555555444
No 123
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=3.4e-10 Score=99.70 Aligned_cols=80 Identities=34% Similarity=0.552 Sum_probs=68.1
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
|+..++|||||||||+|+|.++++++.+.. .++.......|.|.+.++|.|+..+.|++++++|+|+. .+..+..+.
T Consensus 28 q~~~~~eiivvddgs~d~t~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~ 104 (291)
T COG0463 28 QTYKDFEIIVVDDGSTDGTTEIAIEYGAKD--VRVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQ-HPPELIPLV 104 (291)
T ss_pred hhhcceEEEEEeCCCCCChHHHHHHHhhhc--ceEEEeecccCCChHHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHH
Confidence 444448999999999999999999998754 24555556889999999999999999999999999999 999888855
Q ss_pred HHH
Q psy3650 83 KLQ 85 (435)
Q Consensus 83 ~~~ 85 (435)
...
T Consensus 105 ~~~ 107 (291)
T COG0463 105 AAG 107 (291)
T ss_pred HHh
Confidence 554
No 124
>KOG3738|consensus
Probab=99.08 E-value=9.5e-11 Score=104.23 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=117.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
-|||+|||+|+|.+. .+.+.+ .| +|.++++.++.|.-.++++|...|++.++.|||+.+....+||+.|++.+.+
T Consensus 157 ~EiILVDD~S~Dped--~~~L~r-i~--kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvae 231 (559)
T KOG3738|consen 157 HEIILVDDFSQDPED--GKLLKR-IP--KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAE 231 (559)
T ss_pred heeEEecCCCCChHH--HHHHhh-hh--eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhh
Confidence 799999999998654 333322 23 6788889999999999999999999999999999999999999999999966
Q ss_pred CCCcEEEEee---------------eecCCCccCcccchhhhhchHHHHHHH---HhCCCccccccceehhhHHHHHHhh
Q psy3650 88 ENLDVVTGTR---------------YVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLV 149 (435)
Q Consensus 88 ~~~~~v~g~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (435)
+...+|..-- ..+++ +.|...-++-......-... .....-+...||.++++++.|+.+|
T Consensus 232 d~trvVsPiiDvIn~dnf~Y~~asadLrGG--FDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LG 309 (559)
T KOG3738|consen 232 DTTRVVSPIIDVINLDNFSYVGASADLRGG--FDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELG 309 (559)
T ss_pred cccceeecccccccccccccccchhhhcCC--cceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhc
Confidence 5544442211 11111 12221111111100111111 1122335557899999999999997
Q ss_pred cccc-ccCc-hhhHHHHHHHHhhcceeEeeeeEeeecccce
Q psy3650 150 SSCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDRVVFT 188 (435)
Q Consensus 150 ~~~~-~~~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~ 188 (435)
.... ..-| ++-.|+.+|...+|..+.-+|...+.+.+.+
T Consensus 310 kyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHVFRk 350 (559)
T KOG3738|consen 310 KYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHVFRK 350 (559)
T ss_pred ccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhhhhc
Confidence 6543 3333 3348888899999999998888766666544
No 125
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.07 E-value=1.1e-09 Score=91.41 Aligned_cols=129 Identities=19% Similarity=0.225 Sum_probs=96.0
Q ss_pred CHHHHHHHHHhh-ccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHH
Q psy3650 47 GLGTAYMHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 125 (435)
Q Consensus 47 g~~~a~n~gl~~-a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (435)
+|..++..|++. |++|+++++|+|..++|++|..++..+++++.++|.+......... +...+..-........+
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG----FWSRLEAAFFNFLPGVL 92 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC----HHHHHHHHHHhHHHHHH
Confidence 688999999998 9999999999999999999999999998888999998766544332 22222111111111111
Q ss_pred h-CCCccccccceehhhHHHHHHhhcccc-ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650 126 L-RPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~r~~~~g~~~~~~~~ 179 (435)
. ........|+++++||+.++++|+... .....+|+.+..++.+.|+++...+.
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~ 148 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPY 148 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcch
Confidence 1 224455668889999999999966543 55668899999999999999877663
No 126
>KOG3736|consensus
Probab=98.99 E-value=4.4e-10 Score=107.78 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=123.4
Q ss_pred eEEEEEeCCCCcCh-HHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 8 YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 8 ~EiivvDd~S~d~t-~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
-|||+|||+|+..- ...++++.+.++. +++++...+.|.-.|+..|...|+||.++|+|+-.....+||+.+++.+.
T Consensus 175 kEIiLVdD~S~~~~l~~~Ld~y~k~~~~--v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~ 252 (578)
T KOG3736|consen 175 KEIILVDDFSDRDHLKDKLEEYVKRFSK--VRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIA 252 (578)
T ss_pred EEEEEeecCcchhhhhhhhHHHHhhhcc--eeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhh
Confidence 69999999997764 4557777776654 66667888999999999999999999999999999999999999999997
Q ss_pred cCCCcEEEEeeeecCCC-------------ccCcccchhhhhchHHHHHHH---HhCCCccccccceehhhHHHHHHhhc
Q psy3650 87 QENLDVVTGTRYVGTGG-------------VYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVS 150 (435)
Q Consensus 87 ~~~~~~v~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (435)
++...+|......-... .+.|...-+....-....... ......+...||.++++|+.|..+|.
T Consensus 253 ~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~ 332 (578)
T KOG3736|consen 253 EDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGS 332 (578)
T ss_pred hcCceeecceEEeecCcCceecccCccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccC
Confidence 66655543321111111 111211111100000111111 11223455568899999999999976
Q ss_pred ccc-ccCc-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650 151 SCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 151 ~~~-~~~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
... ...| ++..||.+|+..+|.++..+|...+.+.+.
T Consensus 333 yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifR 371 (578)
T KOG3736|consen 333 YDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFR 371 (578)
T ss_pred ccccccccChhhceeeEEEeccCCeEEecCccceeeeee
Confidence 543 3333 345999999999999999999887777754
No 127
>KOG3737|consensus
Probab=98.92 E-value=2.4e-09 Score=95.24 Aligned_cols=179 Identities=18% Similarity=0.178 Sum_probs=122.3
Q ss_pred eEEEEEeCCCCcC-hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 8 YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 8 ~EiivvDd~S~d~-t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
-|||+|||-|+.. ..+-+.++...+.. .|++++++++-|.-.|+..|.+.|.|+.++|||+.+.+.-+|+..+++++.
T Consensus 188 ~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~ 266 (603)
T KOG3737|consen 188 AEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPIS 266 (603)
T ss_pred heEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccc
Confidence 7999999999654 45777777776644 688888999999999999999999999999999999999999999999996
Q ss_pred cCCCcEEEEe-----------eeecCCCc------cCcccchhh---hhchHHHHHHHHhCCCccccccceehhhHHHHH
Q psy3650 87 QENLDVVTGT-----------RYVGTGGV------YGWDFKRKL---VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 146 (435)
Q Consensus 87 ~~~~~~v~g~-----------~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (435)
.+...+.+.- +...+.++ +.|....+- ..+..............+...||.+++.|+.|.
T Consensus 267 rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ 346 (603)
T KOG3737|consen 267 RDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFF 346 (603)
T ss_pred cCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHH
Confidence 5543332211 01111111 111111111 111111111111233445557889999999999
Q ss_pred Hhhcccc-ccCch-hhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650 147 NLVSSCV-SKGYV-FQMEMVIRARQYNYTIGEVPISFVDRVVF 187 (435)
Q Consensus 147 ~~~~~~~-~~~~~-~d~~l~~r~~~~g~~~~~~~~~~~~r~~~ 187 (435)
++|.... ..-|+ +-+|+.++..++|.++..+|...+.+.+.
T Consensus 347 ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR 389 (603)
T KOG3737|consen 347 ELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYR 389 (603)
T ss_pred HhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhh
Confidence 9966543 33343 34888889999999999999886666654
No 128
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.91 E-value=1.1e-08 Score=92.96 Aligned_cols=186 Identities=18% Similarity=0.207 Sum_probs=115.2
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC----CC-------
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----KK------- 270 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~----~n------- 270 (435)
+.|+|++||+.+.++++|++|.++. ....+.+|+|.+||+.+++.+.++.+.. .+.++.+. .|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~-p~~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~~~~~~ 75 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYR-PSAEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVNPPHKF 75 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhcc-ccCCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccCccccc
Confidence 5799999999999999999997742 1445789999999999888887777631 22222221 12
Q ss_pred ---CCHHH----HHHHHHhhccCCEEEEEeCCCCCCCcc---HHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650 271 ---LGLGT----AYMHGLKYATGNFIIIMDADLSHHPKF---IPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS 340 (435)
Q Consensus 271 ---~g~~~----a~n~g~~~a~~d~v~~~d~D~~~~~~~---l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
.+.+. |+|.++...++++++++++|..+.|++ +++++..+++.+.-.+++.-. .++... .....
T Consensus 76 ~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-dnG~~~---~~~~~-- 149 (334)
T cd02514 76 QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-DNGKEH---FVDDT-- 149 (334)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-cCCccc---ccCCC--
Confidence 12233 889999888899999999999999994 466666666544333333222 111100 00000
Q ss_pred HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHH--HHHCCCcEEEeeeEEeeccc
Q psy3650 341 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR--ARQYNYTIGEVPISFVDRVY 411 (435)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr--~~~~G~~i~~~p~~~~~~~~ 411 (435)
....+...+ ..|...|+.|+.++++.. .... .|+|+.+| .+++|-......++...+.+
T Consensus 150 ------~~~lyrs~f--f~glGWml~r~~W~e~~~-~wp~---~~WD~w~R~~~~rkgr~cirPeisRt~~~g 210 (334)
T cd02514 150 ------PSLLYRTDF--FPGLGWMLTRKLWKELEP-KWPK---AFWDDWMRLPEQRKGRECIRPEISRTYHFG 210 (334)
T ss_pred ------cceEEEecC--CCchHHHHHHHHHHHhCC-CCCC---CChHHhhcchhhhcCCccccCCcchheecc
Confidence 011112222 122225889999999822 2222 26677776 57777766666666666543
No 129
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.67 E-value=1.3e-06 Score=74.21 Aligned_cols=153 Identities=13% Similarity=0.121 Sum_probs=105.8
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
.+++||||.+++.+.|..++..+...+......+.|+|+.-- ....+.+|..+|.
T Consensus 2 ~~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~-------------------------~~~~FNR~~llNv 56 (219)
T cd00899 2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------GNFRFNRAKLLNV 56 (219)
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEec-------------------------CCccchhhhhhhH
Confidence 479999999999999999999999888877777788777411 1123466788888
Q ss_pred HHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCc
Q psy3650 280 GLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGV 355 (435)
Q Consensus 280 g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (435)
|+..|. .+++++-|-|..+..+.+. . .+.+.+.-+..+.- ......++
T Consensus 57 G~~~a~k~~~~dc~i~hDVDllP~~~~~~--y-~~~~~p~H~s~~~~-------------------------~~~~~lpy 108 (219)
T cd00899 57 GFLEALKDGDWDCFIFHDVDLLPENDRNL--Y-GCEEGPRHLSVPLD-------------------------KFHYKLPY 108 (219)
T ss_pred HHHHHhhcCCccEEEEecccccccCcccc--c-cCCCCCeEEEEeec-------------------------ccccccCc
Confidence 887763 4788888888876666533 1 22222211111110 01111222
Q ss_pred cccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeeeE
Q psy3650 356 SDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~~ 405 (435)
...-||.++++++.|.+++|+++. .+++ ||.||..|+..+|+++..++..
T Consensus 109 ~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 109 KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCc
Confidence 344678899999999999776543 4665 9999999999999999988853
No 130
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.64 E-value=7.3e-07 Score=85.78 Aligned_cols=228 Identities=16% Similarity=0.186 Sum_probs=139.3
Q ss_pred cceEEEEeccCCCC-ChHHHHHHHHHHhhcCCCCeEEEEEeCC------CCcchHHHHHHHHHH----------------
Q psy3650 200 NKYTVLLPTYNEKE-NLPIIVYLITKYMDEGNYPYEIIVIDDG------SPDGTLDAAKQLQSI---------------- 256 (435)
Q Consensus 200 ~~isivip~~n~~~-~l~~~l~~l~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~---------------- 256 (435)
+.+-..+|+|||.+ .|+++|+|+... +.++..--|+||-|| .+..|.+++.+....
T Consensus 25 ~~~i~~v~cy~E~~~~l~~tldsl~~~-~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (527)
T PF03142_consen 25 KFVICLVPCYSEGEEELRTTLDSLATT-DYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSL 103 (527)
T ss_pred ceEEEEEccccCChHHHHHHHHHHHhc-CCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEe
Confidence 45677999999854 778888888652 333334445555554 455778887766441
Q ss_pred ------------------hCC-----------c-eEEEec----------CCCCCCHHHHHHHHHhh-------------
Q psy3650 257 ------------------YGS-----------E-KIVLKP----------RKKKLGLGTAYMHGLKY------------- 283 (435)
Q Consensus 257 ------------------~~~-----------~-~i~~~~----------~~~n~g~~~a~n~g~~~------------- 283 (435)
+.. + -++++. .++|.||--..-..+..
T Consensus 104 ~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~ 183 (527)
T PF03142_consen 104 GEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPL 183 (527)
T ss_pred ccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchH
Confidence 001 1 123333 47788876322221111
Q ss_pred ----------------ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCce-e--ccchhHHHHHHHH
Q psy3650 284 ----------------ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGV-Y--GWDFKRKLVSRGA 343 (435)
Q Consensus 284 ----------------a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~-~--~~~~~~~~~~~~~ 343 (435)
...||++.+|+|+.+.|+.+.+|+..+. +++...++|.-...+.+. + -.+.+....+...
T Consensus 184 ~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l 263 (527)
T PF03142_consen 184 ELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHL 263 (527)
T ss_pred HHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHH
Confidence 1239999999999999999999999985 667788888543433321 1 1122333344444
Q ss_pred HHHHHHhcCCCccccccceeeecHHHHHH-----------------hhhcc------cC-cccchhhHHHHHHHHC--CC
Q psy3650 344 NYLTQLLLRPGVSDLTGSFRLYKKQVLEN-----------------LVSSC------VS-KGYVFQMEMVIRARQY--NY 397 (435)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----------------~~~~~------~~-~~~~~D~el~lr~~~~--G~ 397 (435)
.......+| .+.-+.|+|.++|-++.+. ..... .. ..++||-.|+..+.+. |+
T Consensus 264 ~Ka~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~~~ 342 (527)
T PF03142_consen 264 QKAFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFPGY 342 (527)
T ss_pred HHHHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCCCc
Confidence 444444555 5667789999998877665 11100 01 2467999999888887 88
Q ss_pred cEEEeeeEEeecccccccCC-HHHHHHHHHHHH
Q psy3650 398 TIGEVPISFVDRVYGESKLG-GTEIFQFAKALL 429 (435)
Q Consensus 398 ~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~ 429 (435)
|+.++|.+........+-.- +.+..||+.+.+
T Consensus 343 k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi 375 (527)
T PF03142_consen 343 KTEYVPSAVAYTDAPETFSVFLSQRRRWINSTI 375 (527)
T ss_pred eEEEcccccccccCCccHHHHHHHhhhccchhH
Confidence 99999988766543333222 455666665543
No 131
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=98.50 E-value=8.8e-07 Score=75.81 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=78.8
Q ss_pred EEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccc
Q psy3650 63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGS 136 (435)
Q Consensus 63 ~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 136 (435)
||+++|+|+.++|++++++++.+++++++++.+.......+ .+..+....... .......+ ......|+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~ 75 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRG----SLLTRLQDFEYAISHGLSRLSQSSLG-RPLFLSGS 75 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCC----ChhheeehhhhhhhhhhhHHHHHhcC-CCccccCc
Confidence 78999999999999999999999866889998887654222 122222211111 11111112 22334577
Q ss_pred eehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650 137 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
+.++++++++++++........+|.+++.|+.++|+++..+|..
T Consensus 76 ~~~~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~ 119 (193)
T PF13632_consen 76 GMLFRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDA 119 (193)
T ss_pred ceeeeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEeccc
Confidence 78999999999965544666778999999999999998877654
No 132
>PLN02893 Cellulose synthase-like protein
Probab=98.43 E-value=3.8e-06 Score=83.28 Aligned_cols=170 Identities=12% Similarity=0.015 Sum_probs=107.0
Q ss_pred eEEEecCCCCC-----CHHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcC----CCceEEeeeEECC
Q psy3650 261 KIVLKPRKKKL-----GLGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQE----NLDVVTGTRYVGT 326 (435)
Q Consensus 261 ~i~~~~~~~n~-----g~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~----~~~~v~~~~~~~~ 326 (435)
.++++.++++. -|+.|+|.+++. ++|+||+.+|+|.. ..|+.+.+.+..+.++ +.+.|+.+....+
T Consensus 265 ~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~ 344 (734)
T PLN02893 265 NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHG 344 (734)
T ss_pred ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccC
Confidence 56677777653 388999999996 68999999999998 5789999999988764 4677776665443
Q ss_pred CceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHH---------Hhh-----------------------
Q psy3650 327 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE---------NLV----------------------- 374 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~----------------------- 374 (435)
-... ..+......++.......-+..-....|...++||+++- ++.
T Consensus 345 i~~~--D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 422 (734)
T PLN02893 345 INKN--DIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHH 422 (734)
T ss_pred CCcC--CCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhh
Confidence 2111 112222222333333333333333333344589999993 110
Q ss_pred ---h-c-----------ccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC----CHHHHHHHHHHHHHHhh
Q psy3650 375 ---S-S-----------CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL----GGTEIFQFAKALLYLFA 433 (435)
Q Consensus 375 ---~-~-----------~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~----~~~~~~~~~~~~~~~f~ 433 (435)
+ + .......||+...++++.+|+|..|+.-.... ..|.+-. .+.+..|++...++.++
T Consensus 423 v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~a-f~G~aP~~l~~~l~Q~~RWa~G~lqI~~ 499 (734)
T PLN02893 423 VAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPA-FLGDSPINLHDVLNQQKRWSVGLLEVAF 499 (734)
T ss_pred ccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchh-hccCCCCCHHHHHHHHHHHHhhhHHHHh
Confidence 0 0 01122369999999999999999997532111 1233222 26888999999888875
No 133
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.40 E-value=2.3e-05 Score=66.70 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=110.2
Q ss_pred CcceEEEEeccCCCCCh---HHHHHHH--HHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650 199 KNKYTVLLPTYNEKENL---PIIVYLI--TKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL 273 (435)
Q Consensus 199 ~~~isivip~~n~~~~l---~~~l~~l--~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~ 273 (435)
+++++++||+--.++.- .+.+... .+. -++....++|++++.+.-+ ..++.+.+..+.+...-...++.+..
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~-fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~~~~yl~~~s~~~F~s 77 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKV-FTSSDITMVICLRAHEVMD--RLIRSYIDPMPRVLYLDFGSPEPFAS 77 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhh-ccccccEEEEEEecchhHH--HHHHHHhccccceEEEecCCCccccc
Confidence 36788999987544322 2223211 111 2455678999998877433 55667766666544444433333333
Q ss_pred -HHHHHHHHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHh----cCCC--ceEEeeeEECCCceeccchhHHHHHHH
Q psy3650 274 -GTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQ----QENL--DVVTGTRYVGTGGVYGWDFKRKLVSRG 342 (435)
Q Consensus 274 -~~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~----~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~ 342 (435)
+...|.|+.++. +++|+|+|.|+..+.+...+|+.-.. +..+ -+|.+......... .......+.+
T Consensus 78 ~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~---~v~f~~~d~f 154 (346)
T COG4092 78 ETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADT---QVFFDVEDMF 154 (346)
T ss_pred hhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhh---hHHHHHHHHh
Confidence 678888888886 89999999999999888888885332 1222 33444443332211 1111122222
Q ss_pred HHHH------HHHhcCCC-ccccccceeeecHHHHHHhhhcccCc-cc-chhhHHHHHHHHC
Q psy3650 343 ANYL------TQLLLRPG-VSDLTGSFRLYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQY 395 (435)
Q Consensus 343 ~~~~------~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~ 395 (435)
.... .......+ +.....+..++.|..|-..||+.+.. ++ .||.|+..|+...
T Consensus 155 ~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 155 LDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred hhhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH
Confidence 1111 11111112 12234455799999999998876653 33 4899999996554
No 134
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.21 E-value=3e-06 Score=73.33 Aligned_cols=141 Identities=14% Similarity=0.278 Sum_probs=74.5
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCC-CCCcHHHHHHHH-hcCCCcEE--EEeeeecCCCccCccc--
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-HPKFIPEMIKLQ-QQENLDVV--TGTRYVGTGGVYGWDF-- 109 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~-~~~~l~~~~~~~-~~~~~~~v--~g~~~~~~~~~~~~~~-- 109 (435)
.|.+.......+.+.+.|+|++.|+++|++|++.|..+ +++|+..+++.+ ++++.+++ .|+......+...+..
T Consensus 30 ~i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~ 109 (217)
T PF13712_consen 30 LIEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNK 109 (217)
T ss_dssp EEEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEE
T ss_pred EEEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCcccccccc
Confidence 34444444557899999999999999999999999955 689999999999 44555554 3555444332211111
Q ss_pred chhh--hhchHH-----HHHHH-H------hCCCccccccceehhhHHHHHHhhcccc-ccCc-hhhHHHHHHHHhhcce
Q psy3650 110 KRKL--VSRGAN-----YLTQL-L------LRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGY-VFQMEMVIRARQYNYT 173 (435)
Q Consensus 110 ~~~~--~~~~~~-----~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~d~~l~~r~~~~g~~ 173 (435)
..+. ..+... ..... . ....+.-..+.+.+.+++++ +..+. ..+| .+|.++++++.++|++
T Consensus 110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~---~fde~~~~gfH~Ydvd~cl~~~~~G~~ 186 (217)
T PF13712_consen 110 VGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP---RFDEDLFTGFHFYDVDQCLEARRAGYR 186 (217)
T ss_dssp EEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB--------SS--SSSSHHHHHHHHHHHTT-E
T ss_pred cccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC---CCCccccCCcchHHHHHHHHHHHhCCE
Confidence 0000 011000 01011 1 11223333467788899888 22222 3666 6799999999999999
Q ss_pred eEeeee
Q psy3650 174 IGEVPI 179 (435)
Q Consensus 174 ~~~~~~ 179 (435)
+...+.
T Consensus 187 v~~~~~ 192 (217)
T PF13712_consen 187 VVVPPP 192 (217)
T ss_dssp EEE---
T ss_pred EEecCc
Confidence 855443
No 135
>KOG2571|consensus
Probab=97.96 E-value=0.00013 Score=73.42 Aligned_cols=138 Identities=18% Similarity=0.219 Sum_probs=89.9
Q ss_pred CEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH---hcCCCccccccce
Q psy3650 287 NFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSF 362 (435)
Q Consensus 287 d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 362 (435)
+||+++|+|+.+.|+.+..|++.++ ++.++.++| +.....+.+ .-+.+.+-..+.+.+.+. .+| -+.-..|+|
T Consensus 442 ~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w-~v~~Q~FEY~Ish~l~Ka~ESvFG-~VsclPGcf 518 (862)
T KOG2571|consen 442 DYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSW-VVAYQNFEYAISHNLQKATESVFG-CVSCLPGCF 518 (862)
T ss_pred eEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCce-EEeHHHHHHHHHHHHHHhhhhhce-eEEecCchh
Confidence 7889999999999999999999997 677888888 555444322 233444444444444332 222 234568889
Q ss_pred eeecHHHHHHhh-----hcc-------cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHH
Q psy3650 363 RLYKKQVLENLV-----SSC-------VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKA 427 (435)
Q Consensus 363 ~~~~r~~~~~~~-----~~~-------~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~ 427 (435)
.+||-+++..=. +.. .-..+++|-.||.++..+||++.|++-+........+-.. +-+..|+..+
T Consensus 519 s~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 519 SLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred HHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence 999996665432 111 1134679999999999999999999987755433332222 2334444444
No 136
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.96 E-value=0.00015 Score=70.86 Aligned_cols=200 Identities=10% Similarity=0.038 Sum_probs=127.2
Q ss_pred CCCcceEEEEeccCC-CCChHHHHHHHHHHhhcCCCCeEEEEEeCCC-Ccc-----hHHHHHHHHHHhCCceEEEecCC-
Q psy3650 197 SVKNKYTVLLPTYNE-KENLPIIVYLITKYMDEGNYPYEIIVIDDGS-PDG-----TLDAAKQLQSIYGSEKIVLKPRK- 268 (435)
Q Consensus 197 ~~~~~isivip~~n~-~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~i~~~~~~- 268 (435)
.....|.||||+.+. ...+.+.++...+...++..+..++||-.+. .|. ..+.++++..+++..++.++...
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~ 323 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKT 323 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecC
Confidence 445789999999999 8888999998888755556667776666655 221 23577788888888888888877
Q ss_pred CCCCHHHHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECC--CceeccchhHHHHHHHHHH
Q psy3650 269 KKLGLGTAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT--GGVYGWDFKRKLVSRGANY 345 (435)
Q Consensus 269 ~n~g~~~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 345 (435)
+++..+.|+..|++.. ..+.++++|.|..++++.|.+.-..... + ..|..+..... .... +..........
T Consensus 324 ~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~-g-~qvy~PI~Fs~y~p~~~----~~~~~~~~~~~ 397 (499)
T PF05679_consen 324 GEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP-G-KQVYFPIVFSQYNPDIV----YAGKPPEPDQF 397 (499)
T ss_pred CCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc-C-cEEEEeeeccccCCccc----ccCCCCccccC
Confidence 7888999999999965 4589999999999999999998876543 2 23444433321 1100 00000000000
Q ss_pred HHHHhcCCCcc-ccccceeeecHHHHHHh--hhc-ccCcccc-hhhHHHHHHHHCC--CcEEEeee
Q psy3650 346 LTQLLLRPGVS-DLTGSFRLYKKQVLENL--VSS-CVSKGYV-FQMEMVIRARQYN--YTIGEVPI 404 (435)
Q Consensus 346 ~~~~~~~~~~~-~~~~~~~~~~r~~~~~~--~~~-~~~~~~~-~D~el~lr~~~~G--~~i~~~p~ 404 (435)
. ..-..++. ..+-|..++=++-+..+ ++. ....+++ ||+||.-+..+.| +++.-.|.
T Consensus 398 ~--i~~~~G~w~~~gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~e 461 (499)
T PF05679_consen 398 D--ISKDTGFWRRFGFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVE 461 (499)
T ss_pred c--cCCCCCccccCCCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccC
Confidence 0 00001111 11223344555555566 332 3345554 8999999999999 78866653
No 137
>KOG2547|consensus
Probab=97.95 E-value=2.7e-05 Score=69.77 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=103.5
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCH---HHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL---GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~---~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
.++|++.+-+.++|...++++++.+++|++..++.-..+.-|. -.+.--|.+.|+.|+|++.|+|..+.|+.+-.|+
T Consensus 113 ~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~ 192 (431)
T KOG2547|consen 113 HKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMA 192 (431)
T ss_pred CceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHH
Confidence 3599999999999999999999999999876666544444453 3455578899999999999999999999999999
Q ss_pred HHHhc-CCCcEEEEeeeecCCCccCcccchhhh--hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCc-h
Q psy3650 83 KLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLV--SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGY-V 158 (435)
Q Consensus 83 ~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 158 (435)
..... +.-..|.+.++....+.....+.+... +.....+.....+.... .+=..++||++++..|+......+ .
T Consensus 193 t~M~shekmalvtq~py~~dr~Gf~atle~~~fgTsh~r~yl~~n~~~~~c~--tgms~~mrK~~ld~~ggi~~f~~yLa 270 (431)
T KOG2547|consen 193 TTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFGTSHPRIYLSGNVLGFNCS--TGMSSMMRKEALDECGGISAFGGYLA 270 (431)
T ss_pred HhhhcccceeeecCCceeeccccchhhhhheeeccCCceEEEcccccccccc--ccHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99865 345666666654433222111111110 00000000000111111 111237899999998765544444 3
Q ss_pred hhHHHHHHHHhhcce
Q psy3650 159 FQMEMVIRARQYNYT 173 (435)
Q Consensus 159 ~d~~l~~r~~~~g~~ 173 (435)
+|+-+..-....|++
T Consensus 271 edyFaaksllSRG~k 285 (431)
T KOG2547|consen 271 EDYFAAKSLLSRGWK 285 (431)
T ss_pred HHHHHHHHHHhhhhh
Confidence 344444344557775
No 138
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.88 E-value=3.9e-05 Score=57.36 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=43.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC-H-HHHHHHHHhh-ccCCEEEEEcCCCCCCCC
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-L-GTAYMHGLKY-ATGNFIIIMDADLSHHPK 76 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g-~-~~a~n~gl~~-a~gd~i~~lD~D~~~~~~ 76 (435)
-.++|+||||+|+|.++++++ +.+.+.....+...+ . ...++..++. ..++|++++|+|..+.+.
T Consensus 20 d~i~i~d~~s~D~t~~~l~~~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 20 DHIYIYDDGSTDGTREILRAL----PGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPP 87 (97)
T ss_pred CEEEEEECCCCccHHHHHHhC----CCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecC
Confidence 368999999999999999886 445555543322211 2 2334444444 357999999999955443
No 139
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=97.84 E-value=8.8e-05 Score=67.87 Aligned_cols=86 Identities=22% Similarity=0.364 Sum_probs=60.8
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCC----CC----------CCHHH----HHHHHHhhccCCEEEE
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----KK----------LGLGT----AYMHGLKYATGNFIII 66 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~----~n----------~g~~~----a~n~gl~~a~gd~i~~ 66 (435)
..+++|||.+||+.+++.++++.+.. .+.++.+. .+ .+.+. |+|.++..+.++++++
T Consensus 29 ~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vII 103 (334)
T cd02514 29 AEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVNPPHKFQGYYRIARHYKWALTQTFNLFGYSFVII 103 (334)
T ss_pred CCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccCcccccchhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 44699999999999888888887742 23333221 12 12333 8999999888999999
Q ss_pred EcCCCCCCCCc---HHHHHHHHhcCC-CcEEEE
Q psy3650 67 MDADLSHHPKF---IPEMIKLQQQEN-LDVVTG 95 (435)
Q Consensus 67 lD~D~~~~~~~---l~~~~~~~~~~~-~~~v~g 95 (435)
|++|+.+.|++ ++.++..+++++ ..+|.|
T Consensus 104 LEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa 136 (334)
T cd02514 104 LEDDLDIAPDFFSYFQATLPLLEEDPSLWCISA 136 (334)
T ss_pred ECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEe
Confidence 99999999994 566677665544 333444
No 140
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.81 E-value=0.0001 Score=55.09 Aligned_cols=80 Identities=21% Similarity=0.161 Sum_probs=50.5
Q ss_pred cCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HHH-HHHHHHhh-cc
Q psy3650 209 YNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LGT-AYMHGLKY-AT 285 (435)
Q Consensus 209 ~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~~-a~n~g~~~-a~ 285 (435)
+|++..|++.+..-... .--+++|+||||+|+|.++++++ +.+.+.....+.... ... .++...+. ..
T Consensus 1 rne~~~L~~wl~~~~~l-----G~d~i~i~d~~s~D~t~~~l~~~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLAL-----GVDHIYIYDDGSTDGTREILRAL----PGVGIIRWVDPYRDERRQRAWRNALIERAFD 71 (97)
T ss_pred CChHHHHHHHHHHHHHc-----CCCEEEEEECCCCccHHHHHHhC----CCcEEEEeCCCccchHHHHHHHHHHHHhCCC
Confidence 47777777777654321 12279999999999999998876 445555544322211 222 23333333 36
Q ss_pred CCEEEEEeCCCC
Q psy3650 286 GNFIIIMDADLS 297 (435)
Q Consensus 286 ~d~v~~~d~D~~ 297 (435)
+++++++|+|-.
T Consensus 72 ~dWvl~~D~DEf 83 (97)
T PF13704_consen 72 ADWVLFLDADEF 83 (97)
T ss_pred CCEEEEEeeeEE
Confidence 799999999975
No 141
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=0.0017 Score=61.29 Aligned_cols=204 Identities=12% Similarity=0.147 Sum_probs=117.1
Q ss_pred CcceEEEEeccCCCCC-hHHHHHHHHHHhhc--CCCCeEEEEEeCCCCcchHHHHH-----HHHHHh-CCceEEEecCCC
Q psy3650 199 KNKYTVLLPTYNEKEN-LPIIVYLITKYMDE--GNYPYEIIVIDDGSPDGTLDAAK-----QLQSIY-GSEKIVLKPRKK 269 (435)
Q Consensus 199 ~~~isivip~~n~~~~-l~~~l~~l~~~~~~--~~~~~eiivvdd~s~d~t~~~~~-----~~~~~~-~~~~i~~~~~~~ 269 (435)
.....|++|+|||+.. +-.-|+.....+.. .-.++++.|+.|..+.+. ...+ +++.+- ..-+|.+....+
T Consensus 143 ~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdi-alAEq~a~~~l~~e~~g~~~ifYRrRr~ 221 (736)
T COG2943 143 LHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDI-ALAEQKAWAELCRELGGEGNIFYRRRRR 221 (736)
T ss_pred ccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchh-hhhHHHHHHHHHHHhCCCCceeeehHhh
Confidence 4458999999999752 11112222222222 235688988887655432 1121 223222 223566666666
Q ss_pred CCC-HHHHHHHHHhhc--cCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHHH
Q psy3650 270 KLG-LGTAYMHGLKYA--TGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY 345 (435)
Q Consensus 270 n~g-~~~a~n~g~~~a--~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (435)
|.+ |+.++..-.+.= ..+|.+++|+|..+..+.+..+++.++ +++++++.......++..- +...+++..+.+..
T Consensus 222 n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL-~AR~qQFatrvYGp 300 (736)
T COG2943 222 NVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTL-YARCQQFATRVYGP 300 (736)
T ss_pred hhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchH-HHHHHHHHHHHhch
Confidence 666 566665555543 459999999999999999999999997 4567777766655554311 11233344443333
Q ss_pred HHHH--hc-CCCccccccceeeecHHHHHHhhhcccC---cccc-----hhhHHHHHHHHCCCcEEEeee
Q psy3650 346 LTQL--LL-RPGVSDLTGSFRLYKKQVLENLVSSCVS---KGYV-----FQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 346 ~~~~--~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~-----~D~el~lr~~~~G~~i~~~p~ 404 (435)
+... .+ ..+-+.-.|...++|.+.|.+..+.... ..|+ -|+-=...+++.|.-+-..|.
T Consensus 301 l~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~d 370 (736)
T COG2943 301 LFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYD 370 (736)
T ss_pred HHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEecc
Confidence 2211 11 1122233566679999999998543221 1111 244444557888888765553
No 142
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.75 E-value=0.0002 Score=67.20 Aligned_cols=197 Identities=17% Similarity=0.174 Sum_probs=97.8
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-----CCc-eEEEecCCCC-
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-----GSE-KIVLKPRKKK- 270 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~-~i~~~~~~~n- 270 (435)
..+.+-|+|.+||+...+.++|++|.+.. .....+.|+|..||+...+.+.++.+.... +.. .+.+.+...+
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~ 169 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKF 169 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-GGG
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCcccccc
Confidence 35678999999999999999999998753 223457899999999988888888774321 100 1111111101
Q ss_pred ---CCHH----HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHH---HhcCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650 271 ---LGLG----TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL---QQQENLDVVTGTRYVGTGGVYGWDFKRKLVS 340 (435)
Q Consensus 271 ---~g~~----~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
++.+ .|++..+..-..+.++++..|..++||+++=+... +++.+.-.+++. ...++... ....
T Consensus 170 ~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa-wNdnG~~~---~~~~--- 242 (434)
T PF03071_consen 170 KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA-WNDNGKEH---FVDD--- 242 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES---TT-BGG---GS-T---
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc-cccCCccc---cccC---
Confidence 1112 23333333334689999999999999988877654 344333333332 23332100 0000
Q ss_pred HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650 341 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV 410 (435)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~ 410 (435)
.....+....+.. |-..|++|+.++++...+ ...| +|..|=...+.+|-......+++..+.
T Consensus 243 ----~~~~~lyRsdffp--glGWml~r~~w~el~~~W-p~~~-WDdwmR~~~~rkgR~cIrPeisRt~~f 304 (434)
T PF03071_consen 243 ----SRPSLLYRSDFFP--GLGWMLTRELWDELEPKW-PKAF-WDDWMRQPEQRKGRQCIRPEISRTYHF 304 (434)
T ss_dssp ----T-TT-EEEESS-----SSEEEEHHHHHHHGGG---SS--HHHHHTSHHHHTT-EEEEESSBSEEE-
T ss_pred ----CCccceEecccCC--chHHHhhHHHHHhhcccC-CCCC-chhhhcCccccCCCceeeccCCCcccc
Confidence 0011222223222 323699999999986543 3344 465555557888777766556665554
No 143
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.73 E-value=0.0042 Score=55.96 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=99.5
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP------- 266 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~------- 266 (435)
.+..||||+.||.-. +++-+ +.--..++-||+|.|++. |.. .+.++.+...-.. .+.+++
T Consensus 51 ~~mAIVVP~KdE~l~---lleGV---L~gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r-~~i~vHQkDp~la 123 (393)
T PRK14503 51 GRMAIVVPVKNERLK---LLEGV---LKGIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQR-PIIIVHQKDPGLA 123 (393)
T ss_pred hCcEEEEEcCCCchh---HHhhH---hhcCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhcC-ceEEEEcCCHHHH
Confidence 468999999998753 33333 334445789999999866 332 3344455432111 222222
Q ss_pred ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650 267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR 322 (435)
Q Consensus 267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~ 322 (435)
..-..||+-++-.|+..|+ .+||.|+|+|+.+|-. +.+-+..+. +.++.+|--.-
T Consensus 124 ~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGa-V~EYvk~yAAGf~ma~spytMVRi~W 202 (393)
T PRK14503 124 EALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGA-VNEYVKIYAAGFLMAESPYTMVRIHW 202 (393)
T ss_pred HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCch-HHHHHHHHHhhhcccCCCCceEEEEe
Confidence 1123478888888988875 4999999999988744 444444332 23333332111
Q ss_pred EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCCccc---cccceeeecHHHHHHhhhcccCcccc
Q psy3650 323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPGVSD---LTGSFRLYKKQVLENLVSSCVSKGYV 383 (435)
Q Consensus 323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~ 383 (435)
... ++. ...+.....+.+++.+.+.....+..... ..+|=-++++++++.+ ++..+|.
T Consensus 203 ~~KPKv~~~~lyF~k~GRvSel~nr~LN~l~~~~~gf~t~li~TGNAGEhAmt~~La~~l---~f~tGY~ 269 (393)
T PRK14503 203 RYKPKVTEDRLYFRKWGRVSEITNRYLNQLISEYTGFETDIIKTGNAGEHAMTMKLAEIM---PFSTGYS 269 (393)
T ss_pred cCCCceecCeEEEecCcchhHHHHHHHHHHHhhhccccccceecCCchhhHhhHHHHHhC---CCCCCcc
Confidence 000 111 12234556677777777776665543221 1234468999999888 5566666
No 144
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.72 E-value=0.0051 Score=55.10 Aligned_cols=174 Identities=18% Similarity=0.231 Sum_probs=101.2
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP------- 266 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~------- 266 (435)
.+..||||+.||.-. +++-+ +.--..++-||+|.|++. |.. .+.++.+...- +-.+..++
T Consensus 50 ~~maIVVP~KdE~l~---lleGV---L~gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQkDp~la 122 (381)
T TIGR02460 50 GKTAIVVPVKNEKLH---LLEGV---LSGIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQKDPALA 122 (381)
T ss_pred hCcEEEEEcCCCchh---HHhhH---hhcCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEcCCHHHH
Confidence 468999999998753 33333 334445789999999876 322 23444554321 11222222
Q ss_pred ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650 267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR 322 (435)
Q Consensus 267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~ 322 (435)
..-..||+-++-.|+..|+ .+||.|+|+|+.+|-. +.+-+..+. ..++.+|--.-
T Consensus 123 ~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa-V~EYvk~yAaGf~ma~spy~MVRi~W 201 (381)
T TIGR02460 123 EAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA-VNEYVKIYAAGFLMATSPYSMVRIHW 201 (381)
T ss_pred HHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCch-HHHHHHHHHhhhcccCCCCeeEEEEe
Confidence 1123478888888988875 4999999999988744 444444332 23333332111
Q ss_pred EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCCcc---ccccceeeecHHHHHHhhhcccCcccch
Q psy3650 323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPGVS---DLTGSFRLYKKQVLENLVSSCVSKGYVF 384 (435)
Q Consensus 323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 384 (435)
... +++ ...+.....+.+++.+.+.....+.... ...+|=-++++++++++ ++..+|..
T Consensus 202 ~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfet~ii~TGnAGEhAmt~~La~~l---~f~tGYaV 269 (381)
T TIGR02460 202 RYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFETDIIKTGNAGEHALTMKLAEIL---PFSSGYSV 269 (381)
T ss_pred cCCCceecCeEEEcCCCchhHHHHHHHHHHHHhhccccCcceecccchhhhhhHHHHhhC---CCCCCccc
Confidence 000 111 1234556677778777777666554322 12334468999999988 55677763
No 145
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.55 E-value=0.0013 Score=57.72 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=84.3
Q ss_pred CCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhC-------Cc-eEEEe
Q psy3650 196 DSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYG-------SE-KIVLK 265 (435)
Q Consensus 196 ~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~-------~~-~i~~~ 265 (435)
....+.|-|+.|..|.+..+....+.|.+ +.++...+.+-++.+.++ |.+.+.+++...... .+ ++.++
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~-L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLS-LTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHh-CCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEE
Confidence 34578999999999999999988887766 354555578866666677 788787775433311 11 34443
Q ss_pred cCCCCCCH----------------------HHHHHHHHhhcc---CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650 266 PRKKKLGL----------------------GTAYMHGLKYAT---GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 266 ~~~~n~g~----------------------~~a~n~g~~~a~---~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
.. .+|. +.++|..+..+- .+||+++|+|.. .||+.|+.|+. ++.|+++
T Consensus 100 ~~--df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIiv 173 (269)
T PF03452_consen 100 RK--DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIV 173 (269)
T ss_pred cC--CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEc
Confidence 32 2221 256666666653 499999999997 77777777764 5778888
Q ss_pred eeeEEC
Q psy3650 320 GTRYVG 325 (435)
Q Consensus 320 ~~~~~~ 325 (435)
+.....
T Consensus 174 Pn~~~~ 179 (269)
T PF03452_consen 174 PNCWRR 179 (269)
T ss_pred cceeec
Confidence 877665
No 146
>KOG3916|consensus
Probab=97.53 E-value=0.00069 Score=60.25 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=102.9
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
..++.||||..|+++.|..+|..+...+.+..-+|.|+||.-- ..+.+..+.-+|
T Consensus 150 r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVieQ~-------------------------g~~~FNRakL~N 204 (372)
T KOG3916|consen 150 RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVIEQA-------------------------GNKPFNRAKLLN 204 (372)
T ss_pred cceeEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEEEec-------------------------CCCcccHHHhhh
Confidence 5689999999999999999999998887766667888887421 123445677788
Q ss_pred HHHhhccC----CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650 279 HGLKYATG----NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG 354 (435)
Q Consensus 279 ~g~~~a~~----d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
.|+..|.. |-++|=|-|....-| ..-..++.+ .|.+ ...+.+..+..+
T Consensus 205 VGf~eAlkd~~wdCfIFHDVDllPenD------------rNlY~C~~~------------PRH~----sva~dk~gy~LP 256 (372)
T KOG3916|consen 205 VGFLEALKDYGWDCFIFHDVDLLPEND------------RNLYGCPEQ------------PRHM----SVALDKFGYRLP 256 (372)
T ss_pred hHHHHHHHhcCCCEEEEecccccccCC------------CCccCCCCC------------Ccch----hhhhhhcccccc
Confidence 88887733 557777777553322 111111111 1111 112223333444
Q ss_pred ccccccceeeecHHHHHHhhhcc-cCcccc-hhhHHHHHHHHCCCcEEEeee
Q psy3650 355 VSDLTGSFRLYKKQVLENLVSSC-VSKGYV-FQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~-~D~el~lr~~~~G~~i~~~p~ 404 (435)
+...-||-.+++++-|++|.|++ ...+|+ ||-||..|++.+|++|.-.|.
T Consensus 257 Y~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~ 308 (372)
T KOG3916|consen 257 YKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPP 308 (372)
T ss_pred chhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCC
Confidence 45555777899999999996653 345664 999999999999999988774
No 147
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.34 E-value=0.013 Score=52.94 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=77.4
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEecC------
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKPR------ 267 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~~------ 267 (435)
.+.+||||+.||.- .+++-+ +..-..++-||+|.|++. |.. .+.++++...-.. .+.+++.
T Consensus 50 ~~maIVVP~KnE~l---~lleGV---L~gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r-~~~~vHQkDp~lA 122 (381)
T PF09488_consen 50 SKMAIVVPCKNEKL---KLLEGV---LSGIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRR-QIIIVHQKDPGLA 122 (381)
T ss_dssp TTEEEEEEESS--H---HHHHHH---HHCS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-HHHH
T ss_pred hCcEEEEECCCCch---hhhhhh---hhcCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhcC-ceEEEecCCHHHH
Confidence 46899999999874 334333 334456789999999998 544 3555666543211 3333321
Q ss_pred ----------------CCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHH------hcCCCceEEeee
Q psy3650 268 ----------------KKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTR 322 (435)
Q Consensus 268 ----------------~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~------~~~~~~~v~~~~ 322 (435)
.-..||+-++-.|+..|+ .+||.|+|+|+.+|- .+.+-+..+ .+.++.+|--.-
T Consensus 123 ~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG-aV~EYvk~yAAGf~ms~spytMVRi~W 201 (381)
T PF09488_consen 123 EAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG-AVNEYVKDYAAGFAMSESPYTMVRIHW 201 (381)
T ss_dssp HHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH-HHHHHHHHHHHHHHC-SSSCEEEEEE-
T ss_pred HHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc-hHHHHHHHHHhhhcccCCCceEEEEEe
Confidence 124588899999998874 499999999988763 344443322 234444443211
Q ss_pred EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650 323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPG 354 (435)
Q Consensus 323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
... +++ ...|...+...+++.+.+.+...+..
T Consensus 202 ~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~~gfe 239 (381)
T PF09488_consen 202 RSKPKVVKGELYFKKWGRVSEITNRYLNRLISAITGFE 239 (381)
T ss_dssp -----TT---HHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred cCCCceecCcEEEeecccccHHHHHHHHHHhccccCCC
Confidence 111 111 11234455667778888877766654
No 148
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=97.32 E-value=0.0074 Score=52.64 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=99.9
Q ss_pred EEEeccCCCCChHHHHH-HHHHHhhc-CCCCeEEEEEeCCCCcchHHHHHHHHHH---hCCceEEEecCCCCCC------
Q psy3650 204 VLLPTYNEKENLPIIVY-LITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSI---YGSEKIVLKPRKKKLG------ 272 (435)
Q Consensus 204 ivip~~n~~~~l~~~l~-~l~~~~~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~~~~~~~n~g------ 272 (435)
|..-.||.+..++.... ++.+.... ...++-|-|+++||.|.|.+.|+.+... .+....++........
T Consensus 4 IA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~ 83 (241)
T PF11735_consen 4 IAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPP 83 (241)
T ss_pred EEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccc
Confidence 44456788888876655 55554443 2356888899999999999999988733 2222222221111111
Q ss_pred -------HHHHHHHHHhhc---------cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECC----C-----
Q psy3650 273 -------LGTAYMHGLKYA---------TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT----G----- 327 (435)
Q Consensus 273 -------~~~a~n~g~~~a---------~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----~----- 327 (435)
.+.-+|.+++-- .-+-|+|+| |..+.++.+.+++..-...++++++|--.... +
T Consensus 84 ~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCamDf~~~~~fYD~wv~R 162 (241)
T PF11735_consen 84 RLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACAMDFINPPKFYDTWVLR 162 (241)
T ss_pred hhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhhcccccCccccceeEEe
Confidence 146778887632 127799999 88899998999988765567888887332110 1
Q ss_pred ----ceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHh
Q psy3650 328 ----GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373 (435)
Q Consensus 328 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 373 (435)
.....+.+..+...............++..+.+|..+|+.+.|..-
T Consensus 163 D~~G~~~~~~~~p~f~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~ 212 (241)
T PF11735_consen 163 DIEGDSFGSPFWPYFRSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPP 212 (241)
T ss_pred cCCCCccccccCcCcCCHHHHHHHhcCCCeeeecccCCcccccchhhccC
Confidence 0111122222222212222222333456667788889998888764
No 149
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.04 E-value=0.0026 Score=56.29 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=83.8
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC---CC-----
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK---KL----- 271 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~---n~----- 271 (435)
-.++..|-+.||+..++.+++|+...++ |.|+.=|.|+|+|.+++.++++++|...-+..+.+. |.
T Consensus 87 l~~~~~iRvKnE~~tl~~si~S~Lpai~------~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n 160 (347)
T PF06306_consen 87 LNPWAFIRVKNEAMTLAESIESILPAID------EGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEEN 160 (347)
T ss_pred CCcceEEEEcchhhhHHHHHHHHHHHHh------ccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhh
Confidence 3588999999999999999999988777 899999999999999999999999974322222111 11
Q ss_pred CHHHHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeE
Q psy3650 272 GLGTAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 323 (435)
Q Consensus 272 g~~~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 323 (435)
....=.|.++... +.+|++=+|+|.+..++-|-+..-.. ....++|.-+|.
T Consensus 161 ~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~p-k~~~~~v~YsRI 212 (347)
T PF06306_consen 161 SLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIP-KNDYDVVSYSRI 212 (347)
T ss_pred hhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheee-ccccceEEecce
Confidence 1223345555553 57999999999998877654333222 345667766553
No 150
>KOG3588|consensus
Probab=96.93 E-value=0.012 Score=53.02 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=119.5
Q ss_pred CCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC-cch--HHHHHHHHHHhCCceEEEecCCCCC
Q psy3650 195 GDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP-DGT--LDAAKQLQSIYGSEKIVLKPRKKKL 271 (435)
Q Consensus 195 ~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~-d~t--~~~~~~~~~~~~~~~i~~~~~~~n~ 271 (435)
.....|.|.+++|...+...+.+...++ ....+.+++++|+-=|++ ++- .+.+..+...++.+ ..+...+.+
T Consensus 224 ~~i~~pgih~i~pl~gr~~~f~rf~q~~---c~~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~--q~l~lngeF 298 (494)
T KOG3588|consen 224 TLIEDPGIHMIMPLRGRAAIFARFAQSI---CARGDDRLALSVVYFGYSEDEMAKRETITSLRASFIPV--QFLGLNGEF 298 (494)
T ss_pred ccccCCCceEEEeccchHHHhhhhhHHH---hccCCCceEEEEEEecCCChHHHhhhHHHHHhhcCCce--EEecccchh
Confidence 3345678999999999998888877744 334456777766665543 332 23444666777654 555555567
Q ss_pred CHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650 272 GLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 350 (435)
Q Consensus 272 g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
..+.|+..|.+.-+. -.+.|+|-|..+..++|...-..- ..+..+-.+....-.+.. -++. -.+.........
T Consensus 299 SRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt-~~gkqiyfPivFS~ynp~---ivy~--~~~~~p~e~~~~ 372 (494)
T KOG3588|consen 299 SRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNT-ILGKQIYFPIVFSQYNPE---IVYE--QDKPLPAEQQLV 372 (494)
T ss_pred hhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhcc-CCCceEEEEEEEeecCcc---eeec--CCCCCchhHhee
Confidence 788999999998866 456778999888877776654332 123333222221111100 0000 000000000011
Q ss_pred c--CCC-ccccccceeeecHHHHHHhhhcc-cCcccc-hhhHHHHHHHHCCCcEEEeeeE
Q psy3650 351 L--RPG-VSDLTGSFRLYKKQVLENLVSSC-VSKGYV-FQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 351 ~--~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~-~D~el~lr~~~~G~~i~~~p~~ 405 (435)
. ..+ +.+.+-|..+.-|+-|-.+||++ +..+|+ ||++|.-+..+.|.++.-+|..
T Consensus 373 ~~~~tGfwRdfGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~p 432 (494)
T KOG3588|consen 373 IKKDTGFWRDFGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEP 432 (494)
T ss_pred eccccccccccCCceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCC
Confidence 0 011 23444445566677777887654 457775 9999999999999999998853
No 151
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.91 E-value=0.015 Score=50.05 Aligned_cols=164 Identities=9% Similarity=0.062 Sum_probs=90.4
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccC--CCC-CCHHHHHHHHHhhcc----CCEEEEEcCCCCCCC
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR--KKK-LGLGTAYMHGLKYAT----GNFIIIMDADLSHHP 75 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~--~~n-~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~ 75 (435)
++++.++||+++..+. -...++++....| ++.++.. ++. ..-+...|.|...+- .++|+|+|.|+..+.
T Consensus 34 ts~~~~~vi~~~~~~~--~d~~i~~~i~~~~--~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~ 109 (346)
T COG4092 34 TSSDITMVICLRAHEV--MDRLIRSYIDPMP--RVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS 109 (346)
T ss_pred cccccEEEEEEecchh--HHHHHHHHhcccc--ceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence 4567799999987663 2366778876544 5555522 222 233667888887775 799999999999998
Q ss_pred CcHHHHHHHHh----cCC--CcEEEEeeeecCCCcc-Ccccchhhhhc--hHHHHHHHHhCCC-ccccccceehhhHHHH
Q psy3650 76 KFIPEMIKLQQ----QEN--LDVVTGTRYVGTGGVY-GWDFKRKLVSR--GANYLTQLLLRPG-VSDLTGSFRLYKKQVL 145 (435)
Q Consensus 76 ~~l~~~~~~~~----~~~--~~~v~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 145 (435)
+..++++..++ ..+ +-.|+........... ...+....... ....+........ .....++..++.+.++
T Consensus 110 dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F 189 (346)
T COG4092 110 DNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMF 189 (346)
T ss_pred HHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhHH
Confidence 88888885442 122 2334433333322110 00000011000 0000111000000 1122355678999999
Q ss_pred HHhhccc--cccCchhhHHHHHHHHhh
Q psy3650 146 ENLVSSC--VSKGYVFQMEMVIRARQY 170 (435)
Q Consensus 146 ~~~~~~~--~~~~~~~d~~l~~r~~~~ 170 (435)
...|+.. +.....+|.|+..|+...
T Consensus 190 ~~tgGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 190 SLTGGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred HHhcCCccccccCCchhHHHHHHHHHH
Confidence 8885544 233446789999987553
No 152
>PLN02893 Cellulose synthase-like protein
Probab=96.83 E-value=0.011 Score=59.39 Aligned_cols=108 Identities=12% Similarity=0.071 Sum_probs=65.6
Q ss_pred eEEEccCCCC-----CCHHHHHHHHHhh----ccCCEEEEEcCCCCC-CCCcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650 36 KIVLKPRKKK-----LGLGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQE----NLDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n-----~g~~~a~n~gl~~----a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~----~~~~v~g~~~~~~ 101 (435)
.++|+..+.+ .-|+||+|.+++. +.|++|+.+|+|... +|+.+.+.+-.+.++ +..+|..++....
T Consensus 265 ~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~ 344 (734)
T PLN02893 265 NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHG 344 (734)
T ss_pred ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccC
Confidence 4666655544 4689999999995 679999999999974 688999998888654 4666776665443
Q ss_pred CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHH
Q psy3650 102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVL 145 (435)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (435)
-+... .+.. .....+......+-+.......|+..++||+++
T Consensus 345 i~~~D-~y~~-~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al 386 (734)
T PLN02893 345 INKND-IYAG-ELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVF 386 (734)
T ss_pred CCcCC-CCcc-hhHHHHHHHhhcccccCCceeeccceEEEHHHh
Confidence 22111 1111 111122222222223333333444567888888
No 153
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.82 E-value=0.0016 Score=45.94 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.5
Q ss_pred CccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeee
Q psy3650 354 GVSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 354 ~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~ 404 (435)
......||..+++|+.|.+++++++. .+++ ||.|++.|+..+|+++..+|.
T Consensus 15 ~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 15 PYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SST
T ss_pred cCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCC
Confidence 34456788899999999999887655 5653 999999999999999888664
No 154
>PLN02189 cellulose synthase
Probab=96.76 E-value=0.0041 Score=64.20 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=49.5
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCCC-CCccHHHHHHHHhcC----CCceEEeeeE
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQE----NLDVVTGTRY 323 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~~-~~~~l~~~~~~~~~~----~~~~v~~~~~ 323 (435)
.++++..+++.| |+.|+|..++. ++++||+.+|+|... ++..+.+.+-.+.++ +...|.-+..
T Consensus 499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQr 575 (1040)
T PLN02189 499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQR 575 (1040)
T ss_pred eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccc
Confidence 477777777777 88999999954 589999999999985 569999999888765 5566665553
No 155
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.60 E-value=0.16 Score=50.92 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=84.9
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP------- 266 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~------- 266 (435)
.+..||||+.||.-. +++-+. .--..++-||||.|++. |.. .+.+++++..-.. .+.+++
T Consensus 55 ~~~aivvp~k~e~~~---~~~gvl---~~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~-~~~~vhq~dp~~a 127 (694)
T PRK14502 55 KKMAIVLPIKDEDLK---VFEGVL---SGIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITHR-QAIVVHQKNPELA 127 (694)
T ss_pred hCcEEEEEcCCCchh---HHhhHh---hcCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhcC-ceEEEEcCCHHHH
Confidence 468999999998753 333333 34445789999999876 332 3344455432111 222222
Q ss_pred ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650 267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR 322 (435)
Q Consensus 267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~ 322 (435)
..-..||+-++-.|+..|+ .+||.|+|+|+.+|-. +.+-+..+. +.++.+|--.-
T Consensus 128 ~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~yaag~~~~~~~~~mvri~w 206 (694)
T PRK14502 128 NAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHFATGFNLAQSPYSMVRILW 206 (694)
T ss_pred HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHHHhhhcccCCCCeeEEEEe
Confidence 1123478888999988875 4999999999988744 444443332 23333332110
Q ss_pred EECC---Cc--eeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650 323 YVGT---GG--VYGWDFKRKLVSRGANYLTQLLLRPG 354 (435)
Q Consensus 323 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
.+.. ++ ...|...+...+++.+.+.+...+..
T Consensus 207 ~~kpk~~~~~~f~k~gr~s~~~n~~ln~l~s~~~~~e 243 (694)
T PRK14502 207 KYKPKLVGDLYFKRWGRVSEVTNKHLNHLISSKGKFE 243 (694)
T ss_pred cCCCcccceeEEeeccchhHHHHHHHHHHHHhccccc
Confidence 0000 11 22345566778888888877766653
No 156
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=96.54 E-value=0.0097 Score=50.80 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=94.2
Q ss_pred CCeEEEEEeCCCC--cc-hHHHHHHHHHHhCCceEEEecCCCCCC-HH----HHHHHHHhhcc-CCEEEEEeCCCCCCCc
Q psy3650 231 YPYEIIVIDDGSP--DG-TLDAAKQLQSIYGSEKIVLKPRKKKLG-LG----TAYMHGLKYAT-GNFIIIMDADLSHHPK 301 (435)
Q Consensus 231 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~----~a~n~g~~~a~-~d~v~~~d~D~~~~~~ 301 (435)
..+.++++-..+. +. ..+.+.+..+++.. ++.....+.+. .. .+++.+.+.+. .+|++.+|+|..+.++
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~D--il~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGD--ILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCc--eEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 4667777776555 32 33445555555554 33333333322 22 66667777775 7999999999999888
Q ss_pred cHHHHHHHH-hcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhccc--
Q psy3650 302 FIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-- 378 (435)
Q Consensus 302 ~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-- 378 (435)
.|...+... .......+.|........ .+.-.+++.-.........-...++|++.++++++++.+.....
T Consensus 97 ~l~~~L~~~~~~~~~~~~~g~~~~~~~~------~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~ 170 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSKNSIYGGCIKNGPP------IRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHT 170 (195)
T ss_pred HhhhhhhhcccCccccccccccccCCcc------ccccccCceeeeeecccccCCCcCCCCeEEecHHHHHHHHHHhhcC
Confidence 888777765 222333444433322111 11111111000011111223455789999999999999953322
Q ss_pred CcccchhhHHHHHHHHCCCcEEEee
Q psy3650 379 SKGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 379 ~~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
..-..+|.-+.+.+.+.|.+....|
T Consensus 171 ~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 171 PFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred CCCCchHHHHHHHHHHCCCCccCCC
Confidence 2222489999999999998866544
No 157
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=96.53 E-value=0.02 Score=49.91 Aligned_cols=174 Identities=10% Similarity=0.134 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 290 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~ 290 (435)
...+...++.+.+. . .-+|+|+-+...+...+.+. ... ..+.+.+.......|.+.++..+++....+.++
T Consensus 29 ~pli~~~l~~l~~~----g-~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~l 100 (223)
T cd06915 29 RPFLEYLLEYLARQ----G-ISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFL 100 (223)
T ss_pred cchHHHHHHHHHHC----C-CCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEE
Confidence 46677777766542 1 22677665433332222222 111 123444444455678888999999988778899
Q ss_pred EEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH---hcCCCccccccceeeecH
Q psy3650 291 IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKK 367 (435)
Q Consensus 291 ~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r 367 (435)
++++|..++ ..+..++..+++.+.+++.......+... +.... .... +.+... ..........+|+.+|++
T Consensus 101 v~~~D~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~d~~--~~v~~~~ek~~~~~~~~~~~Giy~~~~ 174 (223)
T cd06915 101 VLNGDTYFD-VDLLALLAALRASGADATMALRRVPDASR--YGNVT-VDGD--GRVIAFVEKGPGAAPGLINGGVYLLRK 174 (223)
T ss_pred EEECCcccC-CCHHHHHHHHHhCCCcEEEEEEECCCCCc--ceeEE-ECCC--CeEEEEEeCCCCCCCCcEEEEEEEECH
Confidence 999999775 45888888776666666554433222110 11100 0000 000000 000112345678899999
Q ss_pred HHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 368 QVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 368 ~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
++++.+... .+..-.++.-++...| ++..++.
T Consensus 175 ~~l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~~ 206 (223)
T cd06915 175 EILAEIPAD----AFSLEADVLPALVKRG-RLYGFEV 206 (223)
T ss_pred HHHhhCCcc----CCChHHHHHHHHHhcC-cEEEEec
Confidence 999887322 1222235666677777 7766554
No 158
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=96.30 E-value=0.05 Score=47.21 Aligned_cols=178 Identities=11% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~ 291 (435)
...+..+++.+... . .-+|+++-+...+...+.+.+... ....+..+..+...|.+.++..+++....+.+++
T Consensus 29 ~pli~~~l~~l~~~----g-~~~i~vv~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv 101 (217)
T cd04181 29 KPILEYIIERLARA----G-IDEIILVVGYLGEQIEEYFGDGSK--FGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLV 101 (217)
T ss_pred eeHHHHHHHHHHHC----C-CCEEEEEeccCHHHHHHHHcChhh--cCceEEEEeCCCCCccHHHHHHhhhhcCCCCEEE
Confidence 46677777766542 1 236777665433332222222110 1234555555556788999999999887789999
Q ss_pred EeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC---ccccccceeeecHH
Q psy3650 292 MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG---VSDLTGSFRLYKKQ 368 (435)
Q Consensus 292 ~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~ 368 (435)
+++|.....+ +.+++....+++.+++........... +.... .... +.+....-... -.....|..+|+++
T Consensus 102 ~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~d~~--~~v~~~~ek~~~~~~~~~~~Giy~~~~~ 175 (217)
T cd04181 102 VNGDVLTDLD-LSELLRFHREKGADATIAVKEVEDPSR--YGVVE-LDDD--GRVTRFVEKPTLPESNLANAGIYIFEPE 175 (217)
T ss_pred EECCeecCcC-HHHHHHHHHhcCCCEEEEEEEcCCCCc--ceEEE-EcCC--CcEEEEEECCCCCCCCEEEEEEEEECHH
Confidence 9999987665 666777666666666555443321111 11100 0000 00000000111 12346677899999
Q ss_pred HHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 369 VLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 369 ~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
+++.+..... ....+-.++.-.+.+. .++..+++
T Consensus 176 ~~~~l~~~~~-~~~~~~~~~~~~l~~~-~~v~~~~~ 209 (217)
T cd04181 176 ILDYIPEILP-RGEDELTDAIPLLIEE-GKVYGYPV 209 (217)
T ss_pred HHHhhhhcCC-cccccHHHHHHHHHhc-CCEEEEEc
Confidence 9866632211 2222334566666665 56666554
No 159
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=96.13 E-value=0.2 Score=42.93 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=92.4
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hC----CceEEEec------CCCCCC
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YG----SEKIVLKP------RKKKLG 272 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~----~~~i~~~~------~~~n~g 272 (435)
++|..+....+..+++.+.+. .--+++||-+...+...+ .+... .. ...+.++. .+...|
T Consensus 23 llpv~g~~pli~~~l~~l~~~-----gi~~iivv~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 94 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNS-----GIRNVGVLTQYKSRSLND---HLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRG 94 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHC-----CCCEEEEEeCCChHHHHH---HHhCCCcccCCCCCCCEEEeCcccCCCCCcccC
Confidence 566666535677777776541 123777776654333333 22211 00 00122222 234578
Q ss_pred HHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH
Q psy3650 273 LGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 349 (435)
Q Consensus 273 ~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
.+.++..|..... .+.++++.+|.. ....+.++++..++++.++.....
T Consensus 95 ta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~t~~~~--------------------------- 146 (200)
T cd02508 95 TADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADITVVYK--------------------------- 146 (200)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCEEEEEh---------------------------
Confidence 8999999988763 478899999985 445688999877665655554432
Q ss_pred hcCCCccccccceeeecHHHHHHhhhc-ccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650 350 LLRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
..+|..+|+++++.++... .......+..|+.-++.+. .++...+
T Consensus 147 --------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~ 192 (200)
T cd02508 147 --------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYE 192 (200)
T ss_pred --------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEE
Confidence 5677889999998766321 1122233456777777776 4665544
No 160
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=96.06 E-value=0.043 Score=49.17 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=65.9
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA 284 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a 284 (435)
.+|+.+. ..+...++.+.+. . ..-+|+|+-....+...+.+..... ...+.+.+....+..|.+.++..+....
T Consensus 25 llpv~g~-plI~~~l~~l~~~---~-gi~~i~iv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~Gt~~al~~a~~~l 98 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKV---P-DLKEVLLIGFYPESVFSDFISDAQQ-EFNVPIRYLQEYKPLGTAGGLYHFRDQI 98 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhc---C-CCcEEEEEecCCHHHHHHHHHhccc-ccCceEEEecCCccCCcHHHHHHHHHHh
Confidence 4555554 6777777766541 1 1226777755433333333332211 1233555555555778888887777664
Q ss_pred c---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee
Q psy3650 285 T---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 285 ~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
. .+.++++++|..... .+..+++..++.+.++++..
T Consensus 99 ~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~~~tl~~ 137 (257)
T cd06428 99 LAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGASGTILG 137 (257)
T ss_pred hccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCCCEEEEE
Confidence 2 477889999998665 48899987766666665443
No 161
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.03 E-value=0.027 Score=49.11 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcCCCCeEEEE-EeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCEEEE--
Q psy3650 218 IVYLITKYMDEGNYPYEIIV-IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIII-- 291 (435)
Q Consensus 218 ~l~~l~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~v~~-- 291 (435)
||.|+. .|+.+++..+| +++.+++.-.+.|.++.+..|+++++..+. .....++..++..+ .+++++.
T Consensus 47 ~LpSl~---~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~R 120 (234)
T PF11316_consen 47 CLPSLR---AQTDQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRPP---GPHRDAMRRAINAARRDGADPVLQFR 120 (234)
T ss_pred HhhHHH---hccCCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecCC---chHHHHHHHHHhhhccCCCCEEEEEE
Confidence 345554 47888988766 666777788899999999999777765432 22556677776433 3466555
Q ss_pred EeCCCCCCCccHHHHHHHHh
Q psy3650 292 MDADLSHHPKFIPEMIKLQQ 311 (435)
Q Consensus 292 ~d~D~~~~~~~l~~~~~~~~ 311 (435)
+|+|+.++.++++.+-....
T Consensus 121 LDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 121 LDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred ECCcchhhHHHHHHHHHHHH
Confidence 49999999999999998873
No 162
>PLN02917 CMP-KDO synthetase
Probab=96.02 E-value=0.13 Score=46.85 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=73.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEE--CCCceeccchh
Q psy3650 261 KIVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYV--GTGGVYGWDFK 335 (435)
Q Consensus 261 ~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~ 335 (435)
.++........|.+.+ ..|++... .|+++++++|.- ++++.|.++++.+.+.. +.+...... ......++...
T Consensus 110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~-~~iv~t~~~~~~~~~~~~ygrv 187 (293)
T PLN02917 110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDASDPNRV 187 (293)
T ss_pred EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC-CceEEEEeeecCHHHhcCCCce
Confidence 4443322334465555 46776553 589999999996 99999999999886533 333322211 11111111111
Q ss_pred HHHHHHHHH--HHHHH-h--------cCCCccccccceeeecHHHHHHhhhcc----cCcccchhhHHHHHHHHCCCcEE
Q psy3650 336 RKLVSRGAN--YLTQL-L--------LRPGVSDLTGSFRLYKKQVLENLVSSC----VSKGYVFQMEMVIRARQYNYTIG 400 (435)
Q Consensus 336 ~~~~~~~~~--~~~~~-~--------~~~~~~~~~~~~~~~~r~~~~~~~~~~----~~~~~~~D~el~lr~~~~G~~i~ 400 (435)
....+.-.. ++.+. . ..........|..+|+++.+..+.... +...|.+| + ++.+.|+++.
T Consensus 188 ~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtd--l--~~le~G~~i~ 263 (293)
T PLN02917 188 KCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQ--L--KVLENGYKMK 263 (293)
T ss_pred EEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHH--H--HHHhCCCceE
Confidence 000110000 00000 0 012234567888999999999653211 11222233 2 4789999998
Q ss_pred EeeeE
Q psy3650 401 EVPIS 405 (435)
Q Consensus 401 ~~p~~ 405 (435)
.++..
T Consensus 264 ~~~~~ 268 (293)
T PLN02917 264 VIKVD 268 (293)
T ss_pred EEEeC
Confidence 87764
No 163
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=95.99 E-value=0.039 Score=47.21 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=74.0
Q ss_pred eEEEccCCC--CCCHHHHHHHHHhhcc----CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCccc
Q psy3650 36 KIVLKPRKK--KLGLGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF 109 (435)
Q Consensus 36 ~i~~~~~~~--n~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 109 (435)
+|.++.+.+ ...+|..+|.|+..|. .|+++|-|-|..+..+.+.- ...+.+.-+..+.-
T Consensus 36 ~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~H~s~~~~------------ 100 (219)
T cd00899 36 RIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPRHLSVPLD------------ 100 (219)
T ss_pred EEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCeEEEEeec------------
Confidence 555554333 3568889999998885 37899999998776665331 11111111111110
Q ss_pred chhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcc-ccccCch-hhHHHHHHHHhhcceeEeeeeE
Q psy3650 110 KRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYV-FQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
.+....+.....||..+++++.+.++++. ....+|+ +|.|+..|+...|+++...+..
T Consensus 101 -------------~~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 101 -------------KFHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred -------------ccccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCc
Confidence 01112223344577889999999999444 4455775 7999999999999998776643
No 164
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=95.98 E-value=0.22 Score=44.18 Aligned_cols=182 Identities=13% Similarity=0.123 Sum_probs=88.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG 286 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~ 286 (435)
+....+..+++.+.+. ..-+|+|+-+ .+. +.+..... ++.+.....+...|.+.... ++... ..
T Consensus 25 ~Gkpll~~~l~~l~~~-----~i~~ivvv~~--~~~----i~~~~~~~-~~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~ 91 (245)
T PRK05450 25 GGKPMIVRVYERASKA-----GADRVVVATD--DER----IADAVEAF-GGEVVMTSPDHPSGTDRIAE-AAAKLGLADD 91 (245)
T ss_pred CCcCHHHHHHHHHHhc-----CCCeEEEECC--cHH----HHHHHHHc-CCEEEECCCcCCCchHHHHH-HHHhcCCCCC
Confidence 3455566666665442 1236666543 122 22222222 33555544444445443333 33322 45
Q ss_pred CEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECC-CceeccchhHHHHHHHHH--HHHHHhc-C---------
Q psy3650 287 NFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGT-GGVYGWDFKRKLVSRGAN--YLTQLLL-R--------- 352 (435)
Q Consensus 287 d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~--------- 352 (435)
+.++++++|. .++++.+.++++.+..++.++++......+ .........+-....-.. .+..... .
T Consensus 92 ~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~ 171 (245)
T PRK05450 92 DIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSA 171 (245)
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCcccccc
Confidence 8899999999 689999999999886655565555332211 000000000000000000 0000000 0
Q ss_pred CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 353 PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 353 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
........|..+|+++.++.+...........+....+++...|+++..+..
T Consensus 172 ~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 223 (245)
T PRK05450 172 PTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVV 223 (245)
T ss_pred CccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEe
Confidence 0123456678999999999884322111111122222467789999877654
No 165
>PLN02458 transferase, transferring glycosyl groups
Probab=95.94 E-value=0.068 Score=47.93 Aligned_cols=104 Identities=10% Similarity=0.052 Sum_probs=67.1
Q ss_pred CCcceEEEEeccC-CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCc-chHHHHHHHHHHhCCceEEEecCCCCCC---
Q psy3650 198 VKNKYTVLLPTYN-EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLG--- 272 (435)
Q Consensus 198 ~~~~isivip~~n-~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g--- 272 (435)
..+.|-||.|+|. +...... |..+...+..-.+++..|||+|+..- .+.++|++. ++..+.+..+.|..
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a~-LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrs-----Gl~y~HL~~k~~~~~~~ 183 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGVL-LRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKT-----GIMYRHLVFKENFTDPE 183 (346)
T ss_pred CCceEEEECCCCCCcchhHHH-HHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHc-----CCceEEeccCCCCCCcc
Confidence 4566899999997 3433333 34455555555568899999987632 334444432 33455544444432
Q ss_pred --HHHHHHHHHhhcc----CCEEEEEeCCCCCCCccHHHHH
Q psy3650 273 --LGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMI 307 (435)
Q Consensus 273 --~~~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~ 307 (435)
...-+|.|+...+ .-+|.|.|+|+.++-+.+++|-
T Consensus 184 ~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 184 AELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred chhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 2355899998874 3788999999999988888864
No 166
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=95.82 E-value=0.014 Score=60.55 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=47.9
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcCC----CceEEeeeE
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQEN----LDVVTGTRY 323 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~----~~~v~~~~~ 323 (435)
.++++.++++.| |+.|+|..++. ++++||+.+|+|.. -+|..+.+.+-.+.+++ ...|.-+..
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQr 593 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQR 593 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcc
Confidence 346666666666 88999999964 48999999999997 45999999999887654 446665543
No 167
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=95.73 E-value=0.11 Score=44.36 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=66.1
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhCCceEEEecCCCC-------
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYGSEKIVLKPRKKK------- 270 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~i~~~~~~~n------- 270 (435)
|.|-+|.|+|........+. .+...+..-. ++.-|||+|+.. +.+.++|++. ++..+.+..+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~Lt-RLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~ 73 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELT-RLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLK 73 (223)
T ss_pred CeEEEECCCCccchhhHHHH-HHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCC
Confidence 45789999998877665543 4444455444 899999999872 3455555543 334444433322
Q ss_pred CCHHHHHHHHHhhcc-------CCEEEEEeCCCCCCCccHHHHH
Q psy3650 271 LGLGTAYMHGLKYAT-------GNFIIIMDADLSHHPKFIPEMI 307 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~-------~d~v~~~d~D~~~~~~~l~~~~ 307 (435)
.-....+|.|++..+ .-+|.|.|+|+.++-+.+++|-
T Consensus 74 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 74 PRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred cccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 112367888888763 2578999999999988888854
No 168
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=95.69 E-value=0.079 Score=43.47 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=69.6
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNF 288 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~ 288 (435)
+....++.+++.+.+.- .-+|+|+-.. +. ....+ .. .++.++.-+ ....|...++..|+... ..+.
T Consensus 22 ~g~~li~~~l~~l~~~~-----~~~Ivvv~~~--~~---~~~~~-~~-~~~~~v~~~-~~~~G~~~sl~~a~~~~~~~~~ 88 (160)
T PF12804_consen 22 GGKPLIERVLEALREAG-----VDDIVVVTGE--EE---IYEYL-ER-YGIKVVVDP-EPGQGPLASLLAALSQLPSSEP 88 (160)
T ss_dssp TTEEHHHHHHHHHHHHT-----ESEEEEEEST--HH---HHHHH-TT-TTSEEEE-S-TSSCSHHHHHHHHHHTSTTSSE
T ss_pred CCccHHHHHHHHhhccC-----CceEEEecCh--HH---HHHHH-hc-cCceEEEec-cccCChHHHHHHHHHhcccCCC
Confidence 66677888888876641 1278777655 22 22222 22 233444432 23589999999999998 8899
Q ss_pred EEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeee
Q psy3650 289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTR 322 (435)
Q Consensus 289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~ 322 (435)
++++.+|.. ++++.+..++..+.+.+.++++...
T Consensus 89 vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 89 VLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp EEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 999999995 7999999999999877777776543
No 169
>KOG1413|consensus
Probab=95.64 E-value=0.15 Score=46.03 Aligned_cols=188 Identities=17% Similarity=0.135 Sum_probs=110.9
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCC--------ceEEEecCC
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS--------EKIVLKPRK 268 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--------~~i~~~~~~ 268 (435)
...|.+.|++-+.|..+.++++++.+..+- .....+.|||.-||...++.+.++.+...... ..+.+.+..
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~ 142 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRH 142 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcc
Confidence 346778899999999899999998887653 23345788999999998988888877544321 123333322
Q ss_pred CCCC--------HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH--hcCCCceEEeeeEECCCceeccchhHHH
Q psy3650 269 KKLG--------LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ--QQENLDVVTGTRYVGTGGVYGWDFKRKL 338 (435)
Q Consensus 269 ~n~g--------~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 338 (435)
+... +..|+|+.+...+.+.+++..+|.-+.|+++.-+.... .+..--+-+-+....|+.....
T Consensus 143 ~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWNDNGk~~~I------ 216 (411)
T KOG1413|consen 143 KKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWNDNGKKQTI------ 216 (411)
T ss_pred cccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeeccCCCcccc------
Confidence 2222 12455555555567999999999999999888877643 2333333333333444331100
Q ss_pred HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcE
Q psy3650 339 VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI 399 (435)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i 399 (435)
-..- ...++..++.. |-..|+.++.++++-. .+..+|. |-+|-....++|-.-
T Consensus 217 d~~~----~~~lYRtDFFp--GLGWml~~~~W~ELsp-~wP~~fW-DDWmr~pe~rK~R~c 269 (411)
T KOG1413|consen 217 DSTR----PSLLYRTDFFP--GLGWMLTKKLWEELSP-KWPVAFW-DDWMRIPENRKGRQC 269 (411)
T ss_pred cccc----cchhhhccccc--cchHHHHHHHHHhhCC-CCcccch-hhhhhchhhhccccc
Confidence 0000 01122222222 2236899999999843 2344554 656665566655443
No 170
>PLN02195 cellulose synthase A
Probab=95.58 E-value=0.02 Score=58.93 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=45.7
Q ss_pred EEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhcC----CCceEEeeeEE
Q psy3650 262 IVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQE----NLDVVTGTRYV 324 (435)
Q Consensus 262 i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~----~~~~v~~~~~~ 324 (435)
++++.++++.| |+.|+|.+++.+ +++||+.+|+|.. .+++.+.+.+-.+.++ +...|.-+...
T Consensus 421 LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F 497 (977)
T PLN02195 421 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRF 497 (977)
T ss_pred eEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCccc
Confidence 44455554444 779999999854 6899999999987 4457999988888765 34566665543
No 171
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=95.49 E-value=0.36 Score=44.85 Aligned_cols=209 Identities=9% Similarity=-0.008 Sum_probs=119.1
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH--H----------------HHHHHHH--------
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL--D----------------AAKQLQS-------- 255 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~-------- 255 (435)
|=|.|.+|...+ +..+|..+.+....+ ..+-|-|++-...++.. . ....+..
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~~P-~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARATNP-ERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP 79 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcCCC-ceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence 557899998754 666676665543322 34666666533222111 0 0111111
Q ss_pred ------HhCCceEEEecCCCCCCHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhc--CCCceEEeeeEECC
Q psy3650 256 ------IYGSEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQ--ENLDVVTGTRYVGT 326 (435)
Q Consensus 256 ------~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~--~~~~~v~~~~~~~~ 326 (435)
...+++++.++..+-.|...|+..+...=++ +|++.+|+...+.++|=+.|++.++. ++..+.+......+
T Consensus 80 ~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~ 159 (343)
T PF11397_consen 80 DGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYE 159 (343)
T ss_pred cccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcc
Confidence 1235677777788888999999999998765 99999999999999999988887753 22333332221111
Q ss_pred C----ceeccch-----hHHHHHHHHHHH-HHH-----h--cCCCccccccceeeecHHHHHHhhhcccC--cccchhhH
Q psy3650 327 G----GVYGWDF-----KRKLVSRGANYL-TQL-----L--LRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGYVFQME 387 (435)
Q Consensus 327 ~----~~~~~~~-----~~~~~~~~~~~~-~~~-----~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~D~e 387 (435)
. ....... ...+...+.-.+ ... . .........+||..-+-++++++-..+.. .-.+|++-
T Consensus 160 ~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eVP~DP~lp~lF~GEE~~ 239 (343)
T PF11397_consen 160 PDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREVPYDPHLPFLFDGEEIS 239 (343)
T ss_pred cccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecCCCCCCcccccccHHHH
Confidence 1 0000000 000000000000 000 0 11123345777766677777777433333 33458899
Q ss_pred HHHHHHHCCCcEEEeeeEEeecccc
Q psy3650 388 MVIRARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 388 l~lr~~~~G~~i~~~p~~~~~~~~~ 412 (435)
+..|+--+||.+...+.....|...
T Consensus 240 ~aaRlwT~GYD~Y~P~~~v~~H~Y~ 264 (343)
T PF11397_consen 240 MAARLWTHGYDFYSPTRNVLFHLYS 264 (343)
T ss_pred HHHHHHHcCCccccCCCceeEEEcc
Confidence 9999999999998888766655444
No 172
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=95.47 E-value=0.12 Score=45.66 Aligned_cols=95 Identities=19% Similarity=0.265 Sum_probs=59.5
Q ss_pred CCCCCC---eEEEEEeCCCC--cChHHHHHHHHHHh--------CCceEEEccCCCC----------C----------CH
Q psy3650 2 DEGNYP---YEIIVIDDGSP--DGTLDAAKQLQSIY--------GSEKIVLKPRKKK----------L----------GL 48 (435)
Q Consensus 2 ~~~~~~---~EiivvDd~S~--d~t~~i~~~~~~~~--------~~~~i~~~~~~~n----------~----------g~ 48 (435)
..++|| +++=.+-+.|+ |.|.+.+++..++. +..+|.+++..-. . -.
T Consensus 48 ~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~m 127 (269)
T PF03452_consen 48 LSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAM 127 (269)
T ss_pred HhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHH
Confidence 345676 66644445566 77877777554332 1234555533211 0 14
Q ss_pred HHHHHHHHhhccC---CEEEEEcCCCC-CCCCcHHHHHHHHhcCCCcEEEEeeeec
Q psy3650 49 GTAYMHGLKYATG---NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVG 100 (435)
Q Consensus 49 ~~a~n~gl~~a~g---d~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~v~g~~~~~ 100 (435)
+.+||..+..|-+ +||+++|+|.. .+|..|+.|++ ++.|+|+...+..
T Consensus 128 AraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIivPn~~~~ 179 (269)
T PF03452_consen 128 ARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIVPNCWRR 179 (269)
T ss_pred HHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEccceeec
Confidence 5677777777754 89999999995 45555566655 8889998876655
No 173
>PLN02248 cellulose synthase-like protein
Probab=95.34 E-value=0.019 Score=59.72 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=46.8
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHh----hccCCEEEEEeCCCC-CCCccHHHHHHHHhc---CCCceEEeeeE
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLK----YATGNFIIIMDADLS-HHPKFIPEMIKLQQQ---ENLDVVTGTRY 323 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~----~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~---~~~~~v~~~~~ 323 (435)
.++++..+++.| |+.|+|..++ .++++||+.+|+|.. .++..+.+.+-.+.+ ++...|.-+..
T Consensus 586 ~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQr 661 (1135)
T PLN02248 586 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQR 661 (1135)
T ss_pred eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcc
Confidence 455555555555 7899998887 458999999999997 666699998888866 45566665553
No 174
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=95.34 E-value=0.5 Score=41.70 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=88.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccC--C
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--N 287 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~--d 287 (435)
+....++..++.+.+. ..--+|+|+-+. + .+.++...+ ++.+.+.......|.+. ...+++.... |
T Consensus 24 ~gkpll~~~l~~l~~~----~~i~~ivvv~~~--~----~i~~~~~~~-~~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d 91 (239)
T cd02517 24 AGKPMIQHVYERAKKA----KGLDEVVVATDD--E----RIADAVESF-GGKVVMTSPDHPSGTDR-IAEVAEKLDADDD 91 (239)
T ss_pred CCcCHHHHHHHHHHhC----CCCCEEEEECCc--H----HHHHHHHHc-CCEEEEcCcccCchhHH-HHHHHHhcCCCCC
Confidence 4456677777766542 112266666431 2 233333322 34554433333345553 4445555544 8
Q ss_pred EEEEEeCCC-CCCCccHHHHHHHHhcC-CCceEEeeeEECCCc---eec-cchhHHHHHHHHHHHHHH-hc------CCC
Q psy3650 288 FIIIMDADL-SHHPKFIPEMIKLQQQE-NLDVVTGTRYVGTGG---VYG-WDFKRKLVSRGANYLTQL-LL------RPG 354 (435)
Q Consensus 288 ~v~~~d~D~-~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~-~~------~~~ 354 (435)
.++++++|. .++++.+..+++.+... +.++++......+.. ..+ +.....-..... .+... .. ...
T Consensus 92 ~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-~~~~~~~~~~~~~~~~~ 170 (239)
T cd02517 92 IVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYAL-YFSRSPIPYPRDSSEDF 170 (239)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEE-EecCCCCCCCCCCCCCC
Confidence 999999999 68899999999887654 565544332221100 000 000000000000 00000 00 001
Q ss_pred ccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650 355 VSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
.....+|+.+|+++.++.+...... .......++ +++.+.|+++..+.
T Consensus 171 ~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~v~~~~ 219 (239)
T cd02517 171 PYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQ-LRALENGYKIKVVE 219 (239)
T ss_pred ceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHH-HHHHHCCCceEEEE
Confidence 2346778899999999988432111 111112233 36778898876664
No 175
>KOG2571|consensus
Probab=95.28 E-value=0.064 Score=54.80 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHhhccC--CEEEEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCcc--CcccchhhhhchHH
Q psy3650 45 KLGLGTAYMHGLKYATG--NFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVY--GWDFKRKLVSRGAN 119 (435)
Q Consensus 45 n~g~~~a~n~gl~~a~g--d~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~ 119 (435)
..++--.++......+. +||.++|+|+.+.|+.+..|++.+.. +....++| +.....+.+ ...-.++.++....
T Consensus 423 w~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w~v~~Q~FEY~Ish~l~ 501 (862)
T KOG2571|consen 423 WNQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSWVVAYQNFEYAISHNLQ 501 (862)
T ss_pred HHHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCceEEeHHHHHHHHHHHHH
Confidence 33556667777777765 78899999999999999999999975 44555666 433332211 11112333444444
Q ss_pred HHHHHHhCCCccccccceehhhHHHHHHhh------------ccccccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650 120 YLTQLLLRPGVSDLTGSFRLYKKQVLENLV------------SSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
.....-++. +....|.|.+||-+++..-. .+.....+++|..|+.+...+|+++.+++..
T Consensus 502 Ka~ESvFG~-VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s 573 (862)
T KOG2571|consen 502 KATESVFGC-VSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAAS 573 (862)
T ss_pred Hhhhhhcee-EEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccc
Confidence 444444443 45556778899986663211 1124455788999999999999998776543
No 176
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=95.27 E-value=0.027 Score=50.46 Aligned_cols=110 Identities=15% Similarity=0.270 Sum_probs=67.1
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-hCCceE-EEecC--CCCCCH
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-YGSEKI-VLKPR--KKKLGL 273 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i-~~~~~--~~n~g~ 273 (435)
....+.||||+-+. .|...++.-+..++ .+++|||-|+-.....++.+.+.-. +..-.+ .++.. --.+.-
T Consensus 6 ~~~~~divi~~~~~--~l~~~~~~wr~~~~----~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~ 79 (348)
T PF03214_consen 6 LDDEVDIVIPALRP--NLTDFLEEWRPFFS----PYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKG 79 (348)
T ss_pred ccCcccEEeecccc--cHHHHHHHHHHhhc----ceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccc
Confidence 34579999999863 34444554444333 7899999998765544444333100 000000 01111 112224
Q ss_pred HHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC
Q psy3650 274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE 313 (435)
Q Consensus 274 ~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~ 313 (435)
.+.++.|+-.++-+|++++|+|+....+..-..++.+.++
T Consensus 80 ~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh 119 (348)
T PF03214_consen 80 DACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQH 119 (348)
T ss_pred cchhhhHhhhcccceEEEEccccccccCCccceehhhhcc
Confidence 5788999999999999999999997777776666666543
No 177
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.22 E-value=0.73 Score=39.92 Aligned_cols=171 Identities=14% Similarity=0.051 Sum_probs=89.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG 286 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~ 286 (435)
+....+..+++.+... ...-+|+||-+.... +....+........+.++.. ..|...++..|++.. ..
T Consensus 26 ~Gkpll~~~i~~l~~~----~~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~al~~~~~~~~ 96 (218)
T cd02516 26 GGKPVLEHTLEAFLAH----PAIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEG--GATRQDSVLNGLKALPDADP 96 (218)
T ss_pred CCeEHHHHHHHHHhcC----CCCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECC--chHHHHHHHHHHHhcccCCC
Confidence 3455666767666431 112266666543222 22222211111113334333 235678899999886 46
Q ss_pred CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCce-eccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650 287 NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL 364 (435)
Q Consensus 287 d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
++++++++|.- ++++.+.++++.+.+.+..+...+ ....-.. ........... ...+..++.. .+
T Consensus 97 ~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-----------r~~~~~~~~P-~~ 163 (218)
T cd02516 97 DIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVP-VTDTIKRVDDDGVVVETLD-----------REKLWAAQTP-QA 163 (218)
T ss_pred CEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEe-ccccEEEecCCCceeecCC-----------hHHhhhhcCC-Cc
Confidence 89999999985 999999999998865433222221 1110000 00000111111 1222233333 58
Q ss_pred ecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650 365 YKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 365 ~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
|+++.+.++.......++ +-+|..--+.+.|.++..++
T Consensus 164 f~~~~~~~~~~~~~~~~~-~~td~~~~~~~~~~~v~~v~ 201 (218)
T cd02516 164 FRLDLLLKAHRQASEEGE-EFTDDASLVEAAGGKVALVE 201 (218)
T ss_pred ccHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCCeEEEe
Confidence 999999998543222233 23455556788888887766
No 178
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.83 E-value=0.16 Score=42.68 Aligned_cols=100 Identities=13% Similarity=0.123 Sum_probs=61.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CC
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GN 287 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d 287 (435)
+....++.+++.+.+. ..-+|+||-+.... . ..+..... .+.+ +.......|...++..|++.+. .|
T Consensus 24 ~g~~li~~~i~~l~~~-----~~~~i~vv~~~~~~---~-~~~~~~~~-~~~~-~~~~~~~~G~~~~i~~al~~~~~~~~ 92 (186)
T cd04182 24 DGKPLLRHALDAALAA-----GLSRVIVVLGAEAD---A-VRAALAGL-PVVV-VINPDWEEGMSSSLAAGLEALPADAD 92 (186)
T ss_pred CCeeHHHHHHHHHHhC-----CCCcEEEECCCcHH---H-HHHHhcCC-CeEE-EeCCChhhCHHHHHHHHHHhccccCC
Confidence 4556667777766542 12267666443221 1 11221111 2222 2222234578899999999886 79
Q ss_pred EEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEe
Q psy3650 288 FIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 288 ~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
+++++.+|. .++++.+..+++.+.+++.++++.
T Consensus 93 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 126 (186)
T cd04182 93 AVLILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 999999999 488999999999886555555554
No 179
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=94.80 E-value=0.17 Score=44.26 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=60.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHh---CCceEEEccCCCCC-------------CHHHHHHHHHhhcc---------CC
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIY---GSEKIVLKPRKKKL-------------GLGTAYMHGLKYAT---------GN 62 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~---~~~~i~~~~~~~n~-------------g~~~a~n~gl~~a~---------gd 62 (435)
.=|-|+++||+|+|.+.++.+.... +-.+.+........ -.+..||++++--. -+
T Consensus 35 v~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd 114 (241)
T PF11735_consen 35 VFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFD 114 (241)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcC
Confidence 5677999999999999999998443 22122222110000 13678999985432 27
Q ss_pred EEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeee
Q psy3650 63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 98 (435)
Q Consensus 63 ~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~ 98 (435)
-|+|++ |..+.+..+-+++..-...+++++++.-+
T Consensus 115 ~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCamDf 149 (241)
T PF11735_consen 115 KVLFLN-DVFFCPEDILELLFTRNRGNYDMACAMDF 149 (241)
T ss_pred EEEEec-CcccCHHHHHHHHhhcCcccccchhhccc
Confidence 799999 77888888877777664467888877543
No 180
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=94.74 E-value=0.27 Score=48.47 Aligned_cols=170 Identities=11% Similarity=-0.021 Sum_probs=95.9
Q ss_pred CCCCeEEEEEeCCC-CcC-----hHHHHHHHHHHhCCceEEEccCC-CCCCHHHHHHHHHhhcc-CCEEEEEcCCCCCCC
Q psy3650 4 GNYPYEIIVIDDGS-PDG-----TLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHP 75 (435)
Q Consensus 4 ~~~~~EiivvDd~S-~d~-----t~~i~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~gl~~a~-gd~i~~lD~D~~~~~ 75 (435)
++.+.-++||..++ .|. ..+.++++..++|..++.++.-. ++...+.++..|+.... .+.++|.|-|..+++
T Consensus 277 ~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~ 356 (499)
T PF05679_consen 277 TDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTS 356 (499)
T ss_pred cCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCH
Confidence 35555566666554 332 23577888888888888888776 78889999999998655 589999999999999
Q ss_pred CcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH-HHHHHhCCCccccccceehhhHHHHHH--hhccc
Q psy3650 76 KFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY-LTQLLLRPGVSDLTGSFRLYKKQVLEN--LVSSC 152 (435)
Q Consensus 76 ~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 152 (435)
++|.++-....+ + --|+.+.....-++ .+...-....... ......+..-....|-..+|+.+.... -+...
T Consensus 357 ~fL~rcR~nti~-g-~qvy~PI~Fs~y~p---~~~~~~~~~~~~~~~i~~~~G~w~~~gfg~~~~YksDy~~~~~~~~~~ 431 (499)
T PF05679_consen 357 DFLNRCRMNTIP-G-KQVYFPIVFSQYNP---DIVYAGKPPEPDQFDISKDTGFWRRFGFGMVCFYKSDYMRIRGGGFDL 431 (499)
T ss_pred HHHHHHHHhhhc-C-cEEEEeeeccccCC---cccccCCCCccccCccCCCCCccccCCCceEEEEhhhhhhhccccccc
Confidence 999998765532 2 22333322110000 0000000000000 000000111111112233566666655 34444
Q ss_pred cccCc-hhhHHHHHHHHhhc--ceeEeee
Q psy3650 153 VSKGY-VFQMEMVIRARQYN--YTIGEVP 178 (435)
Q Consensus 153 ~~~~~-~~d~~l~~r~~~~g--~~~~~~~ 178 (435)
...+| .+|.+++-+..+.| +.+...+
T Consensus 432 ~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ 460 (499)
T PF05679_consen 432 SIRGWGGEDVDLYDKFLKSGHKLHVFRAV 460 (499)
T ss_pred ccccccccHHHHHHHHHhCCCceEEEEcc
Confidence 55666 45789999999998 6665543
No 181
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=94.73 E-value=0.18 Score=39.25 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=52.8
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
..+++||||.+|+++.|..+|..+...+......+.|+||.-. ....+.+|.-+|
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~-------------------------~~~~FNRg~L~N 100 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------DNGPFNRGKLMN 100 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE--------------------------SSS---HHHHHH
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeec-------------------------cCCCCchhhhhh
Confidence 5589999999999999999999998887766678888888522 122345677888
Q ss_pred HHHhhcc----CCEEEEEeCCCCC
Q psy3650 279 HGLKYAT----GNFIIIMDADLSH 298 (435)
Q Consensus 279 ~g~~~a~----~d~v~~~d~D~~~ 298 (435)
.|+..|. -|.++|=|-|...
T Consensus 101 vGf~eA~~~~~~dc~ifHDVDllP 124 (136)
T PF13733_consen 101 VGFLEALKDDDFDCFIFHDVDLLP 124 (136)
T ss_dssp HHHHHHHHHS--SEEEEE-TTEEE
T ss_pred HHHHHHhhccCCCEEEEecccccc
Confidence 8888773 4889999988763
No 182
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=94.39 E-value=0.81 Score=38.83 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHhhccCCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEE
Q psy3650 270 KLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
..|...++..|++....++++++++|. .++++.+..+++.+.+++..++.
T Consensus 73 ~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 123 (193)
T PRK00317 73 FPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW 123 (193)
T ss_pred CCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence 357778899999988889999999999 48999999999987654544443
No 183
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=94.28 E-value=0.34 Score=42.06 Aligned_cols=134 Identities=11% Similarity=0.129 Sum_probs=72.5
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhh-
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV- 114 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~- 114 (435)
.+.+.......|.+.++..|++....+.++++++|..++ ..+..+++...+.++++++......... .+...+.--
T Consensus 71 ~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~v~~d~~ 147 (223)
T cd06915 71 RIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDTYFD-VDLLALLAALRASGADATMALRRVPDAS--RYGNVTVDGD 147 (223)
T ss_pred eEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCcccC-CCHHHHHHHHHhCCCcEEEEEEECCCCC--cceeEEECCC
Confidence 444444456678888999999888778899999999775 4577888877666666655443221111 111100000
Q ss_pred hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeee
Q psy3650 115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP 178 (435)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~ 178 (435)
.+.. .+.............+|..+++++++..+... .+....++..++...| ++..++
T Consensus 148 ~~v~-~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~ 205 (223)
T cd06915 148 GRVI-AFVEKGPGAAPGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRG-RLYGFE 205 (223)
T ss_pred CeEE-EEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcC-cEEEEe
Confidence 0000 00000000012233467889999999876321 2222345555666556 654444
No 184
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=94.13 E-value=2 Score=39.14 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=82.8
Q ss_pred eEEEEEeCCCC---cC---hHHHHHHHHHHhCCceEEEccCCC---------------------CCCHHHHHHHHHhhcc
Q psy3650 8 YEIIVIDDGSP---DG---TLDAAKQLQSIYGSEKIVLKPRKK---------------------KLGLGTAYMHGLKYAT 60 (435)
Q Consensus 8 ~EiivvDd~S~---d~---t~~i~~~~~~~~~~~~i~~~~~~~---------------------n~g~~~a~n~gl~~a~ 60 (435)
--||||.|.+. |. -.+.++.|+.-..+.-+.++++.+ +-|||.++-.|+-.|+
T Consensus 77 c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk 156 (381)
T TIGR02460 77 CPIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAK 156 (381)
T ss_pred CeEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHH
Confidence 45788877655 32 235566666533232333332211 1388999998988876
Q ss_pred ---CCEEEEEcCCCCCCCCcHHHHHHHH------hcCCCcEEEEeeeecCCCccCcccc------hhhhhchHHHHHHHH
Q psy3650 61 ---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTRYVGTGGVYGWDFK------RKLVSRGANYLTQLL 125 (435)
Q Consensus 61 ---gd~i~~lD~D~~~~~~~l~~~~~~~------~~~~~~~v~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 125 (435)
.+||-|+|+|..++ +...+.+... .+.++.+|=-.+...+.-..+.-+. ..+.++..+.+....
T Consensus 157 ~~g~~YVGFiDaDNyiP-GaV~EYvk~yAaGf~ma~spy~MVRi~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~ 235 (381)
T TIGR02460 157 AIGAEYVGFVDADNYFP-GAVNEYVKIYAAGFLMATSPYSMVRIHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEH 235 (381)
T ss_pred HhCCceEeEeecccCCC-chHHHHHHHHHhhhcccCCCCeeEEEEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHhh
Confidence 39999999999654 4444444333 1234444432221111111111111 122223222222222
Q ss_pred hCCC---ccccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcce
Q psy3650 126 LRPG---VSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNYT 173 (435)
Q Consensus 126 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~~ 173 (435)
.+.. +....+|=.++++++++.+ ++..+|..+ .++...+-+.|..
T Consensus 236 ~gfet~ii~TGnAGEhAmt~~La~~l---~f~tGYaVEp~~lvdlle~~G~~ 284 (381)
T TIGR02460 236 TGFETDIIKTGNAGEHALTMKLAEIL---PFSSGYSVEPYELVYILERFGGW 284 (381)
T ss_pred ccccCcceecccchhhhhhHHHHhhC---CCCCCccccHHHHHHHHHHhcCc
Confidence 2221 1122455668999999998 556777766 4444444555543
No 185
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=94.10 E-value=0.13 Score=45.43 Aligned_cols=167 Identities=11% Similarity=0.031 Sum_probs=87.7
Q ss_pred eEEEEec-cCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q psy3650 202 YTVLLPT-YNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHG 280 (435)
Q Consensus 202 isivip~-~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g 280 (435)
++++|.+ |++...|.++++.+. ....--+|+||=++....... ...... .+.+.++..+.| .-.++-.-
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~----~~~~l~~IvVvWn~~~~~P~~--~~~~~~--~vpV~~~~~~~n--sLnnRF~p 70 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLA----SSPSLRKIVVVWNNPNPPPPS--SKWPST--GVPVRVVRSSRN--SLNNRFLP 70 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHT----TSTTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSH--HGGGGGS-
T ss_pred CEEEEEecccchHHHHHHHHHHH----cCCCCCeEEEEeCCCCCCCcc--cccCCC--CceEEEEecCCc--cHHhcCcC
Confidence 4788999 877776766666552 222334777776653222111 222222 245666554332 22444445
Q ss_pred HhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee-eEE-C--CCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650 281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYV-G--TGGVYGWDFKRKLVSRGANYLTQLLLRPGVS 356 (435)
Q Consensus 281 ~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
....+++.|+.+|+|..++.+.|+-..+.+++.+.-+|+.. |.. . .++.+.+.. .....+.
T Consensus 71 ~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~---------------~~~~~yS 135 (247)
T PF09258_consen 71 DPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTS---------------EWSNEYS 135 (247)
T ss_dssp -TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE----------------SSS--BS
T ss_pred ccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCcccccccc---------------CCCCcch
Confidence 55678999999999999999999999999987776666532 222 1 122221111 2233455
Q ss_pred ccccceeeecHHHHHHhhhc-c-------cCcccchhhHHHHHHH
Q psy3650 357 DLTGSFRLYKKQVLENLVSS-C-------VSKGYVFQMEMVIRAR 393 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~-~-------~~~~~~~D~el~lr~~ 393 (435)
.+..++..++|..++..-.. . ....-+||.-|-....
T Consensus 136 mvLt~aaf~h~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 136 MVLTGAAFYHRYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp EE-TTEEEEETHHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred hhhhhhHhhcchHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 56667788999888776321 0 1123347777766643
No 186
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=94.01 E-value=0.62 Score=40.94 Aligned_cols=182 Identities=10% Similarity=0.111 Sum_probs=93.9
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|+.+. ..+..+++.+.+. . --+|+|+-....+...+.+.++.. ...+.+.........|.+.++..+.....
T Consensus 26 lpv~g~-pli~~~l~~l~~~----g-~~~v~iv~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~G~~~al~~a~~~~~ 98 (233)
T cd06425 26 VEFCNK-PMIEHQIEALAKA----G-VKEIILAVNYRPEDMVPFLKEYEK-KLGIKITFSIETEPLGTAGPLALARDLLG 98 (233)
T ss_pred CeECCc-chHHHHHHHHHHC----C-CcEEEEEeeeCHHHHHHHHhcccc-cCCeEEEeccCCCCCccHHHHHHHHHHhc
Confidence 344443 6677777776542 1 226666654433333444433211 12345555444556788899999888765
Q ss_pred C--CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC--C-cccccc
Q psy3650 286 G--NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP--G-VSDLTG 360 (435)
Q Consensus 286 ~--d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 360 (435)
. +-++++++|.....+ +..+++..++.+.++++.......... +.+...-... ..+....-.. . -....+
T Consensus 99 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~~d~~~--~~v~~~~ekp~~~~~~~~~~ 173 (233)
T cd06425 99 DDDEPFFVLNSDVICDFP-LAELLDFHKKHGAEGTILVTKVEDPSK--YGVVVHDENT--GRIERFVEKPKVFVGNKINA 173 (233)
T ss_pred cCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCCEEEEEEEcCCccc--cCeEEEcCCC--CEEEEEEECCCCCCCCEEEE
Confidence 3 446777999877655 688888777666665554432222111 1111000000 0000000010 1 122456
Q ss_pred ceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 361 SFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 361 ~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
|..+|++++++.+... ......|+.-.+.+.| ++...+.
T Consensus 174 Giyi~~~~~l~~l~~~----~~~~~~~~~~~l~~~~-~v~~~~~ 212 (233)
T cd06425 174 GIYILNPSVLDRIPLR----PTSIEKEIFPKMASEG-QLYAYEL 212 (233)
T ss_pred EEEEECHHHHHhcccC----cccchhhhHHHHHhcC-CEEEEee
Confidence 7889999999887321 1112345555566554 6665554
No 187
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.95 E-value=1.3 Score=39.00 Aligned_cols=183 Identities=10% Similarity=0.057 Sum_probs=94.1
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+ ...+..+++.+.+. . --+|+++-....+...+.+++.. . -+..+.++......|.+.++..|.....
T Consensus 26 ~~i~g-~~li~~~l~~l~~~----~-~~~i~vv~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~g~~~sl~~a~~~i~ 97 (236)
T cd04189 26 IPVAG-KPIIQYAIEDLREA----G-IEDIGIVVGPTGEEIKEALGDGS-R-FGVRITYILQEEPLGLAHAVLAARDFLG 97 (236)
T ss_pred eEECC-cchHHHHHHHHHHC----C-CCEEEEEcCCCHHHHHHHhcchh-h-cCCeEEEEECCCCCChHHHHHHHHHhcC
Confidence 44444 36777777776542 1 22676665543333333332211 1 1234555555556788899999988875
Q ss_pred CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccccce
Q psy3650 286 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLTGSF 362 (435)
Q Consensus 286 ~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 362 (435)
.+-++++.+|..+..+ +.+++..+...+.+++.+.....+... +.... . .. ..+....- ...-.....|+
T Consensus 98 ~~~~li~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~-d~--~~v~~~~ek~~~~~~~~~~~Gi 170 (236)
T cd04189 98 DEPFVVYLGDNLIQEG-ISPLVRDFLEEDADASILLAEVEDPRR--FGVAV-V-DD--GRIVRLVEKPKEPPSNLALVGV 170 (236)
T ss_pred CCCEEEEECCeecCcC-HHHHHHHHHhcCCceEEEEEECCCccc--ceEEE-E-cC--CeEEEEEECCCCCCCCEEEEEE
Confidence 4345558899888665 666777665556665444322221110 00000 0 00 00000000 00112345667
Q ss_pred eeecHHHHHHhhhcccC--cccchhhHHHHHHHHCCCcEEEeee
Q psy3650 363 RLYKKQVLENLVSSCVS--KGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 363 ~~~~r~~~~~~~~~~~~--~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
.+|+.++++.+-..... ..+. -.++.-++.+.|.++..++.
T Consensus 171 y~~~~~~~~~l~~~~~~~~~~~~-~~d~~~~~i~~g~~v~~~~~ 213 (236)
T cd04189 171 YAFTPAIFDAISRLKPSWRGELE-ITDAIQWLIDRGRRVGYSIV 213 (236)
T ss_pred EEeCHHHHHHHHhcCCCCCCeEE-HHHHHHHHHHcCCcEEEEEc
Confidence 89999998876211111 1122 24677778888888776665
No 188
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=93.91 E-value=0.94 Score=39.36 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred CHHHHHHHHHhhcc-----CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH----
Q psy3650 272 GLGTAYMHGLKYAT-----GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR---- 341 (435)
Q Consensus 272 g~~~a~n~g~~~a~-----~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---- 341 (435)
|...++..|++... .++++++++|.- ++++.+.++++.+...+.+.+++....... ++.......
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 153 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRF-----PWRALGLDDNGLE 153 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC-----cHHheeeccCCce
Confidence 56677888887653 389999999995 899999999998876666776665433321 111111000
Q ss_pred HHHH----HHHHhcCCCccccccceeeecHHHHHHh
Q psy3650 342 GANY----LTQLLLRPGVSDLTGSFRLYKKQVLENL 373 (435)
Q Consensus 342 ~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 373 (435)
.... ..+..-........|++.+++++.+.+.
T Consensus 154 ~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~ 189 (223)
T cd02513 154 PVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLES 189 (223)
T ss_pred eccCcccccCCcCCChhHeeECCEEEEEEHHHHHhc
Confidence 0000 0000111234456788899999988775
No 189
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=93.88 E-value=2.3 Score=38.97 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=63.0
Q ss_pred CHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHH------hcCCCcEEEEeeeecCCCccCcccchh-----
Q psy3650 47 GLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTRYVGTGGVYGWDFKRK----- 112 (435)
Q Consensus 47 g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~------~~~~~~~v~g~~~~~~~~~~~~~~~~~----- 112 (435)
|||.++-.|+-.|+ .+||-|+|+|..++ +...+.+... .+.++.+|=-.+...+.-..+.-+.++
T Consensus 144 GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAAGf~ma~spytMVRi~W~~KPKv~~~~lyF~k~GRvS 222 (393)
T PRK14503 144 GKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAAGFLMAESPYTMVRIHWRYKPKVTEDRLYFRKWGRVS 222 (393)
T ss_pred CcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHhhhcccCCCCceEEEEecCCCceecCeEEEecCcchh
Confidence 88999998888876 39999999999654 4444444333 134444443222111111111112222
Q ss_pred -hhhchHHHHHHHHhCCC--c-cccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcc
Q psy3650 113 -LVSRGANYLTQLLLRPG--V-SDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNY 172 (435)
Q Consensus 113 -~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~ 172 (435)
+.++..+.+.....+.. + ....+|=.++++++++.+ ++..+|..+ .++...+-+.|.
T Consensus 223 el~nr~LN~l~~~~~gf~t~li~TGNAGEhAmt~~La~~l---~f~tGY~VEp~~lvdlle~~Gg 284 (393)
T PRK14503 223 EITNRYLNQLISEYTGFETDIIKTGNAGEHAMTMKLAEIM---PFSTGYSIEPYEIVYLLEEYGG 284 (393)
T ss_pred HHHHHHHHHHHhhhccccccceecCCchhhHhhHHHHHhC---CCCCCccccHHHHHHHHHHhCC
Confidence 22222222222222221 1 222355568999999998 556777666 344434444444
No 190
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=93.86 E-value=0.23 Score=43.44 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=58.4
Q ss_pred CCCCCCeEEEE-EeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEE--EEcCCCCCCC
Q psy3650 2 DEGNYPYEIIV-IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFII--IMDADLSHHP 75 (435)
Q Consensus 2 ~~~~~~~Eiiv-vDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~--~lD~D~~~~~ 75 (435)
.|++.+|.++| +|+.+.+.-.+.++++.+..|..+++..+ ......++..++..+. +++++ -||+||-+..
T Consensus 53 ~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~ 129 (234)
T PF11316_consen 53 AQTDQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRP---PGPHRDAMRRAINAARRDGADPVLQFRLDDDDALHR 129 (234)
T ss_pred hccCCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecC---CchHHHHHHHHHhhhccCCCCEEEEEEECCcchhhH
Confidence 57888899888 55555555667888888878866666532 2235667777764443 45554 4599999999
Q ss_pred CcHHHHHHHHh
Q psy3650 76 KFIPEMIKLQQ 86 (435)
Q Consensus 76 ~~l~~~~~~~~ 86 (435)
++++++-+...
T Consensus 130 dFV~rlr~~a~ 140 (234)
T PF11316_consen 130 DFVARLRRAAA 140 (234)
T ss_pred HHHHHHHHHHH
Confidence 99999999873
No 191
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=93.83 E-value=1.2 Score=39.35 Aligned_cols=185 Identities=15% Similarity=0.116 Sum_probs=107.1
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
++|+|+. +-+.-.+..+... .--+|+||..-.+ ....+++.... -.+.+.+...++..|.+.|.-.|-+
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~a-----GI~dI~II~~~~~---~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~ 95 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLMLA-----GIRDILIVVGPED---KPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED 95 (286)
T ss_pred cceecCc-chhHhHHHHHHHc-----CCceEEEEecCCc---hhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHh
Confidence 4778864 3455556655431 1237777643322 22233333221 1457788888889999999999999
Q ss_pred hccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh---cCCCcccc
Q psy3650 283 YATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL---LRPGVSDL 358 (435)
Q Consensus 283 ~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 358 (435)
.... ++++++ +|+++.. .+.+++..+.+.+.+..+-.....+...++. ..+.... ...++. ...+-...
T Consensus 96 fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV---~e~d~~~--~v~~l~EKP~~P~SNlA 168 (286)
T COG1209 96 FVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGV---VEFDEDG--KVIGLEEKPKEPKSNLA 168 (286)
T ss_pred hcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceE---EEEcCCC--cEEEeEECCCCCCCcee
Confidence 9985 555555 5666555 7999998887655555554444444332111 0000000 111111 11111123
Q ss_pred ccceeeecHHHHHHhhhcccCccc-chhhHHHHHHHHCCCcEEEeeeE
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSKGY-VFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~~~-~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
..|+.+|+.++|+.+.....+.+- .|=+|..-.+.+.|+++......
T Consensus 169 vtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 169 VTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred EEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence 445689999999998544333333 36778888899999999998875
No 192
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=93.82 E-value=0.41 Score=41.39 Aligned_cols=61 Identities=11% Similarity=0.298 Sum_probs=44.4
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
.+.++......|.+.++..++.....+.++++++|.....+ +..+++...+.++++++...
T Consensus 71 ~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~ 131 (217)
T cd04181 71 NIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLD-LSELLRFHREKGADATIAVK 131 (217)
T ss_pred eEEEEeCCCCCccHHHHHHhhhhcCCCCEEEEECCeecCcC-HHHHHHHHHhcCCCEEEEEE
Confidence 45555445557889999999988877899999999987665 55666666566766665543
No 193
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=93.81 E-value=0.77 Score=39.89 Aligned_cols=171 Identities=9% Similarity=0.012 Sum_probs=87.2
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC-CCCCHHHHHHHHHhhc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLKYA 284 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~g~~~a 284 (435)
+|..+. ..+...++.+.+. . --+|+++-....+...+.+. ....++.+...... +..|.+.++..++...
T Consensus 25 lpi~g~-~li~~~l~~l~~~----g-i~~i~iv~~~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~ 95 (221)
T cd06422 25 VPVAGK-PLIDHALDRLAAA----G-IRRIVVNTHHLADQIEAHLG---DSRFGLRITISDEPDELLETGGGIKKALPLL 95 (221)
T ss_pred eeECCE-EHHHHHHHHHHHC----C-CCEEEEEccCCHHHHHHHHh---cccCCceEEEecCCCcccccHHHHHHHHHhc
Confidence 444444 6677777766542 1 22666665433233222222 21234456555554 4568889999999987
Q ss_pred cCCEEEEEeCCCCCCCccHHHHHHHHh--cCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccce
Q psy3650 285 TGNFIIIMDADLSHHPKFIPEMIKLQQ--QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSF 362 (435)
Q Consensus 285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (435)
..+.++++++|.....+ +..++.... ..+..+.+...........+ ... .... +.+....-.........|+
T Consensus 96 ~~~~~lv~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~-~d~~--~~v~~~~~~~~~~~~~~Gi 169 (221)
T cd06422 96 GDEPFLVVNGDILWDGD-LAPLLLLHAWRMDALLLLLPLVRNPGHNGVG--DFS-LDAD--GRLRRGGGGAVAPFTFTGI 169 (221)
T ss_pred CCCCEEEEeCCeeeCCC-HHHHHHHHHhccCCCceEEEEEEcCCCCCcc--eEE-ECCC--CcEeecccCCCCceEEEEE
Confidence 66889999999988766 555666553 33444444322222111100 000 0000 0000000011113356678
Q ss_pred eeecHHHHHHhhhcccCcccchhhHHHHHHHHCC
Q psy3650 363 RLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYN 396 (435)
Q Consensus 363 ~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G 396 (435)
.+|+++++..+... .+. -.++.-.+.+.|
T Consensus 170 yi~~~~~l~~l~~~----~~~-~~d~~~~l~~~~ 198 (221)
T cd06422 170 QILSPELFAGIPPG----KFS-LNPLWDRAIAAG 198 (221)
T ss_pred EEEcHHHHhhCCcC----ccc-HHHHHHHHHHcC
Confidence 89999999987321 111 124555566666
No 194
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=93.80 E-value=1.9 Score=38.08 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=66.1
Q ss_pred cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECC-Ccee---ccchhHHH------HHHH-H----HHHHH
Q psy3650 285 TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGT-GGVY---GWDFKRKL------VSRG-A----NYLTQ 348 (435)
Q Consensus 285 ~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~-~~~~---~~~~~~~~------~~~~-~----~~~~~ 348 (435)
..|+++++++|.- ++++.|.++++.+.+.+.++++......+ .... ........ +++. . .....
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~ 166 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAK 166 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccc
Confidence 4689999999996 99999999999986555666665433222 0000 00000000 0000 0 00000
Q ss_pred HhcCCC-ccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEeeeE
Q psy3650 349 LLLRPG-VSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 349 ~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
....+. ....+-|..+|+++++++..... ...+ .|..|. +|+.++|++|..+...
T Consensus 167 ~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~-~~~le~~e~leq-lr~le~g~~i~~~~~~ 224 (238)
T TIGR00466 167 RQTPVGDNLLRHIGIYGYRAGFIEEYVAWK-PCVLEEIEKLEQ-LRVLYYGEKIHVKIAQ 224 (238)
T ss_pred cccccccceeEEEEEEeCCHHHHHHHHhCC-CCcccccchhHH-HhhhhcCCceEEEEeC
Confidence 001111 12335567899999999985432 2222 244444 6899999999887753
No 195
>PLN02190 cellulose synthase-like protein
Probab=93.76 E-value=0.092 Score=52.90 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=42.0
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhc
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQ 312 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~ 312 (435)
.++++.++++.| |+.|+|.-++-+ ++.+|+-+|+|.. -+++.+.+.+-.+.+
T Consensus 253 ~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld 314 (756)
T PLN02190 253 HLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQ 314 (756)
T ss_pred eEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcC
Confidence 577777776666 779999998754 7899999999996 688888888877653
No 196
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=93.70 E-value=0.63 Score=40.37 Aligned_cols=178 Identities=11% Similarity=0.104 Sum_probs=91.1
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
+|..+. ..+..+++.+... ... +|+|+-+... +.++++.... ....+.++..+...|.+.++..+..
T Consensus 24 l~~~g~-pli~~~l~~l~~~----~~~-~iivv~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~- 92 (220)
T cd06426 24 LKVGGK-PILETIIDRFIAQ----GFR-NFYISVNYLA----EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPE- 92 (220)
T ss_pred CeECCc-chHHHHHHHHHHC----CCc-EEEEECccCH----HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHh-
Confidence 444443 5677777776542 112 6666654322 2223332211 1234555444445676777654443
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC-Cccccccce
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP-GVSDLTGSF 362 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (435)
...+.++++.+|... ...+..+++.++..+.+++........... +..... .. ..+....-.. .-....+|.
T Consensus 93 ~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~-d~---~~v~~~~ek~~~~~~~~~Gi 165 (220)
T cd06426 93 KPTDPFLVMNGDILT-NLNYEHLLDFHKENNADATVCVREYEVQVP--YGVVET-EG---GRITSIEEKPTHSFLVNAGI 165 (220)
T ss_pred hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCCCEEEEEEEcCCCCc--ceEEEE-CC---CEEEEEEECCCCCCeEEEEE
Confidence 336778889999755 456888998877666665554433221111 111100 00 0000000011 112345677
Q ss_pred eeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 363 RLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 363 ~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
.+|++++++.+.. ..+.+-.++.-.+.+.|.++...++.
T Consensus 166 y~~~~~~~~~i~~----~~~~~l~~~~~~~i~~~~~i~~~~~~ 204 (220)
T cd06426 166 YVLEPEVLDLIPK----NEFFDMPDLIEKLIKEGKKVGVFPIH 204 (220)
T ss_pred EEEcHHHHhhcCC----CCCcCHHHHHHHHHHCCCcEEEEEeC
Confidence 8999999987721 11122246677788888877766653
No 197
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=93.62 E-value=0.44 Score=39.92 Aligned_cols=94 Identities=12% Similarity=0.250 Sum_probs=62.0
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....++.+++.+.... -+|+|+-+...+. .. . .++.++. ......|...++..|++....+++
T Consensus 24 ~g~~ll~~~i~~l~~~~------~~iivv~~~~~~~----~~----~-~~~~~v~-~~~~~~G~~~si~~~l~~~~~~~v 87 (181)
T cd02503 24 GGKPLLEHVLERLKPLV------DEVVISANRDQER----YA----L-LGVPVIP-DEPPGKGPLAGILAALRAAPADWV 87 (181)
T ss_pred CCEEHHHHHHHHHHhhc------CEEEEECCCChHH----Hh----h-cCCcEee-CCCCCCCCHHHHHHHHHhcCCCeE
Confidence 45566777777765431 2677775433222 11 1 1233322 222456888999999999888999
Q ss_pred EEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650 290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
+++.+|.- ++++.+..+++.+ .++.++++.
T Consensus 88 lv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 88 LVLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred EEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 99999995 8999999999887 445555554
No 198
>KOG1476|consensus
Probab=93.52 E-value=0.59 Score=41.80 Aligned_cols=104 Identities=14% Similarity=0.141 Sum_probs=68.8
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhCCceEEEecCCCCCCH---
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYGSEKIVLKPRKKKLGL--- 273 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~--- 273 (435)
.|.|-||.|+|+....... |..+...+.+-. ++..|||.||+. ..+..++++- +...+.+..+.+.++
T Consensus 86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~V~-nLhWIVVEd~~~~~p~v~~~L~rt-----gl~ythl~~~t~~~~~~~ 158 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRLVP-NLHWIVVEDGEGTTPEVSGILRRT-----GLPYTHLVHKTPMGYKAR 158 (330)
T ss_pred CccEEEEcccccchhHHHH-HHHHHHHHhhcC-CeeEEEEecCCCCCHHHHHHHHHc-----CCceEEEeccCCCCCccc
Confidence 6789999999998865544 334555555544 899999999852 3455555543 233333334444443
Q ss_pred --HHHHHHHHhhcc---------CCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 274 --GTAYMHGLKYAT---------GNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 274 --~~a~n~g~~~a~---------~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
-.-+|.|++..+ .-+|.|-|+|+.++-+.+++ ++..
T Consensus 159 rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 159 RGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV 205 (330)
T ss_pred cchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence 367888887654 25778888889999888888 4444
No 199
>KOG2287|consensus
Probab=93.50 E-value=1.6 Score=40.85 Aligned_cols=194 Identities=11% Similarity=0.034 Sum_probs=112.3
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhc-C---CCCeEEEEEeCCCCcc--hHHHHHHHHHHhCCceEEEecCCCCCC-
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDE-G---NYPYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKKKLG- 272 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~-~---~~~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~~~~~~~n~g- 272 (435)
|.+-++|.+.-+.-.-++ .+++.--+ . ......+++-.-..+. ..+.+.+....+.. |++.....++.
T Consensus 95 ~~lLl~V~S~~~~farR~---aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygD--Ii~~df~Dty~n 169 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRN---AIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGD--IIQVDFEDTYFN 169 (349)
T ss_pred ceEEEEEecCCCCHHHHH---HHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCC--EEEEecccchhc
Confidence 567777776654433333 23332222 1 1335555555444432 23444444555554 44444444443
Q ss_pred HH----HHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHH
Q psy3650 273 LG----TAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT 347 (435)
Q Consensus 273 ~~----~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (435)
.. +.+..+...| ..+||+-.|+|..+.++.|..++....++..+...|....... ..|.-.++++-...
T Consensus 170 ltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~------p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 170 LTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAP------PIRDKTSKWYVPES 243 (349)
T ss_pred hHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCC------CCCCCCCCCccCHH
Confidence 11 5566666655 4799999999999998888888887645677888887665421 11111111111111
Q ss_pred HHhcCCCccccccceeeecHHHHHHhhhcccCcccc--hhhHHHHHHHHC-CCcEEEeee
Q psy3650 348 QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV--FQMEMVIRARQY-NYTIGEVPI 404 (435)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~D~el~lr~~~~-G~~i~~~p~ 404 (435)
......-...++|+..++++++.+.+........+. ||+-+..-+++. |.+-...+.
T Consensus 244 ~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred HCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 111223345678889999999999995433333333 788888888777 888777776
No 200
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=93.47 E-value=0.2 Score=49.01 Aligned_cols=86 Identities=19% Similarity=0.364 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCccCc---ccchhhhhchHHHHHHHHhCCCccccccc
Q psy3650 61 GNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGW---DFKRKLVSRGANYLTQLLLRPGVSDLTGS 136 (435)
Q Consensus 61 gd~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (435)
.||++.+|+|+.++|+.+..|+..+.+ +....++|--........-+ ...++..+.......+..++ .+.-..|+
T Consensus 202 ~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l~Ka~Es~fG-~VtCLPGc 280 (527)
T PF03142_consen 202 YEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHLQKAFESVFG-SVTCLPGC 280 (527)
T ss_pred eEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHHHHHHHHHhC-ceeecCCc
Confidence 499999999999999999999999965 44555666433322221111 22234444555555555555 45666677
Q ss_pred eehhhHHHHHH
Q psy3650 137 FRLYKKQVLEN 147 (435)
Q Consensus 137 ~~~~~~~~~~~ 147 (435)
|.+||-+++..
T Consensus 281 fsmyR~~a~~~ 291 (527)
T PF03142_consen 281 FSMYRISALMD 291 (527)
T ss_pred ceeeeeehhcc
Confidence 88888766554
No 201
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.38 E-value=0.43 Score=47.16 Aligned_cols=183 Identities=12% Similarity=0.200 Sum_probs=95.5
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+ ...+..+++.+.+. . .-+++++-....+ ++.+.+....+ .+.++..+...|.+.++..|+....
T Consensus 27 lpi~g-kpli~~~l~~l~~~----g-~~~iivvv~~~~~---~i~~~~~~~~~--~~~~~~~~~~~Gt~~si~~al~~l~ 95 (482)
T PRK14352 27 HTLAG-RSMLGHVLHAAAGL----A-PQHLVVVVGHDRE---RVAPAVAELAP--EVDIAVQDEQPGTGHAVQCALEALP 95 (482)
T ss_pred ceeCC-ccHHHHHHHHHHhc----C-CCcEEEEECCCHH---HHHHHhhccCC--ccEEEeCCCCCCcHHHHHHHHHHhc
Confidence 45444 44667777766542 1 2256555443222 22222222112 2333444555688888988988754
Q ss_pred ---CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------
Q psy3650 286 ---GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG------- 354 (435)
Q Consensus 286 ---~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 354 (435)
.+.++++++|. .+.++.+.++++..++.+.++.+......+....+.-... .. ..+....-...
T Consensus 96 ~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~---~~--g~V~~~~EKp~~~~~~~~ 170 (482)
T PRK14352 96 ADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRD---QD--GEVTAIVEQKDATPSQRA 170 (482)
T ss_pred cCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEEC---CC--CCEEEEEECCCCCHHHhh
Confidence 37899999998 5788899999998765555543322211111111000000 00 00000000000
Q ss_pred ccccccceeeecHHHHHHhhhcccC---cccchhhHHHHHHHHCCCcEEEeee
Q psy3650 355 VSDLTGSFRLYKKQVLENLVSSCVS---KGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
......|..+|+.+.|+++...... ....+=.|++-.+.+.|+++..++.
T Consensus 171 ~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~ 223 (482)
T PRK14352 171 IREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHA 223 (482)
T ss_pred cceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEec
Confidence 1123456789999999776321111 1112236888889999988877765
No 202
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=93.27 E-value=0.82 Score=39.93 Aligned_cols=176 Identities=13% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CCEE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFI 289 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v 289 (435)
...+..+++.+.+ .. .-++++|-.... +.+.++.... .+.++..+...|.+.++..|+.... .+.+
T Consensus 26 kpli~~~i~~l~~----~~-i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~v 93 (229)
T cd02540 26 KPMLEHVLDAARA----LG-PDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQALPALKDFEGDV 93 (229)
T ss_pred ccHHHHHHHHHHh----CC-CCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHHHHHhhccCCCeE
Confidence 4666666666544 11 236666553221 2233332221 2333445556788999999998765 6899
Q ss_pred EEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------ccccccc
Q psy3650 290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------VSDLTGS 361 (435)
Q Consensus 290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 361 (435)
+++++|. .+.+..+.++++...+.+.++++......+....+.-.... ..+ +....-... .....+|
T Consensus 94 li~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~----v~~~~ek~~~~~~~~~~~~~~~g 168 (229)
T cd02540 94 LVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDG-NGK----VLRIVEEKDATEEEKAIREVNAG 168 (229)
T ss_pred EEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcC-CCC----EEEEEECCCCChHHHhhceEEeE
Confidence 9999998 47888999999887665555544322221111010000000 000 000000000 1234667
Q ss_pred eeeecHHHHHHhhhc-cc---CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 362 FRLYKKQVLENLVSS-CV---SKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 362 ~~~~~r~~~~~~~~~-~~---~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
..+|+++.+.+.... .. ...+ +=.+..-.+.+.|.++..++..
T Consensus 169 iy~~~~~~~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~~~~~ 215 (229)
T cd02540 169 IYAFDAEFLFEALPKLTNNNAQGEY-YLTDIIALAVADGLKVAAVLAD 215 (229)
T ss_pred EEEEEHHHHHHHHHHcccccCCCcE-EHHHHHHHHHHCCCEEEEEEcC
Confidence 789998877664211 11 1122 2357777788899888877763
No 203
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=93.16 E-value=0.43 Score=39.02 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=49.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
..++.- .....|...++-.|+... ..++++++.+|. .++++.+..+++.+.+.+.++++...
T Consensus 60 ~~~v~~-~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 60 IKVVVD-PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SEEEE--STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ceEEEe-ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 444432 223589999999999999 889999999999 56999999999999877888887654
No 204
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=93.07 E-value=0.17 Score=45.16 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=61.5
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCc-eEEEccC--------CCCCCHHHHHHHHHhhc-cCCEEEEEcCCCCCCCCc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPR--------KKKLGLGTAYMHGLKYA-TGNFIIIMDADLSHHPKF 77 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~-~i~~~~~--------~~n~g~~~a~n~gl~~a-~gd~i~~lD~D~~~~~~~ 77 (435)
-|.||.=+.|+|+|.|++.+|++++|.- .+.+ +. .+......-.|.++... +.+|++=+|+|-+.++..
T Consensus 114 ~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Y-py~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~K 192 (347)
T PF06306_consen 114 DEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKY-PYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKK 192 (347)
T ss_pred hccEEEeecCCCCHHHHHHHHHHhCcccccccC-cchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHH
Confidence 4677777889999999999999999852 2221 11 11123445567777774 589999999999999987
Q ss_pred HHHHHHHHhcCCCcEEEEee
Q psy3650 78 IPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 78 l~~~~~~~~~~~~~~v~g~~ 97 (435)
|-...-.. ....++|.-+|
T Consensus 193 L~ksfY~p-k~~~~~v~YsR 211 (347)
T PF06306_consen 193 LYKSFYIP-KNDYDVVSYSR 211 (347)
T ss_pred Hhhhheee-ccccceEEecc
Confidence 75444333 45667776665
No 205
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=93.05 E-value=0.7 Score=39.08 Aligned_cols=85 Identities=18% Similarity=0.136 Sum_probs=52.7
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIK 83 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~ 83 (435)
-+|+||-... +...+.+.+.........+.+.. ....|.+.+.-.|++++ ..|+++++++|. .++++.+..+++
T Consensus 42 ~~i~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~ 119 (190)
T TIGR03202 42 SKVIVVIGEK-YAHLSWLDPYLLADERIMLVCCR-DACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLA 119 (190)
T ss_pred CcEEEEeCCc-cchhhhhhHhhhcCCCeEEEECC-ChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHH
Confidence 4677776443 22222222221111222333332 23347888899999876 369999999999 778899999999
Q ss_pred HHhcCCCcEEE
Q psy3650 84 LQQQENLDVVT 94 (435)
Q Consensus 84 ~~~~~~~~~v~ 94 (435)
.+.+.+.++++
T Consensus 120 ~~~~~~~~~~~ 130 (190)
T TIGR03202 120 LAKRRPDDYVA 130 (190)
T ss_pred HHhhCCCCEEE
Confidence 88655545444
No 206
>PLN02189 cellulose synthase
Probab=92.99 E-value=0.11 Score=54.10 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=65.1
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHh----hccCCEEEEEcCCCCCC-CCcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLK----YATGNFIIIMDADLSHH-PKFIPEMIKLQQQE----NLDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~----~a~gd~i~~lD~D~~~~-~~~l~~~~~~~~~~----~~~~v~g~~~~~~ 101 (435)
+++|+..+.+- -|++|+|..++ ...|+||+.+|+|.... |..+.+.+=.+.++ +..+|..++...+
T Consensus 499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~ 578 (1040)
T PLN02189 499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDG 578 (1040)
T ss_pred eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCC
Confidence 46666555443 48999999994 45689999999999774 58888888777654 4566777765543
Q ss_pred CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650 102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
-+... ++.... .-++.....-+-+...+...|+..++||+++-..
T Consensus 579 i~k~D-~Ygn~~-~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~ 623 (1040)
T PLN02189 579 IDTHD-RYANRN-TVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGY 623 (1040)
T ss_pred CCCCC-ccCCcc-ceeeeeeecccccCCCccccccCceeeeeeeecc
Confidence 32211 111111 1111112222223333334444457888888643
No 207
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=92.79 E-value=1.3 Score=37.20 Aligned_cols=97 Identities=9% Similarity=0.126 Sum_probs=60.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....+..+++.+... .-+|+|+-+... ... .....++.++.-..+...|...++..|+.....+++
T Consensus 25 ~g~pll~~~l~~l~~~------~~~ivv~~~~~~---~~~----~~~~~~~~~i~~~~~~~~g~~~si~~al~~~~~~~v 91 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ------VSDLAISANRNP---ERY----AQAGFGLPVVPDALADFPGPLAGILAGLRWAGTDWV 91 (186)
T ss_pred CCEEHHHHHHHHHHhh------CCEEEEEcCCCH---HHH----hhccCCCcEEecCCCCCCCCHHHHHHHHHhcCCCeE
Confidence 3455667777666432 126676654321 111 111112233321123457888999999998888999
Q ss_pred EEEeCCC-CCCCccHHHHHHHHhcCCCceEE
Q psy3650 290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
+++++|. .++++.+.++++.+.+.+.+++.
T Consensus 92 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 92 LTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred EEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 9999998 58999999999988654555555
No 208
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=92.73 E-value=1.5 Score=37.01 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=61.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG 286 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~ 286 (435)
+....++.+++.+.+ . ..-+++||-+...+. .+.+.+.......+.++.... ...|.+.++..|++.+ ..
T Consensus 24 ~g~~ll~~~i~~~~~----~-~~~~i~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~G~~~si~~gl~~~~~~~~ 96 (190)
T TIGR03202 24 GETTLGSASLKTALS----S-RLSKVIVVIGEKYAH-LSWLDPYLLADERIMLVCCRD-ACEGQAHSLKCGLRKAEAMGA 96 (190)
T ss_pred CCccHHHHHHHHHHh----C-CCCcEEEEeCCccch-hhhhhHhhhcCCCeEEEECCC-hhhhHHHHHHHHHHHhccCCC
Confidence 455556666654432 1 122677776543222 122222111112233333332 2457889999999976 46
Q ss_pred CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650 287 NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 287 d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
|+++++++|.- ++++.+..+++.+.+.+.+++.
T Consensus 97 d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~ 130 (190)
T TIGR03202 97 DAVVILLADQPFLTADVINALLALAKRRPDDYVA 130 (190)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE
Confidence 99999999995 9999999999987654445444
No 209
>KOG3917|consensus
Probab=92.56 E-value=0.15 Score=42.84 Aligned_cols=156 Identities=17% Similarity=0.226 Sum_probs=94.1
Q ss_pred cCCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650 194 SGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL 273 (435)
Q Consensus 194 ~~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~ 273 (435)
...+...++.+++|...+-+.+...+..+.+.+......-.|+|++-- | .+ .+..
T Consensus 68 ~~~aS~HklavlVPfRdRfEELl~FvPHM~~FL~rq~v~HHI~vlNQv--D----------------~f-------RFNR 122 (310)
T KOG3917|consen 68 QTGASYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQNVSHHILVLNQV--D----------------PF-------RFNR 122 (310)
T ss_pred ccCccceeEEEEechHHHHHHHHHhhHHHHHHHhhcCcceEEEEeecc--C----------------cc-------eech
Confidence 333456799999999977666666666666666655555566665310 0 11 2345
Q ss_pred HHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650 274 GTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 350 (435)
Q Consensus 274 ~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
++-+|.|+..|+ .||+++-|-|.. +.++..- +.-...|++....... .|.
T Consensus 123 AsLINVGf~eas~~~DYiaMhDVDLLPlN~el~Y---------~fP~~~gp~HiasP~l--HPk---------------- 175 (310)
T KOG3917|consen 123 ASLINVGFNEASRLCDYIAMHDVDLLPLNPELPY---------DFPGIGGPRHIASPQL--HPK---------------- 175 (310)
T ss_pred hhheecchhhhcchhceeeecccccccCCCCCCC---------CCCccCCcccccCccc--Cch----------------
Confidence 777888888875 599999999975 4433211 1111223222211110 000
Q ss_pred cCCCccccccceeeecHHHHHHhhhc-ccCcccc-hhhHHHHHHHHCCCcEEEee
Q psy3650 351 LRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYV-FQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~-~D~el~lr~~~~G~~i~~~p 403 (435)
..+...-||..+++++-++++.+. ....+++ ||.|+.+|+..+|..+..+.
T Consensus 176 --YHY~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRps 228 (310)
T KOG3917|consen 176 --YHYEKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPS 228 (310)
T ss_pred --hhhhhhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEeccc
Confidence 001112467789999999999553 3344554 89999999999999876544
No 210
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=92.55 E-value=4.3 Score=35.37 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhhc-cCCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650 272 GLGTAYMHGLKYA-TGNFIIIMDADLS-HHPKFIPEMIKLQQQEN 314 (435)
Q Consensus 272 g~~~a~n~g~~~a-~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~ 314 (435)
+.+.++..|+... ..|+++++++|.- ++++.+.++++.+.+.+
T Consensus 81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 4688888888876 5789999999985 99999999999886543
No 211
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=92.49 E-value=0.66 Score=44.22 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH-HHHHHHHHH
Q psy3650 271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK-LVSRGANYL 346 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 346 (435)
.|.+.|+..+..... .+.++++++|...+. .+.++++.....+.++.......+......+..... -..+... +
T Consensus 99 ~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~-~ 176 (380)
T PRK05293 99 KGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVE-F 176 (380)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEE-E
Confidence 688899988888764 478999999997655 567777765555555444322111111000000000 0000000 0
Q ss_pred HHHhcCCCccccccceeeecHHHHHHhhhcc---cCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
..............|..+|+++++.++.... ......+-.+++-.+.+.|.++...+.
T Consensus 177 ~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~ 237 (380)
T PRK05293 177 EEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPF 237 (380)
T ss_pred EeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEe
Confidence 0000011122345678899999987763211 111112224677777888888776654
No 212
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=92.29 E-value=0.32 Score=41.79 Aligned_cols=90 Identities=19% Similarity=0.306 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
..+.+.+.+++|.+. ..-|+++|-+|-. .+.++++..+++ ..+++.-+..+..+-+..+-.|.+.+.++ +
T Consensus 30 gr~ii~~~i~~L~~~-----gi~e~vvV~~g~~---~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-f 100 (239)
T COG1213 30 GREIIYRTIENLAKA-----GITEFVVVTNGYR---ADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-F 100 (239)
T ss_pred CeEeHHHHHHHHHHc-----CCceEEEEeccch---HHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-E
Confidence 445677777776542 3449999987754 345667777777 55666555544444467788888888888 7
Q ss_pred EEEeCCCCCCCccHHHHHHH
Q psy3650 290 IIMDADLSHHPKFIPEMIKL 309 (435)
Q Consensus 290 ~~~d~D~~~~~~~l~~~~~~ 309 (435)
+++++|..++|..+++++++
T Consensus 101 ii~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 101 ILVMSDHVYEPSILERLLEA 120 (239)
T ss_pred EEEeCCEeecHHHHHHHHhC
Confidence 88999999999999999975
No 213
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=92.19 E-value=1.8 Score=40.79 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=94.2
Q ss_pred eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCC-CCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 207 PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDG-SPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 207 p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
|.-+. ..+..++..+.+. . --+++++-.. ..+...+.+.+. ......+.++..+...|.+.++..+++...
T Consensus 26 pv~g~-pli~~~l~~l~~~----g-i~~i~vv~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~G~~~al~~a~~~l~ 97 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAEA----G-ITDIGIVVGPVTGEEIKEIVGEG--ERFGAKITYIVQGEPLGLAHAVYTARDFLG 97 (353)
T ss_pred EECCE-eHHHHHHHHHHHC----C-CCEEEEEeCCCCHHHHHHHHhcc--cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44444 6677777666542 1 2266666543 222222222210 111234445445556788999999988775
Q ss_pred CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccccce
Q psy3650 286 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLTGSF 362 (435)
Q Consensus 286 ~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 362 (435)
.+-++++.+|..++ ..+.++++.+.+++.++.+......+... +..... ... ..+....- ...-.....|.
T Consensus 98 ~~~~li~~gD~~~~-~~l~~l~~~~~~~~~d~ti~~~~~~~~~~--~g~~~~-~~~--~~v~~~~ekp~~~~~~~~~~Gi 171 (353)
T TIGR01208 98 DDDFVVYLGDNLIQ-DGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVL-EDG--KRILKLVEKPKEPPSNLAVVGL 171 (353)
T ss_pred CCCEEEEECCeecC-ccHHHHHHHHHhcCCCcEEEEEECCChhh--CeEEEE-cCC--CcEEEEEECCCCCCccceEEEE
Confidence 44456778998775 66888888776666665444322221110 111000 000 00000000 00112235567
Q ss_pred eeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 363 RLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 363 ~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
.+|++.+++.+..... ..+..+-.+++-.+.+.|.++...+..
T Consensus 172 y~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~ 215 (353)
T TIGR01208 172 YMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVT 215 (353)
T ss_pred EEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeC
Confidence 8999987776632111 111122356777788899888776653
No 214
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=92.18 E-value=5.8 Score=36.79 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=39.4
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL 253 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 253 (435)
.+.+.|||-++|+...|+.++++|.+. ..-...-+|+.=|.-.++.-++++.+
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~--~~I~~~llifSHd~~~~ein~~v~~I 82 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQA--RGIEEALLIFSHDFYSEEINDLVQSI 82 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHh--hCccceEEEEeccCChHHHHHHHHhC
Confidence 577999999999999999999999874 22334566666677666666666543
No 215
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=92.07 E-value=3.2 Score=39.16 Aligned_cols=182 Identities=11% Similarity=0.137 Sum_probs=104.1
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
+|.- ....++..++.+.+. .--|++++-.- ..+.++++... ...+++.+.......|.+.++..+.+.
T Consensus 27 lpI~-gkPii~~~l~~L~~~-----Gv~eivi~~~y----~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~ 96 (358)
T COG1208 27 LPIA-GKPLIEYVLEALAAA-----GVEEIVLVVGY----LGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDL 96 (358)
T ss_pred ceeC-CccHHHHHHHHHHHC-----CCcEEEEEecc----chHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHh
Confidence 3444 345667777766542 23377777222 23333333332 224578777788889999999999999
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC-----CCcccc
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR-----PGVSDL 358 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 358 (435)
..++-++++++|...+.+ +..+++..+++.................+ ....-... ......... ..-...
T Consensus 97 l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~G--vv~~~~~~--~~v~~f~ekp~~~~~~~~~i 171 (358)
T COG1208 97 LGGDDFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVLDPSEFG--VVETDDGD--GRVVEFREKPGPEEPPSNLI 171 (358)
T ss_pred cCCCcEEEEECCeeeccC-HHHHHHHHHhccCccEEEEEecCCCCcCc--eEEecCCC--ceEEEEEecCCCCCCCCceE
Confidence 988899999999999988 99999988765333333222222111000 00000000 001111111 111345
Q ss_pred ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
.+|..+|++++|+.+ .....+.+..|++-++.+.|.++.-.+..
T Consensus 172 n~Giyi~~~~v~~~i---~~~~~~~~~~~~~~~l~~~~~~v~~~~~~ 215 (358)
T COG1208 172 NAGIYIFDPEVFDYI---EKGERFDFEEELLPALAAKGEDVYGYVFE 215 (358)
T ss_pred EeEEEEECHHHhhhc---ccCCcccchhhHHHHHHhCCCcEEEEEeC
Confidence 778899999999944 22233333337888888888855555543
No 216
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=92.06 E-value=13 Score=36.66 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=53.6
Q ss_pred EEEEeCCC-CcChHHHHHHHHHHhCCceEEEccCCCCCCH-HHHHHHHHhhc------cCCEEEEEcCCCCCCCCcHHHH
Q psy3650 10 IIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL-GTAYMHGLKYA------TGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 10 iivvDd~S-~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~-~~a~n~gl~~a------~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
||||-||. +++..+.+++++. .++ .-+|.|. -+|+..|+... ..|-|+++++-..-|-.-+..+
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~-----~vi---~R~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~ 72 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCD-----KVI---QRENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM 72 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHH-----HhE---EeccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence 45555554 5555566666543 233 2467776 47788888764 3588999988776555679999
Q ss_pred HHHHhcCCCcEEEEee
Q psy3650 82 IKLQQQENLDVVTGTR 97 (435)
Q Consensus 82 ~~~~~~~~~~~v~g~~ 97 (435)
.+.+.+.++|+..-..
T Consensus 73 f~~~~~~~~DfwGlT~ 88 (498)
T PF05045_consen 73 FERMEARDVDFWGLTE 88 (498)
T ss_pred HHHhccCCCeEEeecC
Confidence 9999777888865443
No 217
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=91.98 E-value=2.5 Score=37.14 Aligned_cols=179 Identities=13% Similarity=0.089 Sum_probs=86.5
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 290 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~ 290 (435)
....+..+++.+.+ ...--+|+|+-+. +.. .++...+ ++++.........|.+ .+..++.....|.++
T Consensus 26 GkPli~~~i~~l~~----~~~~~~ivv~t~~--~~i----~~~~~~~-~~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~l 93 (238)
T PRK13368 26 GKPMIQHVYERAAQ----AAGVEEVYVATDD--QRI----EDAVEAF-GGKVVMTSDDHLSGTD-RLAEVMLKIEADIYI 93 (238)
T ss_pred CcCHHHHHHHHHHh----cCCCCeEEEECCh--HHH----HHHHHHc-CCeEEecCccCCCccH-HHHHHHHhCCCCEEE
Confidence 34455555655544 1112366666432 222 2333322 3355444333333444 455566665568999
Q ss_pred EEeCCC-CCCCccHHHHHHHHhcCCC-ceEEeeeEECCCce---ecc-chhHHHHHHHHHHHHH-Hh-cCCC---ccccc
Q psy3650 291 IMDADL-SHHPKFIPEMIKLQQQENL-DVVTGTRYVGTGGV---YGW-DFKRKLVSRGANYLTQ-LL-LRPG---VSDLT 359 (435)
Q Consensus 291 ~~d~D~-~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~-~~-~~~~---~~~~~ 359 (435)
++++|. .+.++.+.++++.+...+. +++........... ++. .....-..+...+... .. ..+. .....
T Consensus 94 v~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~n 173 (238)
T PRK13368 94 NVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDGESARYLKH 173 (238)
T ss_pred EEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCCCCCceeEE
Confidence 999998 5889999999998854443 43333321110000 000 0000000000000000 00 0111 22467
Q ss_pred cceeeecHHHHHHhhhcccCcc--cchhhHHHHHHHHCCCcEEEee
Q psy3650 360 GSFRLYKKQVLENLVSSCVSKG--YVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 360 ~~~~~~~r~~~~~~~~~~~~~~--~~~D~el~lr~~~~G~~i~~~p 403 (435)
+|+.+|++++|+.+... .... ..+..++. ++...|.++.-++
T Consensus 174 ~giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~g~~v~~~~ 217 (238)
T PRK13368 174 VGIYAFRRDVLQQFSQL-PETPLEQIESLEQL-RALEHGEKIRMVE 217 (238)
T ss_pred EEEEEeCHHHHHHHHcC-CCChhhhhhhHHHH-HHHHCCCceEEEE
Confidence 88999999999987331 1111 11222454 7777888776554
No 218
>PLN02458 transferase, transferring glycosyl groups
Probab=91.82 E-value=0.33 Score=43.72 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=47.0
Q ss_pred CCCeEEEEEeCCCC-cChHHHHHHHHHHhCCceEEEccCCCCC-----CHHHHHHHHHhhcc----CCEEEEEcCCCCCC
Q psy3650 5 NYPYEIIVIDDGSP-DGTLDAAKQLQSIYGSEKIVLKPRKKKL-----GLGTAYMHGLKYAT----GNFIIIMDADLSHH 74 (435)
Q Consensus 5 ~~~~EiivvDd~S~-d~t~~i~~~~~~~~~~~~i~~~~~~~n~-----g~~~a~n~gl~~a~----gd~i~~lD~D~~~~ 74 (435)
.+|.-+|||+|++. ..|.+++++. .+...++...+|. .....+|.||.+.+ .-+|.|.|+|..++
T Consensus 142 p~pL~WIVVEd~~~t~~va~lLrrs-----Gl~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYs 216 (346)
T PLN02458 142 PPPLLWIVVEGQSDSEEVSEMLRKT-----GIMYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYD 216 (346)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHc-----CCceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCccc
Confidence 34688999998762 2233444432 2334444333332 12466999999886 37999999999998
Q ss_pred CCcHHHHH
Q psy3650 75 PKFIPEMI 82 (435)
Q Consensus 75 ~~~l~~~~ 82 (435)
-+.+++|-
T Consensus 217 l~LFeEmR 224 (346)
T PLN02458 217 LDFFDEIR 224 (346)
T ss_pred HHHHHHHh
Confidence 87777743
No 219
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=91.80 E-value=0.18 Score=44.74 Aligned_cols=184 Identities=14% Similarity=0.213 Sum_probs=100.2
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
+|..+....+...++.+.+ .. .-++|+|-.+... +.+.+...... .+++.++..+...|.+.|+..+...
T Consensus 25 l~i~g~~pli~~~l~~l~~----~g-~~~ii~V~~~~~~---~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~ 96 (248)
T PF00483_consen 25 LPIGGKYPLIDYVLENLAN----AG-IKEIIVVVNGYKE---EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDF 96 (248)
T ss_dssp SEETTEEEHHHHHHHHHHH----TT-CSEEEEEEETTTH---HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHH
T ss_pred ceecCCCcchhhhhhhhcc----cC-CceEEEEEeeccc---ccccccccccccccccceeeecccccchhHHHHHHHHH
Confidence 4445554566676766654 12 2365555443322 22333333222 2356666677778999999999999
Q ss_pred ccCCE----EEEEeCCCCCCCccHHHHHHHHhcCCCc--eEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC---
Q psy3650 284 ATGNF----IIIMDADLSHHPKFIPEMIKLQQQENLD--VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG--- 354 (435)
Q Consensus 284 a~~d~----v~~~d~D~~~~~~~l~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 354 (435)
...+. ++++.+|...+. .+..+++...+.+.+ +.+...........+ ....- .. +.+.+..-...
T Consensus 97 i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~~d-~~--~~V~~~~EKP~~~~ 170 (248)
T PF00483_consen 97 IEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYG--VVEVD-ED--GRVIRIVEKPDNPN 170 (248)
T ss_dssp HTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSE--EEEEE-TT--SEEEEEEESCSSHS
T ss_pred hhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccce--eeeec-cc--eeEEEEeccCcccc
Confidence 87755 999999998777 688888877655542 333322222111100 00000 00 00011111111
Q ss_pred -ccccccceeeecHHHHHHhhh--cccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650 355 -VSDLTGSFRLYKKQVLENLVS--SCVSKGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 355 -~~~~~~~~~~~~r~~~~~~~~--~~~~~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
-....+|+.+|++++|..+.. ........+-.|+.-.+.+.|.++....
T Consensus 171 ~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~ 222 (248)
T PF00483_consen 171 ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFI 222 (248)
T ss_dssp HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEE
Confidence 123566778999999998832 1111222334677888889888775544
No 220
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=91.68 E-value=7.2 Score=34.10 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhhcc-CCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650 272 GLGTAYMHGLKYAT-GNFIIIMDADLS-HHPKFIPEMIKLQQQEN 314 (435)
Q Consensus 272 g~~~a~n~g~~~a~-~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~ 314 (435)
+...++..|+.... .++++++|+|.- ++++.+.++++.+.+.+
T Consensus 83 ~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 83 ERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred hHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 44588888888763 588999999995 99999999999886544
No 221
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=91.68 E-value=4.2 Score=37.01 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=66.5
Q ss_pred CCcceEEEEeccCC--CCChHHHHHHHHHHhhcCCC-CeEE-EEEeCCCCcchHHHHHHHHHHhCC----ceEEEecC--
Q psy3650 198 VKNKYTVLLPTYNE--KENLPIIVYLITKYMDEGNY-PYEI-IVIDDGSPDGTLDAAKQLQSIYGS----EKIVLKPR-- 267 (435)
Q Consensus 198 ~~~~isivip~~n~--~~~l~~~l~~l~~~~~~~~~-~~ei-ivvdd~s~d~t~~~~~~~~~~~~~----~~i~~~~~-- 267 (435)
..++++|.||+-.+ ...|..+|.+|...+..... .+-| |.+-|..++....+.+.+...++. -.+.++..
T Consensus 50 ~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~ 129 (297)
T PF04666_consen 50 TGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPP 129 (297)
T ss_pred CCCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccc
Confidence 34569999999765 45788889998877664332 2333 333333333334444444322210 01222211
Q ss_pred ------------------------CCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC
Q psy3650 268 ------------------------KKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE 313 (435)
Q Consensus 268 ------------------------~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~ 313 (435)
.+|.-++..++.+. ..|+|++.+.+|....++++..+...+...
T Consensus 130 ~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~--~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 130 SYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQ--NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred ccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHH--hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 12333334444332 368999999999999999999999988653
No 222
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=91.45 E-value=3 Score=37.70 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=60.6
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-YGSEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
.+|..+....+..+++.+... ...-+|+||-+.. ..+.+++.... .+. +.++.++...|.+.|+..++..
T Consensus 26 ll~l~g~~~li~~~l~~l~~~----~~~~~i~vvt~~~---~~~~v~~~l~~~~~~--~~ii~ep~~~gTa~ai~~a~~~ 96 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGL----VPPDRILVVTNEE---YRFLVREQLPEGLPE--ENIILEPEGRNTAPAIALAALY 96 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcC----CCCCcEEEEechH---HHHHHHHHHhhcCCC--ceEEECCCCCCcHHHHHHHHHH
Confidence 356666566677777766442 1122777776531 22233332222 233 3334355567888888888776
Q ss_pred cc----CCEEEEEeCCCCCC-CccHHHHHHHHh---cCCCceEEeeeE
Q psy3650 284 AT----GNFIIIMDADLSHH-PKFIPEMIKLQQ---QENLDVVTGTRY 323 (435)
Q Consensus 284 a~----~d~v~~~d~D~~~~-~~~l~~~~~~~~---~~~~~~v~~~~~ 323 (435)
.. .++++++.+|..+. .+.+.+++.... +.+..+..|...
T Consensus 97 ~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p 144 (274)
T cd02509 97 LAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKP 144 (274)
T ss_pred HHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 53 47999999998765 344544443221 244555555443
No 223
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=91.44 E-value=0.93 Score=42.89 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....++.+++.+.... -+|+++-++..+ .+... .+...+..-..+...|...++..|++....+++
T Consensus 30 ~Gkpll~~~i~~l~~~~------~~iivvv~~~~~----~~~~~---~~~~~~i~d~~~g~~G~~~si~~gl~~~~~~~v 96 (366)
T PRK14489 30 GGKPLIERVVDRLRPQF------ARIHLNINRDPA----RYQDL---FPGLPVYPDILPGFQGPLSGILAGLEHADSEYL 96 (366)
T ss_pred CCeeHHHHHHHHHHhhC------CEEEEEcCCCHH----HHHhh---ccCCcEEecCCCCCCChHHHHHHHHHhcCCCcE
Confidence 45566677776664321 266664443221 12221 122233221222225788899999999888999
Q ss_pred EEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650 290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
+++++|.- ++++.+.+++..+...+.+++..
T Consensus 97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 97 FVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred EEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 99999984 89999999999876666676654
No 224
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.31 E-value=0.6 Score=39.13 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 44 KKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
...|...+...|++.+. .|+++++.+|. .++++.+..+++.+.+++.++++.
T Consensus 72 ~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 126 (186)
T cd04182 72 WEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred hhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 34688899999999887 79999999999 678899999999886555555554
No 225
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=91.14 E-value=4.1 Score=37.07 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=91.7
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
.+|+++. ..+...|..+... . --+|++|..... . +.++++... .-++++.+...++..|.+.|+..+..
T Consensus 24 Llpv~gk-PmI~~~L~~l~~a----G-i~~I~iv~~~~~--~-~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~ 94 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLA----G-IRDILIISTPQD--T-PRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGED 94 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHC----C-CCEEEEEecCCc--H-HHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHH
Confidence 5777775 6677777666541 1 236766643222 1 122232221 12345666666677899999999999
Q ss_pred hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccc
Q psy3650 283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLT 359 (435)
Q Consensus 283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 359 (435)
....+-++++.+|+.+....+..+++...+.+.++.+......+... +.... +... ..+.+..- ...-....
T Consensus 95 ~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~--yGvv~-~d~~--g~V~~i~EKp~~~~s~~~~ 169 (286)
T TIGR01207 95 FIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVE-FDSN--GRAISIEEKPAQPKSNYAV 169 (286)
T ss_pred HhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHH--CceEE-ECCC--CeEEEEEECCCCCCCCEEE
Confidence 87654344456887766677888888765555554333222221110 00000 0000 00000000 01112345
Q ss_pred cceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCC
Q psy3650 360 GSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNY 397 (435)
Q Consensus 360 ~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~ 397 (435)
.|..+|+.++++.+...... .+-.+-.++.-.+.+.|.
T Consensus 170 ~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~ 208 (286)
T TIGR01207 170 TGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGR 208 (286)
T ss_pred EEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCC
Confidence 67789999998766322111 111233577777777774
No 226
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=90.97 E-value=4.7 Score=36.89 Aligned_cols=143 Identities=12% Similarity=0.158 Sum_probs=74.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCC-------ccHHHHHHHHhcCCCceEEeeeEECCCceec
Q psy3650 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHP-------KFIPEMIKLQQQENLDVVTGTRYVGTGGVYG 331 (435)
Q Consensus 259 ~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~-------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 331 (435)
.+++.++.+++..|.+.|+..+......+-++++.+|...++ -.+.+|++...+++..++.......+...
T Consensus 96 ~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~-- 173 (297)
T TIGR01105 96 GVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSE-- 173 (297)
T ss_pred CceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCcc--
Confidence 345767667778999999999999875433445559987654 27888888765445554444333212111
Q ss_pred cchhHH---HHHHH-HHHHHHHhcCC------CccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEE
Q psy3650 332 WDFKRK---LVSRG-ANYLTQLLLRP------GVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIG 400 (435)
Q Consensus 332 ~~~~~~---~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~ 400 (435)
+..... ..... ...+....-.. ......+|..+|++++|+.+...... .+-.+-.|+.-.+.+.| ++.
T Consensus 174 yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~-~v~ 252 (297)
T TIGR01105 174 YSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQ-SVD 252 (297)
T ss_pred ceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcC-CEE
Confidence 111100 00000 00000100010 11245677899999999987332211 11112345555666655 666
Q ss_pred Eeee
Q psy3650 401 EVPI 404 (435)
Q Consensus 401 ~~p~ 404 (435)
-.+.
T Consensus 253 ~~~~ 256 (297)
T TIGR01105 253 AMLM 256 (297)
T ss_pred EEEe
Confidence 5554
No 227
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=90.89 E-value=3.1 Score=35.50 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=57.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....++.+++.+.... -+|+|+-+.. +..+.+.. ..+.++ .......|...++..|++....+++
T Consensus 31 ~g~~ll~~~i~~l~~~~------~~ivvv~~~~-----~~~~~~~~--~~~~~i-~~~~~~~G~~~si~~~l~~~~~~~v 96 (200)
T PRK02726 31 QGVPLLQRVARIAAACA------DEVYIITPWP-----ERYQSLLP--PGCHWL-REPPPSQGPLVAFAQGLPQIKTEWV 96 (200)
T ss_pred CCEeHHHHHHHHHHhhC------CEEEEECCCH-----HHHHhhcc--CCCeEe-cCCCCCCChHHHHHHHHHhCCCCcE
Confidence 44556677776664321 2666664321 12222211 122322 2223346888999999999888999
Q ss_pred EEEeCCCC-CCCccHHHHHHHHhc
Q psy3650 290 IIMDADLS-HHPKFIPEMIKLQQQ 312 (435)
Q Consensus 290 ~~~d~D~~-~~~~~l~~~~~~~~~ 312 (435)
+++++|.- ++++.+..+++...+
T Consensus 97 lv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 97 LLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhc
Confidence 99999996 899999999998754
No 228
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=90.77 E-value=1.5 Score=36.88 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHh-hccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 46 LGLGTAYMHGLK-YATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 46 ~g~~~a~n~gl~-~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
.|.+.+...|++ ....++++++++|. .++++.+..+++.....+.++++.
T Consensus 74 ~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 74 EGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred cCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 578888888888 45579999999999 578899999998876555555544
No 229
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=90.69 E-value=3.2 Score=37.61 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=63.0
Q ss_pred ceEEEE-eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC------------
Q psy3650 201 KYTVLL-PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR------------ 267 (435)
Q Consensus 201 ~isivi-p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~------------ 267 (435)
.++|++ |.|..+.....+++-|.-.... ..-.+++-+++++++..++|+.+.+. ..+.+...+.
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~--G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g~v~~~~w~~~~~~~~~~~~~~ 78 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLL--GVDHFYFYDNSSSPSVRKVLKEYERS-GYVEVIPWPLRPKFPDFPSPFP 78 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHh--CCCEEEEEEccCCHHHHHhHHHHhhc-CeEEEEEcccccccCCcccchh
Confidence 456666 6666444333444333322111 23488888889999999999988776 3334444320
Q ss_pred CCC-----CCHHHHHHHHHhhc--cCCEEEEEeCCCCCCCcc----HHHHHHHHhc
Q psy3650 268 KKK-----LGLGTAYMHGLKYA--TGNFIIIMDADLSHHPKF----IPEMIKLQQQ 312 (435)
Q Consensus 268 ~~n-----~g~~~a~n~g~~~a--~~d~v~~~d~D~~~~~~~----l~~~~~~~~~ 312 (435)
..+ .|...+.+.-+... ..+|++++|-|..+-|.. ...+...+++
T Consensus 79 ~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~ 134 (285)
T PF01697_consen 79 DPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLRE 134 (285)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhh
Confidence 011 12344555555554 359999999998743333 5666666554
No 230
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=90.61 E-value=3.2 Score=38.14 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=72.2
Q ss_pred eEEEEEeCCCC---cC---hHHHHHHHHHHhCCceEEEccCC---------------------CCCCHHHHHHHHHhhcc
Q psy3650 8 YEIIVIDDGSP---DG---TLDAAKQLQSIYGSEKIVLKPRK---------------------KKLGLGTAYMHGLKYAT 60 (435)
Q Consensus 8 ~EiivvDd~S~---d~---t~~i~~~~~~~~~~~~i~~~~~~---------------------~n~g~~~a~n~gl~~a~ 60 (435)
--||||.|.+. |. -.+.++.|+.--.+.-+.++++. -+-|||.++-.|+-.|+
T Consensus 77 C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk 156 (381)
T PF09488_consen 77 CLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAK 156 (381)
T ss_dssp SEEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHH
Confidence 45888877776 44 33667777764333333333221 12389999999998886
Q ss_pred --C-CEEEEEcCCCCCCCCcHHHHH----HHHh--cCCCcEEEEeeeecCCCccCcccchhh------hhchHHHHHHHH
Q psy3650 61 --G-NFIIIMDADLSHHPKFIPEMI----KLQQ--QENLDVVTGTRYVGTGGVYGWDFKRKL------VSRGANYLTQLL 125 (435)
Q Consensus 61 --g-d~i~~lD~D~~~~~~~l~~~~----~~~~--~~~~~~v~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 125 (435)
| +||-|+|+|..++ +.+-+.+ ..+. +.++.+|=-.+...+.-..+.-+.+++ .++..+.+....
T Consensus 157 ~~g~~YVGFvDADNyiP-GaV~EYvk~yAAGf~ms~spytMVRi~W~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~ 235 (381)
T PF09488_consen 157 APGKRYVGFVDADNYIP-GAVNEYVKDYAAGFAMSESPYTMVRIHWRSKPKVVKGELYFKKWGRVSEITNRYLNRLISAI 235 (381)
T ss_dssp HTT-SEEEE--TTBS-H-HHHHHHHHHHHHHHHC-SSSCEEEEEE------TT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCceEeEeeccCCCc-chHHHHHHHHHhhhcccCCCceEEEEEecCCCceecCcEEEeecccccHHHHHHHHHHhccc
Confidence 3 9999999998554 4444433 3332 345555533332222221222233333 222222222222
Q ss_pred hCCC--c-cccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhc
Q psy3650 126 LRPG--V-SDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYN 171 (435)
Q Consensus 126 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g 171 (435)
.+.. + .....|=-+++-++-..+ .+..+|..+ +++...+-+.|
T Consensus 236 ~gfet~ii~TgNAGEHAMTm~LA~~l---~~atGYaIEPy~~V~llE~fg 282 (381)
T PF09488_consen 236 TGFETEIIKTGNAGEHAMTMKLAEKL---RYATGYAIEPYEYVYLLERFG 282 (381)
T ss_dssp HSS-------TT-SSEEEEHHHHTTS----EESCCCHHHHHHHHHHHHHS
T ss_pred cCCCCceEEccCchhhhhhHHHHHhC---CcccCccccchHHHHHHHHhC
Confidence 2222 1 222233446777777666 344566554 55555444444
No 231
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=90.61 E-value=0.45 Score=42.32 Aligned_cols=114 Identities=8% Similarity=0.009 Sum_probs=57.2
Q ss_pred cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650 285 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL 364 (435)
Q Consensus 285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
..+|.+++|+|+.+..+.|.+++..+. +..++.+|.+........ ...... ......+.. ...+|+..+
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~-~~~~~yiG~~~~~~~~~~----~~~~~~-----~~~~~~~~~-f~~GGaG~v 154 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYD-PSEPIYIGRPSGDRPIEI----IHRFNP-----NKSKDSGFW-FATGGAGYV 154 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS--TTS--EEE-EE--------------------------------EE-GGG-EE
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCC-CccCEEeeeeccCcccee----eccccc-----cccCcCceE-eeCCCeeHH
Confidence 569999999999998888888888763 566788887755421100 000000 000011111 224455589
Q ss_pred ecHHHHHHhhh-----cccC----cccchhhHHHHHHHH-CCCcEEEeeeEEeec
Q psy3650 365 YKKQVLENLVS-----SCVS----KGYVFQMEMVIRARQ-YNYTIGEVPISFVDR 409 (435)
Q Consensus 365 ~~r~~~~~~~~-----~~~~----~~~~~D~el~lr~~~-~G~~i~~~p~~~~~~ 409 (435)
++|.+++++.. .... ....+|+.|..-+.. .|.++...|.-..++
T Consensus 155 lSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~ 209 (252)
T PF02434_consen 155 LSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL 209 (252)
T ss_dssp EEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred HhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence 99999999931 1111 134589999888888 999998887655444
No 232
>PLN02195 cellulose synthase A
Probab=90.42 E-value=0.32 Score=50.55 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=63.8
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCCCCCC-CcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADLSHHP-KFIPEMIKLQQQE----NLDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~~~~~-~~l~~~~~~~~~~----~~~~v~g~~~~~~ 101 (435)
+++|+..+.+- -|++|+|.+++.+ .++||+.+|+|....+ +++.+.+=.+.++ +..+|..++....
T Consensus 420 ~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~ 499 (977)
T PLN02195 420 RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDG 499 (977)
T ss_pred eeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCC
Confidence 46666444443 4889999999754 4899999999986555 6888888777554 3346766665443
Q ss_pred CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650 102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
-+.. .++... ...++......+-+...+...|+..++||+++-..
T Consensus 500 i~~~-D~y~~~-~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~ 544 (977)
T PLN02195 500 IDRS-DRYANR-NVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGY 544 (977)
T ss_pred CCCC-CCCCcc-cceeeeeeeccccccCCccccccCceeeehhhhcc
Confidence 3211 111111 11112222222223333333444457899988754
No 233
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=90.33 E-value=0.38 Score=33.93 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=31.9
Q ss_pred cccccceehhhHHHHHHhhccc-cccCc-hhhHHHHHHHHhhcceeEeee
Q psy3650 131 SDLTGSFRLYKKQVLENLVSSC-VSKGY-VFQMEMVIRARQYNYTIGEVP 178 (435)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~d~~l~~r~~~~g~~~~~~~ 178 (435)
....+|..+++++.+.++++.. ...+| .+|.|+..|+..+|+++...+
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SS
T ss_pred CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecC
Confidence 4455788899999999996554 45666 579999999999999876644
No 234
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=90.32 E-value=3.4 Score=34.68 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
...|...+...|+.....++++++++|. .++++.++.+++.+.+.+.++++
T Consensus 71 ~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 71 DFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred CCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 4478889999999988889999999999 78999999999988655666665
No 235
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=90.29 E-value=4.3 Score=37.03 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHh
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLK 282 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~ 282 (435)
++|+++. ..+...+..+... . --+|++|..... . +.++++.... -.+.+.+...++..|.+.|+..|.+
T Consensus 28 Llpv~gk-PmI~~~l~~l~~a----G-i~~I~ii~~~~~--~-~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~ 98 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLA----G-IRDILIISTPQD--T-PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEE 98 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHC----C-CCEEEEEecCCc--h-HHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHH
Confidence 5777876 6677777766542 1 237776654322 1 1223332211 1235556666667899999999998
Q ss_pred hccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCcccc
Q psy3650 283 YATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDL 358 (435)
Q Consensus 283 ~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 358 (435)
.... ++++ +.+|+.+....+..+++...+.+.++.+......+... +.... +... ..+.+..- ...-...
T Consensus 99 ~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~--yGvv~-~d~~--g~v~~i~EKP~~p~s~~a 172 (292)
T PRK15480 99 FIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVE-FDQN--GTAISLEEKPLQPKSNYA 172 (292)
T ss_pred HhCCCCEEE-EECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCccc--CcEEE-ECCC--CcEEEEEECCCCCCCCEE
Confidence 8754 5555 55777665567889988765555555443322222111 11100 0000 00001000 1111234
Q ss_pred ccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcE
Q psy3650 359 TGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTI 399 (435)
Q Consensus 359 ~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i 399 (435)
..|..+|+.++++.+....... +-.+-+++.-.+.+.|...
T Consensus 173 ~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~ 214 (292)
T PRK15480 173 VTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLS 214 (292)
T ss_pred EEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeE
Confidence 5677899999988874322221 1122356666677788543
No 236
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=90.27 E-value=0.34 Score=50.66 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=38.1
Q ss_pred EEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhc
Q psy3650 262 IVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQ 312 (435)
Q Consensus 262 i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~ 312 (435)
++++.++++.| |+.|+|.-++.+ ++.||+-+|+|.. -++..+.+.+-.+.+
T Consensus 456 LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD 516 (1044)
T PLN02915 456 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 516 (1044)
T ss_pred eEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence 44444444444 789999999976 7899999999996 778888877766544
No 237
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=90.18 E-value=0.35 Score=43.69 Aligned_cols=98 Identities=15% Similarity=0.326 Sum_probs=57.6
Q ss_pred CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHH-------------HHHHHHHhCCceEEE
Q psy3650 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDA-------------AKQLQSIYGSEKIVL 264 (435)
Q Consensus 198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~-------------~~~~~~~~~~~~i~~ 264 (435)
....+.||||+-.+.. +|++-...++ .+++|+|-|+....+... ..++.... -..
T Consensus 9 ~~~evdIVi~TI~~~~----fL~~~r~~l~----~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~----~~~ 76 (346)
T PLN03180 9 LKDELDIVIPTIRNLD----FLEMWRPFFQ----PYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPK----ASC 76 (346)
T ss_pred CCCcceEEEeccCchh----HHHHHHHhcC----cccEEEEecCCcccceeccCCCceeecCHHHHHhhhccc----ccc
Confidence 4567999999976644 3444433333 556777766433222111 11111111 111
Q ss_pred ecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc-------cHHHHHHHHh
Q psy3650 265 KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK-------FIPEMIKLQQ 311 (435)
Q Consensus 265 ~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~-------~l~~~~~~~~ 311 (435)
+ ++.-.+.++.|+-.++.+|++.+|+|+....+ .+.+.+..+.
T Consensus 77 I----p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~ 126 (346)
T PLN03180 77 I----SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL 126 (346)
T ss_pred c----ccCcccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence 1 22345788999999999999999999986666 5565555443
No 238
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=89.79 E-value=0.42 Score=50.25 Aligned_cols=111 Identities=14% Similarity=0.081 Sum_probs=65.0
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHhh----ccCCEEEEEcCCCCC-CCCcHHHHHHHHhcCC----CcEEEEeeeecC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQEN----LDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~~----a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~~----~~~v~g~~~~~~ 101 (435)
.++|+..+.+- -|++|+|..++. ..++||+.+|+|... +|.++.+.+=.+.++. ..+|..++...+
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~ 596 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDG 596 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCC
Confidence 45666444443 489999999944 468999999999955 4899999888776543 446777765543
Q ss_pred CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650 102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
-+... ++... ..-++.....-+-+...+...|+-.++||+++-..
T Consensus 597 i~k~D-~Ygn~-~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~ 641 (1079)
T PLN02638 597 IDRND-RYANR-NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY 641 (1079)
T ss_pred CCCCC-ccccc-ceeeeccccccccccCCccccccCcceeehhhcCc
Confidence 33211 11111 11111222222223333444444457899988654
No 239
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=89.77 E-value=2.6 Score=36.95 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....++.+++.+... ...-+|+|+-+..... +.+.++.... .+. ++..+...+. .....+++....+++
T Consensus 22 ~Gkpli~~~i~~l~~~----~~~~~ivVv~~~~~~~--~~i~~~~~~~-~v~--~v~~~~~~~l-~~~~~~~~~~~~d~v 91 (233)
T cd02518 22 GGKPLLEHLLDRLKRS----KLIDEIVIATSTNEED--DPLEALAKKL-GVK--VFRGSEEDVL-GRYYQAAEEYNADVV 91 (233)
T ss_pred CCccHHHHHHHHHHhC----CCCCeEEEECCCCccc--HHHHHHHHHc-CCe--EEECCchhHH-HHHHHHHHHcCCCEE
Confidence 4455666767665431 1112666665544311 1222332222 223 3334332222 222334444567999
Q ss_pred EEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650 290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
+++++|.- ++++.+.++++.+...+.++++
T Consensus 92 li~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 92 VRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 99999995 9999999999988766667665
No 240
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=89.46 E-value=4.8 Score=35.82 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHH
Q psy3650 270 KLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQ 348 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
..|.+.++-.+.+...+ +.++++++|...+.+. ..|++.....+.++...... .... . .... .... ..+..
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~-~~~~-~--g~v~-~d~~--g~V~~ 172 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGKLATVTAVH-PPGR-F--GELD-LDDD--GQVTS 172 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCCCEEEEEec-CCCc-c--cEEE-ECCC--CCEEE
Confidence 34568888888888765 8899999999887665 88888666556555432211 1000 0 0000 0000 00000
Q ss_pred HhcCC--CccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEe
Q psy3650 349 LLLRP--GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEV 402 (435)
Q Consensus 349 ~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~ 402 (435)
..-.. +-....+|..+|++++++.+... ......++.-++.+.| ++..+
T Consensus 173 ~~ekp~~~~~~i~~Giyi~~~~l~~~l~~~----~~~~~~d~l~~li~~~-~v~~~ 223 (253)
T cd02524 173 FTEKPQGDGGWINGGFFVLEPEVFDYIDGD----DTVFEREPLERLAKDG-ELMAY 223 (253)
T ss_pred EEECCCCCCceEEEEEEEECHHHHHhhccc----cchhhHHHHHHHHhcC-CEEEE
Confidence 00000 11235677899999998777321 2223346777777777 55433
No 241
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=89.35 E-value=1.8 Score=37.11 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccCCCC--------CCHHHHHHHHHhhcc-------CCEEEEEcC
Q psy3650 7 PYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKKK--------LGLGTAYMHGLKYAT-------GNFIIIMDA 69 (435)
Q Consensus 7 ~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~~~n--------~g~~~a~n~gl~~a~-------gd~i~~lD~ 69 (435)
|.-.|||+|+. ++.|.+++++. .+...++....+ +| ...+|.|+++.+ ..+|.|.|+
T Consensus 31 ~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADD 104 (223)
T cd00218 31 PLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLKPRG-VEQRNLALRWIREHLSAKLDGVVYFADD 104 (223)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCCccc-HHHHHHHHHHHHhccccCcceEEEEccC
Confidence 68899999987 23344555543 233444322222 23 466999998875 268999999
Q ss_pred CCCCCCCcHHHHH
Q psy3650 70 DLSHHPKFIPEMI 82 (435)
Q Consensus 70 D~~~~~~~l~~~~ 82 (435)
|..++-+.+++|-
T Consensus 105 dN~Ysl~lF~emR 117 (223)
T cd00218 105 DNTYDLELFEEMR 117 (223)
T ss_pred CCcccHHHHHHHh
Confidence 9999988777743
No 242
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=89.22 E-value=2.5 Score=35.50 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC-CCCCHHHHHHHHHh-hccCC
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLK-YATGN 287 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~g~~-~a~~d 287 (435)
+....+...++.+.+. . .-+|+||-+...+ +..+.+.... .+.++..+ ...|...++..|++ ....+
T Consensus 23 ~g~pll~~~i~~l~~~----~-~~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~~l~~~~~~~ 91 (188)
T TIGR03310 23 KGKTILEHVVDNALRL----F-FDEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEGQSSSIKLGLELPVQSD 91 (188)
T ss_pred CCeeHHHHHHHHHHHc----C-CCcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcCHHHHHHHHhcCCCCCC
Confidence 3455666666655431 1 2266666443222 2233332211 23333332 23577888888988 45679
Q ss_pred EEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650 288 FIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 288 ~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
+++++++|.- ++++.+..+++.+...+.++++.
T Consensus 92 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 92 GYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred EEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 9999999995 88999999999876555555544
No 243
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=89.20 E-value=0.37 Score=41.40 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhC-CceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 85 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~-~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~ 85 (435)
-|++||-+|- -.+.++++-.++| ...+++-+..+..+-+.++-.|...++++ ++++++|..++|..++.++++-
T Consensus 47 ~e~vvV~~g~---~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 47 TEFVVVTNGY---RADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred ceEEEEeccc---hHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 6888886654 3466777777777 45555544434444467788889999988 8889999999999999999854
No 244
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=89.15 E-value=3.5 Score=36.01 Aligned_cols=86 Identities=12% Similarity=0.210 Sum_probs=50.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~ 291 (435)
...+...++++.+. . --+|+||-.... +.++++....+++.++..+.....|.+.++..++... .+.+++
T Consensus 29 ~~li~~~l~~l~~~----g-i~~i~vv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv 98 (229)
T cd02523 29 KPLLERQIETLKEA----G-IDDIVIVTGYKK----EQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL-DEDFLL 98 (229)
T ss_pred EEHHHHHHHHHHHC----C-CceEEEEeccCH----HHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEE
Confidence 46667777666542 1 226766654322 2233333222333444332223568888899998887 678899
Q ss_pred EeCCCCCCCccHHHHH
Q psy3650 292 MDADLSHHPKFIPEMI 307 (435)
Q Consensus 292 ~d~D~~~~~~~l~~~~ 307 (435)
+++|..+.++.+..+.
T Consensus 99 ~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 99 LEGDVVFDPSILERLL 114 (229)
T ss_pred EeCCEecCHHHHHHHH
Confidence 9999988776555444
No 245
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=89.13 E-value=1.8 Score=37.80 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=43.2
Q ss_pred ccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 40 KPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 40 ~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
+..+...|.+.++..|+.... .+.++++++|. .+++..+..+++...+.++++++.
T Consensus 67 ~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~ 125 (229)
T cd02540 67 VLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVL 125 (229)
T ss_pred EECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE
Confidence 334555788999998998765 58999999998 568889999998886666666543
No 246
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=89.03 E-value=2.2 Score=35.68 Aligned_cols=51 Identities=16% Similarity=0.357 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
...|...++..|++....++++++.+|. .++++.+..+++.+ +++.++++.
T Consensus 67 ~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 67 PGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred CCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 4568889999999998889999999999 57999999999987 555555553
No 247
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=88.76 E-value=7.4 Score=34.24 Aligned_cols=174 Identities=12% Similarity=0.059 Sum_probs=87.7
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhhccCCE
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 288 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~ 288 (435)
....+..+++.+.+. . --+|++|..... .+.+.++... ...+.+.....+...|.+.++..+......+-
T Consensus 30 ~~pli~~~l~~l~~~----g-i~~i~vv~~~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~ 101 (240)
T cd02538 30 DKPMIYYPLSTLMLA----G-IREILIISTPED---LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDP 101 (240)
T ss_pred CEEhHHHHHHHHHHC----C-CCEEEEEeCcch---HHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCC
Confidence 455677777666541 1 226777654322 1122222211 11334555445556788999999988876666
Q ss_pred EEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccccccceeee
Q psy3650 289 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSDLTGSFRLY 365 (435)
Q Consensus 289 v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 365 (435)
++++.+|..+.+..+.++++...+.+.++........+... +.... .... +.+....-. .......+|+.+|
T Consensus 102 ~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~-~d~~--g~v~~~~ekp~~~~~~~~~~Giyi~ 176 (240)
T cd02538 102 VCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER--YGVVE-FDEN--GRVLSIEEKPKKPKSNYAVTGLYFY 176 (240)
T ss_pred EEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhc--CceEE-ecCC--CcEEEEEECCCCCCCCeEEEEEEEE
Confidence 67778998766667888888765545554433222221110 10000 0000 000000000 1112345678899
Q ss_pred cHHHHHHhhhcccCc-ccchhhHHHHHHHHCCC
Q psy3650 366 KKQVLENLVSSCVSK-GYVFQMEMVIRARQYNY 397 (435)
Q Consensus 366 ~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~ 397 (435)
++++++.+....... +..+-.++.-++.+.|.
T Consensus 177 ~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~ 209 (240)
T cd02538 177 DNDVFEIAKQLKPSARGELEITDVNNEYLEKGK 209 (240)
T ss_pred CHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCC
Confidence 999987663211111 11222467777777773
No 248
>KOG3588|consensus
Probab=88.70 E-value=3.3 Score=38.00 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=90.1
Q ss_pred CCCeEEEEEeCCC-CcC--hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC-EEEEEcCCCCCCCCcHHH
Q psy3650 5 NYPYEIIVIDDGS-PDG--TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN-FIIIMDADLSHHPKFIPE 80 (435)
Q Consensus 5 ~~~~EiivvDd~S-~d~--t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd-~i~~lD~D~~~~~~~l~~ 80 (435)
+-..+++||==|+ .|+ ..+.+..+.+.+++ +..+...+..+.+.|+-.|.+.-..+ .++|.|-|..+..++|.+
T Consensus 256 d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~--~q~l~lngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~r 333 (494)
T KOG3588|consen 256 DDRLALSVVYFGYSEDEMAKRETITSLRASFIP--VQFLGLNGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNR 333 (494)
T ss_pred CCceEEEEEEecCCChHHHhhhHHHHHhhcCCc--eEEecccchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHH
Confidence 3445666665444 333 22455577776654 45445555567888889998888655 566778899999999988
Q ss_pred HHHHHhcCCCcE---EEEeeeecCCCccCcccchhhhhchHHHHH-HHHhCCCcccccccee-hhhHHHHHHhhcccccc
Q psy3650 81 MIKLQQQENLDV---VTGTRYVGTGGVYGWDFKRKLVSRGANYLT-QLLLRPGVSDLTGSFR-LYKKQVLENLVSSCVSK 155 (435)
Q Consensus 81 ~~~~~~~~~~~~---v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 155 (435)
+-... ..+..+ |+.+.+...- + .-..+..+ ....+. ....+. ..+..-|.. .++.+++.--|.+....
T Consensus 334 cr~Nt-~~gkqiyfPivFS~ynp~i-v---y~~~~~~p-~e~~~~~~~~tGf-wRdfGfGmtc~yrsd~~~vgGFD~~I~ 406 (494)
T KOG3588|consen 334 CRLNT-ILGKQIYFPIVFSQYNPEI-V---YEQDKPLP-AEQQLVIKKDTGF-WRDFGFGMTCQYRSDFLTVGGFDMEIK 406 (494)
T ss_pred Hhhcc-CCCceEEEEEEEeecCcce-e---ecCCCCCc-hhHheeecccccc-ccccCCceeEEeeccceeecCcceeee
Confidence 86544 233222 2222211100 0 00001111 111100 000111 122223333 34555543335555678
Q ss_pred Cc-hhhHHHHHHHHhhcceeEeeeeE
Q psy3650 156 GY-VFQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 156 ~~-~~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
+| .+|.+++.+..+.|.++...|..
T Consensus 407 GWG~EDV~Ly~K~v~~~l~viR~p~p 432 (494)
T KOG3588|consen 407 GWGGEDVDLYRKYVHSGLKVIRTPEP 432 (494)
T ss_pred ccCcchHHHHHHHHhcCcEEEecCCC
Confidence 88 46899999999999988776654
No 249
>PLN03153 hypothetical protein; Provisional
Probab=88.70 E-value=4 Score=39.63 Aligned_cols=123 Identities=10% Similarity=0.066 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehh
Q psy3650 61 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLY 140 (435)
Q Consensus 61 gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (435)
.+|++++|+|+.+.++.|..+++.. ++.....+|........+ ..++.. ...+|+-.++
T Consensus 211 ~kWfVf~DDDTyf~~~NLv~~Ls~Y-Dptkp~YIGs~Se~~~qn-------------------~~f~~~-fA~GGAG~~L 269 (537)
T PLN03153 211 VRWFVLGDDDTIFNADNLVAVLSKY-DPSEMVYVGGPSESHSAN-------------------SYFSHN-MAFGGGGIAI 269 (537)
T ss_pred CCEEEEecCCccccHHHHHHHHhhc-CCCCCEEecccccccccc-------------------cccccc-cccCCceEEE
Confidence 5999999999998776666666666 344455556543221110 000111 2233445688
Q ss_pred hHHHHHHhhc---ccc---ccCchhhHHHHHHHHhhcceeEeeeeEeeecccceeeeeecCCCCCcceEE
Q psy3650 141 KKQVLENLVS---SCV---SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTV 204 (435)
Q Consensus 141 ~~~~~~~~~~---~~~---~~~~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~isi 204 (435)
++.+++.+.. .+. ...+..|..+..=....|.++...+-.+.....+.........+..|.+|+
T Consensus 270 SrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSl 339 (537)
T PLN03153 270 SYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSI 339 (537)
T ss_pred cHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceee
Confidence 9877666522 121 123566776555444567776666555555554444444443333455665
No 250
>PLN02400 cellulose synthase
Probab=88.54 E-value=0.58 Score=49.27 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=40.9
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcC
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQE 313 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~ 313 (435)
.++++.++++.| |+.|+|.-++- +++.||+-+|+|.. -++..+.+.+-.+.++
T Consensus 524 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~ 586 (1085)
T PLN02400 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
T ss_pred eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheecc
Confidence 355555555555 78999999995 47899999999997 5888888888777543
No 251
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=88.44 E-value=2 Score=36.53 Aligned_cols=163 Identities=12% Similarity=0.068 Sum_probs=82.9
Q ss_pred CCeEEEEEeCCCC--cCh-HHHHHHHHHHhCCceEEEccCCCCC-C----HHHHHHHHHhhcc-CCEEEEEcCCCCCCCC
Q psy3650 6 YPYEIIVIDDGSP--DGT-LDAAKQLQSIYGSEKIVLKPRKKKL-G----LGTAYMHGLKYAT-GNFIIIMDADLSHHPK 76 (435)
Q Consensus 6 ~~~EiivvDd~S~--d~t-~~i~~~~~~~~~~~~i~~~~~~~n~-g----~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~ 76 (435)
....++.|-..+. +.. .+.+.+=.+++.+ |+.....+++ . .-.+++.+.+.+. .+|++.+|+|..+.+.
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~D--il~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGD--ILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCc--eEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 4466666665555 322 2223221233444 4444343332 2 2355666666666 6999999999999998
Q ss_pred cHHHHHHHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcc--cc
Q psy3650 77 FIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS--CV 153 (435)
Q Consensus 77 ~l~~~~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 153 (435)
.|...+... .......++|............ ..+...+....... ..+ .-..|++.++++++++.+... ..
T Consensus 97 ~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~-~~kw~v~~~~y~~~----~yP-~y~~G~~yvls~~~v~~i~~~~~~~ 170 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDP-SSKWYVSEEEYPDD----YYP-PYCSGGGYVLSSDVVKRIYKASSHT 170 (195)
T ss_pred HhhhhhhhcccCccccccccccccCCcccccc-ccCceeeeeecccc----cCC-CcCCCCeEEecHHHHHHHHHHhhcC
Confidence 888888766 2233445555443332211110 11111111000000 011 112356778999999887332 12
Q ss_pred ccCchhhHHHHHHHHhhcceeEe
Q psy3650 154 SKGYVFQMEMVIRARQYNYTIGE 176 (435)
Q Consensus 154 ~~~~~~d~~l~~r~~~~g~~~~~ 176 (435)
..-..+|.-+++-+.+.|.+...
T Consensus 171 ~~~~~eDv~iGi~~~~~~i~~~~ 193 (195)
T PF01762_consen 171 PFFPLEDVFIGILAEKLGIKPIH 193 (195)
T ss_pred CCCCchHHHHHHHHHHCCCCccC
Confidence 22334566666666677776543
No 252
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=88.41 E-value=11 Score=32.38 Aligned_cols=104 Identities=14% Similarity=0.150 Sum_probs=61.8
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-----CCceEEEecCCCCCCHHHHHHH
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-----GSEKIVLKPRKKKLGLGTAYMH 279 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~~i~~~~~~~n~g~~~a~n~ 279 (435)
.+|.-|. ..+..+++.+.+. .--+|++|-... ..+.+++..... ....+.........|.+.++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~-----g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKA-----GFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHC-----CCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHH
Confidence 3455453 6677777766541 123777775421 122233333322 1223445555667899999999
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEE
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~ 319 (435)
+.+...++ ++++.+|...+ ..+..+++.....+..+.+
T Consensus 96 ~~~~i~~d-~lv~~~D~i~~-~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 96 IRKKIKKD-FLVLSCDLITD-LPLIELVDLHRSHDASLTV 133 (214)
T ss_pred HHhhcCCC-EEEEeCccccc-cCHHHHHHHHhccCCcEEE
Confidence 99887555 77889996544 5578888877665555444
No 253
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=88.35 E-value=5.8 Score=34.61 Aligned_cols=102 Identities=12% Similarity=0.158 Sum_probs=57.3
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHH-HHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAK-QLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA 284 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a 284 (435)
+|..+. ..+..+++.+.+. . .-++++|-. ........+. .+....+++.+...+ +...|.+.++..|....
T Consensus 24 l~i~g~-pli~~~l~~l~~~----g-~~~ivvv~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~g~~~~l~~a~~~l 95 (231)
T cd04183 24 IEVDGK-PMIEWVIESLAKI----F-DSRFIFICR-DEHNTKFHLDESLKLLAPNATVVELD-GETLGAACTVLLAADLI 95 (231)
T ss_pred eEECCE-EHHHHHHHhhhcc----C-CceEEEEEC-hHHhhhhhHHHHHHHhCCCCEEEEeC-CCCCcHHHHHHHHHhhc
Confidence 455443 5677777666441 1 225555543 2222222222 232223445555443 45778899999998876
Q ss_pred c-CCEEEEEeCCCCCCCccHHHHHHHHhcCCCc
Q psy3650 285 T-GNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316 (435)
Q Consensus 285 ~-~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~ 316 (435)
. .+.++++++|.....+.. .++....+.+.+
T Consensus 96 ~~~~~~lv~~~D~i~~~~~~-~~~~~~~~~~~~ 127 (231)
T cd04183 96 DNDDPLLIFNCDQIVESDLL-AFLAAFRERDLD 127 (231)
T ss_pred CCCCCEEEEecceeeccCHH-HHHHHhhccCCc
Confidence 4 477888999998877644 555544333333
No 254
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=88.33 E-value=13 Score=32.35 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH-H--H
Q psy3650 270 KLGLGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-S--R 341 (435)
Q Consensus 270 n~g~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~--~ 341 (435)
..|...++..|++.. ..|.++++++|.- ..++.+.++++.+.+.++|.+.+....... +.+.... . .
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-----~~~~~~~~~~g~ 149 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-----IQRAFKLKENGG 149 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-----hHHheEECCCCc
Confidence 446678888888764 2699999999995 899999999999987668877775432210 0000000 0 0
Q ss_pred HH-----HHHHHHhcCCCccccccceeeecHHHHHHh
Q psy3650 342 GA-----NYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373 (435)
Q Consensus 342 ~~-----~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 373 (435)
.. ....+..--.+.....|++.+++++.+.+-
T Consensus 150 ~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~ 186 (222)
T TIGR03584 150 VEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES 186 (222)
T ss_pred EEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc
Confidence 00 000011111234567899999999998764
No 255
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=88.19 E-value=1.7 Score=40.46 Aligned_cols=154 Identities=12% Similarity=0.017 Sum_probs=91.3
Q ss_pred CceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcC-CCcEEEEe-e--eec--CCCccC
Q psy3650 34 SEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQE-NLDVVTGT-R--YVG--TGGVYG 106 (435)
Q Consensus 34 ~~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~-~~~~v~g~-~--~~~--~~~~~~ 106 (435)
.++++.+...+..|...|++.+-.+-+| +|++.+|+...+.++|=+.+++.++.- +.-.|... . +.. ......
T Consensus 89 ~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~~~~~~~~~ 168 (343)
T PF11397_consen 89 QIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEPDGGQPEPE 168 (343)
T ss_pred eEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcccccCCcccc
Confidence 4566666777888999999999998886 899999999999999999999988763 22223221 1 111 000000
Q ss_pred cccchhh-----hhchHHHHHHHH--------hCCCccccccceehhhHHHHHHhhccccc--cCchhhHHHHHHHHhhc
Q psy3650 107 WDFKRKL-----VSRGANYLTQLL--------LRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGYVFQMEMVIRARQYN 171 (435)
Q Consensus 107 ~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~l~~r~~~~g 171 (435)
......+ ............ .........+||..-+-+++..+..+... .-.++++-+..|+.-.|
T Consensus 169 ~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eVP~DP~lp~lF~GEE~~~aaRlwT~G 248 (343)
T PF11397_consen 169 KTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREVPYDPHLPFLFDGEEISMAARLWTHG 248 (343)
T ss_pred CCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecCCCCCCcccccccHHHHHHHHHHHcC
Confidence 0000000 000000000000 01112333566766677777777555444 44466788889999999
Q ss_pred ceeEeeeeEeeecccc
Q psy3650 172 YTIGEVPISFVDRVVF 187 (435)
Q Consensus 172 ~~~~~~~~~~~~r~~~ 187 (435)
|.+..-+.....+.+.
T Consensus 249 YD~Y~P~~~v~~H~Y~ 264 (343)
T PF11397_consen 249 YDFYSPTRNVLFHLYS 264 (343)
T ss_pred CccccCCCceeEEEcc
Confidence 9986655555555543
No 256
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=88.17 E-value=3.4 Score=34.95 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 45 KLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 45 n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..|...+...|++....++++++++|. .++++.+..+++.+.+.+..++.
T Consensus 73 ~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 123 (193)
T PRK00317 73 FPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW 123 (193)
T ss_pred CCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence 367778889999988889999999999 77999999999987555544443
No 257
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=88.13 E-value=5.2 Score=35.68 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred eEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc--cHHHHHHHHhcCCCceE
Q psy3650 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVV 318 (435)
Q Consensus 261 ~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~--~l~~~~~~~~~~~~~~v 318 (435)
.+.........|.+.++..+......+-++++.+|..+... .+.++++...+.+.+++
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii 153 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSII 153 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEE
Confidence 44444445567899999999887755667888888876544 79999998776666653
No 258
>PRK10122 GalU regulator GalF; Provisional
Probab=88.10 E-value=11 Score=34.47 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=42.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhhcc-CCEEEEEeCCCCCCCc-------cHHHHHHHHhcCCCceEE
Q psy3650 259 SEKIVLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHPK-------FIPEMIKLQQQENLDVVT 319 (435)
Q Consensus 259 ~~~i~~~~~~~n~g~~~a~n~g~~~a~-~d~v~~~d~D~~~~~~-------~l~~~~~~~~~~~~~~v~ 319 (435)
..++..+.+++..|.+.|+..+..... .+++++. +|..++++ .+..+++...+.+.+++.
T Consensus 96 ~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~ 163 (297)
T PRK10122 96 GVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGRSQVL 163 (297)
T ss_pred CceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCCcEEE
Confidence 445666667778899999999999874 4666555 88877543 588888876655555443
No 259
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=87.97 E-value=6.8 Score=33.80 Aligned_cols=170 Identities=9% Similarity=0.073 Sum_probs=87.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNF 288 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~ 288 (435)
+....+..+++.+.+ ....-+|+|+-+... .+.+.+...... .+.++... .+...++..|+... ..|+
T Consensus 25 ~gkpll~~~l~~l~~----~~~~~~ivVv~~~~~---~~~~~~~~~~~~--~~~~~~~~--~~~~~sl~~~l~~~~~~d~ 93 (217)
T TIGR00453 25 GGRPLLEHTLDAFLA----HPAIDEVVVVVSPED---QEFFQKYLVARA--VPKIVAGG--DTRQDSVRNGLKALKDAEW 93 (217)
T ss_pred CCeEHHHHHHHHHhc----CCCCCEEEEEEChHH---HHHHHHHhhcCC--cEEEeCCC--chHHHHHHHHHHhCCCCCE
Confidence 455566666666543 111236777654321 122222211111 23333221 23567888888877 6799
Q ss_pred EEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCcee--ccchhHHHHHHHHHHHHHHhcCCCccccccceeee
Q psy3650 289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY--GWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLY 365 (435)
Q Consensus 289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (435)
++++++|.- ++++.+..+++.+.+.+..+++.+. .++-.. .......... +..+...++. .+|
T Consensus 94 vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~--~~~v~~~~~~g~~~~~~~-----------r~~~~~~~~p-~~f 159 (217)
T TIGR00453 94 VLVHDAARPFVPKELLDRLLEALRKAGAAILALPV--ADTLKRVEADGFIVETVD-----------REGLWAAQTP-QAF 159 (217)
T ss_pred EEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEec--cceEEEEcCCCceeecCC-----------hHHeEEEeCC-Ccc
Confidence 999999995 9999999999988653322222111 111000 0000000011 1123334443 579
Q ss_pred cHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 366 KKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 366 ~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
+++.++++.......++. -+|..-.+...|.++..++..
T Consensus 160 ~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~~ 198 (217)
T TIGR00453 160 RTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEGD 198 (217)
T ss_pred cHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEecC
Confidence 999998874321112222 234444456779999887653
No 260
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=87.89 E-value=7.2 Score=34.57 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=77.9
Q ss_pred CceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchh
Q psy3650 34 SEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK 112 (435)
Q Consensus 34 ~~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 112 (435)
.+.+.+..+++..|.+.|.-.|-.+... ++++.+ +|.++.- -+..+++.+.+.+.+..+.......+...+=.-...
T Consensus 72 gv~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~ 149 (286)
T COG1209 72 GVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDE 149 (286)
T ss_pred CcceEEEecCCCCcHHHHHHHHHhhcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcC
Confidence 3567777788889999999999999985 555555 5555555 889999888775555544433333222111000000
Q ss_pred hhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcceeEeeee
Q psy3650 113 LVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNYTIGEVPI 179 (435)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~~~~~~~~ 179 (435)
-. +......+.. .+...-...|+-+|+.++++.+..-....+...+ .+..-..+..|..+.....
T Consensus 150 ~~-~v~~l~EKP~-~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~ 215 (286)
T COG1209 150 DG-KVIGLEEKPK-EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILI 215 (286)
T ss_pred CC-cEEEeEECCC-CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEc
Confidence 00 1111111111 1112222356778999999988433333333333 3444455678887655443
No 261
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=87.62 E-value=14 Score=32.44 Aligned_cols=37 Identities=11% Similarity=0.089 Sum_probs=29.7
Q ss_pred cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 60 TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 60 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
..|+|+.+|+|. .++|+.+..+++.+.+.++++++..
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~ 124 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALA 124 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 468999999999 5899999999999865556665543
No 262
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.40 E-value=4 Score=39.88 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA 284 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a 284 (435)
++|..+. ..+..+++.+.+.. -+|+++-+... +.++++... . +.++..+...|.+.++..++.+.
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~------~~i~vv~~~~~----~~i~~~~~~--~--~~~~~~~~~~g~~~ai~~a~~~l 86 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA------QKVGVVLGHEA----ELVKKLLPE--W--VKIFLQEEQLGTAHAVMCARDFI 86 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC------CcEEEEeCCCH----HHHHHhccc--c--cEEEecCCCCChHHHHHHHHHhc
Confidence 4555543 66777777665521 25666643221 233333221 2 22333455668889999998876
Q ss_pred c-CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEee
Q psy3650 285 T-GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 285 ~-~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
. .+.++++++|. .+....+.++++.+++.+.++.+..
T Consensus 87 ~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~ 125 (448)
T PRK14357 87 EPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILV 125 (448)
T ss_pred CcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4 58999999998 4778889999998866666665543
No 263
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=87.13 E-value=6.5 Score=32.02 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=40.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhh----ccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 259 SEKIVLKPRKKKLGLGTAYMHGLKY----ATGNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 259 ~~~i~~~~~~~n~g~~~a~n~g~~~----a~~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
.+.+.+.--++|.||-..+..-+.. -+-+|++++|+.+.+.++.|-.+.+++
T Consensus 108 PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 108 PVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred CEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 3455555567788888777776664 367999999999999999999888653
No 264
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=87.02 E-value=5.4 Score=34.55 Aligned_cols=61 Identities=13% Similarity=0.248 Sum_probs=40.9
Q ss_pred CceEEEccCC-CCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh--cCCCcEEEE
Q psy3650 34 SEKIVLKPRK-KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ--QENLDVVTG 95 (435)
Q Consensus 34 ~~~i~~~~~~-~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~--~~~~~~v~g 95 (435)
...+.+.... +..|.++++..|+.....+.++++.+|...+.+... +++... +.+..+++.
T Consensus 69 ~~~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (221)
T cd06422 69 GLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLHAWRMDALLLLLP 132 (221)
T ss_pred CceEEEecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHHhccCCCceEEE
Confidence 3456555444 456888999999988766889999999988776554 454443 344444443
No 265
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=87.00 E-value=10 Score=33.80 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHH
Q psy3650 269 KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQ 348 (435)
Q Consensus 269 ~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+..|.+.++..+.+....+.++++++|...+ ..+..+++...+.+.++.+... .+....+ ... ... +.+..
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG--~v~--~d~--~~V~~ 171 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGKKATVTAV--QPPGRFG--ALD--LEG--EQVTS 171 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCCCEEEEEe--cCCCccc--EEE--ECC--CeEEE
Confidence 3467788888888877666777999998764 4578888876666666544321 1111000 000 000 00100
Q ss_pred HhcC--CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650 349 LLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP 403 (435)
Q Consensus 349 ~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p 403 (435)
..-. ..-..+..|..+|++++|+.+.. ....+..|+.-.+...| ++...+
T Consensus 172 ~~Ekp~~~~~~i~~Giyi~~~~il~~l~~----~~~~~~~d~i~~l~~~~-~v~~~~ 223 (254)
T TIGR02623 172 FQEKPLGDGGWINGGFFVLNPSVLDLIDG----DATVWEQEPLETLAQRG-ELSAYE 223 (254)
T ss_pred EEeCCCCCCCeEEEEEEEEcHHHHhhccc----cCchhhhhHHHHHHhCC-CEEEEe
Confidence 0001 01123456788999999966622 11123456777777777 444333
No 266
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=86.95 E-value=0.83 Score=40.62 Aligned_cols=109 Identities=8% Similarity=0.034 Sum_probs=51.9
Q ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceeh
Q psy3650 60 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL 139 (435)
Q Consensus 60 ~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (435)
..+|++++|+|+.+.++.|..++..+ ++..++.+|.+....... ...+.. .......+.... .+|+-.+
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~-~~~~~~yiG~~~~~~~~~----~~~~~~-----~~~~~~~~~~f~-~GGaG~v 154 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKY-DPSEPIYIGRPSGDRPIE----IIHRFN-----PNKSKDSGFWFA-TGGAGYV 154 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS--TTS--EEE-EE-------------------------------EE--GGG-EE
T ss_pred CceEEEEEeCCceecHHHHHHHHhhC-CCccCEEeeeeccCccce----eecccc-----ccccCcCceEee-CCCeeHH
Confidence 35999999999999988888888877 455677777765432210 000000 000001111222 2344578
Q ss_pred hhHHHHHHhhc-----cccc----cCchhhHHHHHHHHh-hcceeEeeee
Q psy3650 140 YKKQVLENLVS-----SCVS----KGYVFQMEMVIRARQ-YNYTIGEVPI 179 (435)
Q Consensus 140 ~~~~~~~~~~~-----~~~~----~~~~~d~~l~~r~~~-~g~~~~~~~~ 179 (435)
++|.+++++.. .+.. ....+|+.+..-+.. .|.++...+.
T Consensus 155 lSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 155 LSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp EEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred HhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 99999998822 1111 134568888776655 7877666553
No 267
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=86.46 E-value=8.6 Score=32.71 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 44 KKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
...|.++++..|..... .+.++++.+|. +.+..+..+++...+.+.++++..
T Consensus 91 ~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~~~t~~~ 145 (200)
T cd02508 91 WYRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGADITVVY 145 (200)
T ss_pred cccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCCCEEEEE
Confidence 45788999988888764 47888999998 556678888887766666665544
No 268
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=86.38 E-value=2.4 Score=41.20 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHhhcc------CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhH-------
Q psy3650 270 KLGLGTAYMHGLKYAT------GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR------- 336 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~------~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------- 336 (435)
..|.+.|+..++.... .+.++++++|.... ..+.++++..++.+.++.+............+....
T Consensus 100 ~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v 178 (436)
T PLN02241 100 FQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178 (436)
T ss_pred ccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCE
Confidence 3677888877765532 47789999999765 458888887766667655443322110000000000
Q ss_pred -HHHHHHH-HHHHHH-----hc-------CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEe
Q psy3650 337 -KLVSRGA-NYLTQL-----LL-------RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEV 402 (435)
Q Consensus 337 -~~~~~~~-~~~~~~-----~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~ 402 (435)
.+..+-. ...... .+ ........+|..+|+++++..+..........+-.|++-++...|.++...
T Consensus 179 ~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~ 258 (436)
T PLN02241 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAY 258 (436)
T ss_pred EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEE
Confidence 0000000 000000 00 000123466789999999987633221111122347777788888887776
Q ss_pred ee
Q psy3650 403 PI 404 (435)
Q Consensus 403 p~ 404 (435)
++
T Consensus 259 ~~ 260 (436)
T PLN02241 259 LF 260 (436)
T ss_pred ee
Confidence 55
No 269
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=86.36 E-value=2.9 Score=36.64 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=33.2
Q ss_pred HHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 53 MHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 53 n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..+++....|+++++++|. .++++.++.+++.+...+.++++
T Consensus 80 ~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 80 YQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 3344445579999999999 78999999999988766667765
No 270
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=86.32 E-value=3 Score=35.30 Aligned_cols=43 Identities=12% Similarity=0.340 Sum_probs=39.4
Q ss_pred CHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650 272 GLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQEN 314 (435)
Q Consensus 272 g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~ 314 (435)
|.-.++-.|+....+++++++-+|.- ++++.+..|.....+.+
T Consensus 73 GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 73 GPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 88999999999999999999999995 89999999999887655
No 271
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=86.20 E-value=5.3 Score=34.97 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=51.1
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC--CEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--NFIIIMDADLSHHPKFIPEMIKLQQ 86 (435)
Q Consensus 9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g--d~i~~lD~D~~~~~~~l~~~~~~~~ 86 (435)
+|+||-....+...+.+.++.. .....+.+.......|.++++..|...... +-++++.+|...+.+ +..+++...
T Consensus 48 ~v~iv~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~ 125 (233)
T cd06425 48 EIILAVNYRPEDMVPFLKEYEK-KLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHK 125 (233)
T ss_pred EEEEEeeeCHHHHHHHHhcccc-cCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHH
Confidence 5555544333333333332211 123345554345567888999988887753 335667899876655 688888776
Q ss_pred cCCCcEEEEe
Q psy3650 87 QENLDVVTGT 96 (435)
Q Consensus 87 ~~~~~~v~g~ 96 (435)
+.++++++..
T Consensus 126 ~~~~~~~~~~ 135 (233)
T cd06425 126 KHGAEGTILV 135 (233)
T ss_pred HcCCCEEEEE
Confidence 6777765544
No 272
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=86.16 E-value=5.8 Score=33.44 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC--EEEEEcCCC-CCCCCcHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN--FIIIMDADL-SHHPKFIPEMIKL 84 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd--~i~~lD~D~-~~~~~~l~~~~~~ 84 (435)
-+||||-..- ..+..+...... +.++++. .+...|.+.++..|+..+.++ .++++-+|. .+.|+.+.++++.
T Consensus 47 ~~vivV~g~~---~~~~~~a~~~~~-~~~~v~n-pd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~ 121 (199)
T COG2068 47 DRVIVVTGHR---VAEAVEALLAQL-GVTVVVN-PDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAA 121 (199)
T ss_pred CeEEEEeCcc---hhhHHHhhhccC-CeEEEeC-cchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence 4788885443 344444443322 3345543 345679999999999999865 999999999 5899999999999
Q ss_pred HhcC
Q psy3650 85 QQQE 88 (435)
Q Consensus 85 ~~~~ 88 (435)
+...
T Consensus 122 ~~~~ 125 (199)
T COG2068 122 FRAR 125 (199)
T ss_pred cccc
Confidence 9655
No 273
>PLN02248 cellulose synthase-like protein
Probab=85.93 E-value=0.63 Score=49.08 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=63.5
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHh----hccCCEEEEEcCCCCC-CCCcHHHHHHHHhc---CCCcEEEEeeeecCC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLK----YATGNFIIIMDADLSH-HPKFIPEMIKLQQQ---ENLDVVTGTRYVGTG 102 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~----~a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~---~~~~~v~g~~~~~~~ 102 (435)
.++|+..+.+- -|++|+|.-++ ...|+||+.+|+|... ++..+.+.+=.+.+ +...+|..++....-
T Consensus 586 ~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~I 665 (1135)
T PLN02248 586 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEGI 665 (1135)
T ss_pred eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCCC
Confidence 45666444433 48999998886 4568999999999965 55588888877765 355667777655433
Q ss_pred CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650 103 GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
.... ++..+. .-++.....-+-+...+...|.-.++||+++-..
T Consensus 666 ~k~D-~Ygn~~-~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~ 709 (1135)
T PLN02248 666 DPSD-RYANHN-TVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGF 709 (1135)
T ss_pred CCCC-ccCCcc-eeeeeeeeccccccCCccccccCceeeehhhcCc
Confidence 2211 111111 1111111122223333333344457899888654
No 274
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=85.79 E-value=1.3 Score=37.72 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=40.9
Q ss_pred CeEEEEEeCCCCcC--hHHHHHHHHHHhCCceEEEccCCC-------CCCH---HHHHHHHHhhcc-------CCEEEEE
Q psy3650 7 PYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKK-------KLGL---GTAYMHGLKYAT-------GNFIIIM 67 (435)
Q Consensus 7 ~~EiivvDd~S~d~--t~~i~~~~~~~~~~~~i~~~~~~~-------n~g~---~~a~n~gl~~a~-------gd~i~~l 67 (435)
+.-.|||+|+++-. +.+++++. .+...++.... +..+ ...+|.|+++.+ ..+|.|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFa 84 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLRRS-----GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFA 84 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHHHH-----TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE-
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHc-----CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEEC
Confidence 78899999987432 44555543 23344332221 1112 457999998887 2688899
Q ss_pred cCCCCCCCCcHHHH
Q psy3650 68 DADLSHHPKFIPEM 81 (435)
Q Consensus 68 D~D~~~~~~~l~~~ 81 (435)
|+|..++...+++|
T Consensus 85 DDdNtYdl~LF~em 98 (207)
T PF03360_consen 85 DDDNTYDLRLFDEM 98 (207)
T ss_dssp -TTSEE-HHHHHHH
T ss_pred CCCCeeeHHHHHHH
Confidence 99999988777773
No 275
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=85.69 E-value=16 Score=34.75 Aligned_cols=163 Identities=12% Similarity=0.159 Sum_probs=94.1
Q ss_pred EEEecCCCCCCHHHHHHHHHhhc-cC-C-EEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH
Q psy3650 262 IVLKPRKKKLGLGTAYMHGLKYA-TG-N-FIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK 337 (435)
Q Consensus 262 i~~~~~~~n~g~~~a~n~g~~~a-~~-d-~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 337 (435)
+.++...+..|-++|+.++...- .+ + .++++.+|.- +.++.|+.|++.....+.++.+-.-...+....++ ..+.
T Consensus 69 v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGR-Ivr~ 147 (460)
T COG1207 69 VEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGR-IVRD 147 (460)
T ss_pred ceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcce-EEEc
Confidence 44444666889999999999986 33 3 6999999995 89999998988776555555443333332221111 0110
Q ss_pred HHHHHHHHHH---HHhcCCCccccccceeeecHHHHHHhhhc---ccCcccchhhHHHHHHHHCCCcEEEeeeEEeeccc
Q psy3650 338 LVSRGANYLT---QLLLRPGVSDLTGSFRLYKKQVLENLVSS---CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVY 411 (435)
Q Consensus 338 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~ 411 (435)
-........- .-.....+..+.+|.++|+.+.+.+.... ....+=++=+|+.-.+...|.++..+-..-.....
T Consensus 148 ~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~ 227 (460)
T COG1207 148 GNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVL 227 (460)
T ss_pred CCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhc
Confidence 0000000000 00111345567788899999877776422 22233345688888899999998877665333333
Q ss_pred cc-ccCCHHHHHHHH
Q psy3650 412 GE-SKLGGTEIFQFA 425 (435)
Q Consensus 412 ~~-s~~~~~~~~~~~ 425 (435)
|- ++.-+...-+++
T Consensus 228 GVN~R~qLa~~e~~~ 242 (460)
T COG1207 228 GVNDRVQLAEAERIM 242 (460)
T ss_pred CcCcHHHHHHHHHHH
Confidence 43 344444444333
No 276
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=85.54 E-value=5.2 Score=39.52 Aligned_cols=181 Identities=10% Similarity=0.168 Sum_probs=92.9
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|.-+ ...+..+++.+.+. .--+|+++-+...+ .++++... ..+.++..+...|.+.++..|++...
T Consensus 30 lpi~g-kpli~~~l~~l~~~-----gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~~l~ 96 (481)
T PRK14358 30 HPVAG-RPMVAWAVKAARDL-----GARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLSGASALT 96 (481)
T ss_pred cEECC-eeHHHHHHHHHHhC-----CCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHHHHHHhh
Confidence 34433 46666767666442 12367766543222 23333221 23445555566788899988888753
Q ss_pred --CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------c
Q psy3650 286 --GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------V 355 (435)
Q Consensus 286 --~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 355 (435)
.+-++++++|. .+.+..+.++++...+.+.++.+......+....+ .... ... ..+....-..+ .
T Consensus 97 ~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG--~v~~-d~~--g~v~~~~Ek~~~~~~~~~~ 171 (481)
T PRK14358 97 EGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYG--RIVR-GAD--GAVERIVEQKDATDAEKAI 171 (481)
T ss_pred CCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCce--EEEE-CCC--CCEEEEEECCCCChhHhhC
Confidence 23367799998 57888899999887666655543322222211110 0000 000 00000000000 1
Q ss_pred cccccceeeecHH---HHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 356 SDLTGSFRLYKKQ---VLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 356 ~~~~~~~~~~~r~---~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
.....|..+|+.+ +++.+........+. =.|+.-.+.+.|.++...+..
T Consensus 172 ~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~-l~d~i~~~~~~g~~i~~~~~~ 223 (481)
T PRK14358 172 GEFNSGVYVFDARAPELARRIGNDNKAGEYY-LTDLLGLYRAGGAQVRAFKLS 223 (481)
T ss_pred CeEEEEEEEEchHHHHHHHhcCCCccCCeEE-HHHHHHHHHHCCCeEEEEecC
Confidence 1234677899944 455552111111232 247777788999888777644
No 277
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=85.31 E-value=14 Score=33.08 Aligned_cols=143 Identities=10% Similarity=0.091 Sum_probs=75.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc--cHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH
Q psy3650 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK 337 (435)
Q Consensus 260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~--~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 337 (435)
..+.++..+...|.+.++..+......+-++++.+|..+..+ .+.++++.....+.+++.......... ..+.....
T Consensus 93 ~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~ 171 (267)
T cd02541 93 ANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDV-SKYGIVKG 171 (267)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcC-ccceEEEe
Confidence 355555555567999999999998866778888899876554 589999877654555433322211110 00111000
Q ss_pred HH-HHHHHHHHHHhcCC-----CccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeee
Q psy3650 338 LV-SRGANYLTQLLLRP-----GVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 338 ~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
-. ......+....-.. .-.....|+.+|++++|..+...... .+..+-.++.-++.+.| ++...++
T Consensus 172 d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~ 244 (267)
T cd02541 172 EKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVF 244 (267)
T ss_pred ecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEe
Confidence 00 00000011111111 11234567789999999888431111 11122346666677777 7777665
No 278
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=85.28 E-value=3.4 Score=35.05 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 46 LGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
.|.+.++..|++.+. +++++++-+|. .+.++.++.+++.+. ..+.++++.
T Consensus 74 ~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~--~~~~vi~p~ 126 (195)
T TIGR03552 74 PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAAT--EGDVVIAPD 126 (195)
T ss_pred CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcc--cCCEEEEec
Confidence 489999999998764 46999999999 579999999999874 345566654
No 279
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=85.28 E-value=21 Score=36.43 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 47 GLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 47 g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
|||.++-.|+-.|+ .+||-|+|+|..++ +...+.+.
T Consensus 148 gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~ 186 (694)
T PRK14502 148 GKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAK 186 (694)
T ss_pred CcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHH
Confidence 89999999998887 39999999999664 44444443
No 280
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=84.89 E-value=6.5 Score=33.92 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=36.5
Q ss_pred CHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCC
Q psy3650 47 GLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENL 90 (435)
Q Consensus 47 g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~ 90 (435)
|.+.+...|++.. ..++++++++|. .++++.++.+++.+.+.+.
T Consensus 79 ~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 79 TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 5678899999886 468999999999 6899999999998855543
No 281
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=84.69 E-value=7 Score=33.07 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=42.2
Q ss_pred EEecCCCCCCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeee
Q psy3650 263 VLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTR 322 (435)
Q Consensus 263 ~~~~~~~n~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~ 322 (435)
.++.++ ..|.+.++..|++... ++.++++-+|.- ++++.+.+++..+++ .+.++++.
T Consensus 67 ~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~--~~~vi~p~ 126 (195)
T TIGR03552 67 PVLRDP-GPGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE--GDVVIAPD 126 (195)
T ss_pred EEEecC-CCCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc--CCEEEEec
Confidence 334344 3489999999998764 468999999986 899999999998753 34455543
No 282
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=84.59 E-value=10 Score=31.50 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNF 288 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~ 288 (435)
...++.+++.+.... -+|+|+-+.. .. +. . ..+.+. .......|...++-.|++.+ +.++
T Consensus 15 ~~ll~~~~~~l~~~~------~~iivv~~~~-~~-------~~-~-~~~~~i-~d~~~g~gpl~~~~~gl~~~~~~~~~~ 77 (178)
T PRK00576 15 TTLVEHVVGIVGQRC------APVFVMAAPG-QP-------LP-E-LPAPVL-RDELRGLGPLPATGRGLRAAAEAGARL 77 (178)
T ss_pred cCHHHHHHHHHhhcC------CEEEEECCCC-cc-------cc-c-CCCCEe-ccCCCCCCcHHHHHHHHHHHHhcCCCE
Confidence 455677776554322 2777775432 11 10 1 122332 22333456667777677654 5799
Q ss_pred EEEEeCCCC-CCCccHHHHHHHHhcCCCceE
Q psy3650 289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVV 318 (435)
Q Consensus 289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v 318 (435)
++++=+|.- ++++.+..++......+..++
T Consensus 78 ~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~ 108 (178)
T PRK00576 78 AFVCAVDMPYLTVELIDDLARPAAQTDAEVV 108 (178)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE
Confidence 999999995 899999999987655444433
No 283
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=84.45 E-value=5.7 Score=38.99 Aligned_cols=183 Identities=10% Similarity=0.130 Sum_probs=94.7
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA 284 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a 284 (435)
++|..+. ..+...++++.+ .. --+++++-....+ ++.+.+ .... .+.+...++..|.+.++..+++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~----~g-i~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~a~~~l 92 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAARE----AG-AGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVACAAPAL 92 (459)
T ss_pred eceeCCc-cHHHHHHHHHHh----cC-CCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHHHHHHh
Confidence 3444443 556666666543 11 2366666543222 222223 2211 344444555678889999998876
Q ss_pred c--CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC-------CC
Q psy3650 285 T--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR-------PG 354 (435)
Q Consensus 285 ~--~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 354 (435)
. .+.++++++|. .+++..+.++++.....+.++.+......... .+.... +... ..+....-. ..
T Consensus 93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~--~~g~v~-~d~~--g~v~~~~ek~~~~~~~~~ 167 (459)
T PRK14355 93 DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPF--GYGRIV-RDAD--GRVLRIVEEKDATPEERS 167 (459)
T ss_pred hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCC--cCCEEE-EcCC--CCEEEEEEcCCCChhHhh
Confidence 4 47899999998 57888999999987655555433321111110 000000 0000 000000000 00
Q ss_pred ccccccceeeecHHHHHHhhh-ccc--CcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 355 VSDLTGSFRLYKKQVLENLVS-SCV--SKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 355 ~~~~~~~~~~~~r~~~~~~~~-~~~--~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
.....+|..+|+++.+.+... ... .....+-.|+.-.+.+.|.++...+.
T Consensus 168 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~ 220 (459)
T PRK14355 168 IREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPV 220 (459)
T ss_pred ccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEc
Confidence 123456778999987655321 111 11112235777788999988877665
No 284
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=84.32 E-value=3.5 Score=37.34 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=54.4
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHhCCceEEEcc------------CCC-----CCCHHHHHHHHHhhccC--CEEEEEcC
Q psy3650 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP------------RKK-----KLGLGTAYMHGLKYATG--NFIIIMDA 69 (435)
Q Consensus 9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~------------~~~-----n~g~~~a~n~gl~~a~g--d~i~~lD~ 69 (435)
-+++-+.++++.+.++++.+.+. ..+.+..++ ... ..|...+.|.++...++ +|++|+|-
T Consensus 34 ~~~~Y~~~~~~~~~~vL~~Y~~~-g~v~~~~w~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~Di 112 (285)
T PF01697_consen 34 HFYFYDNSSSPSVRKVLKEYERS-GYVEVIPWPLRPKFPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDI 112 (285)
T ss_pred EEEEEEccCCHHHHHhHHHHhhc-CeEEEEEcccccccCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEecc
Confidence 46677778899999999998764 334444432 011 13567888999888874 89999999
Q ss_pred CCCCCCCc----HHHHHHHHhc
Q psy3650 70 DLSHHPKF----IPEMIKLQQQ 87 (435)
Q Consensus 70 D~~~~~~~----l~~~~~~~~~ 87 (435)
|+.+-|.. .+.+.+.+++
T Consensus 113 DE~lvP~~~~~~~~~~~~~l~~ 134 (285)
T PF01697_consen 113 DEFLVPTNAPTYPEEFEDLLRE 134 (285)
T ss_pred ccEEEeccccchhhHHHHHHhh
Confidence 99766654 6666666644
No 285
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=84.21 E-value=13 Score=28.90 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc--cCCEEEEEcCCC-CCCCCcHHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADL-SHHPKFIPEMI 82 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a--~gd~i~~lD~D~-~~~~~~l~~~~ 82 (435)
..++++|.=++..+.....-... .+...+. .+...+.|.-++.+++.+ ..+-++++.+|. .++++.|.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~---~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~ 82 (122)
T PF09837_consen 9 DGADVVLAYTPDGDHAAFRQLWL---PSGFSFF---PQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF 82 (122)
T ss_dssp SSSEEEEEE----TTHHHHHHHH----TTSEEE---E--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred CCcCEEEEEcCCccHHHHhcccc---CCCCEEe---ecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 34777777777766544321111 1233333 356667899999999888 347999999999 78889999999
Q ss_pred HHHhcCCCcEEEEee
Q psy3650 83 KLQQQENLDVVTGTR 97 (435)
Q Consensus 83 ~~~~~~~~~~v~g~~ 97 (435)
+.+++ .++|.|+.
T Consensus 83 ~~L~~--~d~VlgPa 95 (122)
T PF09837_consen 83 EALQR--HDVVLGPA 95 (122)
T ss_dssp HHTTT---SEEEEEB
T ss_pred HHhcc--CCEEEeec
Confidence 99843 48898875
No 286
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=84.03 E-value=7.1 Score=34.42 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=39.1
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
..+++...+...|.+.... ++... ..++++++++|. .++++.+..+++...+.+.++++..
T Consensus 63 ~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~ 127 (245)
T PRK05450 63 GEVVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLA 127 (245)
T ss_pred CEEEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeee
Confidence 3455433333345444333 33222 358999999999 7899999999998866656666553
No 287
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=83.90 E-value=2.7 Score=36.81 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=36.3
Q ss_pred CHHHHHHHHHhhcc-CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEE
Q psy3650 47 GLGTAYMHGLKYAT-GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVV 93 (435)
Q Consensus 47 g~~~a~n~gl~~a~-gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v 93 (435)
+...+.-.|+.... .++++++|+|. .++++.+..+++.+.+.+..++
T Consensus 83 ~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~ 131 (230)
T PRK13385 83 ERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAIC 131 (230)
T ss_pred hHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEE
Confidence 45677888887764 57899999999 7799999999998865553333
No 288
>PLN02436 cellulose synthase A
Probab=83.66 E-value=0.79 Score=48.20 Aligned_cols=51 Identities=12% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhc----cCCEEEEEeCCC-CCCCccHHHHHHHHhcC----CCceEEeeeE
Q psy3650 273 LGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQE----NLDVVTGTRY 323 (435)
Q Consensus 273 ~~~a~n~g~~~a----~~d~v~~~d~D~-~~~~~~l~~~~~~~~~~----~~~~v~~~~~ 323 (435)
|+.|+|..++.+ ++.||+-+|+|. +-.+..+.+.+-.+.++ +...|.-+..
T Consensus 550 KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQr 609 (1094)
T PLN02436 550 KAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQR 609 (1094)
T ss_pred hhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcc
Confidence 789999999864 789999999999 58888998888887654 3445554443
No 289
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.33 E-value=28 Score=33.75 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=82.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 290 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~ 290 (435)
....+...++.+.+.. -+++++-. .. ..++.+.+.+.++.+++.....+...|.+.++... ....|.++
T Consensus 29 gkPli~~~i~~l~~~~------~~i~Ivv~-~~--~~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~~--~~~~d~vl 97 (430)
T PRK14359 29 GKPMLFYILKEAFAIS------DDVHVVLH-HQ--KERIKEAVLEYFPGVIFHTQDLENYPGTGGALMGI--EPKHERVL 97 (430)
T ss_pred CccHHHHHHHHHHHcC------CcEEEEEC-CC--HHHHHHHHHhcCCceEEEEecCccCCCcHHHHhhc--ccCCCeEE
Confidence 4556777777765521 14444432 22 12222223333334444433222335666666542 22468999
Q ss_pred EEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc-C--CCccccccceeeec
Q psy3650 291 IMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-R--PGVSDLTGSFRLYK 366 (435)
Q Consensus 291 ~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~ 366 (435)
++++|.. ..++.+.++.+ .+.++++......+... +.....-..+......+... . .......+|+.+|+
T Consensus 98 v~~gD~p~~~~~~l~~l~~----~~~~~~v~~~~~~~~~~--~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~ 171 (430)
T PRK14359 98 ILNGDMPLVEKDELEKLLE----NDADIVMSVFHLADPKG--YGRVVIENGQVKKIVEQKDANEEELKIKSVNAGVYLFD 171 (430)
T ss_pred EEECCccCCCHHHHHHHHh----CCCCEEEEEEEcCCCcc--CcEEEEcCCeEEEEEECCCCCcccccceEEEeEEEEEE
Confidence 9999984 56666665542 34454444322222110 00000000000000000000 0 01123456688999
Q ss_pred HHHHHHhhhcccC---cccchhhHHHHHHHHCCCcEEEeee
Q psy3650 367 KQVLENLVSSCVS---KGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 367 r~~~~~~~~~~~~---~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
+++++++...... ..-.+-.|+.-++.+.|.++..+..
T Consensus 172 ~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~ 212 (430)
T PRK14359 172 RKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFV 212 (430)
T ss_pred HHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEc
Confidence 9999887322111 1111224666788889988876654
No 290
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=83.27 E-value=33 Score=31.03 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=58.0
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC---C------CCC
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK---K------KLG 272 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~---~------n~g 272 (435)
++||....|=...+..++.|+ +.....++.+.|++|+.+++..+.+.+..... +..+..+..+ . +..
T Consensus 3 ~~iv~~~~~y~~~~~~~i~Si---l~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~~~~~~~ 78 (280)
T cd06431 3 VAIVCAGYNASRDVVTLVKSV---LFYRRNPLHFHLITDEIARRILATLFQTWMVP-AVEVSFYNAEELKSRVSWIPNKH 78 (280)
T ss_pred EEEEEccCCcHHHHHHHHHHH---HHcCCCCEEEEEEECCcCHHHHHHHHHhcccc-CcEEEEEEhHHhhhhhccCcccc
Confidence 456666533234444445554 44445679999999988777766665543332 3355544431 1 111
Q ss_pred HHHH---HHHHHhh-c--cCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 273 LGTA---YMHGLKY-A--TGNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 273 ~~~a---~n~g~~~-a--~~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
.+.. .+..+.. - .-|=++.+|+|.++..+ |.++.+.+
T Consensus 79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~~ 121 (280)
T cd06431 79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKIF 121 (280)
T ss_pred hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHHh
Confidence 1211 1222222 1 35889999999987644 77777763
No 291
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=83.27 E-value=11 Score=33.45 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=51.5
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
-+|+|+-....+...+.+.+... .....+.+....+..|.++++..+..... .+.++++.+|...+. .+..+++.
T Consensus 48 ~~i~iv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~ 125 (257)
T cd06428 48 KEVLLIGFYPESVFSDFISDAQQ-EFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDF-PLQELLEF 125 (257)
T ss_pred cEEEEEecCCHHHHHHHHHhccc-ccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCC-CHHHHHHH
Confidence 36666644332222233322111 12335555545556788888777766542 477888999987654 58888887
Q ss_pred HhcCCCcEEEEe
Q psy3650 85 QQQENLDVVTGT 96 (435)
Q Consensus 85 ~~~~~~~~v~g~ 96 (435)
..+.++++++..
T Consensus 126 h~~~~~~~tl~~ 137 (257)
T cd06428 126 HKKHGASGTILG 137 (257)
T ss_pred HHHcCCCEEEEE
Confidence 766777765444
No 292
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=83.09 E-value=5.6 Score=38.83 Aligned_cols=178 Identities=12% Similarity=0.228 Sum_probs=90.8
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+ ...+..+++.+.+. . .-+++++-..-.+ . +++..... .+.++..++..|.+.++..++....
T Consensus 23 ~~i~g-kpli~~~l~~l~~~----g-~~~iiiv~~~~~~---~-i~~~~~~~---~i~~~~~~~~~G~~~ai~~a~~~l~ 89 (451)
T TIGR01173 23 HPLAG-KPMLEHVIDAARAL----G-PQKIHVVYGHGAE---Q-VRKALANR---DVNWVLQAEQLGTGHAVLQALPFLP 89 (451)
T ss_pred ceeCC-ccHHHHHHHHHHhC----C-CCeEEEEECCCHH---H-HHHHhcCC---CcEEEEcCCCCchHHHHHHHHHhcC
Confidence 34433 46666766666441 1 2265555442222 2 22322222 2333334545688888999988874
Q ss_pred -CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC-------Ccc
Q psy3650 286 -GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP-------GVS 356 (435)
Q Consensus 286 -~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 356 (435)
.+.++++++|. .++++.+.++++...+.+..+++ ........ +.... .... ..+....-.. ...
T Consensus 90 ~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~---~g~v~-~d~~--g~v~~~~ek~~~~~~~~~~~ 162 (451)
T TIGR01173 90 DDGDVLVLYGDVPLISAETLERLLEAHRQNGITLLT-AKLPDPTG---YGRII-REND--GKVTAIVEDKDANAEQKAIK 162 (451)
T ss_pred CCCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEE-EecCCCCC---CCEEE-EcCC--CCEEEEEEcCCCChHHhcCc
Confidence 47899999998 57888999999877554322222 22111100 00000 0000 0000000000 011
Q ss_pred ccccceeeecHHHHHHhhhcccC----cccchhhHHHHHHHHCCCcEEEeee
Q psy3650 357 DLTGSFRLYKKQVLENLVSSCVS----KGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~~~~----~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
...+|+.+|+.+.+.+....... ..+ +-.++...+.+.|+++..++.
T Consensus 163 ~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~-~~~~~~~~l~~~g~~v~~~~~ 213 (451)
T TIGR01173 163 EINTGVYVFDGAALKRWLPKLSNNNAQGEY-YLTDVIALAVADGETVRAVQV 213 (451)
T ss_pred EEEEEEEEEeHHHHHHHHHhcccccccCcE-eHHHHHHHHHHCCCeEEEEEc
Confidence 34566789999986554211111 112 235777778889988877654
No 293
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=83.06 E-value=11 Score=33.11 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=42.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..+.+....+..|.++++..+......+.++++.+|..+.+..+..+++...+.+.++++
T Consensus 73 ~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~ 132 (240)
T cd02538 73 IRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATV 132 (240)
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEE
Confidence 345544444567899999999888776667777899877666788888766555555544
No 294
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=83.06 E-value=1.6 Score=44.24 Aligned_cols=111 Identities=13% Similarity=0.071 Sum_probs=64.0
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC----CcEEEEeeeecC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQEN----LDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~----~~~v~g~~~~~~ 101 (435)
.++|+..+.+- -|++|+|.-++.+ .+.||+.+|+|. .-+|..+.+.+=.+.++. ..+|..++...+
T Consensus 167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~~ 246 (720)
T PF03552_consen 167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFDG 246 (720)
T ss_pred eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeCC
Confidence 56666444433 4899999988654 489999999999 667888888887775543 555666665543
Q ss_pred CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650 102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 148 (435)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (435)
-+... .+..+.. -.+.....-+-+...+...|....+||+++-..
T Consensus 247 i~~~d-~y~~~~~-~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~ 291 (720)
T PF03552_consen 247 IDKND-RYGNQNR-VFFDINMRGLDGLQGPFYVGTGCFFRREALYGF 291 (720)
T ss_pred CCcCC-CCCccce-eeeeccccccccCCCceeeecCcceechhhhCC
Confidence 32211 1111111 111111111223333333444457899998755
No 295
>PLN03153 hypothetical protein; Provisional
Probab=82.98 E-value=13 Score=36.23 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=59.3
Q ss_pred cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650 285 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL 364 (435)
Q Consensus 285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (435)
..+|++++|+|+.+..+.|.+++..+. +.....+|......... ..++..+ ..+|+..+
T Consensus 210 d~kWfVf~DDDTyf~~~NLv~~Ls~YD-ptkp~YIGs~Se~~~qn-------------------~~f~~~f-A~GGAG~~ 268 (537)
T PLN03153 210 DVRWFVLGDDDTIFNADNLVAVLSKYD-PSEMVYVGGPSESHSAN-------------------SYFSHNM-AFGGGGIA 268 (537)
T ss_pred CCCEEEEecCCccccHHHHHHHHhhcC-CCCCEEecccccccccc-------------------ccccccc-ccCCceEE
Confidence 469999999999987776777776663 45556666553221100 0001122 23455579
Q ss_pred ecHHHHHHhhhc---c---cCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 365 YKKQVLENLVSS---C---VSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 365 ~~r~~~~~~~~~---~---~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
+++.+++.+... . ....+..|.-|..=+.+.|.++...|-
T Consensus 269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~g 314 (537)
T PLN03153 269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPG 314 (537)
T ss_pred EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCC
Confidence 999777776321 1 123466787766668888888754443
No 296
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=82.53 E-value=6.3 Score=34.97 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=48.7
Q ss_pred hCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCC--CCcHHHHHHHHhcCCCcEEE
Q psy3650 32 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH--PKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 32 ~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~--~~~l~~~~~~~~~~~~~~v~ 94 (435)
-+..++.++++.+..|.|.|..+|=.+..++-++.+=+|+.+. +..+.+|++..++.+..++.
T Consensus 94 ~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~ 158 (291)
T COG1210 94 PPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIG 158 (291)
T ss_pred ccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEE
Confidence 3457889999999999999999999999887555555666554 57899999999776654443
No 297
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=82.52 E-value=8.1 Score=36.59 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 46 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
.|...+...|++....++++++++|. .++++.++.+++.+...+.++++.
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 58888899999998889999999998 679999999999876666666653
No 298
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=81.96 E-value=48 Score=31.53 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=38.3
Q ss_pred CHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeE
Q psy3650 272 GLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRY 323 (435)
Q Consensus 272 g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~ 323 (435)
+...++..|++....|++++.|+|-- ++++.+.++++.+.+ .+.++....
T Consensus 82 ~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~p 132 (378)
T PRK09382 82 TRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALP 132 (378)
T ss_pred hHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEE
Confidence 45677888888877799999999975 889999999998754 344444433
No 299
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=81.95 E-value=1.5 Score=41.74 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhC-----Cc-eEEEccCCCC----CCHH----HHHHHHHhhccCCEEEEEcCCCCC
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYG-----SE-KIVLKPRKKK----LGLG----TAYMHGLKYATGNFIIIMDADLSH 73 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~-----~~-~i~~~~~~~n----~g~~----~a~n~gl~~a~gd~i~~lD~D~~~ 73 (435)
+.|||-.||+...|.++++++..... .. .+.+.+.+.+ ++.+ .|++..+..-..+.++++.+|..+
T Consensus 125 fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~i 204 (434)
T PF03071_consen 125 FPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEI 204 (434)
T ss_dssp S-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE
T ss_pred ccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCccc
Confidence 78999999999999999988854311 00 1111111101 1112 233343433346899999999999
Q ss_pred CCCcHHHHHHHH
Q psy3650 74 HPKFIPEMIKLQ 85 (435)
Q Consensus 74 ~~~~l~~~~~~~ 85 (435)
.|++++-+.+.+
T Consensus 205 sPDFf~Yf~~~~ 216 (434)
T PF03071_consen 205 SPDFFEYFSATL 216 (434)
T ss_dssp -TTHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 999887666554
No 300
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=81.70 E-value=6.1 Score=39.04 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHhhcc---CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 42 RKKKLGLGTAYMHGLKYAT---GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
.+...|.+.+.-.|+.... .++++++++|. .+++..+.++++...+.+.++++
T Consensus 77 ~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v 133 (482)
T PRK14352 77 QDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTV 133 (482)
T ss_pred CCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEE
Confidence 4555688888888888754 37899999998 57888999999987666655543
No 301
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=81.18 E-value=23 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=41.2
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.+.+....+..|.+.++..+.....++ ++++.+|. +.+..+..+++...+.+..+++..
T Consensus 77 ~~~~~~~~~~~gt~~al~~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 77 DEVTIVLDEDMGTADSLRHIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHDASLTVLL 135 (214)
T ss_pred eEEEecCCCCcChHHHHHHHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccCCcEEEEE
Confidence 344444566789999999888876555 67788885 555667888887766666655443
No 302
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=81.12 E-value=11 Score=32.97 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=38.6
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccC--CEEEEEcCCC-CCCCCcHHHHHHHHhcC-CCcEEEE
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATG--NFIIIMDADL-SHHPKFIPEMIKLQQQE-NLDVVTG 95 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~g--d~i~~lD~D~-~~~~~~l~~~~~~~~~~-~~~~v~g 95 (435)
..+++.......|.++ .-.++..... |+++++++|. .++++.+..+++...+. ++++++.
T Consensus 63 ~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~ 126 (239)
T cd02517 63 GKVVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATL 126 (239)
T ss_pred CEEEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 3454433233345544 4444555544 8999999999 78899999999887554 5665443
No 303
>KOG1476|consensus
Probab=80.80 E-value=6.7 Score=35.34 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=46.7
Q ss_pred CeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccCCCCCC-----HHHHHHHHHhhcc---------CCEEEEEcCC
Q psy3650 7 PYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-----LGTAYMHGLKYAT---------GNFIIIMDAD 70 (435)
Q Consensus 7 ~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g-----~~~a~n~gl~~a~---------gd~i~~lD~D 70 (435)
+.-+|||.||+ +..+..++++-+ +...++......+ .-..+|.|+.+.+ ..+|.|.|+|
T Consensus 117 nLhWIVVEd~~~~~p~v~~~L~rtg-----l~ythl~~~t~~~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDd 191 (330)
T KOG1476|consen 117 NLHWIVVEDGEGTTPEVSGILRRTG-----LPYTHLVHKTPMGYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDD 191 (330)
T ss_pred CeeEEEEecCCCCCHHHHHHHHHcC-----CceEEEeccCCCCCccccchhHHHHHHHHHHHhcccccccceEEEEccCC
Confidence 67899999996 233445554432 2222222222222 2467999998876 3689999999
Q ss_pred CCCCCCcHHHHHHHH
Q psy3650 71 LSHHPKFIPEMIKLQ 85 (435)
Q Consensus 71 ~~~~~~~l~~~~~~~ 85 (435)
..++-+.+++ ++..
T Consensus 192 N~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 192 NTYDLELFEE-IRNV 205 (330)
T ss_pred cchhHHHHHH-Hhcc
Confidence 9999888877 4444
No 304
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=80.33 E-value=6.5 Score=33.53 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhc
Q psy3650 44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~ 87 (435)
...|...+...|+.....++++++++|. .++++.++.+++...+
T Consensus 76 ~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 76 PSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 3468889999999998889999999999 6799999999998754
No 305
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.08 E-value=9.9 Score=37.10 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CCEE
Q psy3650 212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFI 289 (435)
Q Consensus 212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v 289 (435)
...++.+++.+.+. . .-+++++-....+. +.++..... ..+.++......|.+.++..+++... .+.+
T Consensus 33 kpli~~~l~~l~~~----g-i~~ivvv~~~~~~~----i~~~~~~~~-~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~ 102 (446)
T PRK14353 33 RPMLAHVLAAAASL----G-PSRVAVVVGPGAEA----VAAAAAKIA-PDAEIFVQKERLGTAHAVLAAREALAGGYGDV 102 (446)
T ss_pred chHHHHHHHHHHhC----C-CCcEEEEECCCHHH----HHHHhhccC-CCceEEEcCCCCCcHHHHHHHHHHHhccCCCE
Confidence 35666666666442 1 22666554432222 222222211 12222223446687888888887753 5778
Q ss_pred EEEeCCC-CCCCccHHHHHHHHhcCCCceEEe
Q psy3650 290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
+++++|. .++++.+..+++..++ +.++++.
T Consensus 103 lv~~~D~P~i~~~~l~~l~~~~~~-~~~~~i~ 133 (446)
T PRK14353 103 LVLYGDTPLITAETLARLRERLAD-GADVVVL 133 (446)
T ss_pred EEEeCCcccCCHHHHHHHHHhHhc-CCcEEEE
Confidence 8899998 6889999999986643 4555443
No 306
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=80.00 E-value=18 Score=32.88 Aligned_cols=59 Identities=12% Similarity=0.167 Sum_probs=41.2
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..+.+..+++..|.++|+-.|..+... +++++ -+|+.+.+..+..+++...+.+.++++
T Consensus 72 ~~i~~~~q~~~~Gta~al~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~~~~~ti 131 (286)
T TIGR01207 72 VNLSYAVQPSPDGLAQAFIIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAAARESGATV 131 (286)
T ss_pred ceEEEEEccCCCCHHHHHHHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHHhcCCCcEE
Confidence 456665566778999999999988764 45554 588777677788888766555555533
No 307
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=79.95 E-value=13 Score=32.03 Aligned_cols=43 Identities=12% Similarity=0.230 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 47 GLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 47 g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
+...+...|+... ..|+++++++|. .++++.+..+++.+.+.+
T Consensus 76 ~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 76 TRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 4567788888877 679999999999 689999999999886543
No 308
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=79.74 E-value=27 Score=32.00 Aligned_cols=58 Identities=16% Similarity=0.178 Sum_probs=39.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCC-------CccHHHHHHHHhcCCCceE
Q psy3650 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH-------PKFIPEMIKLQQQENLDVV 318 (435)
Q Consensus 261 ~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~-------~~~l~~~~~~~~~~~~~~v 318 (435)
.+.........|.+.|+..+......+-++++.+|..++ ...+..+++...+.+.+.+
T Consensus 103 ~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl 167 (302)
T PRK13389 103 TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQI 167 (302)
T ss_pred eEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEE
Confidence 344443445678899988888776545567778998764 3678889887665555533
No 309
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=79.73 E-value=20 Score=31.16 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHhhc----cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 45 KLGLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 45 n~g~~~a~n~gl~~a----~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
..|...+...|++.. ..|+|+++++|. ...++.+..+++.+.+.++|.+++..
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~ 132 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVT 132 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEee
Confidence 457777888888765 269999999999 66889999999999777788887754
No 310
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.53 E-value=8.1 Score=37.55 Aligned_cols=95 Identities=14% Similarity=0.277 Sum_probs=59.3
Q ss_pred CCeEEEEEeCCCCcChHHHHH-----HHHHHh-CCceEEEccCCCCCC-HHHHHHHHHhh--ccCCEEEEEcCCCCCCCC
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAK-----QLQSIY-GSEKIVLKPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSHHPK 76 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~-----~~~~~~-~~~~i~~~~~~~n~g-~~~a~n~gl~~--a~gd~i~~lD~D~~~~~~ 76 (435)
.+|.+.|+.| |.|.-...++ +++++. ..-+|.|-+..+|.| |+++...=... ..++|.+.+|+|..+..+
T Consensus 178 ~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd 256 (736)
T COG2943 178 EHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGD 256 (736)
T ss_pred ccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeeehHhhhhcccccCHHHHHHHhCcccceEEEeecccccCch
Confidence 3588999977 4444222222 333332 223566644444544 34433322222 235999999999999999
Q ss_pred cHHHHHHHHhc-CCCcEEEEeeeecC
Q psy3650 77 FIPEMIKLQQQ-ENLDVVTGTRYVGT 101 (435)
Q Consensus 77 ~l~~~~~~~~~-~~~~~v~g~~~~~~ 101 (435)
++.++++..+. ++++++...+...+
T Consensus 257 ~lvrLv~~ME~~P~aGlIQt~P~~~g 282 (736)
T COG2943 257 CLVRLVRLMEANPDAGLIQTSPKASG 282 (736)
T ss_pred HHHHHHHHHhhCCCCceeecchhhcC
Confidence 99999999976 56888887764443
No 311
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=78.97 E-value=14 Score=32.23 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=39.1
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.+.++......|.+.++..|..... .++ +++.+|..++++ +..+++...+.+.++++..
T Consensus 73 ~i~~~~~~~~~g~~~sl~~a~~~i~~~~~-li~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 132 (236)
T cd04189 73 RITYILQEEPLGLAHAVLAARDFLGDEPF-VVYLGDNLIQEG-ISPLVRDFLEEDADASILL 132 (236)
T ss_pred eEEEEECCCCCChHHHHHHHHHhcCCCCE-EEEECCeecCcC-HHHHHHHHHhcCCceEEEE
Confidence 4555545556788899888888775 455 557889888765 5556666555666664443
No 312
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=78.55 E-value=13 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 47 GLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 47 g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
+.+.+...|+... ..|+++++|+|. .++++.++.+++.+.+++
T Consensus 81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 4678888888876 578999999999 689999999999886554
No 313
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=78.20 E-value=15 Score=35.86 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=58.8
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+ ...+..+++++.+. . .-+++++-....+ .+++....... +.++..+...|.+.++..++....
T Consensus 24 l~v~g-kpli~~~l~~l~~~----g-~~~iivvv~~~~~----~i~~~~~~~~~--i~~v~~~~~~G~~~sv~~~~~~l~ 91 (450)
T PRK14360 24 HPLGG-KSLVERVLDSCEEL----K-PDRRLVIVGHQAE----EVEQSLAHLPG--LEFVEQQPQLGTGHAVQQLLPVLK 91 (450)
T ss_pred CEECC-hhHHHHHHHHHHhC----C-CCeEEEEECCCHH----HHHHHhcccCC--eEEEEeCCcCCcHHHHHHHHHHhh
Confidence 34433 35666666665441 1 2255555443222 22333222222 334444445677888888887653
Q ss_pred --CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceE
Q psy3650 286 --GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVV 318 (435)
Q Consensus 286 --~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v 318 (435)
.+.++++++|. .+.++.+.++++..++.+.++.
T Consensus 92 ~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~ 127 (450)
T PRK14360 92 GFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVT 127 (450)
T ss_pred ccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence 45678899998 4788899999988766555543
No 314
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=78.04 E-value=85 Score=32.03 Aligned_cols=161 Identities=10% Similarity=0.017 Sum_probs=85.1
Q ss_pred eEEEEEeCCCCcc-hHHHHHHHHHHhCCceEEEecCCCCCC----HH-HHHHHHHhhccCCEEEEEeCCCCCCCccHHHH
Q psy3650 233 YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLG----LG-TAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 306 (435)
Q Consensus 233 ~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~~~~~~~n~g----~~-~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~ 306 (435)
+.+.++-.-+.+. ..+.+++-.+.+.. ++..+....+. |. ..+..+....+.+|++-.|+|..+..+.|.+.
T Consensus 419 v~~rFvVG~s~n~~l~~~L~~Ea~~ygD--IIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 419 VAVRFFVGLHKNQMVNEELWNEARTYGD--IQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHcCC--eEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 4555555444443 34556666666665 33333333332 11 23334444457799999999999887666665
Q ss_pred HHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcc---cCccc-
Q psy3650 307 IKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGY- 382 (435)
Q Consensus 307 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~- 382 (435)
+.... ..-.+..|....... . .|.-.++++-.........-...++|+..++++++.+.+.... ....|
T Consensus 497 L~~~~-~~~~Ly~G~v~~~~~-P-----iRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~ 569 (636)
T PLN03133 497 LKRTN-VSHGLLYGLINSDSQ-P-----HRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFK 569 (636)
T ss_pred HHhcC-CCCceEEEEeccCCC-c-----ccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCC
Confidence 54332 233566675543211 1 1111111110001112223345678888999999999984211 12222
Q ss_pred chhhHHHHHHH---HCCCcEEEe
Q psy3650 383 VFQMEMVIRAR---QYNYTIGEV 402 (435)
Q Consensus 383 ~~D~el~lr~~---~~G~~i~~~ 402 (435)
.+|+-+...+. +.|.++.+.
T Consensus 570 lEDVyvGi~l~~l~k~gl~v~~~ 592 (636)
T PLN03133 570 LEDVAMGIWIAEMKKEGLEVKYE 592 (636)
T ss_pred hhhHhHHHHHHHhcccCCCceee
Confidence 37888877754 356666544
No 315
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=77.98 E-value=24 Score=33.27 Aligned_cols=139 Identities=12% Similarity=0.163 Sum_probs=78.4
Q ss_pred CceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhh
Q psy3650 34 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL 113 (435)
Q Consensus 34 ~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~ 113 (435)
..+|.+.......|.++++-.+.....++-++.+.+|...+-+ +..+++...+......+...........+--....-
T Consensus 72 ~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~~ 150 (358)
T COG1208 72 GVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDDG 150 (358)
T ss_pred CCceEEEecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhccCccEEEEEecCCCCcCceEEecCC
Confidence 3577777777789999999999999998889999999988888 999998886654433332221211111100000000
Q ss_pred hhchHHHHHHHH-hCCCccccccceehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEe
Q psy3650 114 VSRGANYLTQLL-LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGE 176 (435)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~ 176 (435)
.........+.. .........+|..+++.++++-+ .....+.+..+++-.+.+.|..+..
T Consensus 151 ~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i---~~~~~~~~~~~~~~~l~~~~~~v~~ 211 (358)
T COG1208 151 DGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYI---EKGERFDFEEELLPALAAKGEDVYG 211 (358)
T ss_pred CceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhc---ccCCcccchhhHHHHHHhCCCcEEE
Confidence 000000000000 01111233467789999999833 2233333344677677676763433
No 316
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=77.96 E-value=20 Score=30.51 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=28.6
Q ss_pred ccCCEEEEEcCCC-CCCCC-cHHHHHHHHhcCCCcEEEEeeeec
Q psy3650 59 ATGNFIIIMDADL-SHHPK-FIPEMIKLQQQENLDVVTGTRYVG 100 (435)
Q Consensus 59 a~gd~i~~lD~D~-~~~~~-~l~~~~~~~~~~~~~~v~g~~~~~ 100 (435)
-..|||+|+|+|. ++.|+ .++..+ +++.|++.-.|...
T Consensus 40 ~~~~~vlflDaDigVvNp~~~iEefi----d~~~Di~fydR~~n 79 (222)
T PF03314_consen 40 PEYDWVLFLDADIGVVNPNRRIEEFI----DEGYDIIFYDRFFN 79 (222)
T ss_pred ccCCEEEEEcCCceeecCcccHHHhc----CCCCcEEEEecccc
Confidence 3468999999999 66665 555555 68999998887554
No 317
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=77.87 E-value=1.6 Score=44.21 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=48.6
Q ss_pred eEEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhcCC----CceEEeeeEEC
Q psy3650 261 KIVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQEN----LDVVTGTRYVG 325 (435)
Q Consensus 261 ~i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~----~~~v~~~~~~~ 325 (435)
.++++.++++.| |+.|+|..++-+ ++.||+-+|+|.. -+|+.+.+.+-.+.+++ ...|.-+....
T Consensus 167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~ 245 (720)
T PF03552_consen 167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFD 245 (720)
T ss_pred eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeC
Confidence 577777777666 678888887654 7899999999995 77889998888876655 55566555444
No 318
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=77.86 E-value=29 Score=31.71 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=41.3
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
..+.+...++..|.++|+..|.....+ ++++ +-+|+.+....+..+++...+.+.++++.
T Consensus 76 ~~i~y~~q~~~~Gta~Al~~a~~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~~~~~tv~ 136 (292)
T PRK15480 76 LNLQYKVQPSPDGLAQAFIIGEEFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNKESGATVF 136 (292)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhCCCCEEE-EECCeeeeccCHHHHHHHHHhCCCCeEEE
Confidence 345555566678999999999888754 5555 45777766667888888765555555443
No 319
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=77.76 E-value=24 Score=29.59 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNF 288 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~ 288 (435)
+....+..+++.+... . .-+|+++-+...+.+...+++ .. .. +. .....|....+..|++.. ..+.
T Consensus 25 ~GkplI~~vi~~l~~~----~-i~~I~Vv~~~~~~~~~~~l~~---~~---~~-~~-~~~g~G~~~~l~~al~~~~~~~~ 91 (183)
T TIGR00454 25 CGRCLIDHVLSPLLKS----K-VNNIIIATSPHTPKTEEYINS---AY---KD-YK-NASGKGYIEDLNECIGELYFSEP 91 (183)
T ss_pred CCEEHHHHHHHHHHhC----C-CCEEEEEeCCCHHHHHHHHhh---cC---cE-EE-ecCCCCHHHHHHHHhhcccCCCC
Confidence 3456667777666431 1 225666654434444443332 11 11 22 245668888999999853 3678
Q ss_pred EEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650 289 IIIMDADLS-HHPKFIPEMIKLQQQEN 314 (435)
Q Consensus 289 v~~~d~D~~-~~~~~l~~~~~~~~~~~ 314 (435)
++++-+|.. +.++.+..+++.+...+
T Consensus 92 ~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 92 FLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred EEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 999999996 89999999999875433
No 320
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=77.62 E-value=34 Score=29.46 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=53.9
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC---CceEEEecCCCCCCHHHHHHHHH
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG---SEKIVLKPRKKKLGLGTAYMHGL 281 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~i~~~~~~~n~g~~~a~n~g~ 281 (435)
.+|+-|. ..+...++.+.+. .--+|+++-+...+...+.+++...... ...+.++..++..|.+.++....
T Consensus 25 llpi~g~-piI~~~l~~l~~~-----Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~ 98 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALN-----GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLD 98 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHC-----CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHh
Confidence 4566665 5777777776542 1237777765433333333332111000 12455555555566666654432
Q ss_pred hhc-cCCEEEEEeCCCCCCCccHHHHHHHHhc
Q psy3650 282 KYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQ 312 (435)
Q Consensus 282 ~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~ 312 (435)
... -.+.++++.+|...+. .+..+++...+
T Consensus 99 ~~~~~~~~flv~~gD~i~~~-dl~~~l~~h~~ 129 (217)
T cd04197 99 AKGLIRGDFILVSGDVVSNI-DLKEILEEHKE 129 (217)
T ss_pred hccccCCCEEEEeCCeeecc-CHHHHHHHHHH
Confidence 211 1344668999987754 47788886654
No 321
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=77.53 E-value=23 Score=30.46 Aligned_cols=52 Identities=17% Similarity=0.177 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHhhcc-----CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 46 LGLGTAYMHGLKYAT-----GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~-----gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
.|...+...|++... .|+++++++|. .++++.+..+++.+.+.+.+.++...
T Consensus 78 ~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 78 ASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 366777777887653 38999999999 67889999999998766777776654
No 322
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=77.29 E-value=6.9 Score=34.50 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=43.4
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccCCE----EEEEcCCCCCCCCcHHHHHHHHhcCCC
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATGNF----IIIMDADLSHHPKFIPEMIKLQQQENL 90 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~----i~~lD~D~~~~~~~l~~~~~~~~~~~~ 90 (435)
..+.++..+...|.++|+..+......+- ++++.+|...+. .+..+++...+.+.
T Consensus 73 ~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 73 VKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp EEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred ccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 34666666777799999999999988765 999999997777 77888877766555
No 323
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=77.08 E-value=14 Score=36.16 Aligned_cols=173 Identities=13% Similarity=0.159 Sum_probs=89.0
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc---CC
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GN 287 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~---~d 287 (435)
....++.+++.+.+. ..-++++|-.... +.+++.... ..+.++.++...|.+.++..+++... .+
T Consensus 32 gkpli~~~l~~l~~~-----~~~~iivv~~~~~----~~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d 99 (456)
T PRK14356 32 GEPMLRFVYRALRPL-----FGDNVWTVVGHRA----DMVRAAFPD---EDARFVLQEQQLGTGHALQCAWPSLTAAGLD 99 (456)
T ss_pred CCcHHHHHHHHHHhc-----CCCcEEEEECCCH----HHHHHhccc---cCceEEEcCCCCCcHHHHHHHHHHHhhcCCC
Confidence 455666777666442 1125666543322 222332211 12333334555677888888877653 58
Q ss_pred EEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---------CCccc
Q psy3650 288 FIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---------PGVSD 357 (435)
Q Consensus 288 ~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 357 (435)
+++++++|. .++++.+..+++... +.++++......+...+ ..... .. ..+....-. .....
T Consensus 100 ~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~--g~v~~--~~--g~V~~~~ek~~~~~~~~~~~~~~ 171 (456)
T PRK14356 100 RVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAY--GRVVR--RN--GHVAAIVEAKDYDEALHGPETGE 171 (456)
T ss_pred cEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCc--eEEEE--cC--CeEEEEEECCCCChHHhhhhcCe
Confidence 999999999 588899999998764 33443332222211110 00000 00 000000000 00112
Q ss_pred cccceeeecHHHHHHhhhcc----cCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650 358 LTGSFRLYKKQVLENLVSSC----VSKGYVFQMEMVIRARQYNYTIGEVPI 404 (435)
Q Consensus 358 ~~~~~~~~~r~~~~~~~~~~----~~~~~~~D~el~lr~~~~G~~i~~~p~ 404 (435)
...|...|+++.++++.... ....+ +-.++.-.+.+.|+++..++.
T Consensus 172 ~~~GiY~f~~~~l~~ll~~l~~~~~~~e~-~ltd~i~~~~~~g~~v~~~~~ 221 (456)
T PRK14356 172 VNAGIYYLRLDAVESLLPRLTNANKSGEY-YITDLVGLAVAEGMNVLGVNC 221 (456)
T ss_pred EEEEEEEEEHHHHHHHHHhccCcccCCcE-EHHHHHHHHHHCCCeEEEEEc
Confidence 34567789999887663211 11122 235677777788988877764
No 324
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=77.01 E-value=11 Score=31.60 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 43 KKKLGLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 43 ~~n~g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
....|.......|++.. ..+.++++-+|. .+.++.+..+++.+...+
T Consensus 70 ~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred cCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 56678888999999853 367899999999 579999999999875533
No 325
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=76.96 E-value=25 Score=30.55 Aligned_cols=51 Identities=10% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCceEEEccCCCCCCHHHHHHHHHhhcc-CCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 33 GSEKIVLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 33 ~~~~i~~~~~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
++..+.+. .+...|.+.++..|..... .+.++++.+|...+.+....+...
T Consensus 70 ~~~~i~~~-~~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~ 121 (231)
T cd04183 70 PNATVVEL-DGETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAF 121 (231)
T ss_pred CCCEEEEe-CCCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHh
Confidence 34455544 3457789999999988875 477888999998887755544433
No 326
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=76.90 E-value=11 Score=33.32 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=49.6
Q ss_pred eEEEEeccC-CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HH-----
Q psy3650 202 YTVLLPTYN-EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LG----- 274 (435)
Q Consensus 202 isivip~~n-~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~----- 274 (435)
|..+|.+|+ ..+.+++++..+ .. ..+.=+|-||-.+++...+.++++....+++.++--...-..| .+
T Consensus 1 iAylil~h~~~~~~~~~l~~~l----~~-~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLL----YH-PDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-------TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHh----cC-CCCEEEEEEcCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHH
Confidence 456788866 554444444433 32 2345557788777777777777776777764332211122233 22
Q ss_pred -HHHHHHHhh-ccCCEEEEEeCCCC--CCCccHHHHHHH
Q psy3650 275 -TAYMHGLKY-ATGNFIIIMDADLS--HHPKFIPEMIKL 309 (435)
Q Consensus 275 -~a~n~g~~~-a~~d~v~~~d~D~~--~~~~~l~~~~~~ 309 (435)
..+..+++. ..-+|++++.+++. .+.+.|.+.+..
T Consensus 76 l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~ 114 (244)
T PF02485_consen 76 LNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLES 114 (244)
T ss_dssp HHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHh
Confidence 334444442 35599999998875 444444444443
No 327
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=76.88 E-value=20 Score=35.10 Aligned_cols=98 Identities=11% Similarity=0.189 Sum_probs=58.9
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+. ..+..+++++.+. . --+++++-....+ .++++... .+.++..+...|.+.++..+++...
T Consensus 25 l~i~Gk-pli~~~l~~l~~~----g-i~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~a~~~l~ 90 (458)
T PRK14354 25 HKVCGK-PMVEHVVDSVKKA----G-IDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQAEEFLA 90 (458)
T ss_pred CEeCCc-cHHHHHHHHHHhC----C-CCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHHHHHHhc
Confidence 355443 6677777766541 1 1255555332211 22332221 1222234456688888888888754
Q ss_pred --CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCce
Q psy3650 286 --GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDV 317 (435)
Q Consensus 286 --~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~ 317 (435)
.+.++++++|. .+.++.+.++++..++.+.+.
T Consensus 91 ~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~ 125 (458)
T PRK14354 91 DKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAA 125 (458)
T ss_pred ccCCeEEEEECCccccCHHHHHHHHHHHHhcCCce
Confidence 47899999998 588899999999876555554
No 328
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=76.41 E-value=12 Score=32.79 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=35.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
..+.+.+.....|.+ ..-.++.....|+++++++|. .+.++.+..+++...+.+
T Consensus 64 ~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 64 GKVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CeEEecCccCCCccH-HHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 345443333333444 344455555568999999999 678999999999885544
No 329
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=76.39 E-value=9.4 Score=33.25 Aligned_cols=70 Identities=11% Similarity=0.271 Sum_probs=42.2
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI 82 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~ 82 (435)
-+|+||-... . +.++++....+...+++.+..+..|.+.++..|+.+. .+.++++.+|..+.++.++.+.
T Consensus 45 ~~i~vv~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 45 DDIVIVTGYK---K-EQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred ceEEEEeccC---H-HHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 3666664321 2 2333333222333444333223578889999998887 6788999999988876555554
No 330
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=76.12 E-value=2.6 Score=38.27 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=50.3
Q ss_pred CCeEEEEEeCCCCcChHHHHHHHHHH-hCCceEE-Ec--cCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650 6 YPYEIIVIDDGSPDGTLDAAKQLQSI-YGSEKIV-LK--PRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 6 ~~~EiivvDd~S~d~t~~i~~~~~~~-~~~~~i~-~~--~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~ 81 (435)
.++.+|||-|+.-....++-+-|.-+ +.+..+. ++ +..-.+.-.+.+|-|.-.++-+|++++|+|+.+..+..-..
T Consensus 33 ~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~ 112 (348)
T PF03214_consen 33 SPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTH 112 (348)
T ss_pred cceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccccchhhhHhhhcccceEEEEccccccccCCccce
Confidence 35888999888754443333322100 0000000 00 00111224567999999999999999999998888877777
Q ss_pred HHHHhcCC
Q psy3650 82 IKLQQQEN 89 (435)
Q Consensus 82 ~~~~~~~~ 89 (435)
++.+.++.
T Consensus 113 ~~~v~qh~ 120 (348)
T PF03214_consen 113 IDAVAQHV 120 (348)
T ss_pred ehhhhccc
Confidence 77775543
No 331
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=75.77 E-value=52 Score=28.46 Aligned_cols=142 Identities=13% Similarity=0.083 Sum_probs=75.8
Q ss_pred eEEEecCCCCCCHHHHHHHHHhhc--cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCce-e------
Q psy3650 261 KIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-Y------ 330 (435)
Q Consensus 261 ~i~~~~~~~n~g~~~a~n~g~~~a--~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-~------ 330 (435)
.++.-....+.|.-.-....-+.. ..++|+=+-+|.- ++|..|.++++.+++.++++++......+..- .
T Consensus 65 ~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VK 144 (247)
T COG1212 65 EAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVK 144 (247)
T ss_pred EEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEE
Confidence 455544444445443333333332 4478888888985 99999999999999888899887654433210 0
Q ss_pred ---ccchhHHHHHHHHHHHHHHhcC-CCccccccceeeecHHHHHHhhhcccCcccchhhHHH--HHHHHCCCcEEEeee
Q psy3650 331 ---GWDFKRKLVSRGANYLTQLLLR-PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV--IRARQYNYTIGEVPI 404 (435)
Q Consensus 331 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~--lr~~~~G~~i~~~p~ 404 (435)
...-+...+++..-.+.+-..+ .++.. +=|...||++++++..... ....|+.|-+ ||+.++|.||...-.
T Consensus 145 vV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~-HIGIYayr~~~L~~f~~~~--ps~LE~~E~LEQLR~Le~G~kI~v~i~ 221 (247)
T COG1212 145 VVLDKEGYALYFSRAPIPYGRDNFGGTPFLR-HIGIYAYRAGFLERFVALK--PSPLEKIESLEQLRVLENGEKIHVEIV 221 (247)
T ss_pred EEEcCCCcEEEEEcCCCCCcccccCCcchhh-eeehHHhHHHHHHHHHhcC--CchhHHHHHHHHHHHHHcCCeeEEEEe
Confidence 0000000001000000000000 11111 2234689999999985422 3333444443 678999999976544
Q ss_pred E
Q psy3650 405 S 405 (435)
Q Consensus 405 ~ 405 (435)
.
T Consensus 222 ~ 222 (247)
T COG1212 222 K 222 (247)
T ss_pred c
Confidence 3
No 332
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=75.74 E-value=7.6 Score=32.90 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=43.2
Q ss_pred CCCCC-CHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 42 RKKKL-GLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 42 ~~~n~-g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..... |.-++.-+|+.++.++|++++=+|+ .++++.++.+.+...+.+..++.
T Consensus 67 D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~~ 121 (192)
T COG0746 67 DELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIVP 121 (192)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEEE
Confidence 44444 8889999999999999999999999 77888999999988665644443
No 333
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=75.54 E-value=14 Score=35.01 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcC
Q psy3650 46 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQE 88 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~ 88 (435)
.+...+...|++....|++++.|+|- .++++.++.+++.+.+.
T Consensus 81 ~~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 81 ATRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred chHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcC
Confidence 34667788888887779999999997 67889999999988543
No 334
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=75.26 E-value=78 Score=30.20 Aligned_cols=161 Identities=11% Similarity=-0.028 Sum_probs=87.8
Q ss_pred CCeEEEEEeCCCC--c-chHHHHHHHHHHhCCceEEEecCCCCCC----HH-HHHHHHHhhccCCEEEEEeCCCCCCCcc
Q psy3650 231 YPYEIIVIDDGSP--D-GTLDAAKQLQSIYGSEKIVLKPRKKKLG----LG-TAYMHGLKYATGNFIIIMDADLSHHPKF 302 (435)
Q Consensus 231 ~~~eiivvdd~s~--d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g----~~-~a~n~g~~~a~~d~v~~~d~D~~~~~~~ 302 (435)
..+.+.+|-.-|. + ...+.+++-...+.. ++..+..+++. |. ..+..+......+|++-.|+|..+..+.
T Consensus 176 ~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygD--IL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~ 253 (408)
T PLN03193 176 KGIIIRFVIGHSATSGGILDRAIEAEDRKHGD--FLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIAT 253 (408)
T ss_pred CcEEEEEEeecCCCcchHHHHHHHHHHHHhCC--EEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHH
Confidence 3467777776664 2 233445566666665 33433333432 22 4555566666889999999999999777
Q ss_pred HHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcc-cCcc
Q psy3650 303 IPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC-VSKG 381 (435)
Q Consensus 303 l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~ 381 (435)
|...+.... .+..+.+|...... ...+.-.++... ..+........-+..++|+..++++++...+.... ....
T Consensus 254 L~~~L~~~~-~~~rlYiG~m~~gP---vr~~~~~ky~ep-e~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~ 328 (408)
T PLN03193 254 LGETLVRHR-KKPRVYIGCMKSGP---VLSQKGVRYHEP-EYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHK 328 (408)
T ss_pred HHHHHHhcC-CCCCEEEEecccCc---cccCCCCcCcCc-ccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcc
Confidence 766665432 22247777653211 000000000000 00000001123345678888999999999985222 2233
Q ss_pred c-chhhHHHHHHHHCCCc
Q psy3650 382 Y-VFQMEMVIRARQYNYT 398 (435)
Q Consensus 382 ~-~~D~el~lr~~~~G~~ 398 (435)
| .||+-+...+...+.+
T Consensus 329 y~~EDV~vG~Wl~~L~V~ 346 (408)
T PLN03193 329 YANEDVSLGSWFIGLDVE 346 (408)
T ss_pred cCcchhhhhhHhccCCce
Confidence 3 4899998888544433
No 335
>KOG1022|consensus
Probab=75.04 E-value=4.9 Score=38.81 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=70.3
Q ss_pred CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC-eEEEEEeCCCCcc-hHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLGLG 274 (435)
Q Consensus 197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~-~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~~~~~~~n~g~~ 274 (435)
......+.++-+|++-+.|...++...+ .+. -+|+||=|.-..+ -.+.++.. -.+.+++..+.+| +-
T Consensus 440 ~~~qgFTlim~TYdR~d~L~k~v~~ys~-----vPsL~kIlVVWNnq~k~PP~es~~~~----~~VPlr~r~qkeN--sL 508 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRVDLLKKLVKHYSR-----VPSLKKILVVWNNQGKNPPPESLEPD----IAVPLRFRQQKEN--SL 508 (691)
T ss_pred CcccceeeeeehHHHHHHHHHHHHHHhh-----CCCcceEEEEecCCCCCCChhhcccc----CCccEEEEehhhh--hh
Confidence 3455799999999977766665554433 222 2666665532111 11112221 1134444334333 34
Q ss_pred HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
.++-.-....+++-|+-+|+|++++-+.|.--.+-+++.+..+|.-
T Consensus 509 nNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF 554 (691)
T KOG1022|consen 509 NNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGF 554 (691)
T ss_pred hcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceecc
Confidence 4555556667899999999999999999999999998777666653
No 336
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=74.48 E-value=21 Score=34.96 Aligned_cols=59 Identities=14% Similarity=0.203 Sum_probs=44.4
Q ss_pred EEEccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 37 IVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 37 i~~~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
+.+....+..|.+.++..|+.... .|+++++++|. .+++..+..+++...+.+.++.+.
T Consensus 70 i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~ 131 (459)
T PRK14355 70 VSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVL 131 (459)
T ss_pred eEEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEE
Confidence 444334566788899998888765 47999999998 678889999998876666665443
No 337
>PLN02436 cellulose synthase A
Probab=74.00 E-value=2.6 Score=44.51 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=46.8
Q ss_pred eEEEccCCCC-----CCHHHHHHHHHhhc----cCCEEEEEcCCC-CCCCCcHHHHHHHHhcC----CCcEEEEeeeec
Q psy3650 36 KIVLKPRKKK-----LGLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQE----NLDVVTGTRYVG 100 (435)
Q Consensus 36 ~i~~~~~~~n-----~g~~~a~n~gl~~a----~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~----~~~~v~g~~~~~ 100 (435)
+++|+..+.+ .-|++|+|..++.+ .+.||+-+|+|. +-+|..+.+.+=.+.++ +..+|..++...
T Consensus 533 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~ 611 (1094)
T PLN02436 533 RLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFD 611 (1094)
T ss_pred eEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccC
Confidence 5666644443 35899999999764 489999999999 77888888887777553 345566665444
No 338
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=73.60 E-value=49 Score=27.95 Aligned_cols=88 Identities=10% Similarity=0.172 Sum_probs=52.1
Q ss_pred HHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc--cC-CEEEEEeCCCCCC
Q psy3650 223 TKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NFIIIMDADLSHH 299 (435)
Q Consensus 223 ~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~-d~v~~~d~D~~~~ 299 (435)
.+++.....++|++=..||......+....+............-.++..|-...+-.+++.+ ++ ++++++-+|..+.
T Consensus 20 ~~~~~~~~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~ 99 (200)
T PF01755_consen 20 QQQLAKLGINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFD 99 (200)
T ss_pred HHHHHHcCCceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHHHHcCCCeEEEEecccccc
Confidence 33333345678999888888766533333332211111111111344667778888887765 44 9999999999999
Q ss_pred CccHHHHHHHH
Q psy3650 300 PKFIPEMIKLQ 310 (435)
Q Consensus 300 ~~~l~~~~~~~ 310 (435)
++....+-...
T Consensus 100 ~~f~~~l~~~~ 110 (200)
T PF01755_consen 100 PDFKEFLEEIL 110 (200)
T ss_pred ccHHHHHHHHH
Confidence 88554444333
No 339
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=73.45 E-value=40 Score=30.84 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=41.8
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCC-------CcHHHHHHHHhcCCCcEEEEe
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHP-------KFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~-------~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.++.+..+++..|.++|.-.+...... ++++++ +|...++ -.+..+++...+.+..++...
T Consensus 97 ~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~ 165 (297)
T TIGR01105 97 VTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFNETGRSQVLAK 165 (297)
T ss_pred ceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEE-CCeeccccccccchhHHHHHHHHHHHhCCcEEEEE
Confidence 356666667778999999999888754 555554 8877664 277888886654555554443
No 340
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=73.41 E-value=18 Score=33.50 Aligned_cols=42 Identities=10% Similarity=0.253 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh
Q psy3650 270 KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~ 311 (435)
-+-....+|.|+..|+++|++++|.|..++++.-+.+.+...
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~ 153 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFAR 153 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhh
Confidence 344678999999999999999999999999998888777654
No 341
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=73.13 E-value=41 Score=29.94 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650 271 LGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQEN 314 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~ 314 (435)
.+....+..|++... .++|++.|++-- ++++.+.++++.....+
T Consensus 101 ~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~g 147 (252)
T PLN02728 101 KERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHG 147 (252)
T ss_pred CchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCC
Confidence 345677888888753 578888888764 89999999999886543
No 342
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=72.86 E-value=26 Score=31.11 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 44 KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
+..|.++++..+......+.++++++|... ...+..+++...+.++++.+
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~-~~dl~~~~~~h~~~~~d~tl 150 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVA-DIDIKALIAFHRKHGKKATV 150 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEe-cCCHHHHHHHHHHcCCCEEE
Confidence 446788888888887766777899999865 45577777766666777654
No 343
>KOG4179|consensus
Probab=72.72 E-value=7.5 Score=36.34 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=56.0
Q ss_pred CCCCCCC---eEEEEEeCCCCcChHHHHHHHHHHhCCc--eEEEccCCCC------CC-----------HHHHHHHHHhh
Q psy3650 1 MDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSE--KIVLKPRKKK------LG-----------LGTAYMHGLKY 58 (435)
Q Consensus 1 l~~~~~~---~EiivvDd~S~d~t~~i~~~~~~~~~~~--~i~~~~~~~n------~g-----------~~~a~n~gl~~ 58 (435)
|++++|| .-|.+--|.+.|++.++.+++-+...+. +|.+-+..+. .| .-.....++..
T Consensus 25 le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~pk~W~~sr~q~lm~lKeea~~~ 104 (568)
T KOG4179|consen 25 LEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHGPKHWPDSRFQHLMSLKEEALNW 104 (568)
T ss_pred hhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccCCccCchHHHHHHHHHHHHHHHH
Confidence 4677787 6788888899999999999988764332 3333222111 11 22334567777
Q ss_pred cc---CCEEEEEcCCCCC-CCCcHHHHHHHH
Q psy3650 59 AT---GNFIIIMDADLSH-HPKFIPEMIKLQ 85 (435)
Q Consensus 59 a~---gd~i~~lD~D~~~-~~~~l~~~~~~~ 85 (435)
|+ .||++|.|.|..+ .++.|..++...
T Consensus 105 ~r~~~adyilf~d~d~lLts~dTl~llm~l~ 135 (568)
T KOG4179|consen 105 ARSGWADYILFKDEDNLLTSGDTLPLLMNLI 135 (568)
T ss_pred HHhhhcceeEEeehhheeeCCchHhHHHhcc
Confidence 76 4999999999966 556776666543
No 344
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=72.48 E-value=79 Score=28.98 Aligned_cols=104 Identities=8% Similarity=0.005 Sum_probs=59.5
Q ss_pred eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCC-CCcchHHHHHHHHHHhCC-c--eEEEecCCCCC--CH--
Q psy3650 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDG-SPDGTLDAAKQLQSIYGS-E--KIVLKPRKKKL--GL-- 273 (435)
Q Consensus 202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~-~--~i~~~~~~~n~--g~-- 273 (435)
++||.+-.+ +++++.++.+.+.....++.+.|+.|. ..+...+.++++...+.. + .+..+..+... +.
T Consensus 3 ~~vv~~g~~----~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~ 78 (304)
T cd06430 3 LAVVACGER----LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKK 78 (304)
T ss_pred EEEEEcCCc----HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhh
Confidence 444444444 466777777665555568898888776 667777778888554321 1 23333222111 11
Q ss_pred ----HHHHHHHHhh--ccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 274 ----GTAYMHGLKY--ATGNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 274 ----~~a~n~g~~~--a~~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
+.-.+.-+.. ..-|-++.+|+|..+-.+ |.++.+.+
T Consensus 79 l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~d-I~eL~~~~ 120 (304)
T cd06430 79 LFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRP-VEEIWSFL 120 (304)
T ss_pred cccHHHHHHHHHHHHhhhhceEEEeccceeecCC-HHHHHHHH
Confidence 1111111211 134899999999886644 77777764
No 345
>PLN02917 CMP-KDO synthetase
Probab=72.25 E-value=24 Score=32.19 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcC
Q psy3650 45 KLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQE 88 (435)
Q Consensus 45 n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~ 88 (435)
..|.+.+ ..|++... .|+++++++|. .++++.+..+++.+.++
T Consensus 119 ~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~ 164 (293)
T PLN02917 119 RNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 164 (293)
T ss_pred CCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc
Confidence 3455554 46766554 58999999999 68999999999988544
No 346
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=72.24 E-value=24 Score=31.35 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 45 KLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 45 n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
..|.++++-.+.....+ +.++++++|...+.+. ..+++...+.++++.+
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~~~tl 150 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGKLATV 150 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCCCEEE
Confidence 35578888888888765 8999999998877655 8888766566666643
No 347
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=71.65 E-value=5.7 Score=36.71 Aligned_cols=41 Identities=10% Similarity=0.289 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 47 GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 47 g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
=....||.|+..|+.+|++.+|.|..+.++.-+.+.+.+.+
T Consensus 114 PiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~ 154 (317)
T PF13896_consen 114 PINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARR 154 (317)
T ss_pred ChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhh
Confidence 36788999999999999999999999999988888777644
No 348
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=71.47 E-value=45 Score=25.79 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=48.4
Q ss_pred CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc--cCCEEEEEeCCCC-CCCccHHHHH
Q psy3650 231 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMI 307 (435)
Q Consensus 231 ~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~d~v~~~d~D~~-~~~~~l~~~~ 307 (435)
..+++++.-++..+..... +. .....+.+.. +...+.+.-++.+++.+ ..+-|+++-+|+- ++++.|.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~~~~---Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~ 82 (122)
T PF09837_consen 9 DGADVVLAYTPDGDHAAFR--QL-WLPSGFSFFP---QQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF 82 (122)
T ss_dssp SSSEEEEEE----TTHHHH--HH-HH-TTSEEEE-----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred CCcCEEEEEcCCccHHHHh--cc-ccCCCCEEee---cCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 3567777766665543321 11 1223333332 23446788888888877 4589999999995 9999999999
Q ss_pred HHHhcCCCceEEeee
Q psy3650 308 KLQQQENLDVVTGTR 322 (435)
Q Consensus 308 ~~~~~~~~~~v~~~~ 322 (435)
+.+++ .++|.|+-
T Consensus 83 ~~L~~--~d~VlgPa 95 (122)
T PF09837_consen 83 EALQR--HDVVLGPA 95 (122)
T ss_dssp HHTTT---SEEEEEB
T ss_pred HHhcc--CCEEEeec
Confidence 99965 48888865
No 349
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=71.46 E-value=7.5 Score=34.72 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=64.6
Q ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHH--HHHhCCCcccccc-
Q psy3650 59 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT--QLLLRPGVSDLTG- 135 (435)
Q Consensus 59 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~- 135 (435)
+..|||++.|.|..++...+.++++...+++..+....-..... ...++...+.....+.... ..........+.|
T Consensus 115 ~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~-~~~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct 193 (294)
T PF05212_consen 115 APYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS-EIHHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCT 193 (294)
T ss_pred ccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc-eeeeeEEeecCCceeEeccCCCCCcCCCCCCCCcc
Confidence 35799999999999999999999999877776665433211111 0001111100000000000 0000000111111
Q ss_pred c-----eehhhHHHHHHhh-cc--ccccCchhhHHHHHHHHhhcceeEeeeeEee
Q psy3650 136 S-----FRLYKKQVLENLV-SS--CVSKGYVFQMEMVIRARQYNYTIGEVPISFV 182 (435)
Q Consensus 136 ~-----~~~~~~~~~~~~~-~~--~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~~ 182 (435)
+ .-+|+|++++-+- .. ....+|+.|+.+..-+.....++..+...+.
T Consensus 194 ~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~V 248 (294)
T PF05212_consen 194 GFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYV 248 (294)
T ss_pred eEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEE
Confidence 1 1279999998762 22 3457899998888766444555555544443
No 350
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=70.75 E-value=43 Score=28.86 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=59.2
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-------CCceEEEecCCCCCCHHHHHH
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-------GSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-------~~~~i~~~~~~~n~g~~~a~n 278 (435)
+|+-|. ..+..+++.+.+ .. .-+|+|+-....+...+ .+.+.. ..+.+.........|-+.+..
T Consensus 26 lpv~g~-pli~~~l~~l~~----~g-i~~i~vv~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~ 96 (216)
T cd02507 26 LPVANV-PLIDYTLEWLEK----AG-VEEVFVVCCEHSQAIIE---HLLKSKWSSLSSKMIVDVITSDLCESAGDALRLR 96 (216)
T ss_pred ceECCE-EHHHHHHHHHHH----CC-CCeEEEEeCCcHHHHHH---HHHhcccccccCCceEEEEEccCCCCCccHHHHH
Confidence 455554 566666766644 11 23676665543333333 332221 123344444556788888888
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHH--HhcCCCceEEeeeE
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKL--QQQENLDVVTGTRY 323 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~--~~~~~~~~v~~~~~ 323 (435)
.+.....++ ++++.+|...+.+ +..+++. -...+.++.+....
T Consensus 97 ~~~~~i~~d-flv~~gD~i~~~~-l~~~l~~~r~~~~~~~~~~~~~~ 141 (216)
T cd02507 97 DIRGLIRSD-FLLLSCDLVSNIP-LSELLEERRKKDKNAIATLTVLL 141 (216)
T ss_pred HHhhcCCCC-EEEEeCCEeecCC-HHHHHHHHHhhCcccceEEEEEe
Confidence 888777666 5679999876655 6677753 22334444444333
No 351
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=70.47 E-value=66 Score=27.24 Aligned_cols=38 Identities=8% Similarity=-0.016 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHH
Q psy3650 270 KLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMI 307 (435)
Q Consensus 270 n~g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~ 307 (435)
..|.-.++..++.....++++++=+|.- ++++.+..+.
T Consensus 75 ~~gpl~gi~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 75 LFSPLFGIINAFLTLQTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCCcHHHHHHHHHhcCCCeEEEEecCcCcCCHHHHHHHH
Confidence 4466677778887778899999999995 7888888884
No 352
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=70.39 E-value=18 Score=30.95 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCCcc--hHHHHHHHHHHhCCceEEEecCCC-------CCCH---HHHHHHHHhhcc-------CCEEEE
Q psy3650 231 YPYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKK-------KLGL---GTAYMHGLKYAT-------GNFIII 291 (435)
Q Consensus 231 ~~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~~~~~~~-------n~g~---~~a~n~g~~~a~-------~d~v~~ 291 (435)
+++.-|||+|++... +.++|++. ++..+.+..+. +..+ ...+|.|++..+ .-+|.|
T Consensus 9 ~~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF 83 (207)
T PF03360_consen 9 PPLHWIVVEDSEETTPLVARLLRRS-----GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF 83 (207)
T ss_dssp SSEEEEEEESSSS--HHHHHHHHHH-----TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHc-----CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence 388999999987642 45555543 23344333222 1111 357899998765 256779
Q ss_pred EeCCCCCCCccHHHH
Q psy3650 292 MDADLSHHPKFIPEM 306 (435)
Q Consensus 292 ~d~D~~~~~~~l~~~ 306 (435)
.|+|+.++...+++|
T Consensus 84 aDDdNtYdl~LF~em 98 (207)
T PF03360_consen 84 ADDDNTYDLRLFDEM 98 (207)
T ss_dssp --TTSEE-HHHHHHH
T ss_pred CCCCCeeeHHHHHHH
Confidence 999999998888774
No 353
>KOG3916|consensus
Probab=70.36 E-value=12 Score=34.17 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=73.7
Q ss_pred eEEEccCCCC--CCHHHHHHHHHhhccC----CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCccc
Q psy3650 36 KIVLKPRKKK--LGLGTAYMHGLKYATG----NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF 109 (435)
Q Consensus 36 ~i~~~~~~~n--~g~~~a~n~gl~~a~g----d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 109 (435)
+|.++.+.++ ...+.-+|.|+..|.- |.++|-|-|..+..+. =.+++. +.
T Consensus 185 ~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDr--------------NlY~C~----~~------ 240 (372)
T KOG3916|consen 185 RIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR--------------NLYGCP----EQ------ 240 (372)
T ss_pred eEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCC--------------CccCCC----CC------
Confidence 5666644443 3567778999988863 6788888886443211 111111 00
Q ss_pred chhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhc-cccccCc-hhhHHHHHHHHhhcceeEeeeeE
Q psy3650 110 KRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVS-SCVSKGY-VFQMEMVIRARQYNYTIGEVPIS 180 (435)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~d~~l~~r~~~~g~~~~~~~~~ 180 (435)
. +.+ .....++.+..+.....||-.+++++-+.++.+ ....-+| ++|-|++.|...+|++|..-+..
T Consensus 241 P-RH~---sva~dk~gy~LPY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~ 309 (372)
T KOG3916|consen 241 P-RHM---SVALDKFGYRLPYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPE 309 (372)
T ss_pred C-cch---hhhhhhccccccchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCc
Confidence 0 111 122334445556667778888999999999944 3445556 56899999999999998775544
No 354
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=69.79 E-value=68 Score=27.19 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=52.1
Q ss_pred EEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCC--EEEEEeCCCC-CCCccHHHHHHHH
Q psy3650 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN--FIIIMDADLS-HHPKFIPEMIKLQ 310 (435)
Q Consensus 234 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d--~v~~~d~D~~-~~~~~l~~~~~~~ 310 (435)
++|+|--.- ..+........ ..+++++. .+...|.++.+..|++.+.++ .++++-+|.- +.++.+.+++..+
T Consensus 48 ~vivV~g~~---~~~~~~a~~~~-~~~~~v~n-pd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~ 122 (199)
T COG2068 48 RVIVVTGHR---VAEAVEALLAQ-LGVTVVVN-PDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAF 122 (199)
T ss_pred eEEEEeCcc---hhhHHHhhhcc-CCeEEEeC-cchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 777775443 22223333222 22344333 345678999999999999765 9999999995 9999999999998
Q ss_pred hcC
Q psy3650 311 QQE 313 (435)
Q Consensus 311 ~~~ 313 (435)
...
T Consensus 123 ~~~ 125 (199)
T COG2068 123 RAR 125 (199)
T ss_pred ccc
Confidence 765
No 355
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=69.76 E-value=24 Score=31.49 Aligned_cols=71 Identities=23% Similarity=0.378 Sum_probs=50.4
Q ss_pred HHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCC-EEEEEeCCCCCC-CccHHHHHHHHhcCCCceE
Q psy3650 248 DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN-FIIIMDADLSHH-PKFIPEMIKLQQQENLDVV 318 (435)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d-~v~~~d~D~~~~-~~~l~~~~~~~~~~~~~~v 318 (435)
+.++++++..+..++..+...+..|.|+|+-.|=.....+ |.+++-+|...+ +..+.+|++..++-+..++
T Consensus 85 ~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi 157 (291)
T COG1210 85 ELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVI 157 (291)
T ss_pred HHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEE
Confidence 3444454445567888999999999999999999998776 555555554433 6788889988876454433
No 356
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=69.67 E-value=29 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=41.6
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCC--cHHHHHHHHhcCCCcEE
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVV 93 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~--~l~~~~~~~~~~~~~~v 93 (435)
.+.+.......|.++++..+......+-++++.+|..+... .+..+++...+.+++++
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii 153 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSII 153 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEE
Confidence 34444445567899999888887655667777888876654 78999988766677753
No 357
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=68.86 E-value=45 Score=32.37 Aligned_cols=108 Identities=11% Similarity=0.061 Sum_probs=63.0
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC------CceEEEec-------CCCCC
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG------SEKIVLKP-------RKKKL 271 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~~~i~~~~-------~~~n~ 271 (435)
.+|+-+....|...++.+.+. . --+|+++-.-..+...+.+. +.+. ...+.++. .+...
T Consensus 40 llpv~gkp~lI~~~l~~l~~~----G-i~~i~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~e~~~l 111 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCINS----G-IRRIGVLTQYKAHSLIRHIQ---RGWSFFREELGEFVDLLPAQQRVDEENWYR 111 (425)
T ss_pred eEEECCEEEEhHHHHHHHHHC----C-CCeEEEEecCCHHHHHHHHH---hhhcccccCCCCeEEEeCCcccCCCCcccc
Confidence 455555444677777766542 1 22777776543333333332 2111 11122111 11236
Q ss_pred CHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee
Q psy3650 272 GLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 272 g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
|.+.|+..+..... .+.++++.+|...+ ..+.+|++...+.+.+++.+.
T Consensus 112 GTa~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~~~~tl~~ 163 (425)
T PRK00725 112 GTADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESGADCTVAC 163 (425)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcCCCEEEEE
Confidence 88899988888764 47899999998765 458888887766667666554
No 358
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=68.72 E-value=67 Score=28.30 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=91.3
Q ss_pred CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC--CCCCH---------H-HHHHHH
Q psy3650 213 ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGL---------G-TAYMHG 280 (435)
Q Consensus 213 ~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~--~n~g~---------~-~a~n~g 280 (435)
..+..+..++.+.+......+.++|+.++-++...+.++++.... +..+.+++.+ ..... . ..+-..
T Consensus 11 ~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL~i 89 (246)
T cd00505 11 EYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLY-NFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHL 89 (246)
T ss_pred chhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhcc-CceEEEEeccccCcchhhhhcCccccceeHHHHH
Confidence 344444444444444433478999999998877888888775433 3344443322 11111 1 122222
Q ss_pred Hhhcc-CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccc
Q psy3650 281 LKYAT-GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLT 359 (435)
Q Consensus 281 ~~~a~-~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (435)
.+.-. -+=|+++|+|..+- +.|.++...-.+ +. .+.+..-...... ...++ .............
T Consensus 90 ~~llp~~~kvlYLD~D~iv~-~di~~L~~~~l~-~~-~~aav~d~~~~~~--~~~~~----------~~~~~~~~~~yfN 154 (246)
T cd00505 90 PNLVPDYDKILYVDADILVL-TDIDELWDTPLG-GQ-ELAAAPDPGDRRE--GKYYR----------QKRSHLAGPDYFN 154 (246)
T ss_pred HHHhhccCeEEEEcCCeeec-cCHHHHhhccCC-CC-eEEEccCchhhhc--cchhh----------cccCCCCCCCcee
Confidence 22223 58899999999877 458888764322 22 2222111100000 00000 0011111223456
Q ss_pred cceeeecHHHHHH--hhhc------cc-CcccchhhHHHHH-HHHCCCcEEEeeeEEeecccc
Q psy3650 360 GSFRLYKKQVLEN--LVSS------CV-SKGYVFQMEMVIR-ARQYNYTIGEVPISFVDRVYG 412 (435)
Q Consensus 360 ~~~~~~~r~~~~~--~~~~------~~-~~~~~~D~el~lr-~~~~G~~i~~~p~~~~~~~~~ 412 (435)
+|.+++.-+.+++ +... .. ......|-+++-. +...|.++..+|..+.....+
T Consensus 155 sGVmlinl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~~~~i~~L~~~wN~~~~~ 217 (246)
T cd00505 155 SGVFVVNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQVPFIVKSLPCIWNVRLTG 217 (246)
T ss_pred eeeEEEechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhcCCCeEEECCCeeeEEecC
Confidence 7778887777742 2110 00 1122246676665 445566799999888765443
No 359
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=68.59 E-value=39 Score=32.54 Aligned_cols=108 Identities=11% Similarity=0.149 Sum_probs=61.8
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC--Cc--eEEE-ecCCC------CCCH
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG--SE--KIVL-KPRKK------KLGL 273 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~--~i~~-~~~~~------n~g~ 273 (435)
.+|+-+....|...|+.+.+. .--+|+++-.-..+...+.+. .... .. .... .+.+. ..|.
T Consensus 30 llPv~gk~plI~~~L~~l~~~-----Gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lGt 101 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNS-----GYLRIYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKRWYLGS 101 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHC-----CCCEEEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCCcccCC
Confidence 456555445677777776552 123777776544333333332 1111 11 1111 11111 3688
Q ss_pred HHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee
Q psy3650 274 GTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 274 ~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
+.|+..+..... .++++++.+|...+ ..+.+|++....++.++.+..
T Consensus 102 a~al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~~~~~ti~~ 151 (407)
T PRK00844 102 ADAIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIESGAGVTVAA 151 (407)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhcCCcEEEEE
Confidence 899988888763 26899999998765 457888887666666655443
No 360
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=68.33 E-value=82 Score=27.53 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=56.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc---C
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---G 286 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~---~ 286 (435)
+....++.+++.+.. .+. --+|||+-+...++..+.+-+ ....+ ++.++.. ..........|+.... .
T Consensus 30 ~g~pll~~tl~~f~~---~~~-i~~Ivvv~~~~~~~~~~~~~~-~~~~~--~v~~v~G--G~~R~~SV~~gL~~~~~~~~ 100 (230)
T COG1211 30 GGRPLLEHTLEAFLE---SPA-IDEIVVVVSPEDDPYFEKLPK-LSADK--RVEVVKG--GATRQESVYNGLQALSKYDS 100 (230)
T ss_pred CCEEehHHHHHHHHh---CcC-CCeEEEEEChhhhHHHHHhhh-hccCC--eEEEecC--CccHHHHHHHHHHHhhccCC
Confidence 344556666666544 222 348888876655554443332 12222 4555433 2345677777888776 7
Q ss_pred CEEEEEeCCCC-CCCccHHHHHHHH
Q psy3650 287 NFIIIMDADLS-HHPKFIPEMIKLQ 310 (435)
Q Consensus 287 d~v~~~d~D~~-~~~~~l~~~~~~~ 310 (435)
++|++-|+==- .+++.|.+++...
T Consensus 101 ~~VlvHDaaRPf~~~~~i~~li~~~ 125 (230)
T COG1211 101 DWVLVHDAARPFLTPKLIKRLIELA 125 (230)
T ss_pred CEEEEeccccCCCCHHHHHHHHHhh
Confidence 99999988764 8899999999444
No 361
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=66.07 E-value=75 Score=26.27 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEEE
Q psy3650 213 ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292 (435)
Q Consensus 213 ~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~ 292 (435)
..+-+.++.+.+. .-+|+++-+-++..|++.+.+. .+.++..+ ..|+-.-++.+++.... =++++
T Consensus 28 pLI~~v~~al~~~------~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tp-G~GYv~Dl~~al~~l~~-P~lvv 92 (177)
T COG2266 28 PLIDRVLEALRKI------VDEIIVAISPHTPKTKEYLESV-------GVKVIETP-GEGYVEDLRFALESLGT-PILVV 92 (177)
T ss_pred cHHHHHHHHHHhh------cCcEEEEeCCCCHhHHHHHHhc-------CceEEEcC-CCChHHHHHHHHHhcCC-ceEEE
Confidence 3455556555442 2399999999999998877764 24444443 45899999999999877 56677
Q ss_pred eCCCC-CCCccHHHHHHHHh
Q psy3650 293 DADLS-HHPKFIPEMIKLQQ 311 (435)
Q Consensus 293 d~D~~-~~~~~l~~~~~~~~ 311 (435)
.+|.. +.|..|..+++.+.
T Consensus 93 saDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 93 SADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ecccccCCHHHHHHHHHHHh
Confidence 88875 88999999999886
No 362
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=65.99 E-value=87 Score=27.75 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC--C---C--CCH--HHHHH-HHHh-h-c-cC
Q psy3650 220 YLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--K---K--LGL--GTAYM-HGLK-Y-A-TG 286 (435)
Q Consensus 220 ~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~--~---n--~g~--~~a~n-~g~~-~-a-~~ 286 (435)
.++.+.+.....++.+.|++|+-+++..+.++++...++. .+.++.-. . . ... ..+.. ..+. . . .-
T Consensus 18 v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~-~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~~lLP~~v 96 (248)
T cd06432 18 IMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGF-EYELVTYKWPRWLHKQTEKQRIIWGYKILFLDVLFPLNV 96 (248)
T ss_pred HHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCC-ceEEEEecChhhhhcccccchhHHHHHHHHHHHhhhhcc
Confidence 3334434444467999999999999999999998877643 33322221 0 0 010 01111 1122 1 1 34
Q ss_pred CEEEEEeCCCCCCCccHHHHHHH
Q psy3650 287 NFIIIMDADLSHHPKFIPEMIKL 309 (435)
Q Consensus 287 d~v~~~d~D~~~~~~~l~~~~~~ 309 (435)
+-++.+|+|..+- +.|.++...
T Consensus 97 dkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 97 DKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred CEEEEEcCCceec-ccHHHHHhc
Confidence 8899999999766 568888764
No 363
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=65.79 E-value=9.6 Score=34.06 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=71.9
Q ss_pred ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHH-------HHHHHHhcCCCc-
Q psy3650 284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGA-------NYLTQLLLRPGV- 355 (435)
Q Consensus 284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~- 355 (435)
+..|||++.|.|..++...+.++++-++..+.++..+..-..... ..++...+-..... .....-..+.+.
T Consensus 115 ~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~-~~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct 193 (294)
T PF05212_consen 115 APYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSE-IHHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCT 193 (294)
T ss_pred ccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCce-eeeeEEeecCCceeEeccCCCCCcCCCCCCCCcc
Confidence 467999999999999999999999988876766666544322220 10111000000000 000000001110
Q ss_pred cccccceeeecHHHHHHhhhc---ccCcccchhhHHHHHHHHCCCcEEEeeeEEeec
Q psy3650 356 SDLTGSFRLYKKQVLENLVSS---CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDR 409 (435)
Q Consensus 356 ~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~ 409 (435)
..+-...=+|+|++++-+... .-..+++-|+-+..-+.....+|..+...++-|
T Consensus 194 ~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH 250 (294)
T PF05212_consen 194 GFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVH 250 (294)
T ss_pred eEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEEEE
Confidence 011112347999999988432 234788888888877766778888888766544
No 364
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=65.60 E-value=57 Score=31.94 Aligned_cols=176 Identities=10% Similarity=0.112 Sum_probs=89.9
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 285 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~ 285 (435)
+|..+ ...++.+++.+.+. . .-+++++-.... +.+++.... . ++.++..++..|.+.++..++....
T Consensus 28 ~~i~g-kpli~~~i~~l~~~----g-i~~i~vv~~~~~----~~i~~~~~~-~--~~~~i~~~~~~Gt~~al~~a~~~l~ 94 (456)
T PRK09451 28 HTLAG-KPMVQHVIDAANEL----G-AQHVHLVYGHGG----DLLKQTLAD-E--PLNWVLQAEQLGTGHAMQQAAPFFA 94 (456)
T ss_pred ceeCC-hhHHHHHHHHHHhc----C-CCcEEEEECCCH----HHHHHhhcc-C--CcEEEECCCCCCcHHHHHHHHHhhc
Confidence 34433 44566666665431 1 226666654221 223332221 1 2333334556688898988888753
Q ss_pred -CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------cc
Q psy3650 286 -GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------VS 356 (435)
Q Consensus 286 -~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 356 (435)
.+.++++++|. .+.+..+.++++...+.... +...+ ..+... +... .... ..+.+..-... ..
T Consensus 95 ~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~-i~~~~-~~~~~~--yG~v--~~~~--g~V~~~~EKp~~~~~~~~~~ 166 (456)
T PRK09451 95 DDEDILMLYGDVPLISVETLQRLRDAKPQGGIG-LLTVK-LDNPTG--YGRI--TREN--GKVVGIVEQKDATDEQRQIQ 166 (456)
T ss_pred cCCcEEEEeCCcccCCHHHHHHHHHHhhcCCEE-EEEEE-cCCCCC--ceEE--EecC--CeEEEEEECCCCChHHhhcc
Confidence 57899999998 47778899988765433322 22211 111111 1110 0000 00000000000 11
Q ss_pred ccccceeeecHHHHHHhhhc-cc--CcccchhhHHHHHHHHCCCcEEEe
Q psy3650 357 DLTGSFRLYKKQVLENLVSS-CV--SKGYVFQMEMVIRARQYNYTIGEV 402 (435)
Q Consensus 357 ~~~~~~~~~~r~~~~~~~~~-~~--~~~~~~D~el~lr~~~~G~~i~~~ 402 (435)
....|..+|+++.|.++... .. ..+..+-.|+.-.+.+.|+++...
T Consensus 167 ~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~ 215 (456)
T PRK09451 167 EINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAV 215 (456)
T ss_pred EEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEE
Confidence 34667789999988765321 11 111223458888899999988766
No 365
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=65.42 E-value=30 Score=32.58 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceE
Q psy3650 271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v 318 (435)
.|.+.++..++.... .+.++++.+|...+. .+.++++...+.+.++.
T Consensus 93 ~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~~~~~~t 142 (361)
T TIGR02091 93 QGTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIESGADVT 142 (361)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHHcCCCEE
Confidence 688888888888764 578999999987655 47788887655555443
No 366
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=65.30 E-value=40 Score=32.75 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee
Q psy3650 271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
.|.+.|+..+..... .+.++++++|...+ ..+..+++...+.+.++.++.
T Consensus 98 lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~~a~~tl~~ 150 (429)
T PRK02862 98 QGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRETGADITLAV 150 (429)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHcCCCEEEEE
Confidence 588999998888764 37889999999664 568888887766666655544
No 367
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.68 E-value=22 Score=34.70 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 42 RKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
..+..|.+.+...++.... .|.++++++|. .+++..++.+++..+ .+.++++.
T Consensus 78 ~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~-~~~~~~i~ 133 (446)
T PRK14353 78 QKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLA-DGADVVVL 133 (446)
T ss_pred cCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHh-cCCcEEEE
Confidence 3456687888888877653 57788899998 788999999998664 44555443
No 368
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=64.51 E-value=18 Score=35.27 Aligned_cols=48 Identities=15% Similarity=0.379 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHhhcc-CCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 42 RKKKLGLGTAYMHGLKYAT-GNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
..+..|.+.+...++.... .+.++++++|. .+++..++.+++...+.+
T Consensus 71 ~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~ 120 (451)
T TIGR01173 71 QAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQNG 120 (451)
T ss_pred cCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhCC
Confidence 4445688888888888875 47899999998 678889999998775543
No 369
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=63.66 E-value=51 Score=29.73 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=45.5
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHH-hCCceEEEccCCCCCCHHHHHHHHHhhcc----CCEEEEEcCCCCCCC-CcHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSI-YGSEKIVLKPRKKKLGLGTAYMHGLKYAT----GNFIIIMDADLSHHP-KFIPEM 81 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~-~~~~~i~~~~~~~n~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~-~~l~~~ 81 (435)
-+|+||-+. .-.+.+++...+ .+...++. .+...|.+++...+..... .++++++.+|..+.. ..+..+
T Consensus 50 ~~i~vvt~~---~~~~~v~~~l~~~~~~~~ii~--ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~ 124 (274)
T cd02509 50 DRILVVTNE---EYRFLVREQLPEGLPEENIIL--EPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKA 124 (274)
T ss_pred CcEEEEech---HHHHHHHHHHhhcCCCceEEE--CCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHH
Confidence 366666432 122344443332 23334443 4556677777777766543 579999999987653 344444
Q ss_pred HHHHh---cCCCcEEEEe
Q psy3650 82 IKLQQ---QENLDVVTGT 96 (435)
Q Consensus 82 ~~~~~---~~~~~~v~g~ 96 (435)
++... +.+..+++|.
T Consensus 125 l~~~~~~~~~~~~vt~gi 142 (274)
T cd02509 125 VKKAVEAAEEGYLVTFGI 142 (274)
T ss_pred HHHHHHHHHcCCEEEEEe
Confidence 43221 2455666654
No 370
>PHA01631 hypothetical protein
Probab=63.65 E-value=6 Score=31.88 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=43.1
Q ss_pred CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCC--CCCHHHHHHHHHhh---ccCCEEEEEcCCCCCCCC
Q psy3650 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK--KLGLGTAYMHGLKY---ATGNFIIIMDADLSHHPK 76 (435)
Q Consensus 7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~--n~g~~~a~n~gl~~---a~gd~i~~lD~D~~~~~~ 76 (435)
++..++|||.-+|-|+..+++. .++ -+++..+.+ +...+..+-..++. ...|+++++|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~---~~~-Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY---QEK-IIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc---CCc-eEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 5889999998888776644443 233 233333222 33456666677665 346888999999988874
No 371
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=63.52 E-value=49 Score=31.39 Aligned_cols=86 Identities=9% Similarity=0.104 Sum_probs=55.5
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v 289 (435)
+....+..+++.+... .-+|+|+-+.+.. +. +.. ..+.++. ......|...++..|++.+..+.+
T Consensus 198 ~Gk~ll~~~l~~l~~~------~~~vvV~~~~~~~---~~---~~~--~~v~~i~-d~~~~~Gpl~gi~~al~~~~~~~~ 262 (369)
T PRK14490 198 HESNQLVHTAALLRPH------CQEVFISCRAEQA---EQ---YRS--FGIPLIT-DSYLDIGPLGGLLSAQRHHPDAAW 262 (369)
T ss_pred CCccHHHHHHHHHHhh------CCEEEEEeCCchh---hH---Hhh--cCCcEEe-CCCCCCCcHHHHHHHHHhCCCCcE
Confidence 5666777777776542 1267666543311 11 111 2334332 222346777889999988888899
Q ss_pred EEEeCCCC-CCCccHHHHHHHH
Q psy3650 290 IIMDADLS-HHPKFIPEMIKLQ 310 (435)
Q Consensus 290 ~~~d~D~~-~~~~~l~~~~~~~ 310 (435)
+++=+|.- ++++.+..++...
T Consensus 263 lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 263 LVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred EEEeCCcCCCCHHHHHHHHHhc
Confidence 99999986 8999999998875
No 372
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=63.50 E-value=42 Score=28.82 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=38.1
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.+.++......|.++++..+.. ...+.++++.+|... ...+..+++...+.+.++++..
T Consensus 71 ~i~~~~~~~~~g~~~~l~~~~~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~~~~~~~ 129 (220)
T cd06426 71 NISYVREDKPLGTAGALSLLPE-KPTDPFLVMNGDILT-NLNYEHLLDFHKENNADATVCV 129 (220)
T ss_pred cEEEEECCCCCcchHHHHHHHh-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCCCEEEEE
Confidence 3554444445677777654443 336778888999744 5577888888766666665544
No 373
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=63.33 E-value=27 Score=34.49 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=42.2
Q ss_pred EEEccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 37 IVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 37 i~~~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
+.++..+...|.+.+.-.|+.... .+-++++++|. .+++..+..+++...+.+.++.+.
T Consensus 73 i~~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~ 134 (481)
T PRK14358 73 VAFARQEQQLGTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTIL 134 (481)
T ss_pred cEEecCCCcCCcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEE
Confidence 444445556788888888887753 23366789998 678889999998876666666443
No 374
>PLN02400 cellulose synthase
Probab=62.77 E-value=6.1 Score=42.06 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=45.4
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCCCC-CCCcHHHHHHHHhcC----CCcEEEEeeeec
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADLSH-HPKFIPEMIKLQQQE----NLDVVTGTRYVG 100 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~----~~~~v~g~~~~~ 100 (435)
+++|+..+.+- -|++|+|.-++.+ .+.||+-+|+|... +|..+.+.+=.+.++ +..+|..++...
T Consensus 524 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~ 602 (1085)
T PLN02400 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFD 602 (1085)
T ss_pred eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccC
Confidence 56666444443 4899999999854 48999999999955 788888777666543 344566665443
No 375
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=61.82 E-value=26 Score=29.05 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEE
Q psy3650 44 KKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVV 93 (435)
Q Consensus 44 ~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v 93 (435)
...|...+.-.|++.+ ..+|++++=+|. .++++.+..+++...+.+..++
T Consensus 55 ~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~ 108 (178)
T PRK00576 55 RGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTDAEVV 108 (178)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE
Confidence 3456677777777655 469999999999 6688999999987754444433
No 376
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.86 E-value=20 Score=34.97 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=40.5
Q ss_pred EEEccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEE
Q psy3650 37 IVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVV 93 (435)
Q Consensus 37 i~~~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v 93 (435)
+.++..+...|.+.++..++.... .+.++++++|. .+.+..+..+++...+.+.++.
T Consensus 68 i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~ 127 (450)
T PRK14360 68 LEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVT 127 (450)
T ss_pred eEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence 333334455677788877877653 46678899998 5688899999988866666654
No 377
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=60.79 E-value=33 Score=31.53 Aligned_cols=96 Identities=19% Similarity=0.088 Sum_probs=55.1
Q ss_pred CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHH--H-HHHHhCCceEEEecCCCCCC------HHHHHHHH
Q psy3650 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAK--Q-LQSIYGSEKIVLKPRKKKLG------LGTAYMHG 280 (435)
Q Consensus 210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~--~-~~~~~~~~~i~~~~~~~n~g------~~~a~n~g 280 (435)
.+.....++++++++. .|..|||+.-=...|- +.+. + +..+.|+..++.....+..+ .-.+-..|
T Consensus 17 ~~~~~t~~~l~siR~~----~P~A~IILSTW~~~d~--~~l~~D~vv~s~DPG~~~~~~~~~~~~~~~NiNrQi~St~aG 90 (311)
T PF07507_consen 17 QEPDITKNCLASIRKH----FPGAEIILSTWEGQDI--SGLDYDQVVISDDPGSNVVLYKKDGKPGPNNINRQIVSTLAG 90 (311)
T ss_pred ccchhHHHHHHHHHHh----CCCCEEEEECCCCCCc--ccCCcceEEecCCCCcceeeccCCCCCcccchhHHHHHHHHH
Confidence 3455567788877664 4577888854221221 1111 1 11233554443332222222 11555689
Q ss_pred HhhccCCEEEEEeCCCCCCCccHHHHHHHHh
Q psy3650 281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311 (435)
Q Consensus 281 ~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~ 311 (435)
++.++.+|++=+=+|..+..+.+-++.....
T Consensus 91 L~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~ 121 (311)
T PF07507_consen 91 LKAAKTKYAMKLRTDNRLTGNNFLDLYEKYP 121 (311)
T ss_pred HHHhCCceEEEEcccccccchHHHHHHHHhc
Confidence 9999999999999999876666666666543
No 378
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=60.72 E-value=46 Score=28.66 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=57.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHh
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQ 86 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~ 86 (435)
-+|||. .|.+.+...+++++.... +.+++.++- ..-.-.-.+++.-.++.|+-+-+|+ .++|+.+..++....
T Consensus 45 d~ivvA--TS~~~~d~~l~~~~~~~G---~~vfrGs~~-dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l 118 (241)
T COG1861 45 DKIVVA--TSDKEEDDALEEVCRSHG---FYVFRGSEE-DVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHL 118 (241)
T ss_pred cceEEE--ecCCcchhHHHHHHHHcC---eeEecCCHH-HHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 567776 677778888888887654 444432210 1122233455555689999999999 779999999999888
Q ss_pred cCCCcEEEEe
Q psy3650 87 QENLDVVTGT 96 (435)
Q Consensus 87 ~~~~~~v~g~ 96 (435)
+.++|.+.+.
T Consensus 119 ~~gaDY~s~~ 128 (241)
T COG1861 119 EKGADYVSNT 128 (241)
T ss_pred hcCCcccccc
Confidence 8888877655
No 379
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=59.96 E-value=35 Score=33.30 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHhhcc-CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 42 RKKKLGLGTAYMHGLKYAT-GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
..+..|.+++...++.+.. .++++++++|. .+.+..+..+++...+.++++++..
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~ 125 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILV 125 (448)
T ss_pred cCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 4556788888888888764 58999999998 5678888999988766677765543
No 380
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=59.85 E-value=80 Score=24.50 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=46.5
Q ss_pred HhhcCCCCeEEEEEeCCCCcchHHHHHHHHH-HhCCceEEEecCCCCCCHHHHHHHHHhhc--cC-CEEEEEeCCCCCCC
Q psy3650 225 YMDEGNYPYEIIVIDDGSPDGTLDAAKQLQS-IYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NFIIIMDADLSHHP 300 (435)
Q Consensus 225 ~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~-d~v~~~d~D~~~~~ 300 (435)
.+.....+++++---||.+....+....... ..+... ..-.+...|-..++..+++.+ ++ ++++++.+|..+.+
T Consensus 20 ~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~--~~l~~gEiGC~lSH~~~w~~~~~~~~~~alIlEDDv~~~~ 97 (128)
T cd06532 20 QLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYG--RPLTPGEIGCFLSHYKLWQKIVESNLEYALILEDDAILDP 97 (128)
T ss_pred HHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcC--CCCChhhHHHHHHHHHHHHHHHHcCCCeEEEEccCcEECC
Confidence 3444556889888888888765543332211 000001 111234567777888888765 44 99999999999888
Q ss_pred c
Q psy3650 301 K 301 (435)
Q Consensus 301 ~ 301 (435)
+
T Consensus 98 ~ 98 (128)
T cd06532 98 D 98 (128)
T ss_pred C
Confidence 8
No 381
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=59.60 E-value=49 Score=31.07 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=41.2
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.+.++......|.+.++..++.....+-++++.+|..++ ..+..+++...+.++++++..
T Consensus 73 ~~~~~~~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~~d~ti~~ 132 (353)
T TIGR01208 73 KITYIVQGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKDYDALILL 132 (353)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHhcCCCcEEEE
Confidence 444444455678999999998877554455667998774 667888887766677755443
No 382
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=58.72 E-value=90 Score=30.74 Aligned_cols=109 Identities=13% Similarity=0.015 Sum_probs=53.9
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA- 284 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a- 284 (435)
+|..+....+..+++.+... . .-+++||-+.. -...+++...........++..+...|.+.|+-.+....
T Consensus 27 l~l~g~~~ll~~tl~~l~~~----~-~~~iviv~~~~---~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~ 98 (468)
T TIGR01479 27 LALVGDLTMLQQTLKRLAGL----P-CSSPLVICNEE---HRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAA 98 (468)
T ss_pred eEcCCCCcHHHHHHHHHhcC----C-CcCcEEecCHH---HHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHH
Confidence 34445556677777766442 1 22566654321 112222222222111122333454556666655544433
Q ss_pred ---c-CCEEEEEeCCCCC-CCccHHHHHHHH---hcCCCceEEeee
Q psy3650 285 ---T-GNFIIIMDADLSH-HPKFIPEMIKLQ---QQENLDVVTGTR 322 (435)
Q Consensus 285 ---~-~d~v~~~d~D~~~-~~~~l~~~~~~~---~~~~~~~v~~~~ 322 (435)
. .++++++.+|..+ ++..+.++++.. .+.+..+..|..
T Consensus 99 ~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~ 144 (468)
T TIGR01479 99 RRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV 144 (468)
T ss_pred HHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 2 4689999999765 445677777643 233444444443
No 383
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=58.31 E-value=43 Score=29.91 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=42.2
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCC--cHHHHHHHHhcCCCcEEE
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~--~l~~~~~~~~~~~~~~v~ 94 (435)
.+.++..+...|.++++..+......+-++++.+|..+... .+..+++...+.+.+++.
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~ 154 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIA 154 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEE
Confidence 45454445567999999999988776667788888876654 588998877555555433
No 384
>KOG0384|consensus
Probab=56.82 E-value=72 Score=34.87 Aligned_cols=104 Identities=19% Similarity=0.320 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcch--HHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650 214 NLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGT--LDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291 (435)
Q Consensus 214 ~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~ 291 (435)
.+.++|.-|..++.+-..+++=+ |||.... ++.+..|.+.... .++++-...-.| .||+++.+|-|++
T Consensus 707 QMVRmLDIL~eYL~~r~ypfQRL---DGsvrgelRq~AIDhFnap~Sd-dFvFLLSTRAGG------LGINLatADTVII 776 (1373)
T KOG0384|consen 707 QMVRMLDILAEYLSLRGYPFQRL---DGSVRGELRQQAIDHFNAPDSD-DFVFLLSTRAGG------LGINLATADTVII 776 (1373)
T ss_pred HHHHHHHHHHHHHHHcCCcceec---cCCcchHHHHHHHHhccCCCCC-ceEEEEecccCc------ccccccccceEEE
Confidence 46678887777777655555543 6776533 3444556554443 344333333334 3778889999999
Q ss_pred EeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCc
Q psy3650 292 MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG 328 (435)
Q Consensus 292 ~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~ 328 (435)
+|+| +-|-+.|..|.++-+=+..-.|--+|+...+.
T Consensus 777 FDSD-WNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 777 FDSD-WNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred eCCC-CCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999 66678899999877644555666677665543
No 385
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.72 E-value=37 Score=33.20 Aligned_cols=51 Identities=14% Similarity=0.319 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcE
Q psy3650 42 RKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDV 92 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~ 92 (435)
..+..|.+.++..++.... .|+++++++|. .+++..+..+++..++.+++.
T Consensus 72 ~~~~~g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~ 125 (458)
T PRK14354 72 QEEQLGTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEHKAAA 125 (458)
T ss_pred cCCCCCHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhcCCce
Confidence 4456688888888887754 47999999998 678899999998886555554
No 386
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.05 E-value=39 Score=33.07 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHhhcc---CCEEEEEcCCC-CCCCCcHHHHHHHHh
Q psy3650 42 RKKKLGLGTAYMHGLKYAT---GNFIIIMDADL-SHHPKFIPEMIKLQQ 86 (435)
Q Consensus 42 ~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~-~~~~~~l~~~~~~~~ 86 (435)
.+...|.+.++..+++... .|+++++++|. .++++.++.+++...
T Consensus 76 ~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 76 QEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred cCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 4445677888887776653 58999999999 678889999998764
No 387
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=54.77 E-value=52 Score=31.25 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 46 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
.|.++|+..+..... .|.++++.+|...+. .+..+++...+.++++++.
T Consensus 99 ~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~~~~~tl~ 150 (380)
T PRK05293 99 KGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEKEADVTIA 150 (380)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhcCCCEEEE
Confidence 688888888887654 478999999986654 5666776554556665433
No 388
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=54.44 E-value=80 Score=28.43 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=18.1
Q ss_pred HHhhccCCEEEEEeCCCCCCCccHHHHHH
Q psy3650 280 GLKYATGNFIIIMDADLSHHPKFIPEMIK 308 (435)
Q Consensus 280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~ 308 (435)
|+-.++-+=|+++|+|+.+-.+ .+.+.+
T Consensus 85 A~l~ssFeevllLDaD~vpl~~-p~~lF~ 112 (271)
T PF11051_consen 85 ALLFSSFEEVLLLDADNVPLVD-PEKLFE 112 (271)
T ss_pred hhhhCCcceEEEEcCCcccccC-HHHHhc
Confidence 3334556889999999985444 444443
No 389
>KOG0799|consensus
Probab=53.44 E-value=75 Score=30.94 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=67.0
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HH--HHH
Q psy3650 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LG--TAY 277 (435)
Q Consensus 201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~--~a~ 277 (435)
.+..+..+|...+.++++++++. ...+.=.|.||..|++..+..++++....+++.+....+.-..| .+ .|.
T Consensus 104 ~~a~~~~v~kd~~~verll~aiY-----hPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~ 178 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIY-----HPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAH 178 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHh-----CCcCcceEEECCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHH
Confidence 68888999988888888777662 23466788899999999999999999999986665422222222 21 222
Q ss_pred HHHHh----hc-cCCEEEEEeCCCC--CCCccHHHHHHHH
Q psy3650 278 MHGLK----YA-TGNFIIIMDADLS--HHPKFIPEMIKLQ 310 (435)
Q Consensus 278 n~g~~----~a-~~d~v~~~d~D~~--~~~~~l~~~~~~~ 310 (435)
-..++ .. .-+|++-+-+.+. .+.+.+..+...+
T Consensus 179 l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 179 LNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred HHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 22232 21 1477666655443 4455666666665
No 390
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=53.22 E-value=7.3 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=45.0
Q ss_pred eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCC-CCCCCcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650 36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQE----NLDVVTGTRYVGT 101 (435)
Q Consensus 36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~----~~~~v~g~~~~~~ 101 (435)
.++|+..+.+- -|++|+|.-++.+ .+.||+-+|+|. .-+|..+.+.+=.+.++ +..+|..++...+
T Consensus 455 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~g 534 (1044)
T PLN02915 455 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDG 534 (1044)
T ss_pred eeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCCcccCC
Confidence 46666444433 4899999999876 489999999999 55777777666444432 4555666654443
No 391
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=53.01 E-value=1.1e+02 Score=27.29 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=45.9
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKL 84 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~ 84 (435)
-+|+||-... ..+.+++..+..+ ..+.+. .+..+...+.-.|++... .++|++.|++- .++++.+..+++.
T Consensus 69 ~~IvVV~~~~---~~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~ 142 (252)
T PLN02728 69 KEIVVVCDPS---YRDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKD 142 (252)
T ss_pred CeEEEEeCHH---HHHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHH
Confidence 4677764422 1233333333222 234432 233345677777888754 47888888877 7788899999998
Q ss_pred HhcCC
Q psy3650 85 QQQEN 89 (435)
Q Consensus 85 ~~~~~ 89 (435)
..+.+
T Consensus 143 ~~~~g 147 (252)
T PLN02728 143 AAVHG 147 (252)
T ss_pred HhhCC
Confidence 86655
No 392
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=52.77 E-value=1.5e+02 Score=27.91 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHh
Q psy3650 267 RKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQ 311 (435)
Q Consensus 267 ~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~ 311 (435)
.....|..+++..|++.+..+.++++-+|.- ++++.+..++....
T Consensus 226 ~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 226 RGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred CCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhh
Confidence 3345699999999999887667789999996 88899999998764
No 393
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=52.30 E-value=46 Score=31.47 Aligned_cols=48 Identities=10% Similarity=0.354 Sum_probs=31.0
Q ss_pred CHHHHHHHHHhhc---cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650 272 GLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320 (435)
Q Consensus 272 g~~~a~n~g~~~a---~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~ 320 (435)
|.+.+...+.+.. ..+.++++++|...+.+ +..|++...+.+.++...
T Consensus 97 g~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~d-l~~ll~~h~~~~a~~tl~ 147 (369)
T TIGR02092 97 GGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNID-LKAVLKYHEETGKDITVV 147 (369)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEECCCEEEecC-HHHHHHHHHHcCCCEEEE
Confidence 3444565666554 24789999999866544 777887665556665433
No 394
>PRK10122 GalU regulator GalF; Provisional
Probab=52.04 E-value=87 Score=28.64 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=41.7
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhcc-CCEEEEEcCCCCCCCC-------cHHHHHHHHhcCCCcEEEE
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHPK-------FIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~-------~l~~~~~~~~~~~~~~v~g 95 (435)
.++.+..+++..|.++|+-.+..+-. .++++++ +|..++++ .+..+++...+.+.+++..
T Consensus 97 ~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~ 164 (297)
T PRK10122 97 VTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGRSQVLA 164 (297)
T ss_pred ceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCCcEEEE
Confidence 45666656677899999998888864 4666665 88877653 5788888765566565433
No 395
>KOG0189|consensus
Probab=52.01 E-value=65 Score=27.27 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=64.4
Q ss_pred CCCCCCeEEEEEeCCC-CcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCC-CcHH
Q psy3650 2 DEGNYPYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHP-KFIP 79 (435)
Q Consensus 2 ~~~~~~~EiivvDd~S-~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~-~~l~ 79 (435)
..++.|++++.+|-+- ...|.....+..+++++++|++.. ..++-+.++-..+|-+-++-|++...+- --++
T Consensus 66 ~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~------pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~ 139 (261)
T KOG0189|consen 66 SKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYF------PDAVEVEALFASKGGFSLWEDDHQEYDRLRKVE 139 (261)
T ss_pred HHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEc------chhHHHHHHHHhccchhheecCchhhhhhhhcc
Confidence 3467789999999776 677999999999999999999874 3456678888888877777777764433 2345
Q ss_pred HHHHHHhcCCCcEEE-EeeeecC
Q psy3650 80 EMIKLQQQENLDVVT-GTRYVGT 101 (435)
Q Consensus 80 ~~~~~~~~~~~~~v~-g~~~~~~ 101 (435)
.+-.++..-+.-.++ |.|...+
T Consensus 140 P~~RA~k~L~v~A~~TGrRksQ~ 162 (261)
T KOG0189|consen 140 PARRAYKGLNVKAVFTGRRKSQG 162 (261)
T ss_pred HHHHHhhccceeeEEecccccCC
Confidence 555555444444444 4443333
No 396
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=51.13 E-value=1.4e+02 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.030 Sum_probs=54.2
Q ss_pred CCcceEEEEecc-CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHH------HHhCCceEEEecCCCC
Q psy3650 198 VKNKYTVLLPTY-NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQ------SIYGSEKIVLKPRKKK 270 (435)
Q Consensus 198 ~~~~isivip~~-n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~~~i~~~~~~~n 270 (435)
..|++.-+|..+ ++...++++|..+.. ..+.=+|=+|-.|++.-...+.... ...+++.+..-...-+
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYh-----prN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~ 150 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYH-----PRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVT 150 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcC-----CCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeec
Confidence 468999999988 777778887776632 2345566677777765444333222 2345544433222234
Q ss_pred CCHHHHH-------HHHHhhc-cCCEEEEEeCCCC
Q psy3650 271 LGLGTAY-------MHGLKYA-TGNFIIIMDADLS 297 (435)
Q Consensus 271 ~g~~~a~-------n~g~~~a-~~d~v~~~d~D~~ 297 (435)
.|-...+ ...++.+ .-||++.+.+.+.
T Consensus 151 WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDy 185 (421)
T PLN03183 151 YRGPTMVANTLHACAILLKRSKDWDWFINLSASDY 185 (421)
T ss_pred cCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcc
Confidence 4433222 2333322 3399999999886
No 397
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=50.85 E-value=1.7e+02 Score=25.71 Aligned_cols=92 Identities=12% Similarity=0.158 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhhcCC-CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC-----------CCCH-HHHHHHHH
Q psy3650 215 LPIIVYLITKYMDEGN-YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-----------KLGL-GTAYMHGL 281 (435)
Q Consensus 215 l~~~l~~l~~~~~~~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~-----------n~g~-~~a~n~g~ 281 (435)
+..+...+.+.+.... .++.++++.++.++...+.++++... ++..+.++.-+. .... ..++-...
T Consensus 12 ~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~ 90 (248)
T cd04194 12 APYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKK-YNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIP 90 (248)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHh-cCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHH
Confidence 3344334444333322 47899999988888888888887654 233444433211 1111 11222222
Q ss_pred hhc-cCCEEEEEeCCCCCCCccHHHHHH
Q psy3650 282 KYA-TGNFIIIMDADLSHHPKFIPEMIK 308 (435)
Q Consensus 282 ~~a-~~d~v~~~d~D~~~~~~~l~~~~~ 308 (435)
..- .-+-++++|+|..+-. .+..+..
T Consensus 91 ~ll~~~~rvlylD~D~lv~~-di~~L~~ 117 (248)
T cd04194 91 DLLPDYDKVLYLDADIIVLG-DLSELFD 117 (248)
T ss_pred HHhcccCEEEEEeCCEEecC-CHHHHhc
Confidence 222 3688999999997665 4666665
No 398
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=47.26 E-value=1.1e+02 Score=26.59 Aligned_cols=169 Identities=16% Similarity=0.144 Sum_probs=80.3
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccC--CE
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--NF 288 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~--d~ 288 (435)
....+..+++.+.+ .+. --+|++|-... ..+.++++... + .+.++.. ..........|++...+ |+
T Consensus 27 Gkpvl~~tl~~f~~---~~~-i~~Ivvv~~~~---~~~~~~~~~~~-~--~v~iv~G--G~tR~~SV~ngL~~l~~~~d~ 94 (221)
T PF01128_consen 27 GKPVLEYTLEAFLA---SPE-IDEIVVVVPPE---DIDYVEELLSK-K--KVKIVEG--GATRQESVYNGLKALAEDCDI 94 (221)
T ss_dssp TEEHHHHHHHHHHT---TTT-ESEEEEEESGG---GHHHHHHHHHH-T--TEEEEE----SSHHHHHHHHHHCHHCTSSE
T ss_pred CeEeHHHHHHHHhc---CCC-CCeEEEEecch---hHHHHHHhhcC-C--CEEEecC--ChhHHHHHHHHHHHHHcCCCE
Confidence 33444555555433 222 23666665332 33344555444 3 3444433 12345666677776543 69
Q ss_pred EEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecH
Q psy3650 289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKK 367 (435)
Q Consensus 289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (435)
|++=|+=-- ++++.+.+++..++++ .+.++......+. .....--. ...+..-...+...+.. -+|+.
T Consensus 95 VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~~DT-ik~v~~~~--------~v~~tldR~~l~~~QTP-Q~F~~ 163 (221)
T PF01128_consen 95 VLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPVTDT-IKRVDDDG--------FVTETLDRSKLWAVQTP-QAFRF 163 (221)
T ss_dssp EEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE-SSE-EEEESTTS--------BEEEEETGGGEEEEEEE-EEEEH
T ss_pred EEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEecccc-EEEEecCC--------cccccCCHHHeeeecCC-CeecH
Confidence 999887653 8999999999998752 3333332222211 00000000 00000001122222222 37999
Q ss_pred HHHHHhhhcc--cCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 368 QVLENLVSSC--VSKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 368 ~~~~~~~~~~--~~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
+.+.+..... ....++.|..++ ...|.++..+|-.
T Consensus 164 ~~l~~a~~~a~~~~~~~tDdasl~---~~~g~~v~~V~G~ 200 (221)
T PF01128_consen 164 ELLLEAYEKADEEGFEFTDDASLV---EAAGKKVAIVEGS 200 (221)
T ss_dssp HHHHHHHHTHHHHTHHHSSHHHHH---HHTTS-EEEEE--
T ss_pred HHHHHHHHHHHhcCCCccCHHHHH---HHcCCCEEEEeCC
Confidence 9999984332 223445555554 4559998887743
No 399
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=47.06 E-value=42 Score=29.32 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC-------------CCC-HHHHH
Q psy3650 214 NLPIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-------------KLG-LGTAY 277 (435)
Q Consensus 214 ~l~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~-------------n~g-~~~a~ 277 (435)
.+..+...+.+...... ..+.+++++++.+++..+.+++................. ... ...+.
T Consensus 10 y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 89 (250)
T PF01501_consen 10 YLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFAR 89 (250)
T ss_dssp GHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGG
T ss_pred HHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHH
Confidence 45555555554444433 578899999988877777776654433222122221110 111 11233
Q ss_pred HHHHhh-ccCCEEEEEeCCCCCCCccHHHHHHH
Q psy3650 278 MHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKL 309 (435)
Q Consensus 278 n~g~~~-a~~d~v~~~d~D~~~~~~~l~~~~~~ 309 (435)
-...+. ...|-++++|+|..+-. .+..+.+.
T Consensus 90 l~i~~ll~~~drilyLD~D~lv~~-dl~~lf~~ 121 (250)
T PF01501_consen 90 LFIPDLLPDYDRILYLDADTLVLG-DLDELFDL 121 (250)
T ss_dssp GGHHHHSTTSSEEEEE-TTEEESS--SHHHHC-
T ss_pred hhhHHHHhhcCeEEEEcCCeeeec-Chhhhhcc
Confidence 334445 56799999999998754 46666653
No 400
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=46.52 E-value=72 Score=31.68 Aligned_cols=79 Identities=18% Similarity=0.237 Sum_probs=54.6
Q ss_pred EEEEeCCCC-cchHHHHHHHHHHhCCceEEEecCCCCCCHH-HHHHHHHhhc------cCCEEEEEeCCCCCCCccHHHH
Q psy3650 235 IIVIDDGSP-DGTLDAAKQLQSIYGSEKIVLKPRKKKLGLG-TAYMHGLKYA------TGNFIIIMDADLSHHPKFIPEM 306 (435)
Q Consensus 235 iivvdd~s~-d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~-~a~n~g~~~a------~~d~v~~~d~D~~~~~~~l~~~ 306 (435)
|++|.||.- +...+.++++... +.. .+|.|+- +|...|+... +.|-|+++|+-+.-|-..+..+
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~~-----vi~---R~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~ 72 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCDK-----VIQ---RENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM 72 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH-----hEE---eccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence 466666654 4566777776542 333 3477844 7778888763 4588999988877777789999
Q ss_pred HHHHhcCCCceEEee
Q psy3650 307 IKLQQQENLDVVTGT 321 (435)
Q Consensus 307 ~~~~~~~~~~~v~~~ 321 (435)
.+.+++.++|+.+-.
T Consensus 73 f~~~~~~~~DfwGlT 87 (498)
T PF05045_consen 73 FERMEARDVDFWGLT 87 (498)
T ss_pred HHHhccCCCeEEeec
Confidence 999987777766543
No 401
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=46.24 E-value=1.5e+02 Score=27.83 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650 46 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~ 94 (435)
.|.++++-.++.... .+.++++.+|...+. .+..+++...+.+.++.+
T Consensus 93 ~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~-~l~~~l~~~~~~~~~~ti 143 (361)
T TIGR02091 93 QGTADAVYQNLDLIEDYDPEYVLILSGDHIYKM-DYEKMLDYHIESGADVTI 143 (361)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHHcCCCEEE
Confidence 688888888888764 578999999986655 477777766555554433
No 402
>PHA01631 hypothetical protein
Probab=44.38 E-value=25 Score=28.46 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=38.7
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC---CCCCHHHHHHHHHhh---ccCCEEEEEeCCCCCCCc
Q psy3650 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK---KKLGLGTAYMHGLKY---ATGNFIIIMDADLSHHPK 301 (435)
Q Consensus 232 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~---~n~g~~~a~n~g~~~---a~~d~v~~~d~D~~~~~~ 301 (435)
+++.++||+.=.+-|.-.++.. .+ +++..... .+.-.+..+...++. ..-|+++++|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~---~~--~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY---QE--KIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc---CC--ceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 6789999987665443322221 22 34433221 233355666667664 356888999999987764
No 403
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=44.21 E-value=1.5e+02 Score=28.54 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=44.3
Q ss_pred EEEccCCCCCCHHHHHHHHHhhc-cC--CEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650 37 IVLKPRKKKLGLGTAYMHGLKYA-TG--NFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG 95 (435)
Q Consensus 37 i~~~~~~~n~g~~~a~n~gl~~a-~g--d~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g 95 (435)
+....+.+..|-++|...+..+- .+ ..++.+.+|. .+.++.|+.|++.-.+.+..+.+-
T Consensus 69 v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvL 131 (460)
T COG1207 69 VEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVL 131 (460)
T ss_pred ceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEE
Confidence 33333677889999999999887 33 3688899999 778999998888776656666443
No 404
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=43.24 E-value=2.8e+02 Score=27.44 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=56.0
Q ss_pred EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHhh
Q psy3650 206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLGLGTAYMHGLKY 283 (435)
Q Consensus 206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~~~~~~~n~g~~~a~n~g~~~ 283 (435)
+|..+....+..+++.+... . .-+.++|-+ +.-...+++-....+ ..++++ ++...+.+.|+-.|...
T Consensus 32 l~l~~~~sllq~t~~r~~~~----~-~~~~iivt~---~~~~~~v~~ql~~~~~~~~~ii~--EP~~rnTApaialaa~~ 101 (478)
T PRK15460 32 LCLKGDLTMLQTTICRLNGV----E-CESPVVICN---EQHRFIVAEQLRQLNKLTENIIL--EPAGRNTAPAIALAALA 101 (478)
T ss_pred eECCCCCCHHHHHHHHHHhC----C-CCCcEEEeC---HHHHHHHHHHHHhcCCccccEEe--cCCCCChHHHHHHHHHH
Confidence 56666677788888776542 1 124445532 233334433223333 224555 44445556665555554
Q ss_pred c--c----CCEEEEEeCCCCCCC-ccHHHHHH-HH--hcCCCceEEeeeEEC
Q psy3650 284 A--T----GNFIIIMDADLSHHP-KFIPEMIK-LQ--QQENLDVVTGTRYVG 325 (435)
Q Consensus 284 a--~----~d~v~~~d~D~~~~~-~~l~~~~~-~~--~~~~~~~v~~~~~~~ 325 (435)
+ + ...++++-+|..+.. +.+.+.+. .+ .+.+.-+..|.....
T Consensus 102 ~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~ 153 (478)
T PRK15460 102 AKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDL 153 (478)
T ss_pred HHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 4 1 258999999987554 33333333 22 223444445544333
No 405
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=41.78 E-value=3e+02 Score=25.72 Aligned_cols=107 Identities=20% Similarity=0.177 Sum_probs=61.9
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhh-cCCCCeEEEEEeCCCCcchHHHHHHHHHHhCC-ceEEEecC--------CC
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMD-EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS-EKIVLKPR--------KK 269 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~-~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~~~~~--------~~ 269 (435)
..+.|+..+ ....+..+-.++.+.+. .+...+.+.|++|+-+++..+.++++...++. +.+..+.. ..
T Consensus 24 ~~i~Iv~~~--D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~~~~~~~ 101 (334)
T PRK15171 24 NSLDIAYGI--DKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLKSLPSTK 101 (334)
T ss_pred CceeEEEEC--cHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHhCCcccC
Confidence 346655554 23344444445554443 23456899999999998888888888777532 23333221 11
Q ss_pred CCCHHHHHHHHH-hhc--cCCEEEEEeCCCCCCCccHHHHHHH
Q psy3650 270 KLGLGTAYMHGL-KYA--TGNFIIIMDADLSHHPKFIPEMIKL 309 (435)
Q Consensus 270 n~g~~~a~n~g~-~~a--~~d~v~~~d~D~~~~~~~l~~~~~~ 309 (435)
+...+.=.+..+ +.- .-|-|+.+|+|.++.. .|.++...
T Consensus 102 ~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 102 NWTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred cCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 222222222222 222 3689999999998765 47777754
No 406
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=40.35 E-value=1.5e+02 Score=26.01 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=47.0
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFIIIMDADL-SHHPKFIPEMIK 83 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~-~~~~~~l~~~~~ 83 (435)
-||||+-....+...+-+-+ .....++.++ .+..........|++... .+||++-|+== .++++.+.++++
T Consensus 49 ~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v--~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~ 123 (230)
T COG1211 49 DEIVVVVSPEDDPYFEKLPK---LSADKRVEVV--KGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIE 123 (230)
T ss_pred CeEEEEEChhhhHHHHHhhh---hccCCeEEEe--cCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHH
Confidence 47888866655544332222 1112245543 344456777888888877 79999999865 567788899995
Q ss_pred HHh
Q psy3650 84 LQQ 86 (435)
Q Consensus 84 ~~~ 86 (435)
...
T Consensus 124 ~~~ 126 (230)
T COG1211 124 LAD 126 (230)
T ss_pred hhc
Confidence 553
No 407
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=40.28 E-value=2e+02 Score=23.35 Aligned_cols=31 Identities=6% Similarity=0.175 Sum_probs=23.2
Q ss_pred cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCC
Q psy3650 285 TGNFIIIMDADLS-HHPKFIPEMIKLQQQENL 315 (435)
Q Consensus 285 ~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~ 315 (435)
.+++++.+|.... ++...+.+.+..+...+.
T Consensus 66 ~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~ 97 (155)
T PF02590_consen 66 PNDYVILLDERGKQLSSEEFAKKLERWMNQGK 97 (155)
T ss_dssp TTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCccCChHHHHHHHHHHHhcCC
Confidence 6799999999985 999999999998765543
No 408
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=40.13 E-value=61 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHhhcc------CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 45 KLGLGTAYMHGLKYAT------GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 45 n~g~~~a~n~gl~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
..|.++++..++..+. .+.++++.+|.... ..+..+++.-.+.++++++..
T Consensus 100 ~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~~~a~~ti~~ 156 (436)
T PLN02241 100 FQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRESGADITIAC 156 (436)
T ss_pred ccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHHcCCCEEEEE
Confidence 3677888766654433 47789999998655 457777776656677765544
No 409
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=39.99 E-value=1.5e+02 Score=22.99 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=33.2
Q ss_pred ceEEEEeccCCCCC-hHHHHHHHHHHhhcCC----CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEe
Q psy3650 201 KYTVLLPTYNEKEN-LPIIVYLITKYMDEGN----YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK 265 (435)
Q Consensus 201 ~isivip~~n~~~~-l~~~l~~l~~~~~~~~----~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~ 265 (435)
+..++......-.. ....+..+.+...+.. .+++++.|.-....++.+.++++.++++. ...++
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~~-~~~~l 91 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFGP-GWIGL 91 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhCC-CcEEE
Confidence 45555554444443 4444555444322211 24888888755544455667777666542 34444
No 410
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=38.33 E-value=2.5e+02 Score=23.86 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=37.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhhccCC---EEEEEeCCCC-CCCccHHHHHHHHhcCCCc
Q psy3650 260 EKIVLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADLS-HHPKFIPEMIKLQQQENLD 316 (435)
Q Consensus 260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d---~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~ 316 (435)
..+...+.... ........++.....+ +++.+.+|.. ++|..+.+++..+.+...+
T Consensus 61 ~~v~~~~~~~~-~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 61 AKVIFRRGSLA-DDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SEEEE--TTSS-SHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred CeeEEcChhhc-CCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 46665544333 3445555666666666 9999999985 9999999999999877665
No 411
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=37.73 E-value=74 Score=26.33 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=33.4
Q ss_pred EEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
|||||.. .|+|..+-+.+ +..++ .....+.+...-.-+..+. -.+|+|.|+|. +=+.+...+..
T Consensus 4 evIVVEG--K~D~~~lk~~~-----d~~~I---~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~--~GekIRk~i~~ 69 (174)
T TIGR00334 4 EIIVVEG--KDDQARIKQAF-----DVDVI---ETNGSALKDETINLIKKAQKKQGVIILTDPDF--PGEKIRKKIEQ 69 (174)
T ss_pred eEEEEec--chHHHHHHHhc-----CceEE---EECCCccCHHHHHHHHHHhhcCCEEEEeCCCC--chHHHHHHHHH
Confidence 8899954 33455554333 11233 2233333444334444443 48999999995 33345555443
No 412
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=37.40 E-value=2.8e+02 Score=24.13 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHH----HHHHHHHhhccC
Q psy3650 211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLG----TAYMHGLKYATG 286 (435)
Q Consensus 211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~----~a~n~g~~~a~~ 286 (435)
....+..+|+.+.+.- + --+|++. -|.+++-..+++++..+ .+.++. |.. .-.-.+++.-++
T Consensus 27 ~~pmI~~~lervrks~---~-~d~ivvA--TS~~~~d~~l~~~~~~~---G~~vfr-----Gs~~dVL~Rf~~a~~a~~~ 92 (241)
T COG1861 27 GEPMIEYQLERVRKSK---D-LDKIVVA--TSDKEEDDALEEVCRSH---GFYVFR-----GSEEDVLQRFIIAIKAYSA 92 (241)
T ss_pred CCchHHHHHHHHhccc---c-ccceEEE--ecCCcchhHHHHHHHHc---CeeEec-----CCHHHHHHHHHHHHHhcCC
Confidence 3455777777765521 1 1255554 34445555666766554 244432 323 233344445577
Q ss_pred CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeE
Q psy3650 287 NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRY 323 (435)
Q Consensus 287 d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~ 323 (435)
+.|+-+-+|+- ++|+.+..++..+.+.+.|.+...-.
T Consensus 93 ~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~s~~~~ 130 (241)
T COG1861 93 DVVVRVTGDNPFLDPELVDAAVDRHLEKGADYVSNTGA 130 (241)
T ss_pred CeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccccccCC
Confidence 99999999996 99999999999877778887765443
No 413
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=36.94 E-value=2.5e+02 Score=24.09 Aligned_cols=46 Identities=9% Similarity=0.122 Sum_probs=31.3
Q ss_pred EEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 37 IVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 37 i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
+......+..|-+.+...+.....++ ++++.+|...+. -+..+++.
T Consensus 80 ~~~~~~~~~~Gta~~l~~~~~~i~~d-flv~~gD~i~~~-~l~~~l~~ 125 (216)
T cd02507 80 VITSDLCESAGDALRLRDIRGLIRSD-FLLLSCDLVSNI-PLSELLEE 125 (216)
T ss_pred EEEccCCCCCccHHHHHHHhhcCCCC-EEEEeCCEeecC-CHHHHHHH
Confidence 44444456778888888887777666 567999976554 46677753
No 414
>KOG2501|consensus
Probab=36.73 E-value=2.2e+02 Score=23.14 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHH---hhccCCEEEEEcCCCCC
Q psy3650 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL---KYATGNFIIIMDADLSH 73 (435)
Q Consensus 3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl---~~a~gd~i~~lD~D~~~ 73 (435)
...+|+|||.| |+|.+.+-..++..+++.. -.+++.. . ...+... ....-+-++.+..|...
T Consensus 64 ~~~~~fEVvfV---S~D~~~~~~~~y~~~~~~~-W~~iPf~----d-~~~~~l~~ky~v~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 64 DNAAPFEVVFV---SSDRDEESLDEYMLEHHGD-WLAIPFG----D-DLIQKLSEKYEVKGIPALVILKPDGTV 128 (157)
T ss_pred hcCCceEEEEE---ecCCCHHHHHHHHHhcCCC-eEEecCC----C-HHHHHHHHhcccCcCceeEEecCCCCE
Confidence 45668999999 6677776677776665543 3334432 1 1222222 22334778888888733
No 415
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.30 E-value=2e+02 Score=23.36 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=46.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCC---ceEEEccCCCCCCHHHHHHHHH--------hh-ccCCEEEEEcCCC-CCC
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGS---EKIVLKPRKKKLGLGTAYMHGL--------KY-ATGNFIIIMDADL-SHH 74 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~---~~i~~~~~~~n~g~~~a~n~gl--------~~-a~gd~i~~lD~D~-~~~ 74 (435)
+.|+.|---.+....+.+++|.+..+. +.++.++.... +.+....... +. ..+++++.||... .++
T Consensus 3 i~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~-~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~s 81 (155)
T PF02590_consen 3 IRIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKI-AKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQLS 81 (155)
T ss_dssp EEEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE-------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE--
T ss_pred EEEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccc-cccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccCC
Confidence 567777333333356778888877543 34444444332 1111111111 11 2589999999988 888
Q ss_pred CCcHHHHHHHHhcCCC---cEEEEe
Q psy3650 75 PKFIPEMIKLQQQENL---DVVTGT 96 (435)
Q Consensus 75 ~~~l~~~~~~~~~~~~---~~v~g~ 96 (435)
...+...++.+...+. .+++|.
T Consensus 82 S~~fA~~l~~~~~~g~~~i~F~IGG 106 (155)
T PF02590_consen 82 SEEFAKKLERWMNQGKSDIVFIIGG 106 (155)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEE-B
T ss_pred hHHHHHHHHHHHhcCCceEEEEEec
Confidence 8899999988766543 445554
No 416
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=36.28 E-value=1.8e+02 Score=26.67 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=38.2
Q ss_pred eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCC-------CCcHHHHHHHHhcCCCcEEE
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH-------PKFIPEMIKLQQQENLDVVT 94 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~-------~~~l~~~~~~~~~~~~~~v~ 94 (435)
.+.+..+..-.|.++|.-.+......+-++++.+|..++ ...+..+++...+.+.+.+.
T Consensus 103 ~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~ 168 (302)
T PRK13389 103 TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIM 168 (302)
T ss_pred eEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEE
Confidence 344433345578899988877775444456667888764 36788888876555555433
No 417
>KOG4179|consensus
Probab=34.92 E-value=67 Score=30.38 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=57.6
Q ss_pred cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCc--eEE--EecCCCCC----
Q psy3650 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE--KIV--LKPRKKKL---- 271 (435)
Q Consensus 200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~--~i~--~~~~~~n~---- 271 (435)
|.+-+.+.++|-.-.+...+..+.+ .+.+....-|.+-.|.+.|++.+.++++.+.-... .+. ....++.+
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~-~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~ 81 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEE-GDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEH 81 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhc-cCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCccc
Confidence 4455555556655555544443332 12222335677777888899999888886653221 222 22111111
Q ss_pred C-----H-HHHH-----HHHHhhcc---CCEEEEEeCCCC-CCCccHHHHHH
Q psy3650 272 G-----L-GTAY-----MHGLKYAT---GNFIIIMDADLS-HHPKFIPEMIK 308 (435)
Q Consensus 272 g-----~-~~a~-----n~g~~~a~---~d~v~~~d~D~~-~~~~~l~~~~~ 308 (435)
| . .... ..++..++ .||++|.|.|+. .+++.|..+..
T Consensus 82 ~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~ 133 (568)
T KOG4179|consen 82 GPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMN 133 (568)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHh
Confidence 0 0 0222 22333333 499999999997 56666665544
No 418
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=34.02 E-value=87 Score=31.20 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=33.8
Q ss_pred eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC
Q psy3650 207 PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR 267 (435)
Q Consensus 207 p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~ 267 (435)
|.|--++-.+.+..+|......-..---+++|||||+++....++++.. | .+.++++.+
T Consensus 393 PfYeleDvtrDl~~aLED~~RhGqKlPL~VlvDnGsTeEDipA~~~~k~-Y-gi~ivVVDH 451 (715)
T COG1107 393 PFYELEDVTRDLNFALEDAHRHGQKLPLLVLVDNGSTEEDIPAIKQLKA-Y-GIDIVVVDH 451 (715)
T ss_pred CceeHHhhhhhHHHHHHHHHhcCCccceEEEEcCCCcccccHHHHHHHh-c-CCCEEEEcC
Confidence 4454444444444444443333333346899999999876666666533 2 446666655
No 419
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=32.77 E-value=82 Score=26.04 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEE
Q psy3650 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL 264 (435)
Q Consensus 232 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~ 264 (435)
..++|.+|+.|++...+.++.+....+.+.+..
T Consensus 100 g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~ 132 (169)
T PF01729_consen 100 GADIIMLDNMSPEDLKEAVEELRELNPRVKIEA 132 (169)
T ss_dssp T-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEE
Confidence 468999999999999999998888888766655
No 420
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.26 E-value=1.3e+02 Score=29.34 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=37.6
Q ss_pred EEccCCCCCCHHHHHHHHHhhcc-CCEEEEEcCCC-CCCCCcHHHHHHHHhcCC
Q psy3650 38 VLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADL-SHHPKFIPEMIKLQQQEN 89 (435)
Q Consensus 38 ~~~~~~~n~g~~~a~n~gl~~a~-gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~ 89 (435)
.++..++..|.++++..++.... .++++++++|. .+.+..+..+++...+.+
T Consensus 72 ~~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~ 125 (456)
T PRK09451 72 NWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG 125 (456)
T ss_pred EEEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhcCC
Confidence 33334556688888888887754 47899999998 567888888887654333
No 421
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=32.17 E-value=3.5e+02 Score=23.67 Aligned_cols=122 Identities=14% Similarity=0.122 Sum_probs=67.0
Q ss_pred HHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCC-ccCcc--------------cc
Q psy3650 50 TAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG-VYGWD--------------FK 110 (435)
Q Consensus 50 ~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~-~~~~~--------------~~ 110 (435)
.-...+++.. ..++|+-+-+|. .++|..+..+++.+++.+++++.-........ ..++. +.
T Consensus 78 dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFS 157 (247)
T COG1212 78 DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFS 157 (247)
T ss_pred HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEE
Confidence 3344444444 358999999999 77999999999999888888876544222111 11111 11
Q ss_pred hhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHH--HHHHHhhcceeEeee
Q psy3650 111 RKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEM--VIRARQYNYTIGEVP 178 (435)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l--~~r~~~~g~~~~~~~ 178 (435)
|..++... .. .+....-.+-|..+||+.++++... .....-+..|- .+|+...|+++...-
T Consensus 158 Rs~iP~~r---d~--~~~~p~l~HIGIYayr~~~L~~f~~--~~ps~LE~~E~LEQLR~Le~G~kI~v~i 220 (247)
T COG1212 158 RAPIPYGR---DN--FGGTPFLRHIGIYAYRAGFLERFVA--LKPSPLEKIESLEQLRVLENGEKIHVEI 220 (247)
T ss_pred cCCCCCcc---cc--cCCcchhheeehHHhHHHHHHHHHh--cCCchhHHHHHHHHHHHHHcCCeeEEEE
Confidence 11111000 00 0000111123455899999998732 22333333333 457788999886544
No 422
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=31.74 E-value=3.1e+02 Score=25.87 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.0
Q ss_pred cCCEEEEEeCCCCCCCccHHHHH
Q psy3650 285 TGNFIIIMDADLSHHPKFIPEMI 307 (435)
Q Consensus 285 ~~d~v~~~d~D~~~~~~~l~~~~ 307 (435)
.+|++++-|.|-++.|+.|..+-
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr 200 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLR 200 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHH
Confidence 57999999999999998887764
No 423
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=31.70 E-value=43 Score=29.65 Aligned_cols=84 Identities=7% Similarity=-0.031 Sum_probs=45.8
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
-||+||=++....- +. .+... ..+.|.++..+.| .-..+-.-....+.+.|+.+|+|..++++.|+-..+..++
T Consensus 29 ~~IvVvWn~~~~~P-~~-~~~~~--~~vpV~~~~~~~n--sLnnRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~ 102 (247)
T PF09258_consen 29 RKIVVVWNNPNPPP-PS-SKWPS--TGVPVRVVRSSRN--SLNNRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWRE 102 (247)
T ss_dssp EEEEEEEE-TS--T-HH-HHHT-----S-EEEEEESSH--HGGGGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCC
T ss_pred CeEEEEeCCCCCCC-cc-cccCC--CCceEEEEecCCc--cHHhcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHh
Confidence 67888866532221 11 22211 1234555443322 1123334445667899999999999999999999999987
Q ss_pred CCCcEEEEee
Q psy3650 88 ENLDVVTGTR 97 (435)
Q Consensus 88 ~~~~~v~g~~ 97 (435)
.+..+|....
T Consensus 103 ~pdrlVGf~~ 112 (247)
T PF09258_consen 103 FPDRLVGFPP 112 (247)
T ss_dssp STTSEEES-E
T ss_pred ChhheeCCcc
Confidence 7766665443
No 424
>KOG2451|consensus
Probab=31.68 E-value=4.6e+02 Score=24.94 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH--HHhhc------cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCc
Q psy3650 245 GTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH--GLKYA------TGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316 (435)
Q Consensus 245 ~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~--g~~~a------~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~ 316 (435)
+..++=+.++. .|.++-+-+....|.||--..+. .++.. +..+|+|=|+|.....+ ..|...++..+-.
T Consensus 228 ~a~eig~~lct-sp~VrkisFTGST~VGKiL~~qsastvKkvslELGGNAPfIVFddadld~Av~--g~mA~KFr~~GQt 304 (503)
T KOG2451|consen 228 NAAEIGKELCT-SPDVRKISFTGSTNVGKILMAQSASTVKKVSLELGGNAPFIVFDDADLDQAVE--GAMACKFRNSGQT 304 (503)
T ss_pred ChHHHHHHhhc-CCceeeEEeeccchHHHHHHHhhhhhhhheehhhcCCCceEEecCcCHHHHHH--HHHHhhhccCCce
Confidence 34444445544 57777777777777776533222 22222 35999999988432211 1233345566667
Q ss_pred eEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccc--cccceeeecHHHHHHh
Q psy3650 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSD--LTGSFRLYKKQVLENL 373 (435)
Q Consensus 317 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~~~ 373 (435)
.|+++|.+.-+ +.+.++.+.+...+..+..+..+.. ++|. +++-+.++++
T Consensus 305 CVcaNR~yVh~-----~iyD~Fv~~l~e~vkkl~vGdG~~~~tt~Gp--LIne~av~Kv 356 (503)
T KOG2451|consen 305 CVCANRVYVHD-----SIYDKFVSKLAEAVKKLKVGDGLDPGTTQGP--LINEKAVEKV 356 (503)
T ss_pred eEecceeEEeh-----hhHHHHHHHHHHHHHheeccCCCCCCCccCC--ccCHHHHHHH
Confidence 88888877654 4677788888877777777666533 3444 8999999988
No 425
>PF13707 RloB: RloB-like protein
Probab=31.60 E-value=2.6e+02 Score=23.13 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEee
Q psy3650 286 GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 321 (435)
Q Consensus 286 ~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~ 321 (435)
.++.+++|-|. ....+.+.++++...+.+..++...
T Consensus 61 d~v~~V~D~D~~~~~~~~~~~~~~~a~~~~i~l~~Sn 97 (183)
T PF13707_consen 61 DEVWCVFDRDQNDFEHEKLEEAIKKAKRNKINLAVSN 97 (183)
T ss_pred CEEEEEEeCCCCcCcHHHHHHHHHhccccCeEEEEec
Confidence 37788999993 3555667777777665555555543
No 426
>PLN02190 cellulose synthase-like protein
Probab=30.85 E-value=1.5e+02 Score=30.82 Aligned_cols=54 Identities=19% Similarity=0.169 Sum_probs=37.4
Q ss_pred CcceEEEEeccCCCCCh-HHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENL-PIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQ 252 (435)
Q Consensus 199 ~~~isivip~~n~~~~l-~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~ 252 (435)
-|.|.|.|++++..+.- .-+..++.+.+.-.| ..+-++|.|||...-|.+-+.|
T Consensus 92 Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~E 148 (756)
T PLN02190 92 LPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKE 148 (756)
T ss_pred CCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHH
Confidence 58999999999943322 234555555554444 3467899999999888766655
No 427
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=30.60 E-value=3.6e+02 Score=23.41 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=44.1
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC--CEEEEEcCCC-CCCCCcHHHHHHH
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--NFIIIMDADL-SHHPKFIPEMIKL 84 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g--d~i~~lD~D~-~~~~~~l~~~~~~ 84 (435)
-+|+||-.. +-.+.++++... .. +.++. +......+...|++...+ |+|++-|+== .++++.+..+++.
T Consensus 45 ~~Ivvv~~~---~~~~~~~~~~~~-~~--v~iv~--GG~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~ 116 (221)
T PF01128_consen 45 DEIVVVVPP---EDIDYVEELLSK-KK--VKIVE--GGATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEA 116 (221)
T ss_dssp SEEEEEESG---GGHHHHHHHHHH-TT--EEEEE----SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHH
T ss_pred CeEEEEecc---hhHHHHHHhhcC-CC--EEEec--CChhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHH
Confidence 567777432 334455555544 33 44432 333456667777777554 6999988855 6688899999999
Q ss_pred Hhc
Q psy3650 85 QQQ 87 (435)
Q Consensus 85 ~~~ 87 (435)
+.+
T Consensus 117 ~~~ 119 (221)
T PF01128_consen 117 ARE 119 (221)
T ss_dssp HHH
T ss_pred HHh
Confidence 966
No 428
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=30.49 E-value=2e+02 Score=22.78 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred ceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy3650 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDD 240 (435)
Q Consensus 201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd 240 (435)
+|.++.-.-+.......+++.+.+.+.+.....+++=+.|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 5666666666666777777777777765444455555544
No 429
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=30.30 E-value=1.2e+02 Score=24.90 Aligned_cols=49 Identities=12% Similarity=0.096 Sum_probs=34.0
Q ss_pred eEEEccCCCCCCHHHH----HHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650 36 KIVLKPRKKKLGLGTA----YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a----~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~ 84 (435)
.+...-++.|.|+-.+ +|.--..-+-+|++++|+.+.+.+..|..++.+
T Consensus 110 Q~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwka 162 (163)
T PF01644_consen 110 QIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKA 162 (163)
T ss_pred EEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhh
Confidence 3333334567666433 333334456799999999999999999998875
No 430
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=30.17 E-value=1.9e+02 Score=24.30 Aligned_cols=90 Identities=11% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhh--ccC-CEEEEEcCCCCCCCCcHHHH
Q psy3650 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY--ATG-NFIIIMDADLSHHPKFIPEM 81 (435)
Q Consensus 5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~--a~g-d~i~~lD~D~~~~~~~l~~~ 81 (435)
+.++|++=.-||.+....+....+............-..+..|...+--..++. .++ ++++++.+|..+.+++.+.+
T Consensus 27 ~~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~~~~~~~lIlEDDv~~~~~f~~~l 106 (200)
T PF01755_consen 27 GINFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRIVDSGLEYALILEDDVIFDPDFKEFL 106 (200)
T ss_pred CCceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHHHHcCCCeEEEEeccccccccHHHHH
Confidence 557888888888876664444443222111000000012223433332233322 234 99999999999999866555
Q ss_pred HHHHhc-CCCcEEE
Q psy3650 82 IKLQQQ-ENLDVVT 94 (435)
Q Consensus 82 ~~~~~~-~~~~~v~ 94 (435)
-...+. +..+++.
T Consensus 107 ~~~~~~~~~~~~l~ 120 (200)
T PF01755_consen 107 EEILSHIPDWDFLR 120 (200)
T ss_pred HHHHhhcccccchh
Confidence 544433 2444543
No 431
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=29.81 E-value=88 Score=29.64 Aligned_cols=132 Identities=12% Similarity=0.175 Sum_probs=70.5
Q ss_pred CHHHHHHHHHh---hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhH-HHHHHHHHHHH
Q psy3650 272 GLGTAYMHGLK---YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-KLVSRGANYLT 347 (435)
Q Consensus 272 g~~~a~n~g~~---~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 347 (435)
|.+.|+-+-+. ....||++++.+|.++.-| .+.|++.-.+.++++.++....+........... .-..+...+..
T Consensus 102 Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmD-y~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~~i~~F~e 180 (393)
T COG0448 102 GTADAIYQNLLIIRRSDPEYVLILSGDHIYKMD-YSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENGRIIEFVE 180 (393)
T ss_pred ccHHHHHHhHHHHHhcCCCEEEEecCCEEEecC-HHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCCCEEeeee
Confidence 44555544333 4567999999999987766 5667766666788888887655543211110000 00000000000
Q ss_pred HHhcC-CCccccccceeeecHHHHHHhhhccc---CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650 348 QLLLR-PGVSDLTGSFRLYKKQVLENLVSSCV---SKGYVFQMEMVIRARQYNYTIGEVPIS 405 (435)
Q Consensus 348 ~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~D~el~lr~~~~G~~i~~~p~~ 405 (435)
+-..+ ......+=|..+|+++++.++.-... .....+.-++.-++...|. +.-.|+.
T Consensus 181 Kp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~-v~AY~f~ 241 (393)
T COG0448 181 KPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGK-VYAYEFS 241 (393)
T ss_pred ccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCC-EEEEecc
Confidence 00001 11112344567999999999854222 2223345567777777777 5555554
No 432
>KOG2733|consensus
Probab=29.60 E-value=4.5e+02 Score=24.83 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=56.3
Q ss_pred CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 278 (435)
Q Consensus 199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n 278 (435)
-+.+++-|.-.|+++ |++.|+-+.+....+ -.-++|++.|.+++.+. .++.++ .++++-.-.+-.-.+-+.-
T Consensus 31 ~~~~slavAGRn~~K-L~~vL~~~~~k~~~~-ls~~~i~i~D~~n~~Sl---~emak~---~~vivN~vGPyR~hGE~VV 102 (423)
T KOG2733|consen 31 FEGLSLAVAGRNEKK-LQEVLEKVGEKTGTD-LSSSVILIADSANEASL---DEMAKQ---ARVIVNCVGPYRFHGEPVV 102 (423)
T ss_pred ccCceEEEecCCHHH-HHHHHHHHhhccCCC-cccceEEEecCCCHHHH---HHHHhh---hEEEEeccccceecCcHHH
Confidence 456888888888775 666666665432222 22355777777665543 233332 1455432222222455555
Q ss_pred HHHhhccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650 279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ 310 (435)
Q Consensus 279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~ 310 (435)
.+.-....+++ |..=.|.+++.|-...
T Consensus 103 kacienG~~~v-----DISGEP~f~E~mq~kY 129 (423)
T KOG2733|consen 103 KACIENGTHHV-----DISGEPQFMERMQLKY 129 (423)
T ss_pred HHHHHcCCcee-----ccCCCHHHHHHHHHHH
Confidence 55444455554 6778899999997654
No 433
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=29.27 E-value=1.1e+02 Score=22.66 Aligned_cols=26 Identities=12% Similarity=0.242 Sum_probs=14.4
Q ss_pred eEEEEEeCCCCcChHHHHHHHHHHhCC
Q psy3650 8 YEIIVIDDGSPDGTLDAAKQLQSIYGS 34 (435)
Q Consensus 8 ~EiivvDd~S~d~t~~i~~~~~~~~~~ 34 (435)
...|+|-|.+..+ .++-.++++++|.
T Consensus 65 ~kfiLIGDsgq~D-peiY~~ia~~~P~ 90 (100)
T PF09949_consen 65 RKFILIGDSGQHD-PEIYAEIARRFPG 90 (100)
T ss_pred CcEEEEeeCCCcC-HHHHHHHHHHCCC
Confidence 3444444433322 6677777777764
No 434
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.03 E-value=1.2e+02 Score=31.66 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=32.0
Q ss_pred EEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCC
Q psy3650 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTG 102 (435)
Q Consensus 64 i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~ 102 (435)
++.+|.|..-..+.++.++..+.+..+|+++|.+....+
T Consensus 509 v~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG 547 (730)
T COG1198 509 IIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKG 547 (730)
T ss_pred EEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcC
Confidence 446789999999999999999988899999998744433
No 435
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=28.71 E-value=5.8e+02 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.1
Q ss_pred eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCc-chHHHHHHH
Q psy3650 207 PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD-GTLDAAKQL 253 (435)
Q Consensus 207 p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~ 253 (435)
++.+....+.-.++++...-......+.++++....++ +|.+.++++
T Consensus 103 ~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~ 150 (469)
T PLN02474 103 EVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKY 150 (469)
T ss_pred EcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHc
Confidence 45566667776777776644445567888999887775 588888875
No 436
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.80 E-value=94 Score=28.42 Aligned_cols=29 Identities=14% Similarity=0.495 Sum_probs=26.1
Q ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 59 ATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 59 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
..|+|++.|.+|....|+|+..+.+.+.+
T Consensus 168 ~~~~YyL~LEDDVia~~~f~~~i~~~v~~ 196 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPGFLSRIKRFVEA 196 (297)
T ss_pred hcCCeEEEecCCeEechhHHHHHHHHHHH
Confidence 35899999999999999999999998865
No 437
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=27.45 E-value=3.9e+02 Score=22.78 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=27.7
Q ss_pred eEEEccCCCCCCHHHHHHHHHhh-ccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650 36 KIVLKPRKKKLGLGTAYMHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKLQQQ 87 (435)
Q Consensus 36 ~i~~~~~~~n~g~~~a~n~gl~~-a~gd~i~~lD~D~~~~~~~l~~~~~~~~~ 87 (435)
.+.++..++..|.+.+....... .-.+.++++.+|...+. -+..+++...+
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~~~~flv~~gD~i~~~-dl~~~l~~h~~ 129 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLIRGDFILVSGDVVSNI-DLKEILEEHKE 129 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhccccCCCEEEEeCCeeecc-CHHHHHHHHHH
Confidence 34544445555656554322111 11344678999986654 46677776544
No 438
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=27.25 E-value=4.3e+02 Score=25.44 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650 46 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT 96 (435)
Q Consensus 46 ~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~ 96 (435)
.|.++++... ....|+++++++|. ...++.++.+.+ .+.++++..
T Consensus 80 ~gt~~al~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~~----~~~~~~v~~ 125 (430)
T PRK14359 80 PGTGGALMGI--EPKHERVLILNGDMPLVEKDELEKLLE----NDADIVMSV 125 (430)
T ss_pred CCcHHHHhhc--ccCCCeEEEEECCccCCCHHHHHHHHh----CCCCEEEEE
Confidence 5666666442 22368999999998 445666665543 455554443
No 439
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=27.04 E-value=49 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=11.0
Q ss_pred CCcceEEEEeccC
Q psy3650 198 VKNKYTVLLPTYN 210 (435)
Q Consensus 198 ~~~~isivip~~n 210 (435)
-.|+||.|||+-|
T Consensus 65 FGPkiSFVIPCN~ 77 (78)
T PF15224_consen 65 FGPKISFVIPCNN 77 (78)
T ss_pred eCCceeEEEeCCC
Confidence 3799999999865
No 440
>KOG1111|consensus
Probab=27.01 E-value=4.1e+02 Score=25.09 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=29.6
Q ss_pred eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC-cchHHHHHHHHHH
Q psy3650 207 PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP-DGTLDAAKQLQSI 256 (435)
Q Consensus 207 p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~ 256 (435)
.+||.... .+++-+.+ ..+.+++.+++++-||.. +...+.++++.-+
T Consensus 204 LvyrKGiD--ll~~iIp~-vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~ 251 (426)
T KOG1111|consen 204 LVYRKGID--LLLEIIPS-VCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQ 251 (426)
T ss_pred eeeccchH--HHHHHHHH-HHhcCCCeeEEEecCCcccchHHHHHHHhhcc
Confidence 35775543 23333333 344578999999999997 4666777766443
No 441
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=26.01 E-value=1.5e+02 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=16.7
Q ss_pred CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650 62 NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 97 (435)
Q Consensus 62 d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~ 97 (435)
+.-++.|.|-.-+|+.++++-+.+ ..+|+++++.
T Consensus 32 ~l~~~~~~el~~~~~~~~~~~~ai--a~ADii~~sm 65 (164)
T PF11965_consen 32 ELSVFAAAELERDPEALEECEAAI--ARADIIFGSM 65 (164)
T ss_pred EEEEEeHHHhhcChHHHHHHHHHH--HhCCEEEeeh
Confidence 344444444445555555555555 3445555553
No 442
>KOG2287|consensus
Probab=26.00 E-value=1.9e+02 Score=27.25 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=74.5
Q ss_pred HHhCCceEEEccCCCCCC-----HHHHHHHHHhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCC
Q psy3650 30 SIYGSEKIVLKPRKKKLG-----LGTAYMHGLKYAT-GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG 103 (435)
Q Consensus 30 ~~~~~~~i~~~~~~~n~g-----~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~ 103 (435)
+.+.+ |++....+++. .-..+..+...+. .++|+-.|+|..+.++.|..+++...++..+..+|........
T Consensus 153 ~~ygD--Ii~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p 230 (349)
T KOG2287|consen 153 RLYGD--IIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPP 230 (349)
T ss_pred HHhCC--EEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCC
Confidence 33444 44444444433 2355666666554 7999999999999999888888877556677888875444211
Q ss_pred ccCcccchhhhhchHHHHHHHHhCCC-c-cccccceehhhHHHHHHhhccccccCc--hhhHHHHHHHHhh-cceeEe
Q psy3650 104 VYGWDFKRKLVSRGANYLTQLLLRPG-V-SDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQY-NYTIGE 176 (435)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~l~~r~~~~-g~~~~~ 176 (435)
.|...++.. .....+... . .-..|+..++++++.+.+........+ .+|.-++.-+.+. |+....
T Consensus 231 ------~R~~~~Kwy--Vp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~ 300 (349)
T KOG2287|consen 231 ------IRDKTSKWY--VPESEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVN 300 (349)
T ss_pred ------CCCCCCCCc--cCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCccc
Confidence 111111111 112222221 2 222455678999999887333222222 3454444433333 555433
No 443
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=25.97 E-value=4.1e+02 Score=22.51 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=39.0
Q ss_pred ceEEEccCCCCCCHHHHHHHHHhhccCC---EEEEEcCCC-CCCCCcHHHHHHHHhcCCCc
Q psy3650 35 EKIVLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADL-SHHPKFIPEMIKLQQQENLD 91 (435)
Q Consensus 35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd---~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~ 91 (435)
..+...+.+.. ........++..+..+ +++.+.+|. .++|..+.++++.+.+...+
T Consensus 61 ~~v~~~~~~~~-~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 61 AKVIFRRGSLA-DDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SEEEE--TTSS-SHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred CeeEEcChhhc-CCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 46665554433 3445556777777766 999999999 77999999999999887766
No 444
>KOG1148|consensus
Probab=25.59 E-value=1.9e+02 Score=29.11 Aligned_cols=68 Identities=18% Similarity=0.138 Sum_probs=40.6
Q ss_pred CCCCcChHHHHHHHHHHhCCceEEEccCCCCC----CHHHHHH--HHHhhccCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 15 DGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKL----GLGTAYM--HGLKYATGNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 15 d~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~----g~~~a~n--~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
++++..|.+++++.-+.-..-.+...+.++|. |++.|.| .|.+.+.|. +++|-=||.-++.-=++..+
T Consensus 228 gent~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G-~cyLRfDDTNPEkEee~yf~ 301 (764)
T KOG1148|consen 228 GENTQHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGG-VCYLRFDDTNPEKEEEEYFE 301 (764)
T ss_pred CCCccchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCC-eEEEecCCCCcchhhHHHHH
Confidence 55688899999877665554455666767763 6666655 454444444 45555555555533333333
No 445
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=25.52 E-value=3.5e+02 Score=21.64 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHhhc-CCCCeEEEEEeCCCCcchHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650 214 NLPIIVYLITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291 (435)
Q Consensus 214 ~l~~~l~~l~~~~~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~ 291 (435)
.+...+......+.. ....-.||++.||-.++..+..+.+..... .+.+..+......+ ...+........|.|+.+
T Consensus 81 ~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~~~-~~~l~~ia~~~gG~~~~~ 159 (171)
T cd01461 81 NMNDALEAALELLNSSPGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSDVN-TYLLERLAREGRGIARRI 159 (171)
T ss_pred CHHHHHHHHHHhhccCCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCccC-HHHHHHHHHcCCCeEEEe
Confidence 344444444333332 334568999999987666655555544322 34454443321111 233444444445677666
Q ss_pred EeCC
Q psy3650 292 MDAD 295 (435)
Q Consensus 292 ~d~D 295 (435)
-|.+
T Consensus 160 ~~~~ 163 (171)
T cd01461 160 YETD 163 (171)
T ss_pred cChH
Confidence 6654
No 446
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=24.30 E-value=2.5e+02 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred cCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650 60 TGNFIIIMDADLSHHPKFIPEMIK 83 (435)
Q Consensus 60 ~gd~i~~lD~D~~~~~~~l~~~~~ 83 (435)
.+|+|++.|.|.++.|+.+..+-.
T Consensus 178 ~dDliivSDvDEIP~p~~l~~Lr~ 201 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFLRW 201 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHHHh
Confidence 479999999999999998887743
No 447
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=24.05 E-value=4.2e+02 Score=26.13 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCC-CCCcHHHHHHHH---hcCCCcEEEEe
Q psy3650 61 GNFIIIMDADLSH-HPKFIPEMIKLQ---QQENLDVVTGT 96 (435)
Q Consensus 61 gd~i~~lD~D~~~-~~~~l~~~~~~~---~~~~~~~v~g~ 96 (435)
.++++++-+|..+ ++..+..+++.. .+.+..+++|.
T Consensus 104 ~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi 143 (468)
T TIGR01479 104 DPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGI 143 (468)
T ss_pred CcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4689999999755 445677776643 22344444444
No 448
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=23.43 E-value=3.7e+02 Score=21.74 Aligned_cols=37 Identities=27% Similarity=0.274 Sum_probs=25.6
Q ss_pred EEecCCCCCCHHH-HHHHHHhhcc-CCEEEEEeCCCCCC
Q psy3650 263 VLKPRKKKLGLGT-AYMHGLKYAT-GNFIIIMDADLSHH 299 (435)
Q Consensus 263 ~~~~~~~n~g~~~-a~n~g~~~a~-~d~v~~~d~D~~~~ 299 (435)
.+....+..||.. +.|.|...+. |.=++++|.|.+-+
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~ 41 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGP 41 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 3444455566664 7888888774 77899999997643
No 449
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=23.27 E-value=81 Score=29.09 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHhhccCCEEEEEcCCCCCCCC-------cHHHHHHHHh
Q psy3650 49 GTAYMHGLKYATGNFIIIMDADLSHHPK-------FIPEMIKLQQ 86 (435)
Q Consensus 49 ~~a~n~gl~~a~gd~i~~lD~D~~~~~~-------~l~~~~~~~~ 86 (435)
.+.+|-|+-.++-+|++++|+|+.+..+ ++++.+..+.
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~ 126 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL 126 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence 4568888888889999999999987666 6666666553
No 450
>KOG1467|consensus
Probab=23.26 E-value=2.5e+02 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=38.3
Q ss_pred EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceE
Q psy3650 205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262 (435)
Q Consensus 205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i 262 (435)
+|.+|.....+...|... .+...++.|+|||.-+.-+-+..++.+....-+...
T Consensus 362 viltyg~s~vV~~ill~A----~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctY 415 (556)
T KOG1467|consen 362 VLLTYGSSSVVNMILLEA----KELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTY 415 (556)
T ss_pred EEEEecchHHHHHHHHHH----HHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEE
Confidence 577888777666555432 344568999999988887888889998776443333
No 451
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=22.88 E-value=78 Score=25.49 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=20.4
Q ss_pred CCCCCCCeEEEEEeCCCCcChHHHHHHHHHHh
Q psy3650 1 MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY 32 (435)
Q Consensus 1 l~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~ 32 (435)
|++.+.+||+-|| |.-.|.+.+.+|+++.
T Consensus 25 L~~fgi~ye~~Vv---SAHRTPe~m~~ya~~a 53 (162)
T COG0041 25 LEEFGVPYEVRVV---SAHRTPEKMFEYAEEA 53 (162)
T ss_pred HHHcCCCeEEEEE---eccCCHHHHHHHHHHH
Confidence 3456778888888 6667777777776543
No 452
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=22.73 E-value=1.2e+02 Score=26.10 Aligned_cols=53 Identities=19% Similarity=0.185 Sum_probs=37.3
Q ss_pred EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEE
Q psy3650 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL 264 (435)
Q Consensus 203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~ 264 (435)
.|||+-.|++. |+... +..+.+.-.++|=+..+.-++.++.+.+.||+..+.+
T Consensus 31 ~VIi~gR~e~~-----L~e~~----~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli 83 (245)
T COG3967 31 TVIICGRNEER-----LAEAK----AENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI 83 (245)
T ss_pred EEEEecCcHHH-----HHHHH----hcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence 46677776542 22222 2345666778888888888999999999999988776
No 453
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.42 E-value=4.4e+02 Score=21.65 Aligned_cols=87 Identities=14% Similarity=0.211 Sum_probs=46.7
Q ss_pred CeEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCCCHH--HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHH
Q psy3650 232 PYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLG--TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 308 (435)
Q Consensus 232 ~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~g~~--~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~ 308 (435)
...|.++ |++++.. +..+.+.+.+|+..+.-... ...+.. ..+-..++.+..|+|++-=+- --.+.++.+..+
T Consensus 46 ~~~v~ll--G~~~~~~~~~~~~l~~~yp~l~i~g~~~-g~~~~~~~~~i~~~I~~~~pdiv~vglG~-PkQE~~~~~~~~ 121 (171)
T cd06533 46 GLRVFLL--GAKPEVLEKAAERLRARYPGLKIVGYHH-GYFGPEEEEEIIERINASGADILFVGLGA-PKQELWIARHKD 121 (171)
T ss_pred CCeEEEE--CCCHHHHHHHHHHHHHHCCCcEEEEecC-CCCChhhHHHHHHHHHHcCCCEEEEECCC-CHHHHHHHHHHH
Confidence 5688888 6665554 44457888899877765433 233332 223455566667877765431 122234444444
Q ss_pred HHhcCCCceEEeeeE
Q psy3650 309 LQQQENLDVVTGTRY 323 (435)
Q Consensus 309 ~~~~~~~~~v~~~~~ 323 (435)
.+ ..+..+.+|.-.
T Consensus 122 ~l-~~~v~~~vG~~~ 135 (171)
T cd06533 122 RL-PVPVAIGVGGSF 135 (171)
T ss_pred HC-CCCEEEEeceee
Confidence 44 334444444433
No 454
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=22.08 E-value=5.2e+02 Score=22.31 Aligned_cols=37 Identities=27% Similarity=0.571 Sum_probs=26.5
Q ss_pred ccCCEEEEEeCCCC-CCCc-cHHHHHHHHhcCCCceEEeeeEE
Q psy3650 284 ATGNFIIIMDADLS-HHPK-FIPEMIKLQQQENLDVVTGTRYV 324 (435)
Q Consensus 284 a~~d~v~~~d~D~~-~~~~-~l~~~~~~~~~~~~~~v~~~~~~ 324 (435)
...|+|+++|+|.- +.|+ .|++.+ +++.|++.-.|..
T Consensus 40 ~~~~~vlflDaDigVvNp~~~iEefi----d~~~Di~fydR~~ 78 (222)
T PF03314_consen 40 PEYDWVLFLDADIGVVNPNRRIEEFI----DEGYDIIFYDRFF 78 (222)
T ss_pred ccCCEEEEEcCCceeecCcccHHHhc----CCCCcEEEEeccc
Confidence 35699999999984 6665 444444 6788888776655
No 455
>KOG0385|consensus
Probab=21.75 E-value=8.9e+02 Score=25.67 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEeCCCCc-c-hHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEe
Q psy3650 216 PIIVYLITKYMDEGNYPYEIIVIDDGSPD-G-TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 293 (435)
Q Consensus 216 ~~~l~~l~~~~~~~~~~~eiivvdd~s~d-~-t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d 293 (435)
.++|+-+..++. ...|+.+=+| ||+. + -.+.++.+.+.....-|..+ ...-.| .|+..+.+|.|++.|
T Consensus 497 t~mLDILeDyc~--~R~y~ycRiD-GSt~~eeR~~aI~~fn~~~s~~FiFlL-STRAGG------LGINL~aADtVIlyD 566 (971)
T KOG0385|consen 497 TRMLDILEDYCM--LRGYEYCRLD-GSTSHEEREDAIEAFNAPPSEKFIFLL-STRAGG------LGINLTAADTVILYD 566 (971)
T ss_pred HHHHHHHHHHHH--hcCceeEeec-CCCCcHHHHHHHHhcCCCCcceEEEEE-eccccc------cccccccccEEEEec
Confidence 344544444433 3467888775 5553 3 33445666544322223333 222333 477889999999999
Q ss_pred CCCCCCCccHHHHHHHHhcCCCceEEeeeEECC
Q psy3650 294 ADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT 326 (435)
Q Consensus 294 ~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~ 326 (435)
+|-- |-..|..|-++-+=...--|.-.|....
T Consensus 567 SDWN-PQ~DLQAmDRaHRIGQ~K~V~V~RLite 598 (971)
T KOG0385|consen 567 SDWN-PQVDLQAMDRAHRIGQKKPVVVYRLITE 598 (971)
T ss_pred CCCC-chhhhHHHHHHHhhCCcCceEEEEEecc
Confidence 9954 3344777766544222333444444443
No 456
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=21.51 E-value=4.5e+02 Score=21.40 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=27.4
Q ss_pred cCCEEEEEeCCCC-CCCccHHHHHHHHhcCC---CceEEe
Q psy3650 285 TGNFIIIMDADLS-HHPKFIPEMIKLQQQEN---LDVVTG 320 (435)
Q Consensus 285 ~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~---~~~v~~ 320 (435)
.+++++.+|.... ++...+.+.+..+...+ ...++|
T Consensus 66 ~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IG 105 (157)
T PRK00103 66 KGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIG 105 (157)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEc
Confidence 4789999999986 89999999998775433 344444
No 457
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=21.11 E-value=1.6e+02 Score=24.33 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCceEEEecCCCCCCHH-HHHHHHHhhcc----CCEEEEEeCCCCCCCccHHH
Q psy3650 258 GSEKIVLKPRKKKLGLG-TAYMHGLKYAT----GNFIIIMDADLSHHPKFIPE 305 (435)
Q Consensus 258 ~~~~i~~~~~~~n~g~~-~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~ 305 (435)
.++..-+.+...+.|++ .++..|++.|+ ..+++.+|.|+..+...|..
T Consensus 99 GHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~ 151 (174)
T COG3981 99 GHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEA 151 (174)
T ss_pred CcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHh
Confidence 45556677777778877 56788888885 38999999999888765543
No 458
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=20.83 E-value=4.3e+02 Score=20.89 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=29.4
Q ss_pred ChHHHHHHHHHHhhcCCCCeEEEEEeCCCC-cchHHHHHHHHHHhCCceEEEec
Q psy3650 214 NLPIIVYLITKYMDEGNYPYEIIVIDDGSP-DGTLDAAKQLQSIYGSEKIVLKP 266 (435)
Q Consensus 214 ~l~~~l~~l~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~~~~i~~~~ 266 (435)
.+...|+...+........-.|+++-||.. .+..++++........+++..+.
T Consensus 79 ~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~ 132 (155)
T PF13768_consen 79 DLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFG 132 (155)
T ss_pred cHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEE
Confidence 344555544443323344568899999985 45556665555433444555443
No 459
>PF06076 Orthopox_F14: Orthopoxvirus F14 protein; InterPro: IPR009280 This family consists of several short Orthopoxvirus F14 proteins. The function of this protein is unknown.
Probab=20.55 E-value=92 Score=20.31 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcE
Q psy3650 43 KKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 92 (435)
Q Consensus 43 ~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 92 (435)
++..|.+.-+|.-+.+.+ .+|-|..++++.+.++++.+.+-++|+
T Consensus 7 segl~is~dlnsii~q~s-----t~dmdieided~i~ellniltelgcdv 51 (73)
T PF06076_consen 7 SEGLGISTDLNSIISQQS-----TSDMDIEIDEDDIMELLNILTELGCDV 51 (73)
T ss_pred ccccCcchhHHHHhcccc-----cccccceeCHHHHHHHHHHHHHhCCCc
Confidence 567788888888887655 467788888889999999997777665
No 460
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.52 E-value=2.6e+02 Score=19.80 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=24.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC
Q psy3650 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR 267 (435)
Q Consensus 232 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~ 267 (435)
...++++-++.++++.+.+..++..+ ++.+..+..
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~-~Vp~~~~~s 61 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEK-GVPVSKVDS 61 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHc-CCCEEEECC
Confidence 45677776666668888888888765 456665543
No 461
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=20.22 E-value=1.6e+02 Score=23.34 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=25.6
Q ss_pred eEEEccCCCC--CCHHHHHHHHHhhcc----CCEEEEEcCCCCCC
Q psy3650 36 KIVLKPRKKK--LGLGTAYMHGLKYAT----GNFIIIMDADLSHH 74 (435)
Q Consensus 36 ~i~~~~~~~n--~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~ 74 (435)
+|.++.+.++ ..+|.-+|.|+..|. -|+++|-|-|..+.
T Consensus 81 ~I~vieQ~~~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~ 125 (136)
T PF13733_consen 81 RIFVIEQVDNGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPE 125 (136)
T ss_dssp EEEEEEE-SSS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEES
T ss_pred EEEEEeeccCCCCchhhhhhHHHHHHhhccCCCEEEEeccccccc
Confidence 5666544433 457888999998886 38999999997543
Done!