RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3650
(435 letters)
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 127 bits (321), Expect = 1e-33
Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
+V+LP +E++ + ++ I+ +D E+IV+D GS D T A + S +
Sbjct: 51 SVVLPALDEEDTIGSVIDSISPLVDG--LVDELIVLDSGSTDDTEIRAVAAGARVVSREQ 108
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD-LSHHPKFIPEMIKLQQQENLDVVTGT 321
L + G G A L + G+ ++ +D+D ++ HP F+P ++ + + +
Sbjct: 109 ALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168
Query: 322 RYVGTGGVYGWD--FKRKLVSRGANYLTQLLLRP------GVSDLTGSFRLYKKQVLENL 373
Y V R + + LL + G +++L ++
Sbjct: 169 FYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSV 228
Query: 374 VSSCVSKGYVFQMEMVIRA--RQYNYTIGEVPISFVDRVY-GESKLGGTEIFQFAKALLY 430
+ GY ++ +++ R I +V + + ++LG Q LL
Sbjct: 229 ---PFAPGYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPLAELGAMS-RQVIATLLS 284
Query: 431 LFAT 434
Sbjct: 285 RCGI 288
Score = 105 bits (264), Expect = 9e-26
Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 14/190 (7%)
Query: 6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 65
E+IV+D GS D T A + S + L + G G A L + G+ ++
Sbjct: 77 LVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVV 136
Query: 66 IMDAD-LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWD--FKRKLVSRGANYLT 122
+D+D ++ HP F+P ++ + + + Y V R +
Sbjct: 137 FVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVA 196
Query: 123 QLLLRP------GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA--RQYNYTI 174
+ LL + G +++L ++ + GY ++ +++ R I
Sbjct: 197 RPLLAALRPELGCILQPLGGEYAATRELLTSV---PFAPGYGVEIGLLVDTFDRLGLDAI 253
Query: 175 GEVPISFVDR 184
+V + +
Sbjct: 254 AQVNLGVREH 263
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 119 bits (300), Expect = 3e-30
Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 11/244 (4%)
Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
+ +LP+ N + + I+ I + +I+V+D S DGT A +
Sbjct: 93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVY 152
Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-HPKFIPEMIK-LQQQENLD 316
SE ++ G G A L G+ ++ +DAD P+ ++ + + +
Sbjct: 153 SENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVR 212
Query: 317 VVTG--TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP--GVSDLTGSFRLYKKQVLEN 372
V R G D ++ A L L G + +++ +
Sbjct: 213 FVKAAYRRPFRKGESIEEDGGGRVTELTAKPLFNLFYPELAGFVQPLAGEFVADRELFCS 272
Query: 373 LVSSCVSKGYVFQMEMVIRA--RQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY 430
+ GY + ++I + + +V + + + + +A+
Sbjct: 273 IPFLT---GYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQHLRDLSRMSYAVVRAVAR 329
Query: 431 LFAT 434
Sbjct: 330 RLRQ 333
Score = 93.7 bits (232), Expect = 3e-21
Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%)
Query: 1 MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 60
+ +I+V+D S DGT A + SE ++ G G A L
Sbjct: 120 NERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR 179
Query: 61 GNFIIIMDADLSH-HPKFIPEMIK-LQQQENLDVVTG--TRYVGTGGVYGWDFKRKLVSR 116
G+ ++ +DAD P+ ++ + + + V R G D ++
Sbjct: 180 GDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIEEDGGGRVTEL 239
Query: 117 GANYLTQLLLRP--GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA--RQYNY 172
A L L G + +++ ++ GY + ++I +
Sbjct: 240 TAKPLFNLFYPELAGFVQPLAGEFVADRELFCSIPFLT---GYAVETGIMIDVLKKVGLG 296
Query: 173 TIGEVPISFVDR 184
+ +V +
Sbjct: 297 AMAQVDLGERQN 308
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 77.5 bits (190), Expect = 9e-16
Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 27/220 (12%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQS--IYGSE 260
V+ P +E ++++ + ++ D T +A ++ +
Sbjct: 3 LVVFPFKHEHPE--VLLHNVRVAAAHPRV--HEVLCIGYERDQTYEAVERAAPEISRATG 58
Query: 261 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQ 310
V +++L G G L+Y I DAD+ S P +I + +
Sbjct: 59 TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEE-A 117
Query: 311 QQENLDVVTG--TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQ 368
+V R + + G L + G L +++
Sbjct: 118 ADFGYGLVRHYFPRASTDAMI-----TWMITRTGFALLWPHTELSWIEQPLGGELLMRRE 172
Query: 369 VLENLVSSCV---SKGYVFQMEMVIRARQYNYTIGEVPIS 405
V L + Q +I E I
Sbjct: 173 VAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIP 212
Score = 68.3 bits (166), Expect = 1e-12
Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 23/189 (12%)
Query: 9 EIIVIDDGSPDGTLDAAKQLQS--IYGSEKIVLKPRKKKL-----GLGTAYMHGLKYA-- 59
++ D T +A ++ + V +++L G G L+Y
Sbjct: 30 HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLE 89
Query: 60 --TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG--TRYVGTGGVYGWDFKRKLV 114
I DAD+ S P +I + + +V R + +
Sbjct: 90 ETQWERIHFYDADITSFGPDWITKAEE-AADFGYGLVRHYFPRASTDAMI-----TWMIT 143
Query: 115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV---SKGYVFQMEMVIRARQYN 171
G L + G L +++V L + Q
Sbjct: 144 RTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQG 203
Query: 172 YTIGEVPIS 180
+I E I
Sbjct: 204 VSIYECYIP 212
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 67.3 bits (164), Expect = 3e-12
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
++++PTYN + I+ + ++ YE+IV DDGS + + ++ +S
Sbjct: 96 SIVIPTYNRAK---ILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFES---LLN 149
Query: 262 IVLKPRKKK-LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
I +K L GL+ A N++ I+D D++ +P ++ ++ L +N+ ++
Sbjct: 150 IKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIG 209
Query: 320 GTRYVGTGGVYGWDFKRK 337
+Y+ T DF +
Sbjct: 210 PRKYIDTSKHTYLDFLSQ 227
Score = 67.3 bits (164), Expect = 3e-12
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 6 YP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
E+ + DDGS D TL ++ + + + + +K G+G+A ++ G +I
Sbjct: 402 ITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI---SQKNKGIGSASNTAVRLCRGFYI 458
Query: 65 IIMDADLSHHPKFIPEMIK-LQQQENLDVV-TGTRYVG-TGGVYGWDFKRKLVSRGANYL 121
+D+D P + + ++ +L V T R + G + + + SR
Sbjct: 459 GQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSR----- 513
Query: 122 TQLLLRPGVSDLTGSFRLYKKQVLENL 148
+ L + + FR++ +
Sbjct: 514 -EKLTS---AMICHHFRMFTARAWNLT 536
Score = 67.3 bits (164), Expect = 3e-12
Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 231 YP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289
E+ + DDGS D TL ++ + + + + +K G+G+A ++ G +I
Sbjct: 402 ITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI---SQKNKGIGSASNTAVRLCRGFYI 458
Query: 290 IIMDADLSHHPKFIPEMIK-LQQQENLDVV-TGTRYVG-TGGVYGWDFKRKLVSRGANYL 346
+D+D P + + ++ +L V T R + G + + + SR
Sbjct: 459 GQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSR----- 513
Query: 347 TQLLLRPGVSDLTGSFRLYKKQVLENL 373
+ L + + FR++ +
Sbjct: 514 -EKLTS---AMICHHFRMFTARAWNLT 536
Score = 63.4 bits (154), Expect = 6e-11
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNFIII 66
YE+IV DDGS + + ++ +S I +K L GL+ A N++ I
Sbjct: 124 YEVIVADDGSKENIEEIVREFES---LLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAI 180
Query: 67 MDADLSHHPKFIPEMIK-LQQQENLDVVTGTRYVGTGGVYGWDFKRK 112
+D D++ +P ++ ++ L +N+ ++ +Y+ T DF +
Sbjct: 181 LDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQ 227
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 63.6 bits (155), Expect = 1e-11
Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 35/187 (18%)
Query: 203 TVLLPTYNEKENLPIIVYLITK---------YMDEGNYPYEIIVIDDGSPDGTLDAAKQL 253
+V++ +YN+ + + K + D +E+ ++DD S + TL+ +
Sbjct: 4 SVIMTSYNKSD-------YVAKSISSILSQTFSD-----FELFIMDDNSNEETLNVIRPF 51
Query: 254 QS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD-LSHHPKFIPEMI 307
+ Y S+ +K R +K ++ A G +I D + P + +M+
Sbjct: 52 LNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIY-MPDRLLKMV 110
Query: 308 K-LQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYK 366
+ L V+ + Y + R +V Q+ + S +++
Sbjct: 111 RELDTHPEKAVI-YSASK----TYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSV-MHR 164
Query: 367 KQVLENL 373
VLE +
Sbjct: 165 YSVLEKV 171
Score = 62.8 bits (153), Expect = 3e-11
Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 14/148 (9%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
+E+ ++DD S + TL+ + + Y S+ +K R +K ++ A G
Sbjct: 31 FELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGE 90
Query: 63 FIIIMDAD-LSHHPKFIPEMIK-LQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY 120
+I D + P + +M++ L V+ + Y + R +V
Sbjct: 91 YITYATDDNIY-MPDRLLKMVRELDTHPEKAVI-YSASK----TYHLNENRDIVKETVRP 144
Query: 121 LTQLLLRPGVSDLTGSFRLYKKQVLENL 148
Q+ + S +++ VLE +
Sbjct: 145 AAQVTWNAPCAIDHCSV-MHRYSVLEKV 171
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 62.7 bits (152), Expect = 1e-10
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 5/140 (3%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
+ +I+++DGS D + + Y + I + G A L+ + + +
Sbjct: 32 FNLIIVNDGSTDQSKKLMDEAIKDY-DKNIRFIDLDENSGHAHARNIALEEVETPYFMFL 90
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
DAD I ++ + + + + + ++ A LR
Sbjct: 91 DADDELASYAITFYLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFLR 150
Query: 128 PGVSDLTGSFRLYKKQVLEN 147
+ +++ ++
Sbjct: 151 KQSA----CNIIFRTAIVRA 166
Score = 62.7 bits (152), Expect = 1e-10
Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 5/140 (3%)
Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
+ +I+++DGS D + + Y + I + G A L+ + + +
Sbjct: 32 FNLIIVNDGSTDQSKKLMDEAIKDY-DKNIRFIDLDENSGHAHARNIALEEVETPYFMFL 90
Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 352
DAD I ++ + + + + + ++ A LR
Sbjct: 91 DADDELASYAITFYLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFLR 150
Query: 353 PGVSDLTGSFRLYKKQVLEN 372
+ +++ ++
Sbjct: 151 KQSA----CNIIFRTAIVRA 166
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 59.2 bits (144), Expect = 3e-10
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
EII+IDD SPD + Y V+ KK GLG A GL ATG ++
Sbjct: 35 IEIILIDDESPDNCPKICDDYAAQY-PNIKVI--HKKNAGLGMACNSGLDVATGEYVAFC 91
Query: 68 DADLSHHPKFIPEMIKLQQQENLDVVTG 95
D+D M + Q+ D V
Sbjct: 92 DSDDYVDSDMYMTMYNVAQKYTCDAVFT 119
Score = 59.2 bits (144), Expect = 3e-10
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
EII+IDD SPD + Y V+ KK GLG A GL ATG ++
Sbjct: 35 IEIILIDDESPDNCPKICDDYAAQY-PNIKVI--HKKNAGLGMACNSGLDVATGEYVAFC 91
Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTG 320
D+D M + Q+ D V
Sbjct: 92 DSDDYVDSDMYMTMYNVAQKYTCDAVFT 119
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 59.8 bits (144), Expect = 7e-10
Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 35/237 (14%)
Query: 204 VLLPTYNEKEN-LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAA--KQLQSIYGSE 260
V++ +NE + L V+ + + EI+++DD S L ++ +
Sbjct: 33 VVIVFHNEAWSTLLRTVHSVINRSPR-HMIEEIVLVDDASERDFLKRPLESYVKKLKVPV 91
Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
++ +++ GL A + G + G I +DA ++ ++ + + VV
Sbjct: 92 HVI--RMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149
Query: 321 T---------RYVGTG----GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLT-------- 359
Y+ G + W + + Q + D T
Sbjct: 150 IIDVISDDTFEYMAGSDMTYGGFNWKL-----NFRWYPVPQREMDRRKGDRTLPVRTPTM 204
Query: 360 -GSFRLYKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGE 413
G + + + + + +E+ R Q T+ V S V V+ +
Sbjct: 205 AGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRK 261
Score = 55.1 bits (132), Expect = 2e-08
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 33/204 (16%)
Query: 5 NYPYEIIVIDDGSPDGTLDAA--KQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
+ EI+++DD S L ++ + ++ +++ GL A + G + G
Sbjct: 59 HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVI--RMEQRSGLIRARLKGAAVSRGQ 116
Query: 63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG----GVYGWDF 109
I +DA ++ ++ + + VV Y+ G + W
Sbjct: 117 VITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKL 176
Query: 110 KRKLVSRGANYLTQLLLRPGVSDLT---------GSFRLYKKQVLENL--VSSCVSKGYV 158
+ + Q + D T G + + + + +
Sbjct: 177 -----NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGG 231
Query: 159 FQMEMVIRARQYNYTIGEVPISFV 182
+E+ R Q T+ V S V
Sbjct: 232 ENLEISFRIWQCGGTLEIVTCSHV 255
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 57.5 bits (138), Expect = 4e-09
Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 36/237 (15%)
Query: 203 TVLLPTYNEKEN-LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
+V++ +NE + L V + K + EII++DD S L +
Sbjct: 69 SVVITFHNEARSALLRTVVSVLKKSPP-HLIKEIILVDDYS---NDPEDGALLGKIEKVR 124
Query: 262 IVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321
++ ++ GL + + G A + +D+ + ++ +++ ++ VV+
Sbjct: 125 VL--RNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPI 182
Query: 322 ---------RYVGTG----GVYGWDFKRKLVSRGANYLTQLLLRPGVSD---------LT 359
+YVG G + W+ +Y+T R + +
Sbjct: 183 IDVINMDNFQYVGASADLKGGFDWNL-----VFKWDYMTPEQRRSRQGNPVAPIKTPMIA 237
Query: 360 GSFRLYKKQVLENLV--SSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGES 414
G + K E L + +E+ R Q ++ +P S V V+ +
Sbjct: 238 GGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQ 294
Score = 52.5 bits (125), Expect = 2e-07
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 34/202 (16%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
+ EII++DD S L +++ ++ GL + + G A +
Sbjct: 96 HLIKEIILVDDYS---NDPEDGALLGKIEKVRVL--RNDRREGLMRSRVRGADAAQAKVL 150
Query: 65 IIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG----GVYGWDFKR 111
+D+ + ++ +++ ++ VV+ +YVG G + W+
Sbjct: 151 TFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNL-- 208
Query: 112 KLVSRGANYLTQLLLRPGVSD---------LTGSFRLYKKQVLENLV--SSCVSKGYVFQ 160
+Y+T R + + G + K E L +
Sbjct: 209 ---VFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGEN 265
Query: 161 MEMVIRARQYNYTIGEVPISFV 182
+E+ R Q ++ +P S V
Sbjct: 266 LEISFRVWQCGGSLEIIPCSRV 287
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 57.2 bits (137), Expect = 5e-09
Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 24/233 (10%)
Query: 203 TVLLPTYNEKEN--LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
++++P +NE + L + ++ + E EI+++DD S L K L+
Sbjct: 115 SIIIPFHNEGWSSLLRTVHSVLNRSPPE--LVAEIVLVDDFSDREHLK--KPLEDYMALF 170
Query: 261 KIVLKPRKKK-LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
V R KK GL M G ATG+ I +D+ + ++P ++ + +V
Sbjct: 171 PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVC 230
Query: 320 GT---------RYVGTG-----GVYGWDFKRKLVSRGANYLTQLLLRPGVSD-LTGSFRL 364
RY G + W+ K + P S + G
Sbjct: 231 PMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFA 290
Query: 365 YKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
++ L + Q E+ + + ++P S V +Y +
Sbjct: 291 VDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYV 343
Score = 53.7 bits (128), Expect = 7e-08
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNF 63
EI+++DD S L K L+ V R KK GL M G ATG+
Sbjct: 142 ELVAEIVLVDDFSDREHLK--KPLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDV 199
Query: 64 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG-----GVYGWDF 109
I +D+ + ++P ++ + +V RY G + W+
Sbjct: 200 ITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM 259
Query: 110 KRK 112
K
Sbjct: 260 YYK 262
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 49.3 bits (117), Expect = 2e-06
Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 35/244 (14%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
V +PT+N + + +T +IV D G + ++
Sbjct: 183 AVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRL 242
Query: 263 VLKPRKKKLGLGTAYMHGLKYATGN----FIIIMDADLSHHPKFIPEMIKL--------- 309
+ + LG Y + A N I+ MD D+ P I ++ +
Sbjct: 243 SIHD-QPNLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPML 301
Query: 310 ------------QQQENLDVVTGTRYVGTGGV---YGWDFKRKLVSRGANYLTQLLLRPG 354
+VV + ++ T Y DF ++ + L R
Sbjct: 302 VGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRID 361
Query: 355 VSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV---IRARQYNYTIGEVPISFVDRVY 411
V + +QV E L + + +RA ++ Y +P + + +
Sbjct: 362 VDYNGWWTCMIPRQVAEELG---QPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHMA 418
Query: 412 GESK 415
K
Sbjct: 419 WSDK 422
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/206 (15%), Positives = 61/206 (29%), Gaps = 35/206 (16%)
Query: 8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN----F 63
+IV D G + ++ + + LG Y + A N
Sbjct: 213 GAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHD-QPNLGGSGGYSRVMYEALKNTDCQQ 271
Query: 64 IIIMDADLSHHPKFIPEMIKL---------------------QQQENLDVVTGTRYVGTG 102
I+ MD D+ P I ++ + +VV + ++ T
Sbjct: 272 ILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTA 331
Query: 103 GV---YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF 159
Y DF ++ + L R V + +QV E L
Sbjct: 332 APHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELG---QPLPLFI 388
Query: 160 QMEMV---IRARQYNYTIGEVPISFV 182
+ + +RA ++ Y +P + +
Sbjct: 389 KWDDADYGLRAAEHGYPTVTLPGAAI 414
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 67/453 (14%), Positives = 134/453 (29%), Gaps = 89/453 (19%)
Query: 1 MDEGNYPYEIIV-------IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 53
E Y Y+ I+ +D+ D K + S + I++ GT +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS---GTLRL 67
Query: 54 HGLKYATGNFII--IMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWD-- 108
+ ++ ++ L + KF+ IK + +Q ++ Y+ D
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---RMYIEQRDRLYNDNQ 124
Query: 109 -FKRKLVSRGANY--LTQLL--LRPG----VSDLTGSFRLYKKQVLENLVSSCVSKGYVF 159
F + VSR Y L Q L LRP + + GS K + V C+S
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GKTWVALDV--CLSYKVQC 178
Query: 160 QMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIV 219
+M+ I + + V + N + + N K + I
Sbjct: 179 KMDFKI----FWLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 220 YLITKYMDEGNYPYEIIVIDDGSPDGTLDA----AKQL---------QSIYGSEKIVLKP 266
+ + + Y ++V+ + +A K L + + +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 267 RKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-----HPKFIPEMIKLQQQENLDVVTGT 321
+ L + L ++ DL +P+ + +I ++ L
Sbjct: 292 DHHSMTLTPDEVKSL-LL--KYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNW 347
Query: 322 RYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR-----------LY----K 366
++V D ++ N L R L F L
Sbjct: 348 KHVNC------DKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVI 400
Query: 367 KQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI 399
K + +V+ V + + ++ +I
Sbjct: 401 KSDVMVVVNKLHKYSLVEK-----QPKESTISI 428
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
gingivalis}
Length = 303
Score = 35.9 bits (82), Expect = 0.021
Identities = 29/229 (12%), Positives = 58/229 (25%), Gaps = 20/229 (8%)
Query: 20 GTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP 79
++ Q + R+K G A + G F +I AD +
Sbjct: 75 IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIREPFAVIN-ADDFYGRNGFE 133
Query: 80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR-------GANYLTQLLLRPGVSD 132
+ + Y G G + LT ++ R G+
Sbjct: 134 VLARKLMTLEGK---QGEYCMVGYRVGNTLSESGGVSRGVCQVDEKHLLTGVVERTGIER 190
Query: 133 LTGSFRLYKKQVLENLV--SSCVSKG-YVFQMEMVIRARQYNYTIGEVPISFVDRVVFTT 189
G+ + + + VS + F + + + F
Sbjct: 191 TDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIP 250
Query: 190 QAIMSGDSVKNKYTVLLPTYNE------KENLPIIVYLITKYMDEGNYP 232
+ +L T ++ P +V + + + G YP
Sbjct: 251 FVVNDLIRSGRASVEVLDTTARWFGVTYSDDRPGVVAKLRELTEAGEYP 299
Score = 30.9 bits (69), Expect = 0.71
Identities = 13/97 (13%), Positives = 22/97 (22%), Gaps = 4/97 (4%)
Query: 245 GTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP 304
++ Q + R+K G A + G F +I AD +
Sbjct: 75 IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAIREPFAVIN-ADDFYGRNGFE 133
Query: 305 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 341
+ + Y G G
Sbjct: 134 VLARKLMTLEGK---QGEYCMVGYRVGNTLSESGGVS 167
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 34.6 bits (79), Expect = 0.039
Identities = 22/200 (11%), Positives = 58/200 (29%), Gaps = 15/200 (7%)
Query: 216 PIIVYLITKYMDEGNYPYEIIVI--DDGSPDGTLDAAKQLQSIYGSEKIVLK--PRKKKL 271
P+ Y+ K DE + + + D D L++ ++ + + +
Sbjct: 3 PVPTYVQDK--DESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQF 60
Query: 272 GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-----LQQQENLDV--VTGTRYV 324
+ + L G ++I D+ + +++ + V V G+ +
Sbjct: 61 HGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWR 120
Query: 325 GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF 384
G + + V L F L ++ S + + +
Sbjct: 121 PLNHSVTAQALHISDVFGNDRRRGNVPCR-VESLDECFLLMRRLKPVL-NSYDMQGFHYY 178
Query: 385 QMEMVIRARQYNYTIGEVPI 404
++ ++A +
Sbjct: 179 GADLCLQAEFLGGRAYAIDF 198
Score = 33.9 bits (77), Expect = 0.075
Identities = 19/189 (10%), Positives = 53/189 (28%), Gaps = 13/189 (6%)
Query: 2 DEGNYPYEIIVI--DDGSPDGTLDAAKQLQSIYGSEKIVLK--PRKKKLGLGTAYMHGLK 57
DE + + + D D L++ ++ + + + + + L
Sbjct: 12 DESTLMFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLP 71
Query: 58 YATGNFIIIMDADLSHHPKFIPEMIK-----LQQQENLDV--VTGTRYVGTGGVYGWDFK 110
G ++I D+ + +++ + V V G+ +
Sbjct: 72 RCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQAL 131
Query: 111 RKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQY 170
G + + V L F L ++ S + + + ++ ++A
Sbjct: 132 HISDVFGNDRRRGNVPCR-VESLDECFLLMRRLKPVL-NSYDMQGFHYYGADLCLQAEFL 189
Query: 171 NYTIGEVPI 179
+
Sbjct: 190 GGRAYAIDF 198
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD
motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15
PDB: 1omx_A* 1on6_A* 1on8_A*
Length = 293
Score = 30.8 bits (69), Expect = 0.77
Identities = 15/109 (13%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 194 SGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVI-DDGSPDGTLDAAKQ 252
S + +T+++ TYN + L ++ +++IV+ ++ G +
Sbjct: 22 PSKSALDSFTLIMQTYNRTDLLLRLLNHYQAV----PSLHKVIVVWNNVGEKGP---EEL 74
Query: 253 LQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK 301
S+ V+ + + + T N ++++D D +
Sbjct: 75 WNSLGPHPIPVIFKPQTANKMRNRLQVFPEVET-NAVLMVDDDTLISAQ 122
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 29.0 bits (64), Expect = 3.6
Identities = 18/141 (12%), Positives = 46/141 (32%), Gaps = 8/141 (5%)
Query: 208 TYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDG---SPDGTLDAAKQLQSIYGSEKIVL 264
+ + + + +D+ Y++ V+D+G P + + S K V
Sbjct: 46 DATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQ---EVPNAFGRVLYSSKYVN 102
Query: 265 KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYV 324
+ + GLG + I ++ + + +K+ +N ++ V
Sbjct: 103 RQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSV 162
Query: 325 GTGGVYGWDFKRKLVSRGANY 345
G+ +S ++
Sbjct: 163 --ENTRGFHGTSVAISIPGDW 181
>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A
2qb8_A*
Length = 397
Score = 28.6 bits (63), Expect = 4.5
Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 185 VVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS 242
+V + + + + + + L ++V L+T + G+ E++++ D +
Sbjct: 287 IVKRMSWLFNEHGGEADFVNQCRRFQAERGLDVLV-LLTSWRKAGDSHRELVILGDSN 343
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
PLP-independenet amino acid racemase,
aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
{Arabidopsis thaliana} PDB: 3ekm_A*
Length = 317
Score = 28.0 bits (63), Expect = 6.6
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 53 MHGLKYATGNFIIIMDADLSHHPKFIPEMIK 83
HGL GN I++D S PK E
Sbjct: 32 YHGL----GNDFILVDNRDSSEPKITQEQAA 58
Score = 28.0 bits (63), Expect = 6.6
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIK 308
HGL GN I++D S PK E
Sbjct: 32 YHGL----GNDFILVDNRDSSEPKITQEQAA 58
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 27.8 bits (62), Expect = 8.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 180 SFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDE 228
SFV F Q I + + + + VY + K++DE
Sbjct: 417 SFVMSNSFANQTI-----------AQIELWTKNDEYDNEVYRLPKHLDE 454
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 27.8 bits (62), Expect = 8.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 180 SFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDE 228
SFV FT Q + + + VY++ K++DE
Sbjct: 417 SFVMSNSFTNQTL-----------AQIELFTRGGEYANKVYVLPKHLDE 454
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.403
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,965,056
Number of extensions: 436946
Number of successful extensions: 773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 41
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.9 bits)