RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3650
(435 letters)
>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase.
Length = 243
Score = 394 bits (1014), Expect = e-138
Identities = 154/238 (64%), Positives = 192/238 (80%), Gaps = 1/238 (0%)
Query: 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY 257
KY++++PTYNE+ N+ +IVYLI K + + +EIIV+DDGSPDGT D KQLQ +Y
Sbjct: 7 GAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVY 65
Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
G ++I+L+PR KLGLGTAY+HGLK+A+G+F++IMDADLSHHPK++P IK Q++ D+
Sbjct: 66 GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADI 125
Query: 318 VTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC 377
VTGTRYV GGV+GWD +RKL SRGAN L Q LL PGVSDLTGSFRLYK+ LE+LVSS
Sbjct: 126 VTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSV 185
Query: 378 VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
VSKGYVFQME+++RA + Y I EVPI+FVDRVYGESKLGG+EI Q+ K LLYL TT
Sbjct: 186 VSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKLGGSEIVQYLKGLLYLLLTT 243
Score = 317 bits (814), Expect = e-107
Identities = 122/178 (68%), Positives = 149/178 (83%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
+EIIV+DDGSPDGT D KQLQ +YG ++I+L+PR KLGLGTAY+HGLK+A+G+F++IM
Sbjct: 41 FEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIM 100
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
DADLSHHPK++P IK Q++ D+VTGTRYV GGV+GWD +RKL SRGAN L Q LL
Sbjct: 101 DADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW 160
Query: 128 PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV 185
PGVSDLTGSFRLYK+ LE+LVSS VSKGYVFQME+++RA + Y I EVPI+FVDRV
Sbjct: 161 PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRV 218
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 360 bits (926), Expect = e-125
Identities = 117/228 (51%), Positives = 160/228 (70%), Gaps = 4/228 (1%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
+++PTYNE+EN+P ++ + + YEIIV+DD SPDGT + ++L Y ++
Sbjct: 1 IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVR 56
Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 323
L R K GLG+AY+ G K A G+ I++MDADLSH P++IPE+++ Q + D+V G+RY
Sbjct: 57 LIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRY 116
Query: 324 VGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV 383
V GGV GW KRKL+SRGAN L +LLL VSD T FR Y+++VLE L+ S VSKGY
Sbjct: 117 VEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYK 176
Query: 384 FQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYL 431
FQ+E+++RAR+ Y I EVPI+FVDR +GESKLGG EI ++ K LL L
Sbjct: 177 FQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVEYLKGLLRL 224
Score = 297 bits (762), Expect = e-100
Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 2/181 (1%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
YEIIV+DD SPDGT + ++L Y ++ L R K GLG+AY+ G K A G+ I
Sbjct: 25 GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYIEGFKAARGDVI 82
Query: 65 IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 124
++MDADLSH P++IPE+++ Q + D+V G+RYV GGV GW KRKL+SRGAN L +L
Sbjct: 83 VVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARL 142
Query: 125 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDR 184
LL VSD T FR Y+++VLE L+ S VSKGY FQ+E+++RAR+ Y I EVPI+FVDR
Sbjct: 143 LLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDR 202
Query: 185 V 185
Sbjct: 203 E 203
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 216 bits (552), Expect = 8e-69
Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 4/189 (2%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
V++P YNE+EN+P +V + ++EG Y YEIIV+DDGS DGT + A++L + +++
Sbjct: 1 VVIPAYNEEENIPELVERLLAVLEEG-YDYEIIVVDDGSTDGTAEIARELAARVPRVRVI 59
Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 323
R G G A G K A G+ ++ MDADL H P+ IP++++ + DVV G+R+
Sbjct: 60 RLSRNF--GKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117
Query: 324 VGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV 383
V GG G R+L SR N+L +LLL +SD FRL++++VLE L+S S G+
Sbjct: 118 VR-GGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFE 176
Query: 384 FQMEMVIRA 392
F +E+++ A
Sbjct: 177 FGLELLVGA 185
Score = 190 bits (486), Expect = 5e-59
Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%)
Query: 3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
E Y YEIIV+DDGS DGT + A++L + +++ R G G A G K A G+
Sbjct: 24 EEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF--GKGAAVRAGFKAARGD 81
Query: 63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT 122
++ MDADL H P+ IP++++ + DVV G+R+V GG G R+L SR N+L
Sbjct: 82 IVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVR-GGGAGMPLLRRLGSRLFNFLI 140
Query: 123 QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA 167
+LLL +SD FRL++++VLE L+S S G+ F +E+++ A
Sbjct: 141 RLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 140 bits (355), Expect = 2e-39
Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 5/214 (2%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
V++P YNE++ LP + +Y++E ++ YEIIV+DDGS DGT + A++L +
Sbjct: 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIR 60
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
VL K G G A G+ A G++I+ DADL+ + + ++ + + D+ G+R
Sbjct: 61 VLT-LPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR 119
Query: 323 YV-GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG 381
+ V + R L+ RG N+L +LLL G+ D F+L+ + L +
Sbjct: 120 AHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLER 179
Query: 382 YVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
+ F +E+++ AR+ Y I EVP+ +V+ SK
Sbjct: 180 WAFDVELLVLARRLGYPIEEVPVRWVEI--PGSK 211
Score = 125 bits (316), Expect = 8e-34
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 2/180 (1%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
++ YEIIV+DDGS DGT + A++L + VL K G G A G+ A G++I
Sbjct: 28 SFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLT-LPKNRGKGGAVRAGMLAARGDYI 86
Query: 65 IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYV-GTGGVYGWDFKRKLVSRGANYLTQ 123
+ DADL+ + + ++ + + D+ G+R + V + R L+ RG N+L +
Sbjct: 87 LFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVR 146
Query: 124 LLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 183
LLL G+ D F+L+ + L + + F +E+++ AR+ Y I EVP+ +V+
Sbjct: 147 LLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVE 206
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 126 bits (318), Expect = 2e-34
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
+++P YNE+ENLP + + ++ Y YEII +DDGS D TL+ ++L + K++
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI 60
Query: 264 LKPRKKKL----GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
+L G A + GL +A G+ +I MDADL P+ IPEM+ + +E DVV
Sbjct: 61 ------RLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLA-KWEEGYDVVY 113
Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVS 375
G R + ++L S+ L L + D G FRL ++V++ L+
Sbjct: 114 GVRKNRKES-----WLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164
Score = 107 bits (269), Expect = 2e-27
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)
Query: 1 MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKL----GLGTAYMHGL 56
++ Y YEII +DDGS D TL+ ++L + K++ +L G A + GL
Sbjct: 23 LESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI------RLSRNFGQQAALLAGL 76
Query: 57 KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 116
+A G+ +I MDADL P+ IPEM+ + +E DVV G R + ++L S+
Sbjct: 77 DHARGDAVITMDADLQDPPELIPEMLA-KWEEGYDVVYGVRKNRKES-----WLKRLTSK 130
Query: 117 GANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVS 150
L L + D G FRL ++V++ L+
Sbjct: 131 LFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 121 bits (306), Expect = 6e-33
Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 6/172 (3%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
+V++PTYNE++ L + +++ +EIIV+DDGS DGT++ A++ ++
Sbjct: 1 SVIIPTYNEEKYLE---ETLESLLNQTYKNFEIIVVDDGSTDGTVEIAEEYAKNDP--RV 55
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
+ ++ LG A GLK ATG++I +DAD P ++ ++++L ++ D+V G+R
Sbjct: 56 RVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSR 115
Query: 323 YVGTGGVYGWDF-KRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373
V G + R + L L V L GS LY+++VLE L
Sbjct: 116 VVINGETRLYGRALRFELLLLLGKLGARSLGLKVLFLIGSNALYRREVLEEL 167
Score = 112 bits (282), Expect = 1e-29
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 65
+EIIV+DDGS DGT++ A++ ++ + ++ LG A GLK ATG++I
Sbjct: 26 KNFEIIVVDDGSTDGTVEIAEEYAKNDP--RVRVIRLEENLGKAAARNAGLKLATGDYIA 83
Query: 66 IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF-KRKLVSRGANYLTQL 124
+DAD P ++ ++++L ++ D+V G+R V G + R + L
Sbjct: 84 FLDADDEVAPDWLEKLVELLEKNGADIVIGSRVVINGETRLYGRALRFELLLLLGKLGAR 143
Query: 125 LLRPGVSDLTGSFRLYKKQVLENL 148
L V L GS LY+++VLE L
Sbjct: 144 SLGLKVLFLIGSNALYRREVLEEL 167
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 94.0 bits (232), Expect = 1e-21
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 21/230 (9%)
Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
K +V++PTYNE+E LP + + + +EIIV+DDGS DGT + A + +
Sbjct: 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYK---DFEIIVVDDGSTDGTTEIAIEYGAKDV 58
Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
+++ ++ GLG A GL+YA G++I+ +DAD H P+ IP + D
Sbjct: 59 --RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLV-----AAGGDGD 111
Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
R ++ + + L LL + D G RL + ++ L +
Sbjct: 112 YIARLDDRDDIWLPRKLLSKLVK---LLGNRLLGVLIPDGFGDLRLLVRDAVDGLRA--F 166
Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKAL 428
+G + +++R + ++ + LG ++ K L
Sbjct: 167 LEGRSRFLRLLLRKLVL------IRREVLEYLLLYRLLGASKRVLLGKLL 210
Score = 75.9 bits (185), Expect = 2e-15
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
+EIIV+DDGS DGT + A + + +++ ++ GLG A GL+YA G++I+
Sbjct: 32 DFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGLGAARNAGLEYARGDYIVF 89
Query: 67 MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL 126
+DAD H P+ IP + D R ++ + + L LL
Sbjct: 90 LDADDQHPPELIPLV-----AAGGDGDYIARLDDRDDIWLPRKLLSKLVK---LLGNRLL 141
Query: 127 RPGVSDLTGSFRLYKKQVLENLVS 150
+ D G RL + ++ L +
Sbjct: 142 GVLIPDGFGDLRLLVRDAVDGLRA 165
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 87.6 bits (217), Expect = 2e-20
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
V++P YNE+ L + + +E+IV+DDGS DGTL+ ++ V
Sbjct: 1 VIIPAYNEEPYLERCLESLLAQ---TYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRV 57
Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVTGT 321
+ ++ GL A GLK A G +I+ +DAD P ++ ++ L D V G
Sbjct: 58 IN--EENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114
Score = 76.8 bits (189), Expect = 1e-16
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
+E+IV+DDGS DGTL+ ++ V+ ++ GL A GLK A G +I+
Sbjct: 26 NFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVIN--EENQGLAAARNAGLKAARGEYILF 83
Query: 67 MDADLSHHPKFIPEMIK-LQQQENLDVVTGT 96
+DAD P ++ ++ L D V G
Sbjct: 84 LDADDLLLPDWLERLVAELLADPEADAVGGP 114
>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
Provisional.
Length = 333
Score = 84.4 bits (209), Expect = 4e-18
Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 14/219 (6%)
Query: 203 TVLLPTYNEKENLPI-----IVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL--QS 255
++++P YNE++ LP I YL ++ + + YEII+++DGS D TL AK Q+
Sbjct: 73 SIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQN 132
Query: 256 IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD----LSHHPKFIPEMIKLQQ 311
I + I L + G G A G+ + G +I+++DAD + K M+K++Q
Sbjct: 133 INPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQ 192
Query: 312 QENLDVVTGTR--YVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQV 369
L +V G+R V + V + R ++ G +++ + + D F+L+ ++
Sbjct: 193 NG-LGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRET 251
Query: 370 LENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 408
+ S + + F +E+V+ A++ N I EVP+++ +
Sbjct: 252 ARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTE 290
Score = 72.9 bits (179), Expect = 3e-14
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 9/189 (4%)
Query: 3 EGNYPYEIIVIDDGSPDGTLDAAKQL--QSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 60
+ + YEII+++DGS D TL AK Q+I + I L + G G A G+ +
Sbjct: 103 DPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASR 162
Query: 61 GNFIIIMDAD----LSHHPKFIPEMIKLQQQENLDVVTGTR--YVGTGGVYGWDFKRKLV 114
G +I+++DAD + K M+K++Q L +V G+R V + V + R ++
Sbjct: 163 GKYILMVDADGATDIDDFDKLEDIMLKIEQNG-LGIVFGSRNHLVDSDVVAKRKWYRNIL 221
Query: 115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI 174
G +++ + + D F+L+ ++ + S + + F +E+V+ A++ N I
Sbjct: 222 MYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPI 281
Query: 175 GEVPISFVD 183
EVP+++ +
Sbjct: 282 AEVPVNWTE 290
>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate
4-deoxy-4-formamido-L-arabinose transferase;
Provisional.
Length = 325
Score = 81.7 bits (202), Expect = 4e-17
Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 14/217 (6%)
Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
K +V++P YNE+E+LP ++ T + YEI++IDDGS D + + + S
Sbjct: 6 KKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDS 65
Query: 260 EKI-VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
+ +L R G +A M G + TG+ II +DADL + P+ IP ++ + E DVV
Sbjct: 66 HIVAILLNRN--YGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVA-KADEGYDVV 122
Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
R + RK S+ N L Q + D R Y++ +++ ++ C
Sbjct: 123 GTVRQNRQDSWF-----RKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAML-HCH 176
Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
+ + AR+ I E+P+ +R +G+SK
Sbjct: 177 ERSTFIPILANTFARR---AI-EIPVHHAEREFGDSK 209
Score = 59.4 bits (144), Expect = 1e-09
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI-VLKPRKKKLGLGTAYMHGLKYATGNFII 65
YEI++IDDGS D + + + S + +L R G +A M G + TG+ II
Sbjct: 38 EYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN--YGQHSAIMAGFSHVTGDLII 95
Query: 66 IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 125
+DADL + P+ IP ++ + E DVV R + RK S+ N L Q
Sbjct: 96 TLDADLQNPPEEIPRLVA-KADEGYDVVGTVRQNRQDSWF-----RKTASKMINRLIQRT 149
Query: 126 LRPGVSDLTGSFRLYKKQVLE 146
+ D R Y++ +++
Sbjct: 150 TGKAMGDYGCMLRAYRRHIVD 170
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae and
lower eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 71.1 bits (175), Expect = 2e-14
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
+++P YNE+ + + + + +YP E+IV+DDGS D TL+ ++L ++Y +
Sbjct: 1 IIVPAYNEEAVIERTI----ESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVL 56
Query: 263 VL--KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVT 319
V+ K K G A GL++A G+ ++++DAD P + ++ + V
Sbjct: 57 VVRDKENGGKAG---ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQ 113
Query: 320 GTRYVGTGGVYGWDFKRKLVSRGAN---YLTQLLLRPGVSDL------TGSFRLYKKQVL 370
G V + L++R L R S L +G+F ++++ L
Sbjct: 114 GRVRVR-------NGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREAL 166
Query: 371 ENL 373
+
Sbjct: 167 REV 169
Score = 62.6 bits (153), Expect = 1e-11
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 23/157 (14%)
Query: 5 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL--KPRKKKLGLGTAYMHGLKYATG 61
+YP E+IV+DDGS D TL+ ++L ++Y +V+ K K G A GL++A G
Sbjct: 23 DYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAG---ALNAGLRHAKG 79
Query: 62 NFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN- 119
+ ++++DAD P + ++ + V G V + L++R
Sbjct: 80 DIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR-------NGSENLLTRLQAI 132
Query: 120 --YLTQLLLRPGVSDL------TGSFRLYKKQVLENL 148
L R S L +G+F ++++ L +
Sbjct: 133 EYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREV 169
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 68.8 bits (168), Expect = 1e-12
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)
Query: 201 KYTVLLPTYNE-KENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYG 258
K +V++P YNE E L + + +YP YE+IV+DDGS D T + ++L + YG
Sbjct: 55 KVSVIIPAYNEEPEVLEETLESLLSQ----DYPRYEVIVVDDGSTDETYEILEELGAEYG 110
Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
V+ P KK G A +GLK A G+ ++I+DAD P + E++ + + V
Sbjct: 111 PNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAV 170
Query: 319 TGTRYVGTGGVY-GWDFKRKLVSRGANYLTQLLLRPGVSD------LTGSFRLYKKQVLE 371
GT + + + + S L+GS +++ LE
Sbjct: 171 VGTPRIRNRPDPSNLLGRIQAIE---YLSAFYFRLRAASKGGLISFLSGSSSAFRRSALE 227
Query: 372 NL 373
+
Sbjct: 228 EV 229
Score = 59.2 bits (143), Expect = 2e-09
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 5 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
+YP YE+IV+DDGS D T + ++L + YG V+ P KK G A +GLK A G+
Sbjct: 81 DYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDV 140
Query: 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-GWDFKRKLVSRGANYLT 122
++I+DAD P + E++ + + V GT + + + +
Sbjct: 141 VVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIE---YLSA 197
Query: 123 QLLLRPGVSD------LTGSFRLYKKQVLENL 148
S L+GS +++ LE +
Sbjct: 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEV 229
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 64.9 bits (159), Expect = 6e-12
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGS 259
++++P NE++ I L+ + +YP EIIV+D GS DGT + ++ +
Sbjct: 3 SIIIPVRNEEKY---IEELLESLL-NQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKD-- 56
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK-FIPEMIKLQQQENLDVV 318
+I L K++ G++ + G+ II +DA + +PK +I E+++ ++ D V
Sbjct: 57 PRIRLIDNPKRI-QSAGLNIGIRNSRGDIIIRVDAH-AVYPKDYILELVEALKRTGADNV 114
Query: 319 TGTRYV----GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL----TGSFRLYKKQVL 370
G L S G+ Y R G + T Y+++V
Sbjct: 115 GGPMETIGESKFQKAIAVAQSSPLGSGGSAY------RGGAVKIGYVDTVHHGAYRREVF 168
Query: 371 ENL 373
E +
Sbjct: 169 EKV 171
Score = 61.1 bits (149), Expect = 1e-10
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
EIIV+D GS DGT + ++ + +I L K++ G++ + G+ II
Sbjct: 31 LIEIIVVDGGSTDGTREIVQEYAAKD--PRIRLIDNPKRI-QSAGLNIGIRNSRGDIIIR 87
Query: 67 MDADLSHHPK-FIPEMIKLQQQENLDVVTGTRYV----GTGGVYGWDFKRKLVSRGANYL 121
+DA + +PK +I E+++ ++ D V G L S G+ Y
Sbjct: 88 VDAH-AVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAY- 145
Query: 122 TQLLLRPGVSDL----TGSFRLYKKQVLENL 148
R G + T Y+++V E +
Sbjct: 146 -----RGGAVKIGYVDTVHHGAYRREVFEKV 171
>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 229
Score = 60.4 bits (147), Expect = 2e-10
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
+ V++PT+NE ++ + + + E+IV+ DGS D TLD A++L + Y
Sbjct: 2 RVAVVVPTWNE---DKVLGRTLRSILAQDYPRLEVIVVVDGSDDETLDVARELAAAYPDV 58
Query: 261 KIVLKPRKKKLGLGT---AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
++ + R + G A L+ + ++++DAD P + ++ + +
Sbjct: 59 RVHVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKGVGA 118
Query: 318 VTGTRYV 324
V G +V
Sbjct: 119 VQGPVFV 125
Score = 55.8 bits (135), Expect = 5e-09
Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 32/200 (16%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT---AYMHGLKYATGNF 63
E+IV+ DGS D TLD A++L + Y ++ + R + G A L+ +
Sbjct: 30 RLEVIVVVDGSDDETLDVARELAAAYPDVRVHVVRRPRPPGPTGKARALNEALRAIKSDL 89
Query: 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG----------VYGWDFKRKL 113
++++DAD P + ++ + + V G +V +
Sbjct: 90 VVLLDADSVVDPDTLRRLLPFFLSKGVGAVQGPVFVLNLRTAVAPLYALEFALRHLRFMA 149
Query: 114 VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL----VSSCVSKGYVFQMEMVIRARQ 169
+ R GV+ L GS L+++ VLE + + + + R R+
Sbjct: 150 LRRAL----------GVAPLAGSGSLFRRSVLEEIGGFDPGFLLGEDKELGL----RLRR 195
Query: 170 YNYTIGEVPISFVDRVVFTT 189
+ VP + V + +
Sbjct: 196 AGWRTAYVPGAAV-YELSPS 214
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 55.4 bits (134), Expect = 8e-09
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 26/146 (17%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGT---LDAA-----KQ 252
V++ NE ENLP ++ ++ +YP +E+I++DD S DGT L+ A Q
Sbjct: 1 VVIAARNEAENLPRLLQSLSAL----DYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQ 56
Query: 253 LQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 312
L+ + S + +K A +K A G++I+ DAD ++ + Q+
Sbjct: 57 LKILNNSRV-SISGKKN------ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQK 109
Query: 313 ENLDVVTGTRYVGTGGVYGWDFKRKL 338
E + +V G G K
Sbjct: 110 EQIGLVAG----PVIYFKGKSLLAKF 131
Score = 48.1 bits (115), Expect = 3e-06
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 5 NYP---YEIIVIDDGSPDGT---LDAA-----KQLQSIYGSEKIVLKPRKKKLGLGTAYM 53
+YP +E+I++DD S DGT L+ A QL+ + S + +K A
Sbjct: 23 DYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRV-SISGKKN------ALT 75
Query: 54 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL 113
+K A G++I+ DAD ++ + Q+E + +V G G K
Sbjct: 76 TAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG----PVIYFKGKSLLAKF 131
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 53.9 bits (130), Expect = 5e-08
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 10/136 (7%)
Query: 196 DSVKNKYTVLLPTYNEKENLP-IIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQ 254
+ K ++++P YN ++ + LI + EII+++DGS D +++ AK
Sbjct: 2 MNSTPKLSIIIPLYNAGKDFRAFMESLIAQTWTA----LEIIIVNDGSTDNSVEIAKHYA 57
Query: 255 SIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQEN 314
Y +++ + G+ A GL ATG ++ DAD +P ++ + +++
Sbjct: 58 ENYPHVRLL---HQANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDD 114
Query: 315 LDVVT--GTRYVGTGG 328
LDV G
Sbjct: 115 LDVAQCNADWCFRDTG 130
Score = 50.0 bits (120), Expect = 1e-06
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
EII+++DGS D +++ AK Y +++ + G+ A GL ATG ++
Sbjct: 36 LEIIIVNDGSTDNSVEIAKHYAENYPHVRLL---HQANAGVSVARNTGLAVATGKYVAFP 92
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVT--GTRYVGTGG 103
DAD +P ++ + +++LDV G
Sbjct: 93 DADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTG 130
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 53.4 bits (129), Expect = 6e-08
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)
Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIY 257
T+++P YNE+ I L +YP EIIV+ DGS DGT + A++ Y
Sbjct: 30 TVTIIIPAYNEEAV--IEAKLENLLAL--DYPRDRLEIIVVSDGSTDGTAEIARE----Y 81
Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
+ + L ++ G A L ATG ++ DA+ P + +++ ++
Sbjct: 82 ADKGVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGA 141
Query: 318 VTGT-RYVGTGGV 329
V+G V GG
Sbjct: 142 VSGELVIVDGGGS 154
Score = 46.4 bits (111), Expect = 9e-06
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 5 NYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG 61
+YP EIIV+ DGS DGT + A++ Y + + L ++ G A L ATG
Sbjct: 55 DYPRDRLEIIVVSDGSTDGTAEIARE----YADKGVKLLRFPERRGKAAALNRALALATG 110
Query: 62 NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYVGTGGV 104
++ DA+ P + +++ ++ V+G V GG
Sbjct: 111 EIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGS 154
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 53.2 bits (128), Expect = 7e-08
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 5/114 (4%)
Query: 203 TVLLPTYNEKENLPII--VYLITKYMDEGNYPY--EIIVIDDGSPDGTL-DAAKQLQSIY 257
+V++P Y I+ + + EIIV+D SP + K +
Sbjct: 1 SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSFAKELKKIIAKNG 60
Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311
I K K A G +Y++ +FI +D D P + ++IK Q
Sbjct: 61 AINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDCLISPDTLEKIIKHFQ 114
Score = 49.3 bits (118), Expect = 1e-06
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 9 EIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
EIIV+D SP + K + I K K A G +Y++ +FI +
Sbjct: 36 EIIVVDGDSPLSFAKELKKIIAKNGAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFL 95
Query: 68 DADLSHHPKFIPEMIKLQQ 86
D D P + ++IK Q
Sbjct: 96 DVDCLISPDTLEKIIKHFQ 114
>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family.
Members of this family are glycosyltransferases
restricted to the archaea. All but two members are from
species with the PGF-CTERM/archaeosortase A system, a
proposed maturation system for exported, glycosylated
proteins as are found often in S-layers.
Length = 293
Score = 53.1 bits (128), Expect = 8e-08
Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 33/237 (13%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
VL+PT NE I +I + + G +I+VID S DGT + AK+ + ++
Sbjct: 3 CVLIPTLNEA---ATIGDVIDGFQELGYS--DILVIDGNSTDGTQEIAKEAGA-----RV 52
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
V++ K K G A + +++++D D ++ P +++ D V G R
Sbjct: 53 VIQSGKGK---GQAVREAFELIDAPYVLMLDGDGTYLPADADALLEPLLSGRADHVIGNR 109
Query: 323 YVGTGGVYGWDFKRKLVSRGANYLTQLLLR--PGV--SDLTGSFRLYKKQVLENLVSSCV 378
+ F R ++ N L L R GV D+ +R + ++ + + +
Sbjct: 110 FADMEPG---AFTR--LNLVGNRLINRLFRIIHGVDLRDILSGYRAFTRESIRRMELT-- 162
Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG-ESKLG--------GTEIFQFAK 426
G+ + E+ + + N + VPI++ R G ++KL G I++ AK
Sbjct: 163 ETGFEIETEIAVECVKKNLRVEVVPITYRARPGGSDTKLNPLRDGFKIGLTIYRLAK 219
Score = 40.0 bits (94), Expect = 0.002
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
+I+VID S DGT + AK+ + ++V++ K K G A + +++++
Sbjct: 28 SDILVIDGNSTDGTQEIAKEAGA-----RVVIQSGKGK---GQAVREAFELIDAPYVLML 79
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
D D ++ P +++ D V G R+ F R ++ N L L R
Sbjct: 80 DGDGTYLPADADALLEPLLSGRADHVIGNRFADMEPG---AFTR--LNLVGNRLINRLFR 134
Query: 128 --PGV--SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 183
GV D+ +R + ++ + + + G+ + E+ + + N + VPI++
Sbjct: 135 IIHGVDLRDILSGYRAFTRESIRRMELT--ETGFEIETEIAVECVKKNLRVEVVPITYRA 192
Query: 184 R 184
R
Sbjct: 193 R 193
>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional.
Length = 420
Score = 52.2 bits (126), Expect = 2e-07
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
++L+P YNE EN+ I +L+ YP YE+I I+DGS D T + +L +
Sbjct: 57 SILVPCYNEGENVEETISHLLAL-----RYPNYEVIAINDGSSDNTGEILDRLAAQI--P 109
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
++ + + G A G A +++ +D D P M++ + VT
Sbjct: 110 RLRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVT 169
Query: 320 G 320
G
Sbjct: 170 G 170
Score = 43.4 bits (103), Expect = 1e-04
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 5 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
YP YE+I I+DGS D T + +L + ++ + + G A G A +
Sbjct: 80 RYPNYEVIAINDGSSDNTGEILDRLAAQI--PRLRVIHLAENQGKANALNTGAAAARSEY 137
Query: 64 IIIMDADLSHHPKFIPEMIK-LQQQENLDVVTG 95
++ +D D P M++ + VTG
Sbjct: 138 LVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTG 170
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 51.3 bits (123), Expect = 4e-07
Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 35/234 (14%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
++++ TYN E+L + L + I+V+D+GS DG+L+A K +
Sbjct: 6 SIIIVTYNRGEDL--VECLASLAAQT-YPDDVIVVVDNGSTDGSLEALK----ARFFPNV 58
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
L + LG + G+KYA ++++++ D P + E++K +++ V
Sbjct: 59 RLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118
Query: 320 GTRYVGTGG---VYGWDFKRKLVSRGANYLTQLLLRP-------GVSDLTGSFRLYKKQV 369
G + + ++ G L + P V+ L+G+ L +++
Sbjct: 119 GPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREA 178
Query: 370 LENLVSSCVSKG--------YVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
E + G Y +++ +RAR+ Y I VP + + G SK
Sbjct: 179 FEKV-------GGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225
Score = 44.4 bits (105), Expect = 5e-05
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 32/197 (16%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---F 63
I+V+D+GS DG+L+A K + L + LG + G+KYA +
Sbjct: 32 DDVIVVVDNGSTDGSLEALK----ARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDY 87
Query: 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG---VYGWDFKRKLVSRGANY 120
+++++ D P + E++K +++ V G + + ++ G
Sbjct: 88 VLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRA 147
Query: 121 LTQLLLRP-------GVSDLTGSFRLYKKQVLENLVSSCVSKG--------YVFQMEMVI 165
L + P V+ L+G+ L +++ E + G Y +++ +
Sbjct: 148 SPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV-------GGFDERFFIYYEDVDLCL 200
Query: 166 RARQYNYTIGEVPISFV 182
RAR+ Y I VP + +
Sbjct: 201 RARKAGYKIYYVPDAII 217
>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine
synthase. Members of this protein family are
biofilm-forming enzymes that polymerize
N-acetyl-D-glucosamine residues in beta(1,6) linkage.
One named members is IcaA (intercellular adhesin protein
A), an enzyme that acts (with aid of subunit IcaD) in
Polysaccharide Intercellular Adhesin (PIA) biosynthesis
in Staphylococcus epidermis). The homologous member in
E. coli is designated PgaC. Members are often encoded
next to a polysaccharide deacetylase and involved in
biofilm formation. Note that chitin, although also made
from N-acetylglucosamine, is formed with beta-1,4
linkages.
Length = 407
Score = 50.7 bits (122), Expect = 8e-07
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query: 203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
++L+P YNE N+ I +L+ YP +EII I+DGS D T + +L +
Sbjct: 48 SILVPCYNEGANVEETISHLLAL-----RYPNFEIIAINDGSKDNTAEILDRLAAQD--P 100
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
++ + + G A GL A +++ +D D P M++ + VT
Sbjct: 101 RLRVIHLAENQGKANALNTGLLAAKYEYLVCIDGDALLDPDAAYWMVEHFLSNPRVGAVT 160
Query: 320 G 320
G
Sbjct: 161 G 161
Score = 41.1 bits (97), Expect = 8e-04
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 5 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
YP +EII I+DGS D T + +L + ++ + + G A GL A +
Sbjct: 71 RYPNFEIIAINDGSKDNTAEILDRLAAQD--PRLRVIHLAENQGKANALNTGLLAAKYEY 128
Query: 64 IIIMDADLSHHPKFIPEMIK-LQQQENLDVVTG 95
++ +D D P M++ + VTG
Sbjct: 129 LVCIDGDALLDPDAAYWMVEHFLSNPRVGAVTG 161
>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase;
Provisional.
Length = 306
Score = 50.3 bits (121), Expect = 8e-07
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL-QSIYGSEK 261
+V+LP NE+E + +V I + E E+IVID GS D T + A + E+
Sbjct: 34 SVVLPALNEEETVGKVVDSIRPLLMEPL-VDELIVIDSGSTDATAERAAAAGARVVSREE 92
Query: 262 IV--LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIP 304
I+ L PR K G A L TG+ ++ +DADL + P F+P
Sbjct: 93 ILPELPPRPGK---GEALWRSLAATTGDIVVFVDADLINFDPMFVP 135
Score = 41.4 bits (98), Expect = 6e-04
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 9 EIIVIDDGSPDGTLDAAKQL-QSIYGSEKIV--LKPRKKKLGLGTAYMHGLKYATGNFII 65
E+IVID GS D T + A + E+I+ L PR K G A L TG+ ++
Sbjct: 64 ELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGK---GEALWRSLAATTGDIVV 120
Query: 66 IMDADL-SHHPKFIP 79
+DADL + P F+P
Sbjct: 121 FVDADLINFDPMFVP 135
>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the
elongation of the glucan chain of cellulose. Family of
proteins related to Agrobacterium tumefaciens CelA and
Gluconacetobacter xylinus BscA. These proteins are
involved in the elongation of the glucan chain of
cellulose, an aggregate of unbranched polymers of
beta-1,4-linked glucose residues. They are putative
catalytic subunit of cellulose synthase, which is a
glycosyltransferase using UDP-glucose as the substrate.
The catalytic subunit is an integral membrane protein
with 6 transmembrane segments and it is postulated that
the protein is anchored in the membrane at the
N-terminal end.
Length = 234
Score = 49.1 bits (118), Expect = 1e-06
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
V +PTYNE + +D YP + V+DDG A +L YG
Sbjct: 5 VFIPTYNEPLEIVRKTLRAALAID---YPHDKLRVYVLDDGRRPELRALAAELGVEYGYR 61
Query: 261 KIV-LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPE 305
+ R K G + L + TG+F+ I+DAD +P
Sbjct: 62 YLTRPDNRHAKAG---NLNNALAHTTGDFVAILDAD------HVPT 98
Score = 41.4 bits (98), Expect = 4e-04
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)
Query: 5 NYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV-LKPRKKKLGLGTAYMHGLKYAT 60
+YP + V+DDG A +L YG + R K G + L + T
Sbjct: 28 DYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAG---NLNNALAHTT 84
Query: 61 GNFIIIMDADLSHHPKFIPE 80
G+F+ I+DAD +P
Sbjct: 85 GDFVAILDAD------HVPT 98
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 48.3 bits (116), Expect = 1e-06
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
+++ TYN E L +++ +++ P+E+I+ DDGS + T + ++ +S I
Sbjct: 1 LIITTYNRPEALELVL---KSVLNQSILPFEVIIADDGSTEETKELIEEFKS---QFPIP 54
Query: 264 LKP-RKKKLG--LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 309
+K ++ G + A G+++I +D D HP FI + I+L
Sbjct: 55 IKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIEL 103
Score = 40.3 bits (95), Expect = 6e-04
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP-RKKKLG--LGTAYMHGLKYATGN 62
P+E+I+ DDGS + T + ++ +S I +K ++ G + A G+
Sbjct: 25 LPFEVIIADDGSTEETKELIEEFKS---QFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD 81
Query: 63 FIIIMDADLSHHPKFIPEMIKL 84
++I +D D HP FI + I+L
Sbjct: 82 YLIFIDGDCIPHPDFIADHIEL 103
>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4
glucosyltransferase is required for biosynthesis of
lipooligosaccharide. UDP-glucose: lipooligosaccharide
(LOS) beta-1-4-glucosyltransferase catalyzes the
addition of the first residue, glucose, of the
lacto-N-neotetrase structure to HepI of the LOS inner
core. LOS is the major constituent of the outer leaflet
of the outer membrane of gram-positive bacteria. It
consists of a short oligosaccharide chain of variable
composition (alpha chain) attached to a branched inner
core which is lined in turn to lipid A. Beta 1,4
glucosyltransferase is required to attach the alpha
chain to the inner core.
Length = 229
Score = 46.9 bits (112), Expect = 6e-06
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 20/96 (20%)
Query: 203 TVLLPTYNEKENLP-II--VYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
+V++ T NE+ N+ + V EIIV+D GS D T++ AK+ YG+
Sbjct: 3 SVVIITKNEERNIERCLESVKWAVD---------EIIVVDSGSTDRTVEIAKE----YGA 49
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
K+ ++ G G L+ AT ++++ +DAD
Sbjct: 50 -KVY---QRWWDGFGAQRNFALELATNDWVLSLDAD 81
Score = 44.2 bits (105), Expect = 5e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
EIIV+D GS D T++ AK+ YG+ K+ ++ G G L+ AT ++++ +D
Sbjct: 28 EIIVVDSGSTDRTVEIAKE----YGA-KVY---QRWWDGFGAQRNFALELATNDWVLSLD 79
Query: 69 AD 70
AD
Sbjct: 80 AD 81
>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This
family of genes include a glycosyl transferase, group 2
domain (pfam00535) which are responsible, generally for
the transfer of nucleotide-diphosphate sugars to
substrates such as polysaccharides and lipids. The genes
of this family are often found in the same genetic locus
with squalene-hopene cyclase genes, and are never
associated with genes for the metabolism of phytoene.
Indeed, the members of this family appear to never be
found in a genome lacking squalene-hopene cyclase (SHC),
although not all genomes encoding SHC have this glycosyl
transferase. In the organism Zymomonas mobilis the
linkage of this gene to hopanoid biosynthesis has been
noted and the gene named HpnB. Hopanoids are known to
feature polar glycosyl head groups in many organisms.
Length = 384
Score = 47.4 bits (113), Expect = 8e-06
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 5 NYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEK--IVL--KPRKK----KL-----GLG 49
+YP +I++DD S DGT D A+ YG V+ +P KL G+
Sbjct: 66 DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIA 125
Query: 50 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94
A +++++ DAD++H P + ++ + E LD+V+
Sbjct: 126 AA---RTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167
Score = 47.4 bits (113), Expect = 8e-06
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 230 NYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEK--IVL--KPRKK----KL-----GLG 274
+YP +I++DD S DGT D A+ YG V+ +P KL G+
Sbjct: 66 DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIA 125
Query: 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
A +++++ DAD++H P + ++ + E LD+V+
Sbjct: 126 AA---RTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 45.6 bits (109), Expect = 1e-05
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
++++P NE LP ++ + + E+IV+D GS DGT++ A+ L K+
Sbjct: 2 SIIIPVLNEAATLPELLADLQALPGDA----EVIVVDGGSTDGTVEIARSL-----GAKV 52
Query: 263 VLKPRKKKLGLGTAY-M-HGLKYATGNFIIIMDAD 295
+ P+ G A M G A G+ ++ + AD
Sbjct: 53 IHSPK------GRARQMNAGAALAKGDILLFLHAD 81
Score = 36.7 bits (86), Expect = 0.014
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY-M-HGLKYATGNF 63
E+IV+D GS DGT++ A+ L K++ P+ G A M G A G+
Sbjct: 26 GDAEVIVVDGGSTDGTVEIARSL-----GAKVIHSPK------GRARQMNAGAALAKGDI 74
Query: 64 IIIMDAD 70
++ + AD
Sbjct: 75 LLFLHAD 81
>gnl|CDD|133059 cd06437, CESA_CaSu_A2, Cellulose synthase catalytic subunit A2
(CESA2) is a catalytic subunit or a catalytic subunit
substitute of the cellulose synthase complex. Cellulose
synthase (CESA) catalyzes the polymerization reaction of
cellulose using UDP-glucose as the substrate. Cellulose
is an aggregate of unbranched polymers of
beta-1,4-linked glucose residues, which is an abundant
polysaccharide produced by plants and in varying degrees
by several other organisms including algae, bacteria,
fungi, and even some animals. Genomes from higher plants
harbor multiple CESA genes. There are ten in
Arabidopsis. At least three different CESA proteins are
required to form a functional complex. In Arabidopsis,
CESA1, 3 and 6 and CESA4, 7 and 8, are required for
cellulose biosynthesis during primary and secondary cell
wall formation. CESA2 is very closely related to CESA6
and is viewed as a prime substitute for CESA6. They
functionally compensate each other. The cesa2 and cesa6
double mutant plants were significantly smaller, while
the single mutant plants were almost normal.
Length = 232
Score = 45.4 bits (108), Expect = 2e-05
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 35/158 (22%)
Query: 203 TVLLPTYNEKENLPIIVYLI--TKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIY 257
TV LP +NEK ++ LI +D YP EI V+DD S D T+ A+++ Y
Sbjct: 4 TVQLPVFNEKY---VVERLIEAACALD---YPKDRLEIQVLDD-STDETVRLAREIVEEY 56
Query: 258 GSEKIVLKPRKK------KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311
++ + +K ++ K G A G+K A G ++ I DAD P F+ +
Sbjct: 57 AAQGVNIKHVRRADRTGYKAG---ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA 113
Query: 312 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 349
L V W ++ + LT++
Sbjct: 114 DPKLGFVQT----------RWGH----INANYSLLTRV 137
Score = 35.7 bits (83), Expect = 0.028
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 24/122 (19%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK------KLGLGTAYMHGLKYATGN 62
EI V+DD S D T+ A+++ Y ++ + +K ++ K G A G+K A G
Sbjct: 34 EIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAG---ALAEGMKVAKGE 89
Query: 63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT 122
++ I DAD P F+ + L V W ++ + LT
Sbjct: 90 YVAIFDADFVPPPDFLQKTPPYFADPKLGFVQT----------RWGH----INANYSLLT 135
Query: 123 QL 124
++
Sbjct: 136 RV 137
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 16/96 (16%)
Query: 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
++++PT NE ENLP L+ P EIIV+D GS DGT+ A+
Sbjct: 1 LSIIIPTLNEAENLPR---LLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA------GV 51
Query: 262 IVLKPRKKKLGLGTAY-M-HGLKYATGNFIIIMDAD 295
+V+ K G A M G A G++++ + AD
Sbjct: 52 VVISSPK-----GRARQMNAGAAAARGDWLLFLHAD 82
Score = 33.3 bits (77), Expect = 0.15
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 13/67 (19%)
Query: 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY-M-HGLKYATGNF 63
P EIIV+D GS DGT+ A+ +V+ K G A M G A G++
Sbjct: 27 LPLEIIVVDGGSTDGTVAIARSA------GVVVISSPK-----GRARQMNAGAAAARGDW 75
Query: 64 IIIMDAD 70
++ + AD
Sbjct: 76 LLFLHAD 82
>gnl|CDD|133049 cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose
synthase superfamily. The cellulose synthase (CESA)
superfamily includes a wide variety of
glycosyltransferase family 2 enzymes that share the
common characteristic of catalyzing the elongation of
polysaccharide chains. The members include cellulose
synthase catalytic subunit, chitin synthase, Glucan
Biosynthesis protein and other families of CESA-like
proteins. Cellulose synthase catalyzes the
polymerization reaction of cellulose, an aggregate of
unbranched polymers of beta-1,4-linked glucose residues
in plants, most algae, some bacteria and fungi, and
even some animals. In bacteria, algae and lower
eukaryotes, there is a second unrelated type of
cellulose synthase (Type II), which produces acylated
cellulose, a derivative of cellulose. Chitin synthase
catalyzes the incorporation of GlcNAc from substrate
UDP-GlcNAc into chitin, which is a linear homopolymer of
beta-(1,4)-linked GlcNAc residues and Glucan
Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of glucan.
Length = 241
Score = 44.6 bits (106), Expect = 4e-05
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYE----IIVIDDGSPDGTLDAAKQLQSIY 257
YT+L+P Y E E LP ++ + +YP +++++ + T+ AA+ L+
Sbjct: 3 YTILVPLYKEAEVLPQLI----ASLSALDYPRSKLDVKLLLEEDDEE-TIAAARALRLPS 57
Query: 258 GSEKIVL---KPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
+V+ +PR K A + L +A G +++I DA+
Sbjct: 58 IFRVVVVPPSQPRTKP----KACNYALAFARGEYVVIYDAE 94
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 42.5 bits (101), Expect = 8e-05
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
+E+IV+D+ S DG+++ ++L ++ L + LG G G++ A G+++++
Sbjct: 26 DFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGIREAKGDYVLL 80
Query: 67 MDADLSHHPKFIPEMIKLQQQ 87
++ D P + E++ +Q
Sbjct: 81 LNPDTVVEPGALLELLDAAEQ 101
Score = 42.5 bits (101), Expect = 8e-05
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291
+E+IV+D+ S DG+++ ++L ++ L + LG G G++ A G+++++
Sbjct: 26 DFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGIREAKGDYVLL 80
Query: 292 MDADLSHHPKFIPEMIKLQQQ 312
++ D P + E++ +Q
Sbjct: 81 LNPDTVVEPGALLELLDAAEQ 101
>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl
transferase. Shigella flexneri RfbF protein is a
putative dTDP-rhamnosyl transferase. dTDP rhamnosyl
transferases of Shigella flexneri add rhamnose sugars
to N-acetyl-glucosamine in the O-antigen tetrasaccharide
repeat. Lipopolysaccharide O antigens are important
virulence determinants for many bacteria. The variations
of sugar composition, the sequence of the sugars and the
linkages in the O antigen provide structural diversity
of the O antigen.
Length = 237
Score = 43.4 bits (103), Expect = 8e-05
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FII 65
+++V+D+ S +L+ SEKI L + LG+ A G+K A N +++
Sbjct: 26 KVVVVDNSS-----GNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL 80
Query: 66 IMDADLSHHPKFIPEMIKLQQQE 88
+ D D P + +++ +
Sbjct: 81 LFDQDSVPPPDMVEKLLAYKILS 103
Score = 43.4 bits (103), Expect = 8e-05
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FII 290
+++V+D+ S +L+ SEKI L + LG+ A G+K A N +++
Sbjct: 26 KVVVVDNSS-----GNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL 80
Query: 291 IMDADLSHHPKFIPEMIKLQQQE 313
+ D D P + +++ +
Sbjct: 81 LFDQDSVPPPDMVEKLLAYKILS 103
>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen
biosynthesis. Escherichia coli WfgS and Shigella
dysenteriae WfeV are glycosyltransferase 2 family
enzymes involved in O-antigen biosynthesis. GT-2 enzymes
have GT-A type structural fold, which has two tightly
associated beta/alpha/beta domains that tend to form a
continuous central sheet of at least eight beta-strands.
These are enzymes that catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds.
Glycosyltransferases have been classified into more than
90 distinct sequence based families.
Length = 202
Score = 41.8 bits (99), Expect = 2e-04
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 17/190 (8%)
Query: 230 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 288
YP E IVID GS DGT+D K+ + + +P K G+ A G+ ATG+
Sbjct: 24 TYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWISEPDK---GIYDAMNKGIALATGDI 78
Query: 289 IIIMDA-DLSHHPKFIPEMIKLQQQENLDVVTG-TRYVGTGGVYGWDFKRKLVSRGANYL 346
I +++ D + + + +DVV G V G + R +L
Sbjct: 79 IGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENG------RVIGRRRPPPFL 132
Query: 347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF 406
+ LL +F +++ + E S ++++R +P
Sbjct: 133 DKFLLYGMPICHQATF--FRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVL 190
Query: 407 VD-RVYGESK 415
R+ G S
Sbjct: 191 AAFRLGGVSS 200
Score = 41.0 bits (97), Expect = 5e-04
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 5 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
YP E IVID GS DGT+D K+ + + +P K G+ A G+ ATG+
Sbjct: 24 TYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWISEPDK---GIYDAMNKGIALATGDI 78
Query: 64 IIIMDA-DLSHHPKFIPEMIKLQQQENLDVVTG-TRYVGTGGVYGW 107
I +++ D + + + +DVV G V G
Sbjct: 79 IGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIG 124
>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 214
Score = 41.8 bits (99), Expect = 2e-04
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 203 TVLLPTYN-EKENLPIIVYLITKYMDE--------GNYPYEIIVIDDGSPDGTLDAAKQL 253
VL+ TYN EK Y+ E E+I+ DDGS DGT++ K+
Sbjct: 1 AVLMATYNGEK------------YLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEY 48
Query: 254 QSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
I+L K LG+ + L+ A G+++ D D
Sbjct: 49 IDKD-PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQD 89
Score = 40.3 bits (95), Expect = 7e-04
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
E+I+ DDGS DGT++ K+ I+L K LG+ + L+ A G+++ D
Sbjct: 29 ELIISDDGSTDGTVEIIKEYIDKD-PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87
Query: 69 AD 70
D
Sbjct: 88 QD 89
>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit
(UDP-forming). Cellulose synthase catalyzes the
beta-1,4 polymerization of glucose residues in the
formation of cellulose. In bacteria, the substrate is
UDP-glucose. The synthase consists of two subunits (or
domains in the frequent cases where it is encoded as a
single polypeptide), the catalytic domain modelled here
and the regulatory domain (pfam03170). The regulatory
domain binds the allosteric activator cyclic di-GMP. The
protein is membrane-associated and probably assembles
into multimers such that the individual cellulose
strands can self-assemble into multi-strand fibrils.
Length = 713
Score = 42.7 bits (101), Expect = 3e-04
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYE---IIVIDDGSPDGTLDAAKQLQSIYGSE 260
V +PTYNE + L K MD YP + + ++DDG D + Q+
Sbjct: 135 VFIPTYNEDLEIVATTVLAAKNMD---YPADKFRVWILDDGGTDQKRNDPDPEQAEAAQR 191
Query: 261 KIVLKPRKKKLGLGTAYM--------------HGLKYATGNFIIIMDADLSHHP 300
+ LK +KLG+ Y+ + LK+ G I+I DAD H P
Sbjct: 192 REELKEFCRKLGVN--YITRPRNVHAKAGNINNALKHTDGELILIFDAD--HVP 241
Score = 29.2 bits (66), Expect = 4.4
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 6 YPYE---IIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM--------- 53
YP + + ++DDG D + Q+ + LK +KLG+ Y+
Sbjct: 159 YPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVN--YITRPRNVHAK 216
Query: 54 -----HGLKYATGNFIIIMDADLSHHP 75
+ LK+ G I+I DAD H P
Sbjct: 217 AGNINNALKHTDGELILIFDAD--HVP 241
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 41.5 bits (98), Expect = 4e-04
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
TV++P Y+E ++ L + P EIIV+ DG L I
Sbjct: 3 TVIIPVYDEDPDVFREC-LRSIL---RQKPLEIIVVTDGD---DEPYLSILSQTVKYGGI 55
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 308
+ G A G+++ T + ++++D+D P +PEM+K
Sbjct: 56 FVITVPHP-GKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100
Score = 35.7 bits (83), Expect = 0.030
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
P EIIV+ DG L I + G A G+++ T + +
Sbjct: 26 QKPLEIIVVTDGD---DEPYLSILSQTVKYGGIFVITVPHP-GKRRALAEGIRHVTTDIV 81
Query: 65 IIMDADLSHHPKFIPEMIK 83
+++D+D P +PEM+K
Sbjct: 82 VLLDSDTVWPPNALPEMLK 100
>gnl|CDD|133028 cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 202
Score = 38.8 bits (91), Expect = 0.002
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NF 63
P IIVID+ S DGT + L S+ + IV + LG + G++ A G ++
Sbjct: 26 PDHIIVIDNASTDGTAEW---LTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDW 82
Query: 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 116
I +MD D P + +++ ++N + G G R++V +
Sbjct: 83 IWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDGSFVGVLISRRVVEK 135
Score = 38.8 bits (91), Expect = 0.002
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NF 288
P IIVID+ S DGT + L S+ + IV + LG + G++ A G ++
Sbjct: 26 PDHIIVIDNASTDGTAEW---LTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDW 82
Query: 289 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 341
I +MD D P + +++ ++N + G G R++V +
Sbjct: 83 IWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDGSFVGVLISRRVVEK 135
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 39.7 bits (93), Expect = 0.002
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
E+IV+DDGS D A + + +++ PR + G A G + A F+ D
Sbjct: 107 EVIVVDDGSEDPVPTRAARGARL--PVRVIRHPR--RQGPAAARNAGARAARTEFVAFTD 162
Query: 69 ADLSHHPKFIPEMI 82
+D+ P ++ ++
Sbjct: 163 SDVVPRPGWLRALL 176
Score = 39.7 bits (93), Expect = 0.002
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 293
E+IV+DDGS D A + + +++ PR + G A G + A F+ D
Sbjct: 107 EVIVVDDGSEDPVPTRAARGARL--PVRVIRHPR--RQGPAAARNAGARAARTEFVAFTD 162
Query: 294 ADLSHHPKFIPEMI 307
+D+ P ++ ++
Sbjct: 163 SDVVPRPGWLRALL 176
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest
of all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity
for glycosylation sites on acceptor proteins.
Length = 299
Score = 38.7 bits (91), Expect = 0.003
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
EII++DD S L + K+ + KK+ GL A + G + ATG+ ++ +D
Sbjct: 32 EIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLD 91
Query: 69 A 69
+
Sbjct: 92 S 92
Score = 38.7 bits (91), Expect = 0.003
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 293
EII++DD S L + K+ + KK+ GL A + G + ATG+ ++ +D
Sbjct: 32 EIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLD 91
Query: 294 A 294
+
Sbjct: 92 S 92
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 35.3 bits (81), Expect = 0.063
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%)
Query: 203 TVLLPTYNEKENL--PIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
++L+P +NE N I L Y + E+I I+DGS D T L +
Sbjct: 78 SILVPCFNEGLNARETIHAALAQTYTN-----IEVIAINDGSSDDTAQVLDALLAEDPRL 132
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
+++ G A G A +++ +D D +P ++ L VT
Sbjct: 133 RVI--HLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVT 190
Query: 320 GTRYVGT 326
G + T
Sbjct: 191 GNPRIRT 197
Score = 30.0 bits (67), Expect = 3.0
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
E+I I+DGS D T L + +++ G A G A +++ +D
Sbjct: 106 EVIAINDGSSDDTAQVLDALLAEDPRLRVI--HLAHNQGKAIALRMGAAAARSEYLVCID 163
Query: 69 ADLSHHPKFIPEMIK-LQQQENLDVVTGTRYVGT 101
D +P ++ L VTG + T
Sbjct: 164 GDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRT 197
>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase,
exosortase G-associated. Members of this protein family
are probable glycosyltransferases of family 2, whose
genes are near those for the exosortase homolog XrtG
(TIGR03110), which is restricted to Gram-positive
bacteria. Other genes in the conserved gene neighborhood
include a 6-pyruvoyl tetrahydropterin synthase homolog
(TIGR03112) and an uncharacterized intergral membrane
protein (TIGR03766).
Length = 439
Score = 34.7 bits (80), Expect = 0.097
Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYE---IIVIDDGSPDGTLDAAKQLQSIYGS 259
T+++P YN ++ L + + + YP E II+ ++ S D + + Q+ +
Sbjct: 52 TIIIPVYNSEDTLFNCI----ESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEF-- 105
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI-KLQQQENLDVV 318
+ L+ G A + + G +II +D+D H I M+ + + ++ +
Sbjct: 106 PGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAM 165
Query: 319 TGT 321
TG
Sbjct: 166 TGV 168
Score = 29.3 bits (66), Expect = 4.3
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 1 MDEGNYPYE---IIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK 57
+ YP E II+ ++ S D + + Q+ + + L+ G A +
Sbjct: 71 IYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEF--PGLSLRYMNSDQGKAKALNAAIY 128
Query: 58 YATGNFIIIMDADLSHHPKFIPEMI-KLQQQENLDVVTGT 96
+ G +II +D+D H I M+ + + ++ +TG
Sbjct: 129 NSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGV 168
>gnl|CDD|222329 pfam13704, Glyco_tranf_2_4, Glycosyl transferase family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferases,.
Length = 97
Score = 32.2 bits (74), Expect = 0.10
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMHGL--KYATGNFI 64
+++D+ S DGT + L + V++ + +++ L +YA G+++
Sbjct: 21 HFLIVDNDSDDGTAEILAALPDV-----GVIRTDLSYRDARRQVDWLNALIRRYADGDWV 75
Query: 65 IIMDAD 70
+++DAD
Sbjct: 76 LVLDAD 81
Score = 32.2 bits (74), Expect = 0.10
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMHGL--KYATGNFI 289
+++D+ S DGT + L + V++ + +++ L +YA G+++
Sbjct: 21 HFLIVDNDSDDGTAEILAALPDV-----GVIRTDLSYRDARRQVDWLNALIRRYADGDWV 75
Query: 290 IIMDAD 295
+++DAD
Sbjct: 76 LVLDAD 81
>gnl|CDD|133012 cd02520, Glucosylceramide_synthase, Glucosylceramide synthase
catalyzes the first glycosylation step of
glycosphingolipid synthesis.
UDP-glucose:N-acylsphingosine D-glucosyltransferase
(glucosylceramide synthase or ceramide
glucosyltransferase) catalyzes the first glycosylation
step of glycosphingolipid synthesis. Its product,
glucosylceramide, serves as the core of more than 300
glycosphingolipids (GSL). GSLs are a group of membrane
components that have the lipid portion embedded in the
outer plasma membrane leaflet and the sugar chains
extended to the outer environment. Several lines of
evidence suggest the importance of GSLs in various
cellular processes such as differentiation, adhesion,
proliferation, and cell-cell recognition. In pathogenic
fungus Cryptococcus neoformans, glucosylceramide serves
as an antigen that elicits an antibody response in
patients and it is essential for fungal growth in host
extracellular environment.
Length = 196
Score = 33.7 bits (78), Expect = 0.12
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 5 NYP-YEII-VIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-------LGTAYMHG 55
+YP YEI+ + D D + ++L + Y + L +K+G L Y
Sbjct: 27 DYPKYEILFCVQDED-DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEE- 84
Query: 56 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 95
A + ++I D+D+S P ++ M+ + +VT
Sbjct: 85 ---ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTC 121
Score = 33.7 bits (78), Expect = 0.12
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 230 NYP-YEII-VIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-------LGTAYMHG 280
+YP YEI+ + D D + ++L + Y + L +K+G L Y
Sbjct: 27 DYPKYEILFCVQDED-DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEE- 84
Query: 281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
A + ++I D+D+S P ++ M+ + +VT
Sbjct: 85 ---ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTC 121
>gnl|CDD|133060 cd06438, EpsO_like, EpsO protein participates in the methanolan
synthesis. The Methylobacillus sp EpsO protein is
predicted to participate in the methanolan synthesis.
Methanolan is an exopolysaccharide (EPS), composed of
glucose, mannose and galactose. A 21 genes cluster was
predicted to participate in the methanolan synthesis.
Gene disruption analysis revealed that EpsO is one of
the glycosyltransferase enzymes involved in the
synthesis of repeating sugar units onto the lipid
carrier.
Length = 183
Score = 33.0 bits (76), Expect = 0.19
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 24/130 (18%)
Query: 204 VLLPTYNEKENLPIIVYLIT--KYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
+L+P +NE+ +I + K D Y I V+ D D T A+ +
Sbjct: 1 ILIPAHNEEA---VIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA------AGA 51
Query: 262 IVLK---PRKKKLGLGTAYMHGLKYATG-----NFIIIMDADLSHHPKFIPEM-IKLQQQ 312
VL+ P ++ G G A G ++ + +++ DAD P + E+ +
Sbjct: 52 TVLERHDPERR--GKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG 109
Query: 313 ENLDVVTGTR 322
VV
Sbjct: 110 A--RVVQAYY 117
Score = 31.8 bits (73), Expect = 0.43
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 22/105 (20%)
Query: 5 NYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK---PRKKKLGLGTAYMHGLKY 58
+YP Y I V+ D D T A+ + VL+ P ++ G G A G ++
Sbjct: 23 DYPRELYRIFVVADNCTDDTAQVARA------AGATVLERHDPERR--GKGYALDFGFRH 74
Query: 59 ATG-----NFIIIMDADLSHHPKFIPEM-IKLQQQENLDVVTGTR 97
+ +++ DAD P + E+ + VV
Sbjct: 75 LLNLADDPDAVVVFDADNLVDPNALEELNARFAAGA--RVVQAYY 117
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 33.1 bits (76), Expect = 0.19
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 7 PYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 65
P E++++ DG + ++ + K+V K GLG A GLK+ T +++
Sbjct: 29 PDEVVLVKDGPVTQSLNEVLEEFKRKLPL-KVVPLE--KNRGLGKALNEGLKHCTYDWVA 85
Query: 66 IMDADLSHHPKFIPEMIK-LQQQENLDVVTGT 96
MD D P + + +++ +D+V G
Sbjct: 86 RMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117
Score = 33.1 bits (76), Expect = 0.19
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 232 PYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 290
P E++++ DG + ++ + K+V K GLG A GLK+ T +++
Sbjct: 29 PDEVVLVKDGPVTQSLNEVLEEFKRKLPL-KVVPLE--KNRGLGKALNEGLKHCTYDWVA 85
Query: 291 IMDADLSHHPKFIPEMIK-LQQQENLDVVTGT 321
MD D P + + +++ +D+V G
Sbjct: 86 RMDTDDISLPDRFEKQLDFIEKNPEIDIVGGG 117
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 32.8 bits (75), Expect = 0.30
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS 242
N+K + II LIT YM+E IIV+D G
Sbjct: 191 NKKYGITII--LITHYMEEAVEADRIIVMDSGK 221
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 31.8 bits (73), Expect = 0.47
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 21/101 (20%)
Query: 204 VLLPTYNEKENLPIIVYL-------ITKYMDEGNYPY-EIIVIDDGSPD-GTLDAAKQLQ 254
+++P YN YL + YP E+ + DD S D K+
Sbjct: 5 IVMPVYN-----TPEKYLREAIESVRAQT-----YPNWELCIADDASTDPEVKRVLKKYA 54
Query: 255 SIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
+ +I + R++ G+ A L+ ATG F+ ++D D
Sbjct: 55 AQ--DPRIKVVFREENGGISAATNSALELATGEFVALLDHD 93
Score = 30.6 bits (70), Expect = 1.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 6 YPY-EIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
YP E+ + DD S D K+ + +I + R++ G+ A L+ ATG F
Sbjct: 29 YPNWELCIADDASTDPEVKRVLKKYAAQ--DPRIKVVFREENGGISAATNSALELATGEF 86
Query: 64 IIIMDAD 70
+ ++D D
Sbjct: 87 VALLDHD 93
>gnl|CDD|188524 TIGR04009, wcaE, colanic acid biosynthesis glycosyl transferase
WcaE. This gene is one of the glycosyl transferases
involved in the biosynthesis of colanic acid, an
exopolysaccharide expressed in Enterobacteraceae
species.
Length = 248
Score = 30.6 bits (69), Expect = 1.2
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
+E IV+D GS DGT + ++L + + K G+ A G+ A G + + +
Sbjct: 34 FEWIVVDGGSNDGTAEFLEKLNGEFNLRFVSEKDN----GIYDAMNKGIAMAQGRYTLFL 89
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTG 95
++ H + +L +Q++ + G
Sbjct: 90 NSGDIFHEDVADFVRQLARQKDNAMYIG 117
Score = 30.6 bits (69), Expect = 1.2
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
+E IV+D GS DGT + ++L + + K G+ A G+ A G + + +
Sbjct: 34 FEWIVVDGGSNDGTAEFLEKLNGEFNLRFVSEKDN----GIYDAMNKGIAMAQGRYTLFL 89
Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTG 320
++ H + +L +Q++ + G
Sbjct: 90 NSGDIFHEDVADFVRQLARQKDNAMYIG 117
>gnl|CDD|130619 TIGR01556, rhamnosyltran, L-rhamnosyltransferase. This model
subfamily is comprised of gamma proteobacteria whose
proteins function as L-rhamnosyltransferases in the
synthesis of their respective surface polysaccharides.
Rhamnolipids are glycolipids containing mono- or di-
L-rhamnose molecules. Rhamnolipid synthesis occurs by
sequential glycosyltransferase reactions involving two
distinct rhamnosyltransferase enzymes. In P.aeruginosa,
the synthesis of mono-rhamnolipids is catalyzed by
rhamnosyltransferase 1, and proceeds by a
glycosyltransfer reaction catalyzed by
rhamnosyltransferase 2 to yield di-rhamnolipids [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 281
Score = 30.9 bits (70), Expect = 1.2
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 208 TYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR 267
T+N +L + LIT + + II +D+ + +KI L
Sbjct: 2 TFNP--DLEHLGELITSLPKQVDR---IIAVDNSP----HSDQPLKNARLRGQKIALIHL 52
Query: 268 KKKLGLGTAYMHGLKYATGN---FIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
G+ A GL + ++++D D F+ KL EN
Sbjct: 53 GDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQAC 106
Score = 30.9 bits (70), Expect = 1.2
Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 11 IVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FIIIM 67
I+ D SP +KI L G+ A GL + ++++
Sbjct: 24 IIAVDNSPHSDQPLKNARLRG---QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLL 80
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVV 93
D D F+ KL EN
Sbjct: 81 DQDSRPGNAFLAAQWKLLSAENGQAC 106
>gnl|CDD|222336 pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family.
Members of this family of prokaryotic proteins include
putative glucosyltransferases, which are involved in
bacterial capsule biosynthesis.
Length = 213
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 26 KQLQSIYG--SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH-PKFIPEMI 82
+ ++ + E I + + + +AY + A + + + D+ F+ +++
Sbjct: 18 RSIRRLKVPPGELIAIDNIRNAKSMASAYNEAISRAKAKYKVFIHQDVFLINRDFLYDLL 77
Query: 83 -KLQQQENLDV--VTGTRYVGTGGVYGWDFKRK 112
++ L + V G++++ G+ W+ K
Sbjct: 78 ELFKRDPKLGMIGVAGSQFLPPNGI-WWEGKNL 109
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 251 KQLQSIYG--SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH-PKFIPEMI 307
+ ++ + E I + + + +AY + A + + + D+ F+ +++
Sbjct: 18 RSIRRLKVPPGELIAIDNIRNAKSMASAYNEAISRAKAKYKVFIHQDVFLINRDFLYDLL 77
Query: 308 -KLQQQENLDV--VTGTRYVGTGGVYGWDFKRK 337
++ L + V G++++ G+ W+ K
Sbjct: 78 ELFKRDPKLGMIGVAGSQFLPPNGI-WWEGKNL 109
>gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional.
Length = 248
Score = 30.5 bits (69), Expect = 1.4
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
+E IV+D GS DGT + + L I+ + + V +P G+ A G+ A G F + +
Sbjct: 34 FEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEPDN---GIYDAMNKGIAMAQGRFALFL 89
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK 112
++ H + +L+ Q++ ++ G + G G KR
Sbjct: 90 NSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGD--GHKIKRS 132
Score = 30.5 bits (69), Expect = 1.4
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
+E IV+D GS DGT + + L I+ + + V +P G+ A G+ A G F + +
Sbjct: 34 FEWIVVDGGSNDGTREFLENLNGIF-NLRFVSEPDN---GIYDAMNKGIAMAQGRFALFL 89
Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK 337
++ H + +L+ Q++ ++ G + G G KR
Sbjct: 90 NSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGD--GHKIKRS 132
>gnl|CDD|222183 pfam13506, Glyco_transf_21, Glycosyl transferase family 21. This
is a family of ceramide beta-glucosyltransferases -
EC:2.4.1.80.
Length = 171
Score = 29.1 bits (66), Expect = 2.8
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 51 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYVGTGGVYGWDF 109
A +Y + ++I D+D+ P ++ E++ + +VTG G
Sbjct: 25 ALDAKARY---DLLVISDSDVRVPPDYLRELLAPLADPKVGLVTGPPYGADRRGFAA--- 78
Query: 110 KRKLVSRGANYLTQLLLR-PGVSDLTGSFRLYKKQVLE 146
L + N L +L G+ G +++ LE
Sbjct: 79 --ALEAAFLNTLAGVLQALAGLGFAVGMSMALRREALE 114
Score = 29.1 bits (66), Expect = 2.8
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYVGTGGVYGWDF 334
A +Y + ++I D+D+ P ++ E++ + +VTG G
Sbjct: 25 ALDAKARY---DLLVISDSDVRVPPDYLRELLAPLADPKVGLVTGPPYGADRRGFAA--- 78
Query: 335 KRKLVSRGANYLTQLLLR-PGVSDLTGSFRLYKKQVLE 371
L + N L +L G+ G +++ LE
Sbjct: 79 --ALEAAFLNTLAGVLQALAGLGFAVGMSMALRREALE 114
>gnl|CDD|133058 cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase
is involved in the synthesis of
Poly-beta-1,6-N-acetyl-D-glucosamine.
N-acetyl-glucosamine transferase is responsible for the
synthesis of bacteria
Poly-beta-1,6-N-acetyl-D-glucosamine (PGA).
Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer
that serves as an adhesion for the maintenance of
biofilm structural stability in diverse eubacteria.
N-acetyl-glucosamine transferase is the product of gene
pgaC. Genetic analysis indicated that all four genes of
the pgaABCD locus were required for the PGA production,
pgaC being a glycosyltransferase.
Length = 191
Score = 29.3 bits (66), Expect = 3.1
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAK 251
VL+P NE+ + + + + ++ N+ ++VIDD S D T +
Sbjct: 1 VLVPCLNEEAVIQRTLASLLR--NKPNF--LVLVIDDASDDDTAGIVR 44
Score = 28.1 bits (63), Expect = 6.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 10 IIVIDDGSPDGTLDAAK 26
++VIDD S D T +
Sbjct: 28 VLVIDDASDDDTAGIVR 44
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 29.7 bits (67), Expect = 3.9
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 185 VVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD 244
+ + S + KY L +E++ I+ L D+ N PY++ S D
Sbjct: 33 ALVAVLVALLLWSRQPKYRTLYSNLSEEDAGRIVQEL-----DQMNIPYKV------SSD 81
Query: 245 GT--LDAAKQLQSI 256
G L Q+ +
Sbjct: 82 GGTILVPEDQVYEL 95
>gnl|CDD|236918 PRK11498, bcsA, cellulose synthase catalytic subunit; Provisional.
Length = 852
Score = 29.2 bits (66), Expect = 4.7
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 204 VLLPTYNEKENLPIIVYLITKYMDEG-NYPYE---IIVIDDGSPDGTLDAAKQLQSIYGS 259
+ +PTYNE + V T Y G ++P + I ++DDG + A+++ G
Sbjct: 264 IFVPTYNE----DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV----GV 315
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHP 300
+ I +P + G + LKYA G F+ I D D H P
Sbjct: 316 KYIA-RPTHEHAKAGNIN-NALKYAKGEFVAIFDCD--HVP 352
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 28.8 bits (64), Expect = 5.7
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 224 KYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY 283
+Y DEG YE I +D G ++A ++ S I L K L +G+ G KY
Sbjct: 15 QYSDEGIKAYEFIFGEDYISSGGIEATTKILS-----DIELNENSKVLDIGSGLGGGCKY 69
>gnl|CDD|171849 PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory
protein; Reviewed.
Length = 133
Score = 27.7 bits (61), Expect = 7.4
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 219 VYLITKYMDEGNYPYEIIVIDDGSPDG--TLDAAKQLQ 254
+YLI K + +G+ ++ I DG P T D + L+
Sbjct: 76 LYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLE 113
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 28.4 bits (64), Expect = 8.6
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 49 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 84
Y G YA G FI I HP IP KL
Sbjct: 218 SRVYQQGAYYANGEFIQI-------HPTAIPGDDKL 246
Score = 28.4 bits (64), Expect = 8.6
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 309
Y G YA G FI I HP IP KL
Sbjct: 218 SRVYQQGAYYANGEFIQI-------HPTAIPGDDKL 246
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0717 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,932,188
Number of extensions: 2300865
Number of successful extensions: 2024
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1928
Number of HSP's successfully gapped: 127
Length of query: 435
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 335
Effective length of database: 6,502,202
Effective search space: 2178237670
Effective search space used: 2178237670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)